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2024-04-30 09:35:32

Gene list

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COG category: Replication, recombination and repair
Organism: Pseudomonas syringae pv. syringae B728a, B728a

Number of genes found: 215

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Pseudomonas syringae pv. syringae B728a, B728a
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Psyr_0095 Transposase, IS4chromosome CDS104951 1419 - 0.565891
NA Psyr_2798 hypothetical proteinchromosome CDS3380400 450 - 0.522222
NA Psyr_1492 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS1680090 963 + 0.589823
NA Psyr_4607 Helix-turn-helix, Fis-typechromosome CDS5465113 300 + 0.53
NA Psyr_1464 hypothetical proteinchromosome CDS1652193 1452 - 0.561983
NA Psyr_0651 Helix-turn-helix, Fis-typechromosome CDS739648 300 + 0.53
NA Psyr_0185 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS197894 900 + 0.622222
NA Psyr_0819 TatD-related deoxyribonucleasechromosome CDS924634 795 - 0.644025
NA Psyr_1177 ISPsy9, transposase OrfAchromosome CDS1331164 540 - 0.525926
NA Psyr_1084 Histone-like bacterial DNA-binding proteinchromosome CDS1225706 282 + 0.514184
NA Psyr_3895 Ribonuclease Tchromosome CDS4636903 678 + 0.616519
NA Psyr_2825 DNA methylase N-4/N-6chromosome CDS3399004 1122 + 0.618538
NA Psyr_2761 DNA-directed DNA polymerasechromosome CDS3348722 1281 - 0.5605
NA Psyr_2640 NUDIX hydrolasechromosome CDS3207940 447 + 0.52349
NA Psyr_3647 DNA gyrase, subunit Achromosome CDS4330537 2778 - 0.607991
NA Psyr_3990 conserved hypothetical proteinchromosome CDS4748908 1011 + 0.533136
NA Psyr_0681 Exodeoxyribonuclease V, beta subunitchromosome CDS781010 3693 + 0.637422
NA Psyr_1750 Histone-like bacterial DNA-binding proteinchromosome CDS1989565 273 + 0.542125
NA Psyr_3396 RecR proteinchromosome CDS4053568 603 - 0.650083
NA Psyr_0746 IS66 Orf2 likechromosome CDS848631 366 - 0.601093
NA Psyr_4131 Transposase, IS111A/IS1328/IS1533:Transposase IS116/IS110/IS902chromosome CDS4921241 930 - 0.576344
NA Psyr_3831 ATP-dependent helicase HrpAchromosome CDS4564908 3912 - 0.628834
NA Psyr_0222 DNA repair protein RadCchromosome CDS236452 675 + 0.604444
NA Psyr_2605 transposase, putativechromosome CDS3059276 498 + 0.578313
NA Psyr_0106 Transposase IS3/IS911chromosome CDS117869 300 - 0.57
NA Psyr_1520 SNF2-related:Helicase, C-terminalchromosome CDS1708268 1953 - 0.564772
NA Psyr_1825 DNA-directed DNA polymerasechromosome CDS2105845 2211 + 0.644957
NA Psyr_1473 DNA topoisomerase IIIchromosome CDS1659653 2022 - 0.557863
NA Psyr_2148 Deoxyribonuclease Ichromosome CDS2505150 702 - 0.578348
NA Psyr_3809 hypothetical proteinchromosome CDS4529589 1851 + 0.427337
NA Psyr_1410 Holliday junction DNA helicase RuvBchromosome CDS1596169 1062 + 0.614878
NA Psyr_1975 Integrase, catalytic regionchromosome CDS2292586 807 - 0.532838
NA Psyr_0004 DNA gyrase, B subunitchromosome CDS3809 2418 + 0.565343
NA Psyr_0215 Exodeoxyribonuclease III xthchromosome CDS228597 780 - 0.592308
NA Psyr_4320 ATP-dependent helicase HrpBchromosome CDS5170887 2535 - 0.644181
NA Psyr_1974 Excinuclease ABC, B subunitchromosome CDS2290405 2016 + 0.608135
NA Psyr_1475 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS1663795 963 + 0.586708
NA Psyr_0961 Deoxyribodipyrimidine photolyasechromosome CDS1094638 1449 - 0.610766
NA Psyr_3245 ATP-dependent DNA ligase:ATP-dependent DNA ligasechromosome CDS3886134 2601 - 0.623222
NA Psyr_1433 C-5 cytosine-specific DNA methylasechromosome CDS1621535 1416 - 0.536017
NA Psyr_4608 Integrase, catalytic regionchromosome CDS5465472 783 + 0.551724
NA Psyr_4197 DNA repair protein RecNchromosome CDS4993564 1674 + 0.613501
NA Psyr_0554 Gram negative topoisomerase IV, subunit Achromosome CDS625908 2256 + 0.608156
NA Psyr_3366 DNA-3-methyladenine glycosylase IIchromosome CDS4024950 666 - 0.627628
NA Psyr_4354 DNA-directed DNA polymerasechromosome CDS5208672 1038 + 0.636802
NA Psyr_1378 RecA bacterial DNA recombination proteinchromosome CDS1562480 1065 + 0.585916
NA Psyr_3949 Recombination protein O, RecOchromosome CDS4697047 684 - 0.638889
NA Psyr_4843 NUDIX hydrolasechromosome CDS5750022 480 - 0.5625
NA Psyr_0458 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminalchromosome CDS494944 1890 - 0.643386
NA Psyr_0593 ISPsy9, transposase OrfAchromosome CDS681393 540 - 0.525926
NA Psyr_0516 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS572766 1422 - 0.614627
NA Psyr_4114 Protein of unknown function UPF0102chromosome CDS4905592 372 + 0.577957
NA Psyr_4019 transcriptional regulator, putativechromosome CDS4786693 381 + 0.548556
NA Psyr_3316 ISPsy8, transposase OrfAchromosome CDS3968246 516 + 0.534884
NA Psyr_0400 Staphylococcus nuclease (SNase-like)chromosome CDS428135 804 + 0.649254
NA Psyr_1714 exonuclease SbcCchromosome CDS1939647 3645 - 0.624966
NA Psyr_3888 Endonuclease III/Nthchromosome CDS4629580 639 + 0.555556
NA Psyr_0535 toluene tolerance protein, putativechromosome CDS604151 756 - 0.595238
NA Psyr_0883 S-type Pyocinchromosome CDS1005013 2037 - 0.531173
NA Psyr_4754 Conserved hypothetical protein 95chromosome CDS5631047 591 + 0.663283
NA Psyr_2666 NUDIX hydrolasechromosome CDS3236226 528 - 0.517045
NA Psyr_0002 DNA polymerase III, beta chainchromosome CDS1575 1104 + 0.576993
NA Psyr_4948 ATP-dependent DNA helicase RecQchromosome CDS5864093 1950 - 0.602564
NA Psyr_1819 NAD-dependent DNA ligasechromosome CDS2097011 2364 + 0.625634
NA Psyr_2817 hypothetical proteinchromosome CDS3392815 468 + 0.544872
NA Psyr_2832 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS3406247 1035 + 0.569082
NA Psyr_0525 Lipopolysaccharide kinasechromosome CDS587157 780 + 0.60641
NA Psyr_0096 Transposase, IS4chromosome CDS106580 984 - 0.557927
NA Psyr_1409 DNA recombination protein, RuvAchromosome CDS1595560 609 + 0.599343
NA Psyr_0523 Lipopolysaccharide kinasechromosome CDS585620 807 + 0.615861
NA Psyr_2382 conservedhypothetical proteinchromosome CDS2761385 432 + 0.541667
NA Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS4303040 1674 - 0.622461
NA Psyr_2985 2OG-Fe(II) oxygenase superfamilychromosome CDS3576049 687 + 0.627365
NA Psyr_0585 DnaB helicasechromosome CDS665791 1395 + 0.6
NA Psyr_1090 DNA polymerase III chi subunit, HolCchromosome CDS1232170 429 - 0.617716
NA Psyr_4297 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS5123836 1329 - 0.62152
NA Psyr_1408 Crossover junction endodeoxyribonuclease RuvCchromosome CDS1594950 525 + 0.609524
NA Psyr_0570 DNA mismatch repair proteinchromosome CDS647607 1947 + 0.631741
NA Psyr_4796 DNA ligase (NAD+)chromosome CDS5685673 1686 + 0.623962
NA Psyr_1896 Transcription-repair coupling factorchromosome CDS2166974 3453 - 0.621778
NA Psyr_3177 AAA ATPase, central regionchromosome CDS3803963 1323 - 0.608466
NA Psyr_4370 methylpurine-DNA glycosylase family proteinchromosome CDS5223636 672 + 0.625
NA Psyr_0003 RecF proteinchromosome CDS2701 1104 + 0.570652
NA Psyr_2914 ATP-dependent DNA helicase RecQchromosome CDS3497794 4422 - 0.545455
NA Psyr_0592 Integrase, catalytic regionchromosome CDS680557 837 - 0.506571
NA Psyr_1976 ISPsy8, transposase OrfAchromosome CDS2293422 516 - 0.52907
NA Psyr_1286 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS1451032 897 + 0.622074
NA Psyr_4077 Methylated-DNA-[protein]-cysteineS-methyltransfe rasechromosome CDS4860519 357 + 0.630252
NA Psyr_2060 TatD-related deoxyribonucleasechromosome CDS2406820 822 - 0.615572
NA Psyr_2751 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS3339505 966 - 0.604555
NA Psyr_0551 Gram negative topoisomerase IV, subunit Bchromosome CDS622501 1905 + 0.621522
NA Psyr_3686 DnaA family proteinchromosome CDS4372196 786 - 0.601781
NA Psyr_3970 Uracil-DNA glycosylasechromosome CDS4718010 693 - 0.588745
NA Psyr_0105 Integrase, catalytic regionchromosome CDS116991 822 - 0.56691
NA Psyr_4761 Formamidopyrimidine-DNA glycolasechromosome CDS5636162 813 - 0.632226
NA Psyr_1588 Putative exonuclease, RdgCchromosome CDS1787124 921 - 0.605863
NA Psyr_4020 Exodeoxyribonuclease Ichromosome CDS4787147 1431 - 0.579315
NA Psyr_1452 conserved hypothetical proteinchromosome CDS1638691 1464 - 0.547131
NA Psyr_3804 ATP-dependent DNA helicase RecQchromosome CDS4522205 2097 + 0.528851
NA Psyr_0201 ATP-dependent DNA helicase RecGchromosome CDS215460 2076 - 0.637283
NA Psyr_4680 Integrase, catalytic regionchromosome CDS5547340 837 + 0.506571
NA Psyr_4860 Integrase, catalytic regionchromosome CDS5767943 807 + 0.539033
NA Psyr_1531 DnaB helicasechromosome CDS1720372 1347 - 0.541203
NA Psyr_4421 Protein of unknown function DUF1568chromosome CDS5286657 459 - 0.501089
NA Psyr_2521 conserved hypothetical proteinchromosome CDS2929599 624 + 0.677885
NA Psyr_1358 DNA polymerase III alpha subunitchromosome CDS1538020 3522 + 0.599659
NA Psyr_3027 Protein kinase:Leucine-rich repeatchromosome CDS3624696 1305 + 0.63295
NA Psyr_2976 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS3568468 960 - 0.620833
NA Psyr_4903 hypothetical proteinchromosome CDS5816911 1122 + 0.502674
NA Psyr_4616 Integrase, catalytic regionchromosome CDS5474547 837 - 0.506571
NA Psyr_5065 UvrD/REP helicasechromosome CDS6008585 2184 + 0.614927
NA Psyr_1764 DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunitchromosome CDS2005215 780 + 0.588462
NA Psyr_2843 C-5 cytosine-specific DNA methylasechromosome CDS3415442 2133 + 0.627754
NA Psyr_3918 NUDIX hydrolasechromosome CDS4661497 411 - 0.63747
NA Psyr_2909 DEAD_2chromosome CDS3489280 2328 - 0.621134
NA Psyr_3810 Integrase, catalytic regionchromosome CDS4531582 822 - 0.56691
NA Psyr_0652 Integrase, catalytic regionchromosome CDS740007 783 + 0.551724
NA Psyr_1421 Phage integrasechromosome CDS1607964 1407 - 0.556503
NA Psyr_2896 Excinuclease ABC, C subunitchromosome CDS3474485 1824 - 0.614035
NA Psyr_0274 ISPsy9, transposase OrfAchromosome CDS292735 540 - 0.525926
NA Psyr_2828 C-5 cytosine-specific DNA methylasechromosome CDS3401768 2055 + 0.62871
NA Psyr_0736 umuC proteinchromosome CDS840908 246 + 0.51626
NA Psyr_0524 Lipopolysaccharide kinasechromosome CDS586426 735 + 0.587755
NA Psyr_4379 NUDIX hydrolasechromosome CDS5235551 546 + 0.611722
NA Psyr_2759 Eukaryotic-like DNA topoisomerase Ichromosome CDS3346803 1071 + 0.602241
NA Psyr_1533 hypothetical proteinchromosome CDS1722416 756 - 0.541005
NA Psyr_3287 DNA topoisomerase Ichromosome CDS3932531 2613 - 0.603138
NA Psyr_0484 Conserved hypothetical protein 250chromosome CDS522103 441 - 0.614512
NA Psyr_4374 conserved hypothetical proteinchromosome CDS5230568 456 - 0.554825
NA Psyr_2476 AP endonuclease, family 1:Exodeoxyribonuclease III xthchromosome CDS2870547 813 - 0.575646
NA Psyr_0021 SMF proteinchromosome CDS24821 1119 + 0.641644
NA Psyr_3641 Integration host factor, beta subunitchromosome CDS4323375 297 - 0.56229
NA Psyr_3365 Methylated-DNA-[protein]-cysteineS-methyltransfe rasechromosome CDS4023774 1155 - 0.615584
NA Psyr_1273 NUDIX hydrolasechromosome CDS1438999 597 + 0.603015
NA Psyr_0001 chromosomal replication initiator protein, DnaAchromosome CDS1 1536 + 0.58138
NA Psyr_4679 ISPsy9, transposase OrfAchromosome CDS5546801 540 + 0.525926
NA Psyr_0682 Exodeoxyribonuclease V, alpha subunitchromosome CDS784699 2094 + 0.643266
NA Psyr_0289 Radical SAMchromosome CDS307483 1059 - 0.611898
NA Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunitchromosome CDS4577266 2847 + 0.623815
NA Psyr_3635 Competence protein ComEA helix-hairpin-helix regionchromosome CDS4316446 363 - 0.561983
NA Psyr_3712 conserved hypothetical proteinchromosome CDS4398981 534 - 0.526217
NA Psyr_2654 Integrase, catalytic regionchromosome CDS3224856 807 + 0.539033
NA Psyr_0273 Integrase, catalytic regionchromosome CDS291899 837 - 0.506571
NA Psyr_1934 conserved hypothetical proteinchromosome CDS2207057 636 + 0.444969
NA Psyr_4640 DNA primasechromosome CDS5500196 1956 + 0.596626
NA Psyr_5027 Histone-like bacterial DNA-binding proteinchromosome CDS5967367 276 - 0.543478
NA Psyr_4518 Single-strand binding proteinchromosome CDS5382540 552 - 0.576087
NA Psyr_1885 hypothetical proteinchromosome CDS2155794 159 + 0.528302
NA Psyr_2653 ISPsy8, transposase OrfAchromosome CDS3224311 516 + 0.534884
NA Psyr_2244 DNA topoisomerase IIIchromosome CDS2608140 1971 - 0.639269
NA Psyr_1298 RecJ exonucleasechromosome CDS1465993 1716 + 0.628788
NA Psyr_2453 NUDIX hydrolasechromosome CDS2841626 837 + 0.617682
NA Psyr_3189 NUDIX hydrolasechromosome CDS3819057 447 + 0.608501
NA Psyr_1522 Single-strand binding proteinchromosome CDS1712925 465 - 0.526882
NA Psyr_3317 Integrase, catalytic regionchromosome CDS3968791 807 + 0.539033
NA Psyr_0778 NUDIX hydrolasechromosome CDS883365 2109 + 0.536747
NA Psyr_0075 ATP-dependent DNA helicase RepAchromosome CDS79502 2010 + 0.605473
NA Psyr_2168 Integration host factor, alpha subunitchromosome CDS2522380 303 + 0.541254
NA Psyr_4707 Protein of unknown function DUF1568chromosome CDS5577665 459 - 0.529412
NA Psyr_4703 Exonucleasechromosome CDS5573947 714 + 0.612045
NA Psyr_4646 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS5509622 954 + 0.597484
NA Psyr_0013 DNA-3-methyladenine glycosylase Ichromosome CDS14995 552 + 0.601449
NA Psyr_0751 ISPs1, transposase OrfBchromosome CDS854901 306 + 0.535948
NA Psyr_0270 DNA polymerase Achromosome CDS287690 2766 - 0.618944
NA Psyr_3704 conserved hypothetical proteinchromosome CDS4391047 672 + 0.595238
NA Psyr_2522 conserved hypothetical proteinchromosome CDS2930230 1431 + 0.660377
NA Psyr_3805 unnamed protein product; similar to a putative DNA processing proteinchromosome CDS4524298 1368 + 0.526316
NA Psyr_0606 Exonuclease VII, small subunitchromosome CDS696563 246 - 0.617886
NA Psyr_2668 Helix-turn-helix, Fis-typechromosome CDS3239928 615 + 0.606504
NA Psyr_3873 ATP-dependent DNA ligase:ATP-dependent DNA ligasechromosome CDS4613364 1704 + 0.633216
NA Psyr_1480 conserved hypothetical proteinchromosome CDS1669524 603 - 0.515755
NA Psyr_3856 Helicase c2chromosome CDS4595497 2145 - 0.638695
NA Psyr_3811 Transposase IS3/IS911chromosome CDS4532460 300 - 0.57
NA Psyr_1894 SNF2-related:Helicase, C-terminal:SWIM Zn-fingerchromosome CDS2163618 2745 - 0.616758
NA Psyr_2523 DNA polymerase III alpha subunitchromosome CDS2931657 3096 + 0.63146
NA Psyr_3738 ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQchromosome CDS4452018 2130 - 0.62723
NA Psyr_1653 DNA polymerase III delta prime subunitchromosome CDS1857645 987 + 0.616008
NA Psyr_0341 hypothetical proteinchromosome CDS363882 234 + 0.576923
NA Psyr_1259 Exonuclease VII, large subunitchromosome CDS1415962 1392 - 0.647988
NA Psyr_0398 Primosomal protein nchromosome CDS425511 2220 - 0.653153
NA Psyr_1463 DEAD/DEAH box helicasechromosome CDS1649828 2259 - 0.573705
NA Psyr_0680 Exodeoxyribonuclease V, RecC subunitchromosome CDS777540 3474 + 0.610248
NA Psyr_0988 Integrase, catalytic regionchromosome CDS1118184 783 + 0.551724
NA Psyr_2846 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS3419554 1035 + 0.560386
NA Psyr_4941 NUDIX hydrolasechromosome CDS5857194 567 - 0.631393
NA Psyr_1508 Phage integrase:Phage integrase, N-terminal SAM-likechromosome CDS1694121 960 + 0.614583
NA Psyr_0547 Conserved hypothetical protein 52chromosome CDS619676 648 + 0.567901
NA Psyr_1376 MutS 1 proteinchromosome CDS1558832 2580 - 0.617442
NA Psyr_0987 Helix-turn-helix, Fis-typechromosome CDS1117825 300 + 0.53
NA Psyr_4520 Excinuclease ABC, A subunitchromosome CDS5384574 2886 + 0.60499
NA Psyr_4405 Helix-turn-helix, Fis-typechromosome CDS5267317 321 + 0.551402
NA Psyr_1715 Exonuclease SbcDchromosome CDS1943288 1245 - 0.646586
NA Psyr_1176 Integrase, catalytic regionchromosome CDS1330328 837 - 0.506571
NA Psyr_4617 ISPsy9, transposase OrfAchromosome CDS5475383 540 - 0.525926
NA Psyr_1397 DNA-directed DNA polymerasechromosome CDS1582602 1065 + 0.605634
NA Psyr_1070 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS1212230 1458 - 0.613169
NA Psyr_2361 DNA polymerase B, exonuclease:DNA polymerase B regionchromosome CDS2737422 2364 + 0.608714
NA Psyr_4859 ISPsy8, transposase OrfAchromosome CDS5767398 516 + 0.531008
NA Psyr_0683 NUDIX hydrolasechromosome CDS786913 405 + 0.54321
NA Psyr_2511 UvrD/REP helicasechromosome CDS2919741 2394 + 0.600668
NA Psyr_4901 A/G-specific adenine glycosylase MutYchromosome CDS5814937 1068 + 0.639513
NA Psyr_1226 hypothetical proteinchromosome CDS1384596 354 - 0.612994
NA Psyr_4300 DNA polymerase III, epsilon subunitchromosome CDS5126781 615 - 0.626016
NA Psyr_1080 Excinuclease ABC, C subunit, N-terminalchromosome CDS1222555 342 + 0.614035
NA Psyr_2101 Protein kinasechromosome CDS2450832 1662 - 0.640193
NA Psyr_1057 alginate biosynthesis protein AlgXchromosome CDS1195942 1440 - 0.586111
NA Psyr_1425 DNA-directed DNA polymerasechromosome CDS1612927 1281 + 0.556596
NA Psyr_0526 conserved hypothetical proteinchromosome CDS587936 1446 + 0.621715
NA Psyr_1212 type III secretion protein HrpOchromosome CDS1368608 447 - 0.592841
NA Psyr_1763 RNase Hchromosome CDS2004697 453 + 0.611479
NA Psyr_2667 Transposase Tn3chromosome CDS3236917 2886 - 0.619543
NA Psyr_1655 TatD-related deoxyribonucleasechromosome CDS1859037 786 + 0.625954
NA Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS4506809 1338 - 0.622571
NA Psyr_2430 NUDIX hydrolasechromosome CDS2812267 399 - 0.588972
NA Psyr_1357 Ribonuclease Hchromosome CDS1537295 657 + 0.604262