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2024-05-03 00:36:08

Gene list

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COG category: Replication, recombination and repair
Organism: Escherichia coli O157:H7 EDL933, EDL933

Number of genes found: 351

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Z6021 orf, hypothetical proteinchromosome CDS2281573 912 - 0.379386
NA Z1825 putative IS encoded proteinchromosome CDS1670022 906 - 0.548565
NA Z3161 unknown protein encoded by IS629chromosome CDS2818240 327 + 0.525994
NA Z1826 putative IS encoded proteinchromosome CDS1671089 162 - 0.524691
NA Z1648 unknown in putative ISEc8chromosome CDS1525442 426 + 0.511737
NA Z2057 putative endonuclease of prophage CP-933Ochromosome CDS1863295 360 + 0.5
NA Z2092 unknown protein encoded within prophage CP-933Ochromosome CDS1883871 426 + 0.530516
NA Z3664 putative virulence proteinchromosome CDS3315873 1209 - 0.514475
NA Z2430 putative transposase for IS629chromosome CDS2177310 648 + 0.541667
NA Z3924 partial putative transposasechromosome CDS3550847 219 + 0.552511
NA Z5428 chromosome CDS4944085 993 + 0.365559
NA Z2851 putative enzymechromosome CDS2568358 1911 - 0.554683
NA Z5088 unknown protein encoded by IS911 within prophage CP-933Lchromosome CDS4651322 351 + 0.501424
NA Z6014 unknown protein encoded in ISEc8chromosome CDS2277639 402 + 0.514925
NA Z2389 putative DNA modification methyltransferase encoded within prophage CP-933Rchromosome CDS2151025 1152 - 0.364583
NA Z3923 chromosome CDS3550606 207 + 0.52657
NA Z4799 putative DNA processing proteinchromosome CDS4358731 1296 - 0.503086
NA Z5089 putative transposasechromosome CDS4651861 678 + 0.517699
NA Z1338 putative DNA replication factor encoded within cryptic prophage CP-933Mchromosome CDS1260216 747 + 0.519411
NA Z5879 orf; hypothetical protein in ISchromosome CDS5379326 327 + 0.541284
NA Z4330 putative transposasechromosome CDS3933017 846 + 0.49409
NA Z1599 unknown in ISEc8chromosome CDS1485375 351 + 0.529915
NA Z4336 unknown protein encoded by ISEc8chromosome CDS3938092 348 + 0.586207
NA Z3925 partial putative transposasechromosome CDS3551085 411 + 0.530414
NA Z1827 putative IS encoded proteinchromosome CDS1671207 354 + 0.502825
NA Z3156 unknown protein encoded by ISEc8chromosome CDS2812734 1539 + 0.584795
NA Z6019 putative transposase fragmentchromosome CDS2280634 258 + 0.511628
NA Z3561 putative regulatorchromosome CDS3214760 543 - 0.535912
NA Z5816 putative virulence proteinchromosome CDS5312196 1209 + 0.514475
NA Z2080 putative IS encoded protein within CP-933Ochromosome CDS1875922 693 - 0.606061
NA Z1601 unknown in ISEc8chromosome CDS1487373 858 - 0.541958
NA Z1863 putative phosphohydrolasechromosome CDS1699525 462 - 0.504329
NA Z4502 orf; hypothetical protein in IS629chromosome CDS4100476 327 + 0.541284
NA Z1785 putative endodeoxyribonuclease of prophage CP-933Nchromosome CDS1637932 372 + 0.532258
NA Z5028 chromosome CDS4587466 582 + 0.369416
NA Z2073 putative transposase within CP-933Ochromosome CDS1871077 648 - 0.541667
NA Z5815 putative transposasechromosome CDS5311757 417 - 0.46283
NA Z1444 putative serine/threonine kinase encoded by bacteriophage BP-933Wchromosome CDS1340932 1047 - 0.354346
NA Z2429 unknown protein in IS629chromosome CDS2176744 327 + 0.541284
NA Z3162 IS629 transposasechromosome CDS2818563 891 + 0.529742
NA Z1602 unknown in ISEc8chromosome CDS1488312 363 - 0.53719
NA Z0271 chromosome CDS272653 1137 + 0.417766
NA Z4316 unknown protein encoded by ISEc8chromosome CDS3922472 348 + 0.568965
NA Z0857 putative receptorchromosome CDS816079 1074 + 0.422719
NA Z2561 putative transposase (partial)chromosome CDS2273635 165 + 0.557576
NA Z2081 putative IS encoded protein within CP-933Ochromosome CDS1876695 348 - 0.586207
NA Z2079 putative IS encoded protein within CP-933Ochromosome CDS1875212 411 - 0.554745
NA Z1500 unknown protein encoded by bacteriophage BP-933Wchromosome CDS1389734 396 - 0.467172
NA Z1639 unknown in ISchromosome CDS1516600 327 - 0.519878
NA Z2365 putative DNA packaging protein of prophage CP-933R; terminase small subunitchromosome CDS2137613 510 - 0.468627
NA Z1866 putative integrase of prophage CP-933Xchromosome CDS1702185 1143 - 0.433946
NA Z6069 putative DNA replication factor encoded within cryptic prophage CP-933Pchromosome CDS2321254 741 - 0.54386
NA Z3922 putative transposasechromosome CDS3550280 327 + 0.541284
NA Z1221 putative transposasechromosome CDS1142979 888 - 0.53491
NA Z1123 unknown in IS1Nchromosome CDS1062497 438 + 0.468037
NA Z4335 unknown protein in IS629chromosome CDS3937575 327 - 0.541284
NA Z2254 partial H repeat-associated protein of Rhs elementchromosome CDS2037265 180 - 0.377778
NA Z1159 unknown in ISEc8chromosome CDS1089346 426 + 0.485915
NA Z3945 chromosome CDS3564664 1044 - 0.347701
NA Z2562 putative transposase (partial)chromosome CDS2274033 252 + 0.492063
NA Z1571 unknown protein encoded in ISEc8chromosome CDS1467288 348 - 0.583333
NA Z1132 unknown protein encoded in ISEc8chromosome CDS1071681 348 - 0.583333
NA Z1570 unknown protein encoded in ISEc8chromosome CDS1465700 1539 - 0.584795
NA Z1934 putative transposase for IS629chromosome CDS1755359 648 + 0.540123
NA Z4193 type III secretion apparatus proteinchromosome CDS3794764 336 - 0.369048
NA Z1638 putative transposasechromosome CDS1515713 888 - 0.533784
NA Z1122 chromosome CDS1062369 102 + 0.470588
NA Z1202 chromosome CDS1123332 2136 + 0.416667
NA Z1158 unknown in ISEc8chromosome CDS1088541 486 - 0.561728
NA Z6022 putative integrase fragmentchromosome CDS2282949 702 + 0.490029
NA Z1562 unknown in IS1Nchromosome CDS1458104 438 + 0.468037
NA Z1597 unknown in ISEc8chromosome CDS1484148 486 - 0.561728
NA Z1843 unknown protein encoded by prophage CP-933Cchromosome CDS1683407 1161 + 0.540913
NA Z1600 unknown in ISEc8chromosome CDS1485756 1614 + 0.542751
NA Z6061 putative endonuclease encoded by cryptic prophage CP-933Pchromosome CDS2316917 360 - 0.516667
NA Z0275 chromosome CDS276198 1173 + 0.375959
NA Z6017 putative transposase fragmentchromosome CDS2280257 348 + 0.545977
NA Z3297 putative transposase for IS629chromosome CDS2961049 891 - 0.540965
NA Z4338 unknown protein encoded by ISEc8chromosome CDS3940250 351 + 0.524217
NA Z1661 unknown protein encoded by IS629chromosome CDS1539472 327 - 0.519878
NA Z1928 unknown protein encoded by ISEc8 in prophage CP-933Xchromosome CDS1749317 93 + 0.569892
NA Z6015 unknown protein encoded in ISEc8chromosome CDS2278037 348 + 0.586207
NA Z6046 putative terminase subunit encoded by cryptic prophage CP-933Pchromosome CDS2307933 564 - 0.549645
NA Z1958 unknown in IS629chromosome CDS1777800 327 - 0.525994
NA Z1475 putative terminase small subunit of bacteriophage BP-933Wchromosome CDS1359603 807 + 0.486989
NA Z5096 unknown protein encoded by ISEc8 within prophage CP-933Lchromosome CDS4655042 402 + 0.514925
NA Z1199 unknown in ISchromosome CDS1120993 327 - 0.519878
NA Z4313 putative pathogenicity island integrasechromosome CDS3919545 1266 + 0.475513
NA Z1448 regulatory protein Cro of bacteriophage BP-933Wchromosome CDS1343689 228 + 0.421053
NA Z1933 unknown in IS629chromosome CDS1754793 327 + 0.541284
NA Z1882 putative DNA packaging protein of prophage CP-933Xchromosome CDS1714058 546 + 0.525641
NA Z1222 unknown in ISchromosome CDS1143866 327 - 0.519878
NA Z1150 unknown in ISchromosome CDS1083803 342 - 0.461988
NA Z3095 putative transposase encoded within prophage CP-933Uchromosome CDS2761893 867 + 0.538639
NA Z4340 unknown protein encoded by ISEc8chromosome CDS3940813 1404 + 0.551994
NA Z4064 orf; hypothetical proteinchromosome CDS3666119 924 - 0.520563
NA Z2791 orf, hypothetical proteinchromosome CDS2516205 408 + 0.541667
NA Z1559 putative P4-family integrasechromosome CDS1454402 1203 + 0.489609
NA Z2981 IS629 transposase encoded within prophage CP-933Tchromosome CDS2678810 690 - 0.54058
NA Z3333 unknown protein encoded within prophage CP-933Vchromosome CDS2988549 564 - 0.544326
NA Z2771 putative excinuclease subunitchromosome CDS2498230 888 + 0.513514
NA Z2130 putative IS encoded protein encoded within prophage CP-933Ochromosome CDS1907373 1539 + 0.584795
NA Z4317 unknown protein encoded by ISEc8chromosome CDS3922839 1449 + 0.567288
NA Z0395 chromosome CDS371783 384 - 0.416667
NA Z1657 putative DNA repair protein, RADC familychromosome CDS1536985 477 + 0.584906
NA Z1133 partial putative transposasechromosome CDS1072481 312 - 0.487179
NA Z1835 putative integrase of prophage CP-933Cchromosome CDS1678706 1251 + 0.513189
NA Z2111 putative transposase encoded within prophage CP-933Ochromosome CDS1896975 648 + 0.541667
NA Z5878 putative integrasechromosome CDS5377177 1950 + 0.462564
NA Z2074 putative IS encoded protein within CP-933Ochromosome CDS1871964 327 - 0.538226
NA Z2060 putative DNA adenine methyltransferase encoded by prophage CP-933Ochromosome CDS1864783 1059 + 0.534467
NA Z5899 putative ATP-dependent helicasechromosome CDS5403784 2859 + 0.501924
NA Z1163 unknown in ISEc8chromosome CDS1092705 363 - 0.53719
NA Z5491 orf; hypothetical protein in IS (partial)chromosome CDS5002429 186 - 0.521505
NA Z5890 partial putative integrasechromosome CDS5387445 906 + 0.481236
NA Z0394 chromosome CDS371604 159 - 0.446541
NA Z4375 orf, hypothetical proteinchromosome CDS3975492 483 - 0.52795
NA Z1772 unknown protein encoded by prophage CP-933Nchromosome CDS1630668 426 + 0.528169
NA Z1632 IS1 protein InsBchromosome CDS1511474 504 - 0.531746
NA Z3622 putative resolvasechromosome CDS3270707 627 + 0.475279
NA Z1198 putative transposasechromosome CDS1120106 888 - 0.533784
NA Z1161 unknown in ISEc8chromosome CDS1090149 1614 + 0.542751
NA Z2253 H repeat-associated protein of Rhs elementchromosome CDS2036554 612 - 0.416667
NA Z3943 chromosome CDS3563184 1326 - 0.313726
NA Z2110 putative transposase encoded within prophage CP-933Ochromosome CDS1896409 327 + 0.541284
NA Z5098 unknown protein encoded by ISEc8 within prophage CP-933Lchromosome CDS4655837 1539 + 0.584795
NA Z1572 partial putative transposasechromosome CDS1468088 312 - 0.487179
NA Z5902 putative helicasechromosome CDS5417917 2115 + 0.498345
NA Z4803 putative ATP-dependent DNA helicase (together with adjacent 3 orfs)chromosome CDS4361449 609 - 0.505747
NA Z1853 unknown protein encoded by prophage CP-933Cchromosome CDS1690861 357 + 0.551821
NA Z1957 transposase for IS629chromosome CDS1776913 891 - 0.530864
NA Z1323 putative integrase for cryptic prophage CP-933Mchromosome CDS1250521 1020 - 0.445098
NA Z1561 chromosome CDS1457976 102 + 0.470588
NA Z1927 unknown protein encoded by ISEc8 in prophage CP-933Xchromosome CDS1748655 459 + 0.511983
NA Z4315 unknown protein encoded by ISEc8chromosome CDS3921801 675 + 0.485926
NA Z1192 IS1 protein InsBchromosome CDS1115867 504 - 0.531746
NA Z1217 putative DNA repair protein, RADC familychromosome CDS1141379 477 + 0.589099
NA Z0067 chromosome CDS65291 2907 - 0.550052
NA Z1845 putative single stranded DNA-binding protein of prophage CP-933Cchromosome CDS1685186 411 + 0.586375
NA Z3024 orf, hypothetical proteinchromosome CDS2712198 279 + 0.462366
NA Z4200 chromosome CDS3802780 1029 - 0.391642
NA Z4314 unknown protein encoded by ISEc8chromosome CDS3920927 786 - 0.562341
NA Z2982 unknown protein of IS629 encoded within prophage CP-933Tchromosome CDS2679499 327 - 0.53211
NA Z4334 IS629 transposasechromosome CDS3936688 648 - 0.541667
NA Z0946 putative integrase encoded by prophage CP-933K; partialchromosome CDS892845 864 - 0.450231
NA Z0365 unknown protein encoded in ISEc8chromosome CDS345429 402 + 0.514925
NA Z2082 putative transposase within CP-933O; partialchromosome CDS1877451 882 + 0.547619
NA Z5114 chromosome CDS4671890 384 + 0.333333
NA Z2375 orf; hypothetical protein in IS629 within prophage CP-933Rchromosome CDS2142020 327 + 0.541284
NA Z1207 partial transposasechromosome CDS1129534 249 - 0.506024
NA Z0854 chromosome CDS816295 858 + 0.432401
NA Z3155 unknown protein encoded by ISEc8chromosome CDS2812337 348 + 0.583333
NA Z1660 transposase for IS629chromosome CDS1538585 888 - 0.533784
NA Z4802 putative ATP-dependent DNA helicase (together with adjacent 3 orfs)chromosome CDS4361063 390 - 0.482051
NA Z0324 integrase protein for prophage CP-933Ichromosome CDS310756 1233 + 0.4485
NA Z2127 putative IS encoded protein encoded within prophage CP-933Ochromosome CDS1906763 561 + 0.57754
NA Z2894 orf, hypothetical proteinchromosome CDS2603158 663 + 0.518854
NA Z1647 partial transposasechromosome CDS1525140 249 - 0.506024
NA Z5880 putative transposasechromosome CDS5379892 648 + 0.541667
NA Z0328 unknown protein encoded in prophage CP-933Ichromosome CDS313449 633 + 0.2891
NA Z2806 putative transposasechromosome CDS2529766 888 + 0.539414
NA Z3759 putative DNA replication factorchromosome CDS3404054 747 - 0.53012
NA Z0700 putative receptorchromosome CDS664295 1137 - 0.414248
NA Z1120 putative P4-family integrasechromosome CDS1058795 1203 + 0.489609
NA Z2376 putative IS629 transposase within prophage CP-933Rchromosome CDS2142587 648 + 0.541667
NA Z3093 unknown in IS629 encoded within prophage CP-933Uchromosome CDS2761545 327 + 0.541284
NA Z2084 putative integrase within CP-933O; partialchromosome CDS1878802 468 - 0.463675
NA Z5885 putative resolvasechromosome CDS5383211 576 + 0.520833
NA Z1929 unknown protein encoded by ISEc8 in prophage CP-933Xchromosome CDS1749459 1539 + 0.584795
NA Z2396 putative DNA replication factor encoded by prophage CP-933Rchromosome CDS2155159 747 - 0.54083
NA Z1020 putative ATP-dependent helicasechromosome CDS959163 2151 + 0.537424
NA Z5097 unknown protein encoded by ISEc8 within prophage CP-933Lchromosome CDS4655440 348 + 0.586207
NA Z4337 unknown protein encoded by ISEc8chromosome CDS3938489 1539 + 0.584795
NA Z2078 putative transposase within CP-933Ochromosome CDS1874668 423 + 0.51773
NA Z4503 putative transposasechromosome CDS4101042 648 + 0.541667
NA Z5200 chromosome CDS4743737 1989 - 0.363499
NA Z4801 putative ATP-dependent DNA helicase (together with adjacent 3 orfs)chromosome CDS4360085 975 - 0.482051
NA Z1802 unknown protein encoded by prophage CP-933Nchromosome CDS1648245 564 + 0.542553
NA Z2101 putative endonuclease encoded within prophage CP-933Ochromosome CDS1890730 306 + 0.519608
NA Z1598 unknown in ISEc8chromosome CDS1484953 426 + 0.485915
NA Z0322 unknown protein encoded by IS2chromosome CDS309886 366 - 0.483607
NA Z5117 chromosome CDS4673888 276 - 0.318841
NA Z6016 unknown protein encoded in ISEc8chromosome CDS2278434 1539 + 0.584795
NA Z3348 unknown protein encoded within prophage CP-933Vchromosome CDS2998872 432 - 0.421296
NA Z1162 unknown in ISEc8chromosome CDS1091766 858 - 0.541958
NA Z0366 unknown protein encoded in ISEc8chromosome CDS345827 348 + 0.586207
NA Z3154 unknown protein encoded by ISEc8chromosome CDS2811939 402 + 0.512438
NA Z3115 putative endonuclease encoded within prophage CP-933Uchromosome CDS2775266 360 - 0.536111
NA Z1573 unknown in IS600chromosome CDS1468539 819 + 0.514042
NA Z1208 unknown in putative ISEc8chromosome CDS1129836 426 + 0.514085
NA Z2917 dATP pyrophosphohydrolasechromosome CDS2625318 453 - 0.523179
NA Z1131 unknown protein encoded in ISEc8chromosome CDS1070093 1539 - 0.584795
NA Z0367 unknown protein encoded in ISEc8chromosome CDS346224 1539 + 0.584795
NA Z3299 unknown protein in IS629chromosome CDS2961936 327 - 0.541284
NA Z1871 unknown protein encoded by prophage CP-933Xchromosome CDS1706125 1527 + 0.355599
NA Z4318 chromosome CDS3924088 945 - 0.495238
NA Z2072 putative IS encoded proteinen coded by prophage CP-933Ochromosome CDS1870229 348 + 0.586207
NA Z1357 unknown protein encoded by cryptic prophage CP-933Mchromosome CDS1274037 564 + 0.547872
NA Z1344 putative endonuclease of cryptic prophage CP-933Mchromosome CDS1265578 375 + 0.522667
NA Z2563 putative transposase (partial)chromosome CDS2274294 183 + 0.513661
NA Z1589 unknown in ISchromosome CDS1479410 342 - 0.461988
NA Z1160 unknown in ISEc8chromosome CDS1089768 351 + 0.529915
NA Z2804 unknown protein encoded within IS629chromosome CDS2529440 327 + 0.53211
NA Z1134 unknown in IS600chromosome CDS1072932 819 + 0.514042
NA Z1642 chromosome CDS1518939 2136 + 0.416667
alkA Z3237 3-methyl-adenine DNA glycosylase II, induciblechromosome CDS2892749 849 - 0.551237
alkB Z3470 DNA repair system specific for alkylated DNAchromosome CDS3112947 651 - 0.525346
dam Z4740 DNA adenine methylasechromosome CDS4294495 837 - 0.491039
dbpA Z2417 ATP-dependent RNA helicasechromosome CDS2166810 1374 - 0.517467
dcm Z3054 DNA cytosine methylasechromosome CDS2730659 1419 - 0.522199
deaD Z4523 inducible ATP-independent RNA helicasechromosome CDS4115684 1941 - 0.548686
dinJ Z0285 damage-inducible protein Jchromosome CDS284208 261 - 0.475096
dinP Z0292 damage-inducible protein P; putative tRNA synthetasechromosome CDS288785 1056 + 0.538826
dnaA Z5193 DNA biosynthesis; initiation of chromosome replication; can be transcription regulatorchromosome CDS4737542 1404 - 0.536325
dnaB Z5650 replicative DNA helicase; part of primosomechromosome CDS5147453 1416 + 0.533898
dnaC Z5961 chromosome replication; initiation and chain elongationchromosome CDS5488590 738 - 0.509485
dnaE Z0196 DNA polymerase III, alpha subunitchromosome CDS208470 3483 + 0.549526
dnaG Z4419 DNA biosynthesis; DNA primasechromosome CDS4017953 1746 + 0.521191
dnaN Z5192 DNA polymerase III, beta-subunitchromosome CDS4736437 1101 - 0.545867
dnaQ Z0241 DNA polymerase III, epsilon subunitchromosome CDS239618 732 + 0.510929
dnaX Z0587 DNA polymerase III, tau and gamma subunits; DNA elongation factor IIIchromosome CDS557990 1932 + 0.575569
endA Z4290 DNA-specific endonuclease Ichromosome CDS3899154 708 + 0.54661
exo Z4115 5'-3' exonucleasechromosome CDS3720663 846 + 0.524823
fimB Z5910 recombinase involved in phase variation; regulator for fimAchromosome CDS5425868 603 + 0.431177
fimE Z5911 recombinase involved in phase variation; regulator for fimAchromosome CDS5426948 597 + 0.467337
fis Z4621 site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcriptionchromosome CDS4213449 297 + 0.47138
gyrA Z3484 DNA gyrase, subunit A, type II topoisomerasechromosome CDS3133832 2628 - 0.540715
gyrB Z5190 DNA gyrase subunit B, type II topoisomerase, ATPase activitychromosome CDS4732921 2415 - 0.549068
helD Z1313 DNA helicase IVchromosome CDS1243165 2055 + 0.527981
himA Z2741 integration host factor (IHF), alpha subunit; site specific recombinationchromosome CDS2470169 300 - 0.496667
himD Z1258 integration host factor (IHF), beta subunit; site-specific recombinationchromosome CDS1182694 285 + 0.491228
holA Z0787 DNA polymerase III, delta subunitchromosome CDS751713 1032 - 0.523256
holB Z1738 DNA polymerase III, delta prime subunitchromosome CDS1599943 1005 + 0.546269
holC Z5871 DNA polymerase III, chi subunitchromosome CDS5369237 444 - 0.542793
holD Z5973 DNA polymerase III, psi subunitchromosome CDS5495843 414 + 0.577295
hrpA Z2313 helicase, ATP-dependentchromosome CDS2085685 3846 - 0.537701
hrpB Z0159 helicase, ATP-dependentchromosome CDS166383 2475 + 0.565657
hupA Z5576 DNA-binding protein HU-alpha (HU-2)chromosome CDS5077852 273 + 0.483516
hupB Z0547 DNA-binding protein HU-beta, NS1 (HU-1)chromosome CDS527505 273 + 0.494505
intC Z3613 putative prophage integrasechromosome CDS3263064 1194 + 0.474874
intH Z0307 putative integrase for prophage CP-933Hchromosome CDS300073 975 - 0.474872
intL Z5087 putative integrase for prophage 933L and the LEE pathogenicity islandchromosome CDS4650042 1182 + 0.476311
intN Z1764 partial integrase for prophage CP-933Nchromosome CDS1626722 1119 - 0.453083
intO Z2036 putative integrase for prophage CP-933Ochromosome CDS1849488 1131 - 0.463307
intP_1 Z2566 integrase fragment, cryptic prophage CP-933Pchromosome CDS2329466 171 + 0.45614
intP_2 Z2568 integrase fragment, cryptic prophage CP-933Pchromosome CDS2329684 489 + 0.406953
intR Z2415 putative integrase for prophage CP-933Rchromosome CDS2164459 1236 + 0.438511
intT Z2966 integrase for prophage CP-933Tchromosome CDS2668339 1002 - 0.446108
intU Z3130 putative integrase for prophage CP-933Uchromosome CDS2787326 1023 + 0.434018
intV Z3375 putative integrase for prophage CP-933Vchromosome CDS3013728 1287 + 0.433566
intW Z1424 integrase for bacteriophage BP-933Wchromosome CDS1330857 1335 - 0.47191
lig Z3677 DNA ligasechromosome CDS3322386 2016 - 0.542659
mfd Z1754 transcription-repair coupling factor; mutation frequency declinechromosome CDS1614739 3447 - 0.549173
mutH Z4149 methyl-directed mismatch repairchromosome CDS3759360 690 + 0.536232
mutL Z5777 enzyme in methyl-directed mismatch repairchromosome CDS5281122 1848 + 0.564394
mutM Z5059 formamidopyrimidine DNA glycosylasechromosome CDS4623185 810 - 0.538272
mutS Z4043 methyl-directed mismatch repairchromosome CDS3648075 2562 + 0.563622
mutT Z0109 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversionschromosome CDS115650 399 + 0.483709
mutY Z4306 adenine glycosylase; G.C--> T.A transversionschromosome CDS3911919 1053 + 0.554606
nei Z0865 endonuclease VIII and DNA N-glycosylase with an AP lyase activitychromosome CDS824235 792 + 0.521465
nfi Z5574 endonuclease V (deoxyinosine 3'endoduclease)chromosome CDS5076361 672 + 0.584821
nfo Z3416 endonuclease IVchromosome CDS3057087 858 + 0.524476
nth Z2644 endonuclease III; specific for apurinic and/or apyrimidinic siteschromosome CDS2386442 636 + 0.488994
ogt Z2432 O-6-alkylguanine-DNA/cysteine-proteinmethyltrans ferasechromosome CDS2178771 516 + 0.531008
parC Z4373 DNA topoisomerase IV subunit Achromosome CDS3971380 2259 - 0.546702
parE Z4387 DNA topoisomerase IV subunit Bchromosome CDS3986913 1893 - 0.538827
phrB Z0859 deoxyribodipyrimidine photolyase (photoreactivation)chromosome CDS817807 1419 + 0.536293
pinH Z0318 DNA invertase from prophage CP-933Hchromosome CDS306856 591 + 0.497462
polA Z5398 DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonucleasechromosome CDS4911682 2787 + 0.520273
polB Z0068 DNA polymerase IIchromosome CDS68361 2352 - 0.555697
priA Z5482 primosomal protein N'(= factor Y)(putative helicase)chromosome CDS4994868 2199 - 0.56935
priB Z5810 primosomal replication protein Nchromosome CDS5309232 315 + 0.51746
priC Z0584 primosomal replication protein N''chromosome CDS556183 528 - 0.581439
radC Z5062 DNA repair proteinchromosome CDS4624733 675 - 0.477037
recA Z4002 DNA strand exchange and renaturation, DNA-dependent ATPase, DNA-and ATP-dependent coproteasechromosome CDS3613927 1062 - 0.53484
recB Z4137 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleasechromosome CDS3742159 3543 - 0.544736
recC Z4139 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleasechromosome CDS3748758 3369 - 0.538736
recD Z4136 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleasechromosome CDS3740333 1827 - 0.550629
recF Z5191 ssDNA and dsDNA binding, ATP bindingchromosome CDS4735364 1074 - 0.547486
recG Z5078 DNA helicase, resolution of Holliday junctions, branch migrationchromosome CDS4638022 2115 + 0.568794
recJ Z4230 ssDNA exonuclease, 5'--> 3' specificchromosome CDS3841830 1734 - 0.569781
recN Z3909 protein used in recombination and DNA repairchromosome CDS3541653 1662 + 0.519856
recO Z3846 protein interacts with RecR and possibly RecF proteinschromosome CDS3491964 729 - 0.537723
recQ Z5343 ATP-dependent DNA helicasechromosome CDS4870932 1836 + 0.550109
recR Z0589 recombination and repairchromosome CDS560303 606 + 0.572607
recT Z2410 recombinase, DNA renaturation protein encoded by prophage CP-933Rchromosome CDS2162902 810 + 0.461728
rep Z5288 rep helicase, a single-stranded DNA dependent ATPasechromosome CDS4823068 2022 + 0.534125
rhlB Z5290 putative ATP-dependent RNA helicasechromosome CDS4826756 1266 - 0.525276
rhlE Z1017 putative ATP-dependent RNA helicasechromosome CDS954892 1368 + 0.562865
rnhA Z0239 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replicationchromosome CDS239086 468 - 0.50641
rnhB Z0195 RNAse HII, degrades RNA of DNA-RNA hybridschromosome CDS207837 597 + 0.566164
rnt Z2671 RNase T, degrades tRNAchromosome CDS2403267 648 + 0.544753
rus Z1873 endodeoxyribonuclease RUS (Holliday junction resolvase) of prophage CP-933Xchromosome CDS1709058 363 + 0.53719
ruvA Z2913 Holliday junction helicase subunit B; branch migration; repairchromosome CDS2622503 612 - 0.534314
ruvB Z2912 Holliday junction helicase subunit A; branch migration; repairchromosome CDS2621484 1011 - 0.526212
ruvC Z2915 Holliday junction nuclease; resolution of structures; repairchromosome CDS2623993 522 - 0.559387
sbcB Z3173 exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterasechromosome CDS2825476 1428 + 0.498599
sbcC Z0495 ATP-dependent dsDNA exonucleasechromosome CDS474593 3144 - 0.542303
sbcD Z0496 ATP-dependent dsDNA exonucleasechromosome CDS477733 1203 - 0.532003
sbmC Z3170 SbmC proteinchromosome CDS2823508 474 - 0.470464
seqA Z0836 negative modulator of initiation of replicationchromosome CDS792794 546 + 0.492674
smf Z4656 chromosome CDS4234670 1125 - 0.508444
srmB Z3859 ATP-dependent RNA helicasechromosome CDS3503108 1335 + 0.546067
ssb Z5658 ssDNA-binding proteinchromosome CDS5157257 537 + 0.579143
tag Z4974 3-methyladenine DNA glycosylase Ichromosome CDS4527895 564 + 0.508865
tatD Z5361 chromosome CDS4888615 795 + 0.542138
topA Z2536 DNA topoisomerase type I, omega proteinchromosome CDS2252824 2598 - 0.520015
topB Z2796 DNA topoisomerase IIIchromosome CDS2519714 1962 - 0.551988
tra8_2 Z2993 IS30 transposase encoded within prophage CP-933Tchromosome CDS2687188 1191 - 0.459278
tra8_3 Z3936 IS30 transposasechromosome CDS3557855 756 + 0.466931
umuC Z1947 SOS mutagenesis and repairchromosome CDS1764079 1269 + 0.508274
ung Z3864 uracil-DNA-glycosylasechromosome CDS3506790 690 + 0.527536
uvrA Z5657 excision nuclease subunit Achromosome CDS5154180 2823 - 0.558271
uvrB Z0998 DNA repair; excision nuclease subunit Bchromosome CDS937545 2022 + 0.530168
uvrC Z3001 excinuclease ABC, subunit C; repair of UV damage to DNAchromosome CDS2690356 1767 - 0.517827
uvrD Z5330 DNA-dependent ATPase I and helicase IIchromosome CDS4860404 2163 + 0.577901
vsr Z3053 DNA mismatch endonuclease, patch repair proteinchromosome CDS2730208 471 - 0.562633
waaP Z5054 putative LPS biosynthesis enzymechromosome CDS4618000 807 - 0.473358
wbdQ Z3196 GDP-mannose mannosylhydrolasechromosome CDS2848478 510 - 0.380392
wcaH Z3215 GDP-mannose mannosyl hydrolasechromosome CDS2871329 483 - 0.556936
xerC Z5328 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell divisionchromosome CDS4858708 897 + 0.540691
xerD Z4232 site-specific recombinasechromosome CDS3844304 897 - 0.529543
xseA Z3773 exonuclease VII, large subunitchromosome CDS3420210 1371 + 0.533187
xseB Z0525 exonuclease VII, small subunitchromosome CDS507156 243 - 0.555556
xthA Z2781 exonuclease IIIchromosome CDS2507143 807 + 0.536555
yacH Z0127 putative membrane proteinchromosome CDS133780 1854 - 0.539374
yafM Z0288 orf, hypothetical proteinchromosome CDS285603 297 + 0.454545
yaiD Z0492 orf, hypothetical proteinchromosome CDS471196 912 - 0.514254
ybaV Z0549 orf, hypothetical proteinchromosome CDS529992 372 + 0.545699
ybaZ Z0566 orf, hypothetical proteinchromosome CDS542050 372 - 0.543011
ybjD Z1110 orf, hypothetical proteinchromosome CDS1049208 1659 + 0.528632
ycaJ Z1238 putative polynucleotide enzymechromosome CDS1158329 1344 + 0.531994
ycfH Z1739 orf, hypothetical proteinchromosome CDS1600958 798 + 0.512531
yeaB Z2856 orf, hypothetical proteinchromosome CDS2573203 579 + 0.542314
yejH Z3443 putative ATP-dependent helicasechromosome CDS3086831 1761 + 0.530948
yfaO Z3509 orf, hypothetical proteinchromosome CDS3165023 426 + 0.481221
yffH Z3723 orf, hypothetical proteinchromosome CDS3368861 576 - 0.482639
yfiL Z3895 orf, hypothetical proteinchromosome CDS3531289 405 + 0.446914
ygdP Z4147 putative invasion proteinchromosome CDS3758145 531 - 0.493409
ygjF Z4421 orf, hypothetical proteinchromosome CDS4021813 507 - 0.526627
yhbQ Z4516 orf, hypothetical proteinchromosome CDS4109680 303 + 0.544554
yhdJ Z4622 putative methyltransferasechromosome CDS4213824 891 + 0.47587
yhhF Z4839 orf, hypothetical proteinchromosome CDS4390864 597 + 0.537688
yicF Z5073 putative enzymechromosome CDS4632333 1689 - 0.527531
yjaD Z5571 orf, hypothetical proteinchromosome CDS5074474 774 + 0.5323
yjjV Z5980 chromosome CDS5501665 684 + 0.555556
yqgF Z4294 orf, hypothetical proteinchromosome CDS3902307 417 + 0.527578
yqiE Z4391 orf, hypothetical proteinchromosome CDS3990690 630 - 0.501587
yraN Z4507 orf, hypothetical proteinchromosome CDS4105108 396 + 0.545455
yrdD Z4654 putative DNA topoisomerasechromosome CDS4233654 519 - 0.499037
yrfE Z4751 orf, hypothetical proteinchromosome CDS4305005 561 - 0.508021