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2024-05-05 06:12:59

Gene list

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COG category: Replication, recombination and repair
Organism: Pseudomonas fluorescens Pf-5, Pf-5

Number of genes found: 171

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas fluorescens Pf-5, Pf-5
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PFL_5789 DNA ligase, NAD-dependent, putativechromosome CDS6596455 1671 + 0.648713
NA PFL_1085 hydrolase, NUDIX familychromosome CDS1240976 600 + 0.616667
NA PFL_3234 conserved hypothetical proteinchromosome CDS3729991 207 - 0.541063
NA PFL_6102 integration host factor, beta subunit, putativechromosome CDS6932447 276 - 0.586957
NA PFL_4674 helicase, SNF2 familychromosome CDS5396984 1953 + 0.564772
NA PFL_6057 exodeoxyribonuclease III, putativechromosome CDS6879102 780 + 0.582051
NA PFL_0677 isopentenyl-diphosphate delta-isomerase, putativechromosome CDS789883 537 + 0.655493
NA PFL_5128 conserved hypothetical proteinchromosome CDS5893428 183 - 0.579235
NA PFL_3415 DNA topoisomerase I, putativechromosome CDS3933614 1038 + 0.672447
NA PFL_2699 IS66 family transposase protein, truncationchromosome CDS2974073 129 - 0.604651
NA PFL_2698 IS66 family transposase proteinchromosome CDS2973016 480 + 0.585417
NA PFL_2022 ultraviolet light resistance protein B, interruption-Cchromosome CDS2244215 1281 + 0.550351
NA PFL_2463 hydrolase, NUDIX familychromosome CDS2726969 507 - 0.674556
NA PFL_5801 ATP-dependent RNA helicase, DEAD box familychromosome CDS6608600 1869 + 0.669877
NA PFL_3160 conserved hypothetical proteinchromosome CDS3635813 273 - 0.637363
NA PFL_0783 pesticin domain proteinchromosome CDS909901 558 + 0.621864
NA PFL_3198 conserved hypothetical proteinchromosome CDS3681373 2277 - 0.666667
NA PFL_3396 cointegrate resolution protein Schromosome CDS3917997 939 - 0.650692
NA PFL_4692 ultraviolet light resistance protein B, interruption-Cchromosome CDS5421354 1272 + 0.564465
NA PFL_3697 DNA polymerase III, alpha subunit, putativechromosome CDS4289410 3105 - 0.688245
NA PFL_4406 recombination associated protein rdgCchromosome CDS5113325 921 + 0.611292
NA PFL_3655 cobalamin biosynthesis protein CobWchromosome CDS4226311 1284 - 0.657321
NA PFL_2819 prevent-host-death family proteinchromosome CDS3142923 612 + 0.589869
NA PFL_3792 DNA-cytosine methyltransferasechromosome CDS4391626 1656 + 0.61413
NA PFL_3698 conserved hypothetical proteinchromosome CDS4292511 1416 - 0.710452
NA PFL_4979 conserved domain proteinchromosome CDS5732718 2976 + 0.62332
NA PFL_4984 hypothetical proteinchromosome CDS5743437 1578 - 0.392902
NA PFL_3959 protein kinase domain proteinchromosome CDS4570790 1329 + 0.665162
NA PFL_1976 site-specific recombinase, phage integrase familychromosome CDS2207060 1143 + 0.579178
NA PFL_1258 MGMT family proteinchromosome CDS1430700 354 - 0.686441
NA PFL_6078 ppkA-related proteinchromosome CDS6899838 3030 - 0.678878
NA PFL_5412 exonucleasechromosome CDS6180767 612 - 0.638889
NA PFL_3266 hydrolase, NUDIX familychromosome CDS3771326 831 - 0.666667
NA PFL_4978 hypothetical proteinchromosome CDS5730145 939 + 0.488818
NA PFL_3013 DNA-cytosine methyltransferasechromosome CDS3467956 1185 + 0.507173
NA PFL_4251 ATP-dependent RNA helicase, DEAD box familychromosome CDS4947304 1674 - 0.62724
NA PFL_5457 DNA-3-methyladenine glycosylase, putativechromosome CDS6227566 687 + 0.617176
NA PFL_2193 hypothetical proteinchromosome CDS2448175 4494 + 0.500668
NA PFL_3042 site-specific recombinase, phage integrase familychromosome CDS3507541 942 - 0.660297
NA PFL_0517 conserved hypothetical proteinchromosome CDS602757 1455 + 0.654296
NA PFL_1057 endo/excinuclease domain proteinchromosome CDS1207220 321 + 0.641745
NA PFL_0057 radical SAM domain proteinchromosome CDS55021 1059 + 0.653447
NA PFL_4690 conserved hypothetical proteinchromosome CDS5418420 2250 + 0.573333
NA PFL_3794 site-specific recombinase, phage integrase familychromosome CDS4393772 1050 + 0.575238
NA PFL_3229 ATP-dependent DNA helicase, UvrD/Rep familychromosome CDS3722250 2235 - 0.628635
NA PFL_1952 helicase/SNF2 family domain proteinchromosome CDS2179174 2628 - 0.641553
NA PFL_1803 hydrolase, TatD familychromosome CDS2005009 786 + 0.664122
NA PFL_5831 conserved hypothetical protein TIGR00250chromosome CDS6640969 438 + 0.664384
NA PFL_0442 staphylococcal nuclease homologuechromosome CDS506700 762 + 0.658793
NA PFL_4671 single-strand binding protein, putativechromosome CDS5391609 507 + 0.548323
NA PFL_3010 site-specific recombinase, phage integrase familychromosome CDS3463166 1545 + 0.480906
NA PFL_4698 conserved hypothetical proteinchromosome CDS5428460 1461 + 0.54141
NA PFL_2390 hydrolase, NUDIX familychromosome CDS2657467 483 + 0.635611
NA PFL_4894 hydrolase, NUDIX familychromosome CDS5637430 435 - 0.650575
NA PFL_3890 hydrolase, NUDIX familychromosome CDS4490463 447 + 0.624161
NA PFL_0857 hydrolase, TatD familychromosome CDS989612 792 - 0.674242
NA PFL_5772 ATP-independent RNA helicase DbpAchromosome CDS6576787 1386 + 0.634921
NA PFL_3818 hypothetical proteinchromosome CDS4416503 390 + 0.646154
NA PFL_3009 site-specific recombinase, phage integrase familychromosome CDS3461943 1224 + 0.513072
NA PFL_1561 lipoprotein, putativechromosome CDS1762422 870 - 0.625287
NA PFL_2661 DNA-3-methyladenine glycosylasechromosome CDS2941798 612 - 0.696078
NA PFL_2409 oxidoreductase, 2OG-Fe(II) oxygenase family familychromosome CDS2675677 522 - 0.637931
NA PFL_2494 conserved hypothetical proteinchromosome CDS2760037 951 - 0.671924
NA PFL_0526 O-antigen polymerase family protein/toluene tolerance proteinchromosome CDS613283 1863 - 0.605475
NA PFL_5860 methyltransferase, putativechromosome CDS6665388 621 + 0.677939
NA PFL_5229 conserved hypothetical proteinchromosome CDS5988868 282 - 0.634752
NA PFL_0289 ATP-dependent DNA helicase, RecQ familychromosome CDS335672 1935 + 0.640827
NA PFL_1549 ATP-dependent RNA helicase SrmBchromosome CDS1737861 1422 + 0.622363
NA PFL_3699 conserved hypothetical proteinchromosome CDS4293934 618 - 0.734628
NA PFL_4977 site-specific recombinase, phage integrase familychromosome CDS5728657 1242 + 0.566828
NA PFL_4304 competence protein comEAchromosome CDS5001116 330 - 0.548485
NA PFL_0515 lipopolysaccharide core biosynthesis protein, putativechromosome CDS601274 735 + 0.616327
NA PFL_2730 nuclease SbcCD, D subunitchromosome CDS3015288 1245 - 0.688353
NA PFL_3878 ATPase, AAA familychromosome CDS4475434 1326 - 0.656863
NA PFL_5407 ATP-dependent RNA helicase, DEAD box familychromosome CDS6176104 1335 - 0.650187
NA PFL_1307 RNA polymerase-associated protein HepAchromosome CDS1479225 2850 - 0.652982
NA PFL_2506 hydrolase, NUDIX familychromosome CDS2772823 423 + 0.673759
NA PFL_4731 hydrolase, NUDIX familychromosome CDS5468575 378 + 0.634921
NA PFL_4163 protein kinasechromosome CDS4831751 6318 + 0.685343
NA PFL_1113 conserved hypothetical proteinchromosome CDS1271619 642 + 0.624611
NA PFL_1978 conserved hypothetical proteinchromosome CDS2209446 1734 - 0.61534
NA PFL_1046 ATP-dependent RNA helicase RhlBchromosome CDS1196723 1491 - 0.65057
NA PFL_3793 hypothetical proteinchromosome CDS4393336 156 + 0.544872
NA PFL_4752 site-specific recombinase, phage integrase familychromosome CDS5491834 1338 + 0.510463
NA PFL_4459 conserved hypothetical proteinchromosome CDS5167680 672 + 0.629464
NA PFL_5073 conserved hypothetical protein TIGR00252chromosome CDS5837194 372 + 0.580645
ada PFL_3409 ADA regulatory proteinchromosome CDS3928019 1086 + 0.678637
ada PFL_0379 ADA regulatory proteinchromosome CDS431232 1095 + 0.666667
algZ PFL_4498 alginate biosynthesis transcriptional activatorchromosome CDS5211118 327 + 0.565749
alkA PFL_4632 DNA-3-methyladenine glycosylase IIchromosome CDS5345294 870 - 0.687356
alkB PFL_3408 alkylated DNA repair protein AlkBchromosome CDS3927253 681 + 0.687225
b1345 PFL_1843 integrasechromosome CDS2044797 465 - 0.554839
dinG PFL_1279 ATP-dependent helicase DinGchromosome CDS1446919 2145 + 0.648485
dinP PFL_1254 DNA polymerase IVchromosome CDS1425147 1065 + 0.62723
dnaA PFL_0001 chromosomal replication initiator protein DnaAchromosome CDS101 1542 + 0.60441
dnaA PFL_4437 DnaA family proteinchromosome CDS5145826 705 - 0.622695
dnaB PFL_4663 replicative DNA helicasechromosome CDS5382535 1350 + 0.539259
dnaB PFL_0583 replicative DNA helicasechromosome CDS677204 1398 + 0.625894
dnaE PFL_1191 DNA polymerase III, alpha subunitchromosome CDS1362627 3522 + 0.618115
dnaG PFL_5662 DNA primasechromosome CDS6447950 1974 + 0.608409
dnaN PFL_0002 DNA polymerase III, beta subunitchromosome CDS1681 1104 + 0.618659
dnaQ PFL_5703 exonucleasechromosome CDS6501451 708 + 0.662429
dnaQ PFL_3294 DNA polymerase III, epsilon subunitchromosome CDS3802474 750 - 0.650667
dprA PFL_0024 smf proteinchromosome CDS25762 1095 + 0.689498
endA PFL_2097 endonuclease Ichromosome CDS2318180 690 - 0.594203
fis PFL_0667 DNA-binding protein Fischromosome CDS778303 321 - 0.551402
gyrA PFL_4314 DNA gyrase, A subunitchromosome CDS5015182 2670 - 0.611236
gyrB PFL_0004 DNA gyrase, B subunitchromosome CDS3913 2418 + 0.590157
holA PFL_5441 DNA polymerase III, delta subunitchromosome CDS6212235 1038 + 0.649326
holB PFL_1802 DNA polymerase III, delta' subunitchromosome CDS2003938 987 + 0.646403
holC PFL_1065 DNA polymerase III, chi subunitchromosome CDS1215463 429 - 0.629371
hrpA PFL_1531 ATP-dependent helicase HrpAchromosome CDS1716919 3912 + 0.663599
hrpB PFL_5417 ATP-dependent helicase HrpBchromosome CDS6184851 2520 - 0.684921
hupB PFL_3984 DNA-binding protein HU, beta subunitchromosome CDS4601382 273 - 0.52381
hupN PFL_1061 DNA-binding protein HU, nu subunitchromosome CDS1210395 282 + 0.528369
ihfA PFL_2117 integration host factor, alpha subunitchromosome CDS2337568 303 + 0.534653
ligA PFL_1893 DNA ligase, NAD-dependentchromosome CDS2111442 2367 + 0.634136
mfd PFL_1954 transcription-repair coupling factorchromosome CDS2182453 3450 - 0.644058
mutL PFL_0564 DNA mismatch repair protein MutLchromosome CDS656351 1911 + 0.656724
mutM PFL_5870 formamidopyrimidine-DNA glycosylasechromosome CDS6674588 813 - 0.654367
mutS PFL_1209 DNA mismatch repair protein MutSchromosome CDS1383370 2580 - 0.629457
mutY PFL_0358 A/G-specific adenine glycosylasechromosome CDS409444 1068 - 0.670412
nth PFL_4850 endonuclease IIIchromosome CDS5594352 639 + 0.591549
nudE PFL_0297 ADP compounds hydrolase NudEchromosome CDS345444 567 + 0.645503
nudF PFL_3331 ADP-ribose pyrophosphatasechromosome CDS3849174 954 - 0.663522
nudF PFL_0541 ADP-ribose pyrophosphatasechromosome CDS632160 618 + 0.62945
nudH PFL_5900 dinucleoside polyphosphate hydrolasechromosome CDS6711085 480 - 0.591667
ogt PFL_5108 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS5870608 501 - 0.644711
parC PFL_0548 DNA topoisomerase IV, A subunitchromosome CDS638267 2259 + 0.636565
parE PFL_0545 DNA topoisomerase IV, B subunitchromosome CDS634854 1905 + 0.647244
phrB PFL_5147 deoxyribodipyrimidine photolyasechromosome CDS5908560 1446 + 0.658368
polA PFL_0082 DNA polymerase Ichromosome CDS78780 2790 + 0.6319
polB PFL_2480 DNA polymerase IIchromosome CDS2743525 2361 + 0.663702
priA PFL_0440 primosomal protein N'chromosome CDS503900 2220 - 0.688288
radC PFL_6051 DNA repair protein RadCchromosome CDS6873159 675 - 0.641481
recA PFL_1231 recA proteinchromosome CDS1403845 1053 + 0.585945
recB PFL_0741 exodeoxyribonuclease V, beta subunitchromosome CDS862868 3693 + 0.667479
recC PFL_0740 exodeoxyribonuclease V, gamma subunitchromosome CDS859452 3420 + 0.637719
recD PFL_0742 exodeoxyribonuclease V, alpha subunitchromosome CDS866614 2025 + 0.682469
recF PFL_0003 DNA replication and repair protein RecFchromosome CDS2805 1104 + 0.618659
recG PFL_6071 ATP-dependent DNA helicase RecGchromosome CDS6891064 2076 + 0.681118
recJ PFL_1120 single-stranded-DNA-specific exonuclease RecJchromosome CDS1284797 1710 + 0.674269
recN PFL_0825 DNA repair protein RecNchromosome CDS951923 1674 - 0.634409
recO PFL_1073 DNA repair protein RecOchromosome CDS1224669 690 + 0.673913
recQ PFL_1579 ATP-dependent DNA helicase RecQchromosome CDS1776735 2127 + 0.639398
recR PFL_1907 recombination protein RecRchromosome CDS2128400 603 + 0.66335
rep PFL_6031 ATP-dependent DNA helicase Repchromosome CDS6852343 2010 + 0.608955
rnhA PFL_3297 RNase Hchromosome CDS3804857 453 - 0.635762
rnhB PFL_1190 ribonuclease HIIchromosome CDS1361904 654 + 0.637615
rnt PFL_4856 ribonuclease Tchromosome CDS5599902 672 + 0.613095
ruvA PFL_4764 Holliday junction DNA helicase RuvAchromosome CDS5501712 609 - 0.617406
ruvB PFL_4763 Holliday junction DNA helicase RuvBchromosome CDS5500653 1059 - 0.638338
ruvC PFL_4765 crossover junction endodeoxyribonuclease RuvCchromosome CDS5502435 525 - 0.647619
sbcB PFL_4788 exodeoxyribonuclease Ichromosome CDS5527830 1494 - 0.60174
sbcC PFL_2729 nuclease SbcCD, C subunitchromosome CDS3011647 3645 - 0.674074
ssb PFL_5552 single-strand DNA-binding proteinchromosome CDS6341580 510 - 0.627451
tag PFL_0015 DNA-3-methyladenine glycosylase Ichromosome CDS17826 564 + 0.625886
tatD PFL_4286 deoxyribonuclease TatDchromosome CDS4981500 807 + 0.604709
topA PFL_1942 DNA topoisomerase Ichromosome CDS2169429 2613 + 0.613471
topA PFL_4672 DNA topoisomerase Ichromosome CDS5393086 1917 + 0.574335
ung PFL_1435 uracil-DNA glycosylasechromosome CDS1614803 693 + 0.619048
uvrA PFL_3691 UvrABC system, A proteinchromosome CDS4281594 2667 - 0.693288
uvrA PFL_5554 UvrABC system, A proteinchromosome CDS6343672 2835 + 0.63739
uvrB PFL_2046 UvrABC system, B proteinchromosome CDS2272690 2016 + 0.632937
uvrC PFL_3562 UvrABC system, C proteinchromosome CDS4108688 1824 - 0.635417
uvrD PFL_6162 DNA helicase IIchromosome CDS6999297 2184 + 0.643315
xerC PFL_6015 tyrosine recombinase XerCchromosome CDS6834858 897 + 0.668896
xerD PFL_1101 tyrosine recombinase XerDchromosome CDS1256663 897 + 0.656633
xseA PFL_4944 exodeoxyribonuclease VII, large subunitchromosome CDS5697209 1380 + 0.683333
xseB PFL_5508 exodeoxyribonuclease VII, small subunitchromosome CDS6292243 243 + 0.62963
xth PFL_3928 exodeoxyribonuclease IIIchromosome CDS4539285 813 + 0.618696