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2024-04-29 04:19:20

Gene list

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COG category: Replication, recombination and repair
Organism: Colwellia psychrerythraea 34H, 34H; BAA-681

Number of genes found: 198

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Colwellia psychrerythraea 34H, 34H; BAA-681
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CPS_1896 ISCps9, transposase orfB, truncatedchromosome CDS1956282 801 + 0.398252
NA CPS_4237 RecQ domain proteinchromosome CDS4462873 2073 - 0.387844
NA CPS_3404 Snf2 family proteinchromosome CDS3530914 3405 + 0.380323
NA CPS_0367 putative phage replication initiation factorchromosome CDS372379 1434 - 0.401674
NA CPS_3131 phage SPO1 DNA polymerase-related proteinchromosome CDS3266737 579 + 0.442142
NA CPS_2857 ISCps9, transposase orfBchromosome CDS2986149 888 - 0.403153
NA CPS_3886 ATP-dependent helicasechromosome CDS4058349 1944 - 0.40535
NA CPS_0156 putative methyltransferasechromosome CDS166384 639 - 0.383412
NA CPS_3121 ISCps9, transposase orfAchromosome CDS3261491 375 + 0.373333
NA CPS_0152 hypothetical proteinchromosome CDS161228 1821 + 0.345964
NA CPS_4852 ISCps5, transposasechromosome CDS5144483 1257 + 0.386635
NA CPS_2418 putative ATP-dependent DNA helicasechromosome CDS2529059 1869 + 0.325843
NA CPS_2963 ISCps9, transposase orfAchromosome CDS3103483 375 - 0.373333
NA CPS_0155 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS165803 549 - 0.393443
NA CPS_0022 putative DNA processing protein DprAchromosome CDS26651 1152 + 0.40191
NA CPS_3967 conserved hypothetical proteinchromosome CDS4156045 1110 - 0.383784
NA CPS_2742 ISCps7, transposasechromosome CDS2857807 954 + 0.386792
NA CPS_1686 ISCps9, transposase orfBchromosome CDS1728178 888 + 0.403153
NA CPS_2410 ISCps2, transposase orfAchromosome CDS2521493 297 - 0.400673
NA CPS_2243 ATP-dependent helicase HrpAchromosome CDS2343055 4128 + 0.382267
NA CPS_3321 ISCps4, transposasechromosome CDS3444695 1245 + 0.396787
NA CPS_1302 putative helicasechromosome CDS1342562 1551 + 0.4049
NA CPS_0780 exonucleasechromosome CDS799355 612 + 0.393791
NA CPS_2172 ISCps8, transposasechromosome CDS2274410 1155 + 0.408658
NA CPS_2015 site-specific recombinase, phage integrase familychromosome CDS2088172 1173 + 0.358056
NA CPS_3353 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS3479997 849 + 0.404005
NA CPS_2959 ISCps3, transposase orfAchromosome CDS3101283 363 - 0.404959
NA CPS_2408 conserved domain proteinchromosome CDS2520332 153 + 0.352941
NA CPS_3401 ATP-dependent RNA helicase, DEAD box familychromosome CDS3528626 1299 - 0.425712
NA CPS_3615 MutT/nudix family proteinchromosome CDS3752348 576 + 0.395833
NA CPS_0490 putative site-specific recombinasechromosome CDS493953 2046 + 0.308895
NA CPS_1804 protein kinase domain proteinchromosome CDS1856341 714 - 0.358543
NA CPS_2416 DNA-binding proteinchromosome CDS2525968 804 + 0.354478
NA CPS_2955 hypothetical proteinchromosome CDS3096104 1467 - 0.355147
NA CPS_1822 hypothetical proteinchromosome CDS1872635 720 + 0.326389
NA CPS_1109 hydrolase, TatD familychromosome CDS1132578 903 - 0.395349
NA CPS_2062 site-specific recombinase, phage integrase familychromosome CDS2143684 597 - 0.345059
NA CPS_1707 putative protein kinasechromosome CDS1752024 1836 + 0.398148
NA CPS_2958 ISCps3, transposase orfBchromosome CDS3100465 888 - 0.413288
NA CPS_2566 hypothetical proteinchromosome CDS2670395 2718 + 0.35872
NA CPS_3194 conserved hypothetical proteinchromosome CDS3324669 708 - 0.368644
NA CPS_3059 ISCps4, transposasechromosome CDS3195809 1245 + 0.395984
NA CPS_1125 ATP-dependent RNA helicase, DEAD box familychromosome CDS1147766 1401 + 0.401856
NA CPS_3684 conserved hypothetical proteinchromosome CDS3828936 1689 + 0.365305
NA CPS_1289 ISCps2, transposase orfBchromosome CDS1332738 819 - 0.404151
NA CPS_2305 hydrolase, TatD familychromosome CDS2403802 768 + 0.38151
NA CPS_2417 conserved hypothetical proteinchromosome CDS2526811 2247 + 0.342234
NA CPS_1685 ISCps9, transposase orfAchromosome CDS1727873 375 + 0.373333
NA CPS_3336 conserved hypothetical proteinchromosome CDS3460595 456 - 0.385965
NA CPS_1590 ATP-dependent RNA helicase, DEAD box familychromosome CDS1635005 1368 + 0.383772
NA CPS_3583 putative methylated-DNA binding proteinchromosome CDS3720228 378 - 0.407407
NA CPS_1794 protein kinase domain proteinchromosome CDS1835804 684 + 0.353801
NA CPS_2858 ISCps9, transposase orfAchromosome CDS2986967 375 - 0.373333
NA CPS_0895 ISCps3, transposase orfAchromosome CDS898283 363 - 0.404959
NA CPS_0501 haemagglutinin associated proteinchromosome CDS504750 693 - 0.330447
NA CPS_2951 DNA repair protein, RadC family proteinchromosome CDS3092249 477 + 0.392034
NA CPS_2945 putative DEAD/DEAH box helicasechromosome CDS3083918 2532 - 0.348341
NA CPS_4949 serine/threonine protein kinasechromosome CDS5249999 1833 - 0.403164
NA CPS_1495 hypothetical proteinchromosome CDS1537131 378 - 0.31746
NA CPS_1290 ISCps2, transposase orfAchromosome CDS1333601 297 - 0.393939
NA CPS_1489 conserved hypothetical proteinchromosome CDS1531755 462 + 0.378788
NA CPS_3998 site-specific recombinase, phage integrase family, truncatedchromosome CDS4197953 225 - 0.404444
NA CPS_2658 ATP-dependent RNA helicase, DEAD box familychromosome CDS2770110 1200 + 0.376667
NA CPS_2953 site-specific recombinase, phage integrase familychromosome CDS3093393 561 + 0.370766
NA CPS_0042 ATP-dependent RNA helicase, DEAD box familychromosome CDS42397 1263 + 0.372922
NA CPS_3758 putative primosomal replication protein N''chromosome CDS3920249 684 + 0.361111
NA CPS_2946 SNF2 family proteinchromosome CDS3086449 3075 - 0.354797
NA CPS_0188 putative helicasechromosome CDS200194 2367 + 0.411069
NA CPS_4987 conserved hypothetical proteinchromosome CDS5303600 732 + 0.375683
NA CPS_2917 site-specific recombinase, phage integrase familychromosome CDS3050704 1248 + 0.404647
NA CPS_0887 putative phage replication initiation proteinchromosome CDS894216 1434 - 0.402371
NA CPS_0386 conserved hypothetical proteinchromosome CDS387059 1374 + 0.411208
NA CPS_2616 hypothetical proteinchromosome CDS2718571 3732 + 0.364148
NA CPS_4955 exonuclasechromosome CDS5258738 687 + 0.394469
NA CPS_3122 ISCps9, transposase orfBchromosome CDS3261796 888 + 0.403153
NA CPS_4433 conserved hypothetical protein TIGR00252chromosome CDS4673524 390 + 0.35641
NA CPS_1308 endonuclease/exonuclease/phosphatase family proteinchromosome CDS1347758 1233 - 0.388483
NA CPS_3670 protein kinase domain proteinchromosome CDS3812919 2346 + 0.368286
NA CPS_0999 serine/threonine protein kinase domain proteinchromosome CDS1019397 2691 + 0.371981
NA CPS_2355 site-specific recombinase, phage integrase familychromosome CDS2448298 1005 - 0.391045
NA CPS_3374 putative helicasechromosome CDS3503664 3054 + 0.389653
NA CPS_3375 ISCps6, transposasechromosome CDS3507040 1434 - 0.438633
NA CPS_2634 extracellular ribonuclease/nuclease fusion proteinchromosome CDS2734836 3933 - 0.391559
NA CPS_0900 site-specific recombinase, phage integrase familychromosome CDS901027 1005 + 0.337313
NA CPS_0894 ISCps3, transposase orfBchromosome CDS897465 888 - 0.413288
NA CPS_0377 ISCps1, transposasechromosome CDS378402 1029 + 0.394558
NA CPS_0024 topoisomerase DNA-binding C4 zinc finger domain proteinchromosome CDS28415 561 + 0.379679
NA CPS_1157 MutT/NUDIX family proteinchromosome CDS1180358 543 - 0.401473
NA CPS_0137 single-strand binding protein family proteinchromosome CDS145388 699 - 0.354793
NA CPS_4401 endo/excinuclease amino terminal domain proteinchromosome CDS4636231 288 + 0.413194
NA CPS_4217 oxidoreductase, 2OG-Fe(II) oxygenase familychromosome CDS4439697 576 - 0.402778
NA CPS_0354 site-specific recombinase, phage integrase familychromosome CDS364395 1068 + 0.36985
NA CPS_0184 site-specific recombinase, phage integrase familychromosome CDS194250 1449 + 0.41891
NA CPS_1152 conserved hypothetical proteinchromosome CDS1173869 990 - 0.361616
NA CPS_2629 site-specific recombinase, phage integrase familychromosome CDS2732472 1257 + 0.377088
NA CPS_1251 conserved hypothetical protein TIGR00250chromosome CDS1282425 447 - 0.407159
NA CPS_0787 transposase, IS110 family, truncatedchromosome CDS806562 276 - 0.431159
NA CPS_0149 leucine-rich repeat proteinchromosome CDS158416 1311 - 0.384439
NA CPS_2141 comE domain proteinchromosome CDS2241894 339 + 0.359882
NA CPS_0183 DNA repair protein RadC, n-terminal fragmentchromosome CDS193642 495 + 0.375758
NA CPS_1418 ATP-dependent RNA helicase, DEAD box familychromosome CDS1457739 1206 + 0.397181
NA CPS_3595 MutT/nudix family proteinchromosome CDS3732698 1047 - 0.410697
NA CPS_1800 ISCps10, transposasechromosome CDS1852322 432 + 0.388889
NA CPS_2899 MutT/nudix family proteinchromosome CDS3033563 513 + 0.362573
NA CPS_1409 ISCps4, transposasechromosome CDS1450194 1245 - 0.396787
NA CPS_4446 conserved hypothetical proteinchromosome CDS4682776 711 - 0.369902
NA CPS_3101 endo/excinuclease amino terminal domain proteinchromosome CDS3231435 288 - 0.361111
NA CPS_3215 putative ATP-dependent RNA helicase SrmBchromosome CDS3347779 1347 - 0.370453
NA CPS_2757 ATPase, AAA familychromosome CDS2869625 1536 - 0.425781
NA CPS_0185 putative site-specific recombinase, phage integrase familychromosome CDS195714 3321 + 0.423366
NA CPS_2962 ISCps9, transposase orfBchromosome CDS3102665 888 - 0.403153
dam CPS_0475 DNA adenine methylasechromosome CDS478317 822 + 0.346715
dbpA CPS_1540 ATP-dependent RNA helicase DbpAchromosome CDS1582295 1407 + 0.398721
deaD CPS_1726 RNA helicase DeaDchromosome CDS1775322 1836 + 0.406318
dinB CPS_1040 DNA polymerase IVchromosome CDS1067233 1059 + 0.385269
dinG CPS_2272 ATP-dependent helicase DinGchromosome CDS2367295 2139 - 0.387097
dnaA CPS_0001 chromosomal replication initiator protein DnaAchromosome CDS72 1386 + 0.368687
dnaB CPS_4361 replicative DNA helicasechromosome CDS4592913 1419 - 0.422128
dnaE CPS_1570 DNA polymerase III, alpha subunitchromosome CDS1613253 3561 + 0.403819
dnaG CPS_4335 DNA primasechromosome CDS4568776 1758 - 0.4124
dnaN CPS_0002 DNA polymerase III, beta subunitchromosome CDS1496 1104 + 0.354167
dnaQ CPS_2255 DNA polymerase III, epsilon subunitchromosome CDS2353720 771 + 0.391699
dnaX CPS_3744 DNA polymerase III, gamma/tau subunitchromosome CDS3906377 2148 - 0.391993
fis CPS_0551 DNA-binding protein Fischromosome CDS549047 288 + 0.385417
gyrA CPS_2331 DNA gyrase, A subunitchromosome CDS2427346 2727 + 0.392739
gyrB CPS_0004 DNA gyrase, B subunitchromosome CDS3778 2445 + 0.37955
helD CPS_2454 helicase IVchromosome CDS2572199 3129 + 0.379035
hepA CPS_4519 RNA polymerase-associated protein HepAchromosome CDS4768647 2928 + 0.391735
holA CPS_1720 DNA polymerase III, delta subunitchromosome CDS1766654 1065 - 0.381221
holB CPS_2303 DNA polymerase III, delta prime subunitchromosome CDS2402386 996 + 0.360442
holC CPS_0739 DNA polymerase III, chi subunitchromosome CDS741391 474 - 0.407173
hrpB CPS_4302 ATP-dependent helicase HrpBchromosome CDS4530598 2538 - 0.392829
hupB1 CPS_1873 DNA-binding protein, HU familychromosome CDS1926929 276 - 0.427536
hupB2 CPS_2063 DNA-binding protein, HU familychromosome CDS2144507 276 - 0.40942
hupB3 CPS_3781 DNA-binding protein, HU familychromosome CDS3946071 273 - 0.428571
ihfA CPS_2994 integration host factor, alpha subunitchromosome CDS3138269 294 - 0.421769
ihfB CPS_2336 integration host factor, beta subunitchromosome CDS2435595 288 + 0.361111
kdkA CPS_0117 3-deoxy-D-manno-octulosonic acid kinasechromosome CDS122866 777 - 0.413127
lig CPS_4404 DNA ligase, ATP-dependentchromosome CDS4638011 879 + 0.397042
ligA CPS_3466 DNA ligase, NAD-dependentchromosome CDS3603522 2070 - 0.402899
mfd CPS_2139 transcription-repair coupling factorchromosome CDS2237155 3624 - 0.403974
mutH CPS_3626 DNA mismatch repair protein MutHchromosome CDS3763833 669 + 0.428999
mutL CPS_0323 DNA mismatch repair protein MutLchromosome CDS333383 1959 + 0.389995
mutM CPS_0212 formamidopyrimidine-DNA glycosylasechromosome CDS219444 816 + 0.421569
mutS CPS_4137 DNA mismatch repair protein MutSchromosome CDS4352552 2619 + 0.415044
mutT CPS_4453 mutator mutT proteinchromosome CDS4690027 435 - 0.416092
mutY CPS_4148 A/G-specific adenine glycosylasechromosome CDS4362430 1089 + 0.389348
nth CPS_2193 endonuclease IIIchromosome CDS2289082 663 - 0.395173
nudE CPS_0424 ADP compounds hydrolase nudEchromosome CDS429169 552 + 0.416667
nudF CPS_4180 ADP-ribose pyrophosphatasechromosome CDS4399811 645 - 0.39845
nudH CPS_3625 (di)nucleoside polyphosphate hydrolasechromosome CDS3763166 516 - 0.401163
parC CPS_4171 DNA topoisomerase IV, A subunitchromosome CDS4387770 2310 - 0.420346
parE CPS_4176 DNA topoisomerase IV, B subunitchromosome CDS4395658 1887 - 0.415474
phrB CPS_1380 deoxyribodipyrimidine photolyasechromosome CDS1420655 1413 + 0.389243
polA CPS_4978 DNA polymerase Ichromosome CDS5288747 2811 - 0.403771
polB CPS_2273 DNA polymerase IIchromosome CDS2369524 2457 + 0.366707
priA CPS_4366 primosomal protein N'chromosome CDS4597556 2211 + 0.40796
priB CPS_0416 primosomal replication protein Nchromosome CDS423069 315 + 0.393651
rdgC CPS_1204 recombination associated protein RdgCchromosome CDS1236024 924 - 0.36039
recA CPS_4134 recA proteinchromosome CDS4349468 1038 - 0.382466
recB CPS_2768 exodeoxyribonuclease V, beta subunitchromosome CDS2883240 3861 - 0.384097
recC CPS_2769 exodeoxyribonuclease V, gamma subunitchromosome CDS2887100 3597 - 0.396441
recD CPS_2767 exodeoxyribonuclease V, alpha subunitchromosome CDS2880929 2310 - 0.405195
recF CPS_0003 DNA replication and repair protein RecFchromosome CDS2635 1134 + 0.337743
recG CPS_4976 ATP-dependent DNA helicase RecGchromosome CDS5286333 2094 + 0.425979
recJ CPS_4094 single-stranded-DNA-specific exonuclease RecJchromosome CDS4308214 1755 - 0.403989
recN CPS_3825 DNA repair protein RecNchromosome CDS3992341 1686 + 0.384935
recO CPS_4120 recombination protein Ochromosome CDS4336301 711 - 0.360056
recQ CPS_0083 ATP-dependent DNA helicase RecQchromosome CDS86632 1848 + 0.416667
recR CPS_3690 recombination protein RecRchromosome CDS3835849 606 - 0.419142
rep CPS_0300 ATP-dependent DNA helicase Repchromosome CDS308267 2034 - 0.406096
rhlB CPS_0174 ATP-dependent RNA helicase RhlBchromosome CDS182390 1287 - 0.393162
rnhB CPS_1569 ribonuclease HIIchromosome CDS1612598 654 + 0.408257
rnt CPS_3473 ribonuclease Tchromosome CDS3611793 696 + 0.392241
ruvA CPS_2116 Holliday junction DNA helicase RuvAchromosome CDS2204993 636 + 0.380503
ruvB CPS_2117 Holliday junction DNA helicase RuvBchromosome CDS2205665 1014 + 0.411243
ruvC CPS_2115 crossover junction endodeoxyribonuclease RuvCchromosome CDS2204225 528 + 0.431818
sbcB CPS_2014 exodeoxyribonuclease Ichromosome CDS2086576 1464 - 0.400956
sbcC CPS_2848 exonuclease SbcCchromosome CDS2975051 3927 - 0.395467
sbcD CPS_2849 exonuclease SbcDchromosome CDS2978974 1521 - 0.429323
seqA CPS_1580 seqA proteinchromosome CDS1624503 603 + 0.374793
srmB CPS_4097 ATP-dependent RNA helicase SrmBchromosome CDS4311925 1293 + 0.390565
ssb CPS_0930 single-strand binding proteinchromosome CDS935811 702 + 0.435897
tag CPS_2351 DNA-3-methyladenine glycosylase Ichromosome CDS2447158 585 - 0.365812
tatD CPS_0167 deoxyribonuclease TatDchromosome CDS176756 813 + 0.389914
topA CPS_1197 DNA topoisomerase Ichromosome CDS1227821 2700 + 0.416296
topB CPS_4792 DNA topoisomerase IIIchromosome CDS5077284 1950 + 0.406667
umuC1 CPS_1636 umuC proteinchromosome CDS1687207 1254 + 0.409888
umuC2 CPS_2682 umuC proteinchromosome CDS2790567 1257 - 0.395386
ung CPS_4288 uracil-DNA glycosylasechromosome CDS4517517 678 - 0.40413
uvrA CPS_0920 excinuclease ABC, A subunitchromosome CDS923476 2832 - 0.412429
uvrB CPS_2887 excinuclease ABC, B subunitchromosome CDS3020946 2022 - 0.396637
uvrC CPS_3270 excinuclease ABC, C subunitchromosome CDS3399720 1920 - 0.393229
uvrD CPS_0080 DNA helicase IIchromosome CDS81800 2175 + 0.415172
xni CPS_3538 exodeoxyribonuclease IXchromosome CDS3679020 873 + 0.375716
xseA CPS_4244 exodeoxyribonuclease VII, large subunitchromosome CDS4471685 1335 + 0.379026
xseB CPS_1090 exodeoxyribonuclease VII, small subunitchromosome CDS1110413 249 - 0.369478
xth CPS_3173 exodeoxyribonuclease IIIchromosome CDS3305759 807 + 0.385378