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2024-05-03 09:39:21

Gene list

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COG category: Replication, recombination and repair
Organism: Candidatus Pelagibacter ubique HTCC1062, HTCC1062

Number of genes found: 61

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Candidatus Pelagibacter ubique HTCC1062, HTCC1062
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SAR11_0720 possible membrane proteinchromosome CDS703605 867 + 0.206459
NA SAR11_0298 DNA photolyase-like proteinchromosome CDS296040 1143 + 0.258968
NA SAR11_1002 TatD related DNasechromosome CDS982348 765 + 0.260131
NA SAR11_1079 Putative Holliday junction resolvasechromosome CDS1045593 456 + 0.309211
NA SAR11_1269 conserved hypothetical proteinchromosome CDS1204894 1653 - 0.284936
NA SAR11_1330 putative lipoproteinchromosome CDS1265702 738 + 0.230352
NA SAR11_0154 N6-adenine-specific methylasechromosome CDS157024 567 + 0.238095
NA SAR11_0455 hypothetical transmembrane proteinchromosome CDS450066 1656 + 0.25785
NA SAR11_1011 Excinuclease ABCchromosome CDS990347 252 + 0.230159
NA SAR11_1169 possible multi-domain proteinchromosome CDS1122717 900 - 0.316667
NA SAR11_0721 probable ATPase involved in DNA replication initiationchromosome CDS704468 663 + 0.224736
NA SAR11_0107 probable DNA-directed DNA polymerasechromosome CDS118803 732 + 0.26776
NA SAR11_0926 hypothetical SurA-like proteinchromosome CDS890930 1422 - 0.227145
NA SAR11_1207 conserved hypothetical proteinchromosome CDS1155958 390 + 0.235897
NA SAR11_1072 Staphylococcal nuclease-like proteinchromosome CDS1038898 486 - 0.283951
ada SAR11_1021 6-O-methylguanine DNA methyltransferasechromosome CDS999542 288 + 0.368056
babIM SAR11_0109 site-specific DNA methyltransferasechromosome CDS120216 1071 + 0.304388
dnaA SAR11_0410 Chromosomal replication initiator proteinchromosome CDS398915 1335 + 0.265918
dnaB SAR11_0702 replicative DNA helicase (dnaB)chromosome CDS687312 1419 - 0.3284
dnaE SAR11_0906 DNA polymerase III alpha subunitchromosome CDS869738 3417 + 0.288557
dnaG SAR11_0038 DNA primasechromosome CDS43790 1776 - 0.275338
dnaN SAR11_0411 DNA polymerase IIIchromosome CDS400461 891 + 0.25477
dnaQ SAR11_0339 DNA polymerase IIIchromosome CDS332015 672 - 0.28869
dnaX SAR11_0507 DNA-directed DNA polymerase gamma/tau subunitchromosome CDS493665 1674 + 0.269415
gyrA SAR11_0985 DNA gyrase subunit Achromosome CDS966406 2550 + 0.312157
gyrB SAR11_0446 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)chromosome CDS441234 2058 + 0.29932
himA SAR11_1035 Bacterial DNA-binding proteinchromosome CDS1009118 309 - 0.220065
himD SAR11_0491 Integration host factor beta-subunit (IHF-beta)chromosome CDS479666 291 - 0.28866
holA SAR11_0355 DNA-directed DNA polymerase IIIchromosome CDS347236 996 - 0.226908
holB SAR11_1000 probable DNA polymerase IIIchromosome CDS979881 933 + 0.209003
hupA SAR11_0817 non-specific DNA-binding protein HBsuchromosome CDS791591 276 + 0.32971
ligA SAR11_0016 DNA ligasechromosome CDS17539 2031 - 0.269325
mutM SAR11_0408 Formamidopyrimidine-DNA glycosylasechromosome CDS397259 864 + 0.232639
mutY SAR11_0111 A/G-specific adenine glycosylasechromosome CDS122434 981 - 0.251784
nth SAR11_0365 probable endonuclease IIIchromosome CDS356265 654 - 0.30581
nudH SAR11_0228 probable (di)nucleoside polyphosphate hydrolasechromosome CDS226898 477 + 0.297694
phrB SAR11_1318 Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme)chromosome CDS1253122 1422 + 0.294655
pilO SAR11_0062 type 4 fimbrial biogenesis protein PilOchromosome CDS72547 678 - 0.283186
polA SAR11_0200 DNA polymerase Ichromosome CDS200829 2775 - 0.294775
priA SAR11_0234 probable primosomal protein Nchromosome CDS232263 1956 - 0.281697
recA SAR11_0641 recA proteinchromosome CDS625897 1077 + 0.358403
recG SAR11_0993 ATP-dependent DNA helicase recGchromosome CDS972986 2052 - 0.263158
recJ SAR11_1010 single-stranded-DNA-specific exonuclease RecJchromosome CDS988522 1695 + 0.236578
recO SAR11_1052 Recombination protein Ochromosome CDS1022169 681 - 0.256975
recR SAR11_0509 recR-like proteinchromosome CDS495664 612 + 0.300654
rlhE SAR11_0164 probable ATP-dependent RNA helicasechromosome CDS166432 1749 - 0.331046
rnhA SAR11_0126 Ribonuclease H (RNase H)chromosome CDS135675 426 + 0.312207
rnhB SAR11_0108 Ribonuclease HII (RNase HII)chromosome CDS119534 561 + 0.28164
sbcB SAR11_0483 Exodeoxyribonuclease Ichromosome CDS472372 1428 + 0.316527
ssb SAR11_0984 single-strand binding protein (ssb)chromosome CDS965942 459 + 0.342048
suv3 SAR11_0426 ATP-dependent helicasechromosome CDS412276 2481 - 0.278517
tag SAR11_0186 DNA-3-methyladenine glycosylase Ichromosome CDS186570 573 - 0.287958
topA SAR11_1083 DNA topoisomerase Ichromosome CDS1048935 2592 + 0.310571
umuC SAR11_0634 umuCchromosome CDS620734 1281 - 0.293521
ung SAR11_0873 uracil-DNA glycosylasechromosome CDS841141 675 - 0.245926
uvrA SAR11_0983 excinuclease ABC chain Achromosome CDS962973 2880 - 0.320833
uvrB SAR11_0081 excinuclease ABC chain Bchromosome CDS95195 2172 + 0.333333
uvrC SAR11_0084 excinuclease ABC chain Cchromosome CDS98509 1836 + 0.300109
uvrD SAR11_0014 DNA helicase IIchromosome CDS13829 2037 + 0.292587
xerD SAR11_1019 Integrase/recombinase xerD-like proteinchromosome CDS997872 957 - 0.296761
xthA SAR11_0967 exodeoxyribonuclease IIIchromosome CDS950443 777 - 0.272844