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# Haemophilus influenzae 86-028NP, 86-028NP

>NTHI1887 predicted capsid scaffolding protein
MAKKSKWVVVATEGATTDGRTIQRNWISEMAANYDPKKYGARVNLEHIKW
RYMWNDDPHSKCYGDVIGLKTEENAEGKLQLLAQIDPTDDLIKLNKDRQK
IYTSIECDPNFADTGEAYLVGLAVTDNPASLGTEMLVFSAGASANPLNNR
KEKADNIFTAAVETELEFVEETQSIFEKIKGLFAKKEKSDDERFSDQTQA
IELLAEQTKETLEKLTALSDDLAKQKAEIEEMKASNAEIQATFAELQKPV
EPENPRPLVYGEQPETDGRFF
>NTHI1487 modification methylase Bsp6I-like
MFTYGSICSGIEAVSVAWKGLSKPLWFSEIEPFPCAVLAYHYPNIPNLGD
MTTLPEKILNREIPAPDVLVGGTPCQAFSVAGLRNSLDDERGNLTLTLIH
ILEAIDYVRYQDGKQPCVLLWENVPGVLSTKDNAFGHLLAGLVQEREPLQ
PTGAKWSNAGYVHSSRTIAWRILDAQYFGLAQRRKRVFLVASARERSVAQ
ILFERKSLQGYSQSCGKTQQGFTCYAEGSFGTYRQSVLGGLVKASGGALG
GGSETIVVHGTQDPIISTSTAHCLGRNNGQENVLFDISDRRDVVRIQKDG
TTPTLTARMGTGGNNIPCMSINQNIRKLTPSECEKLQGFPPGYTQISYRN
KPAEDCPDSPRYKAIGNSMAVPVIKWIGERMINYLNK
>NTHI0581 putative deoxyribonuclease
MFIVDSHCHLDALDYENLHKNISDVVEKARARDVKHLLAIGVTLSRFEQA
YDSLREFNNVSLACGVHPLDFEEEPYDAERLLRLSQDPKVIAIGEIGLDY
YYSADNKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLREHHAEK
CGGVIHCFTETMEFAKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMDR
LLVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVSAEAFAQITTQN
FERLFKIRVE
>NTHI1460 modification methylase BepI-like
MKLISLFSGCGGMDIGFEGSFSCLKKSINEELHPEWISSTENEWVTVSPT
SFETIFANDIKPDAKAAWVSYFLDQKANANEIYHLESIVDLVKKERETHN
IFPKDIDILTGGFPCQDFSVAGKRLGFDSHKNHHGKISNIDEPSIENRGQ
LYMWMREVISITQPKLFIAENVKGLTNLKDVKEIIEHDFGQASDEGYLVV
PAQVLNAQFYGVPQSRERVIFFGFKKNALNKKALEELQKENIAEDYNPYP
PPTHGKENLKAVVTCTDAFINLQEPNFSKDPSQQKYSKAKYMGNHCQGQV
EIKLNSVGPTIRSEHHGNIEYRRLSIEHGGKYINELSKGMLERRLTIREC
ARLQTFPDRYQFILPKTAENVSVSASNAYKIIGNAVPCVLAYNIAKNIEK
KWNLYFK
>NTHI1499 hypothetical protein
MATIIVKRDAGSRKFTEKGEILQRGKAGRLERMFDKQRRINAAFEKMVVK
ESAADRAIKFAANRQKEQFIDIANYHCCKGKPAGTNTVHAVQKRRLGVRE
LIR
>NTHI0158 resolvase/integrase-like protein
MALIGFARVSTQQQDLSEQIQVLKEYGCKKIFSGKHSGKAEKNKAQLDEL
LDYVREGDVVAVTKLDRLGRSLAQCLNTLELFKNKNIGFVAIQQGIDTRT
QNNPMGMALIQLLGIFAELERSFIVERTQEGKRTKLASGHKNALGGRPPK
VTDKIRKKIYADFKAGDSISTVMKRYDLSKSTVARLKGIYNRENLMSEE
>NTHI1523 predicted DNA modification methylase
MPPYADLEVYSNNPNDLSNMDYDNFKKAYFEIIKKSCDMLKDNRFACFVV
GEVRDKKGNYYNFVGDTIQAFLEAGLSYYNEMILVNVCGTMPMRAATPFK
GSRKIGKVHQNVLVFVKGNPKIAAEYCGDVDVYIPNEDN
>NTHI0419 prophage CP4-57-like integrase
MAKKVKPLVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRP
ITKKRAKISLGLYPAITLSKARELREQYRQLLANKIDPQEYIKQHELLQL
QRQNNTFFAISTQWKQKKVSEIKSVTLKSRWRTLEKYAFPYLGDNPIAEI
TPQQLHDTVIPLFERGVSHTGKLVIALVNEIMNFAVNKGIIEFNKCINVS
KAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIEFSLLTITRPS
EAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG
RSRFIFQSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSET
FTEMNLEILEACLSHQSKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMK
KSI
>NTHI1183 conserved hypothetical protein
MKLMKTLFTSFVLCGSLAAGSTFAEDKVVEQTTQAVVTTQTDSQVAPAMM
GDKLNINIATASEIQKSLTGIGAKKAEAIVQYREKHGNFTNVEQLLEVQG
IGKATLEKNRDRIIF
>NTHI1495 modification methylase DpnIIB-like
MKTELFNDHFQNYKRYHIPKAQLVIADIPYNLGNNAYASNPEWYVNGDNK
NGESDKANSSFFDTDKDFRIAEFMHFCSKMLIKEPKERGKAPCMIVFCAF
QQISMVIDYAKQHGFKNHIPLVFIKSSSPQVLKANMKVVGATEYALILYR
DKLPKFNNNGKMIKNWFEWEKDNRKEIPKLHPTQKPIAVLKRLIEIFTDE
GDVVIDPVAGSASTLRAARELNRPSYGFEIKKDSCKIAKEKMLNI
>NTHI0683 conserved hypothetical protein
MTTKYNAGIHHRSSIRLKHYNYRSEGFYFITICCKNKECLFGHIINQQMQ
LNDLGNYVKQCWENIPMFFPQVRIDEFVIMPNHLHGIIEIIEQVKGKCNL
PLQSRVTQLPQKGTSQTIGSIVRGFKAGVTSWARKNSEIFDVWQRNYYEH
IIRDEKSYLQIYEYIQNNPILWEQDQLYVD
>NTHI1650 conserved hypothetical protein
MMANDDFQEYVKQLVTKHRDERIYPFQYEGKKYWLKQPEKLKGIWLLLKP
HPKKSFKNELHTLLKLAEQNAPVPKVSYYSDHFFVLENVGLTVSQWLCNK
NIDEQQKFLIIYDACLALIDLHAKNLIHGRPAIRDITWDKGKVTFLDFES
RANSQNQNWVVIRDMLFFFDSLCREEDISDDFIQKVALYYQAYCRVENWQ
NMIVFLQRFRWVYYLLLPFKPFAKKDLIAVYRLFEILLIKKK
>NTHI1447 hypothetical protein
MHHKITNTHKKTTCIKPHTESAKKHAMIYVEDLQVENMSKSAKGTAEKHG
KNVK
>NTHI1492 predicted recombinational DNA repair protein, RecE pathway
MTNQVQHQQNKQPPALKTFFESANVQNKIKELVGKNAATFATSVMQIANS
NAMLKTADPMSIFNAACMAATLNLPLQNGLGFAYIVPFRNNKEKKTEAQF
QIGYKGFIQLAQRSGQFKRLVALPVYKKQLIKKDFINGFEFDWEQEPEQN
ENPIGYYAYFKLVNDFSAELYMSHDDIVKHAQRYSQTFKKGYGVWHDNFE
AMALKTVTKLLLSKQAPLSVEMQQAVLADQAVVKDVENQEFNYTDNIQEA
EFLAVVDEATFEQCKQSIANGETTLQELCDSGAYEFSQEQIAELEAIENG
NVPTQS
>NTHI1480 prophage CP4-57-like integrase
MGGRMAVLVKPLSITEINNAKPKEKDYSLSDGQGLFLLVKMNGSKIWRFQ
YYKPISKKRTLISLGVYPEISLKDAREIRDLYRSLLAKNIDPQDYRLQQE
QKAIQERQFTLSEMGKEWLYLKKNEVDTGRLKEVTFIDIGKRLERHLFKV
LGHYSISEISAPLAIEKLKPLERAGKLDTLHRIIGYLNQIMIYSVNRGVI
NYNATADIGRVFIRPIAENNPTIRPEQLPKLFEDLQNSTLEIETRCALEL
LLLTAGRAGAITQLEWENVDFENSLLNIPKEKMKGRQGKVQDFILPLSKQ
AVTILRLLQKLNRCNSKFVFPSKKNPRQPISKETPNKALGRIGYRNILTA
HGLRSVFSTAMNEAEFNSEIIEVCLAHFEYSSVRGTYNKAKYMPQRIEYM
QWWGNFVEEASDGKALMGC
>NTHI0201_1 conserved hypothetical protein
MIKARYFYLYKLIVRCRFFIAKYNTLFKQQVIEFYIQNGKNYSLISKHFQ
LDSRTLRHWINQFNHSRINWLAVLGKKRNYSLKFKLNVIQTVKNGQFL
>NTHI0322 predicted uracil-DNA glycosylase
MIFHIFQIDFIYSFLISFIMLKNLDEITSSIIADPQNKDFTERGIFPLFS
APKTARINIVGQAPGLKAEQSRLYWNDKSGDRLREWLGVDYDYFYNSGIF
AVLPMDFYYPGKGKSGDLPPRQGFAERWHPMILGNLPNIQLTILIGQYAQ
KYYLPENKDNVTNTVKNYRQFLPHFMPLVHPSPRNQLWATKNPWFEEQVI
PELQILVKQIINKD
>NTHI1711 putative integrase/recombinase
MNEITPTKRGEKHEFNRLNRFLRHPVTDKYISDVSRIGDEELCFDIKSSV
LDATFRKLKKLAEREYLHFHDTRREALTRLSKKVDVMTLAKISGHKDISI
LQNVYYAPDMAEVAELLD
>NTHI1458 predicted ATPase related to the helicase subunit of the holliday junction resolvase
MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHI
HSMILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQ
NRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELN
NALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVL
AEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVLGERQARFDKQ
GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE
DVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYT
AFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSTVKKRYK
>NTHI0156 conserved hypothetical protein
MGIKNKPITRPCPQCGRNYQYRRASGRTFELCEYCRNLDCVVCGKKVPPE
RGRKNTCCAECEKLKIHNIQNAHYAKRIAEDPELNKRNHAKARENRKADP
ERMHEHLEAQRERHYRRVQDPNYLATRKVYQAQRWQDKKDEILAQRREFW
DSLSDVEKAERLERNQAIQRKHKAKKRDQLKLDPQKWAEYQEYQRTKRRE
HRQRKALNELMVGTKELLNVTNKDK
>NTHI1828 predicted micrococcal nuclease-like protein
MINRKILLASLLLIFTVLSACSREKNTCRVVKISDGDTLTCLTKGNKSIK
VRLAEIDAPEKSQAFGQKSKKTLSDLVYQKNVRLSLKGKDRYQRTFAIVY
YQDKNINLEMVKQGMAWAYKQYSHDPIYLQAQENAQAKGIGLWADNNPIE
PSQWRRQEKN
>NTHI1958 predicted endonuclease distantly related to archaeal holliday junction resolvase
MFSLKRQQGASFEHQARLFLESKGLTFIAANQNFKCGELDLIMNDKETIV
FVEVRQRSHSAYGSAIESVDWRKQQKWLDAANLWLAKQNMSLEDANCRFD
LIAFGKTPQDIQWIPNFLD
>NTHI0778 Zn-finger domain associated with topoisomerase type I
MNQSLFHHSKQQEYCPQCGALLQIKQGKKGLFLGCSAYPECDYLRPLQRS
EHKVLKTFDEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEE
KITCPECKTGHLISRRGRQGKIFYGCDNFPKCKFSLPAKPYSVPCPTCHF
PLSLLKSENGEKQIFQCANKTCRHIFEQ
>NTHI0095 putative deoxyribonuclease
MHFFDTHTHLDYLQQFTGEPLSQLIDNAKQADVQKILVVAVKEADFKTIQ
NMTALFPDNLCYGLGLHPLYIQEHAENDLILLEQALKNRDANCTAVAEIG
LERAIPDLLTDELWAKQCHFFESQLYLAKQFNLPVNIHSRKTHDQIFTFL
KRIPLSKLGVVHGFSGSYDQAKRFVDLGYKIGVGGTITYERANKTRQAIA
KLPLDALVLETDSPDMPVFGFQGQPNRPERIVESFKALCTLRNEPAELIK
KLTWKNACQIFS
>NTHI1740 conserved hypothetical protein
MSDVKGKSTSGRGLTPKQEKFCQLYIELGNASEAYRQSYDCQDMKSESIN
RLAKKELDKIKIRSRVDVLQQEHRQRHNLTLDNIIADLQEYRDICMGRKP
LTITTVVKNAQEGTAQSVNTECFVFEPTGANKALELLGKHLGMFTNKVDV
TTDGKPLPTVINVTFSDEPA
>NTHI0928 predicted N6-adenine-specific methylase
MKKIQTPNAKGEVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMP
YIYQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK
CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCEN
NWLKPNALIYVETEKDKPLITPENWTLLKEKTTGMVSYRLYQN
>NTHI1509 hypothetical protein
MACSVDDIKKAHGKRTEGRLKIQMIKLQGGVLAPLDELESEELKSLKNGE
QYEIEIIRTRNPAFHRKVFAFFKFCFNHWAADKTEWEHFDERKQFDTFRK
HLTVLAGFYESTYNIKGDLRIEAQSLSYGNMEQAEFESCYKALISAAIKH
IFNDTTDENTLNQLYAFFG
>NTHI1522 hypothetical protein
MMNKDLNIEYISTDVLKPYVNNSRTHSDEQIDQICESIEEFGFTNPILIG
ENNGIIAGHGRLLAAIKLNLYTVPTIRLTGLSDIQKKAYVIADNSLALNA
GWNFELLSLELNELKDLGFDIDLLGFDDDFLKSLDGDLLADISGDSNSKE
KLDLKQAFLAPPFSILNSREGWWQDRKRKWKALGIDSGSGRDSGMQRGMN
SMARYNSKEDTSMSESDDSIFDPVLCEILYSWFSPKGCQILDPFAGGSVR
GIVASKLNRNYIGVDLRAEQIEANLKQRNLVCSNDELQPIWICGDSINID
KLANGVSADLVFSCPLMPI
>NTHI0444 predicted primosomal replication protein N
MTVQQLIQRLDQKVQQLYQAHLSKREEKIFAKFDRTLFSENGQNVSFYLK
EINQTLDRIKTLESNDSNHYNFLAERLLAQCSVLSEALVRKNTHLTESQT
TTKQTIQKSQHSIHKLPPRERLEKYYEAREQLNNLYRQHKDLAQAEKNND
EKIRYAQLAEVYKKRQQKCQDAIDLLEEYLVFKEEVENRENTENK
>NTHI1653 conserved hypothetical transposase-like protein
MKCKVYTVVVPNVQSATLLPIIRKKVKPDSIVYTDTFRSYDMLDVSEFSH
FRINHSTHFAENHNYINGIGNFWNHAKRHLQKFNGIPKEHFELYLKECEW
RFNNSEIKSQISILKQLVKGSLV
>NTHI0693 conserved hypothetical transposase-like protein
MLVQEMLLQAVKKLQRNANLILHSDQGIHYQMLSYQRLLAKNRISQSMSR
KGNCLDNAAMESFFGRLKTECFYGREFNSREEIVDAVRDYLDYYNHRRIQ
LKLKGLSPIQYRKQSFK
>NTHI1445 hypothetical protein
MMPWIETDAMQQRVLFLKAWLSQRYTKTELCQQFNISRPTADKWIKRHQQ
LGFEG
>NTHI1942 predicted ATPase involved in DNA replication initiation
MNKQLPLPIHQINDATLENFYGDNNLLLLDSLRKNSSDLKQPFFYIWGDK
GSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD
DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNS
RLTWGEIYQLNSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMH
TLFEALDLLDKASLQAQRNLTIPFVKEILNL
>NTHI0164 putative site-specific recombinase
MKSYEKAIRQLQKNCSIQYPDEISDSLILQWRKRVVGQSIIEVTWNSYIR
QLKTIFKFGIEKQLLPFTKNPFDGLFIREGKKKRKVYTSSDLKKLSFGIT
ESKHLPSILRPLWFTKTIIMTFRYTAIRRSQLNKLRIKDVDLLNQVIHIP
SEINKNHEYHILPISTTLYPYLKKLLTELSKLNQPVESQLFNINLFSNAV
KRKGEKMTNDQVSYIFKVISKYTGIISSPHRFRHTAATNLMKKPENLYIA
KQLLGHKDVKVTLSYIEDNIDSIREYTELL
>NTHI1966 conserved putative deoxyribonuclease
MLFDSHLHLDQLSDENIQQTLAHSKIIGMLAVSTNLNSAKKLLNLKQTYP
KKLYIAAGFHPEQQLPSLEEQKELFQWIDEHYSSISAIGEVGLPHYSKRE
NPNLDYVPYIELLERFILIAKKWDLPLNLHIVHNDVEIALELLQKHKIQR
AHFHWFKTDEKSFQKFFSTPYFASLTPDILWNHKTQYVAQHLPLNRLMIE
TDSPWQHEGFERAGISEQLLAVLQKLAELKSLPLHSVQKQMLLNTQQFYQ
L
>NTHI0519 adpP, ADP-ribose pyrophosphatase
MQFWRKQMSEIQHFSQQDIEILGEQTLYEGFFTLKRIQFKHKLFAGGQSG
VVTRELLIKGAASAVIAYDPKEDSVILVEQVRIGAAYHPESNRSPWLLEL
IAGMVEKGEKPEEVALRESEEEAGIQVKNLTHCLSVWDSPGGIVERIHLF
AGEVDSTQAKGIHGLAEENEDIKVHVVKREQAYQWMCEGKIDNGIAVIGL
QWLQLNYAQLQQSWKRS
>NTHI0564 comB, competence protein B
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQ
AQQTSFEQLNQQLHKTTMQIDQLRSAVKVGEVLTSIPNEQVKKSLQQLSE
LPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQ
PEQDTLFFHFDVEQGAEK
>NTHI0307 dam, DNA adenine methylase
MLRPKKQSLKPKLKHRPFLKWAGGKFRLTDEINKAFPNKKNCLIEPFVGA
GAIFLNSNFERYILADINPDLINLFNIVKENVEGYIEDCKPIFFADDANT
PDYYYAKRRQFNASTDPFERSIIFLYLNRFGFNGLCRYNSKNEFNVPFGA
YKTHYFPEDELRYFAHKAQSAVFLCCDFQKTFEFADKDSVIYCDPPYAPL
QQETNFTGYAGNEFGLVQQRALADLAKSIQKEKQISILISNHDTKFTREI
YNGAKFKRVKVQRSISQNPEKRVKVKELIAIFGARK
>NTHI0337 deaD, Cold-shock DEAD-box protein A homolog
MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQ
TGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACEQFVKYA
HGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPGRILDHIRRRTLNLSELR
FIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRF
MNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIF
ARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEP
RERRLLRNIEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLE
QYRSLLEDLFTADQDQEDIAAAMLMLLQGKQKLILPPDPPMEKRRRERND
RGDRRENPRSAERRGERKGYGNPQPMDLYRIEVGRADGVEVRHIVGAIAN
EGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTRVLNKQMQMSFL
GAVKSDNSRGSDDFNGKRKGRGGDFRGERGRERGNDNRGNRKFNEKSNRT
FSDKPRRDRRSSF
>NTHI0507 dinG, probable ATP-dependent helicase
MDYENQIANIFSLNGELSQNIKGFRPRAEQLEMAHAVGKAIQNKSSLVIE
AGTGTGKTFAYLAPALVFGKKTIISTGSKNLQDQLFNRDLPAIKKALNFT
GKIALLKGRANYLCLERLDQVIAQGVLGDKSVLAELSKVRKWNNSTKTGD
FTECIELAEDSPIIPQLTSTAESCLGTDCPNYSECYVASARKKALNADLV
VVNHHLFFADMAVKESGFGELIPNAEVIIFDEAHQLPDIASQYFGQSLTS
RQLFDLCKDINIVYRTELKDMQQLGTTSDTLLKVVQDFRLLLGNGSNVRG
NWRELYKQSAVKKSFELLQEKIDFLAEVIKLALGRSQTLDSIFERVESIK
IQLKRLSETNIVGYCYWYEGNGRQFGLHITPLTVADKFGAQLEAKEAAWI
FTSATLEVGGTFNHFCQRLGIENATQKILYSPFNYSEQSLLCVPRYLPNT
NQVNTLNSLGEMLLPVIEANKGRCFVLCTSYSMMRGLAEYFREKSHLSIL
LQGETSKGKLLEQFIKETHSVLVATSSFWEGVDVRGDALSLVIIDKLPFT
APDEPLLKARIEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGV
VIICDNRLVMRNYGETFLKSLPNSSRTRDLNKVIQFLQNK
>NTHI1167 dnaA, chromosomal replication initiator protein DnaA
MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVK
GWVETHYLAQIQQICQTLTQNPELRISLKEGVKPAPKVVENTPNISLRSE
SAVDFQAESSASVKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGE
PSANPFFLYGGTGLGKTHLLHAIGNGILADKPNARVLYIHANNFMQHMVK
AVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNNLFETGR
QIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEE
HNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDT
LKDILALQERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMA
LAKELTNRSLPEIGRAFDRDHTTVLNACREVPKFREQDNSIQEDWANLIR
TLSA
>NTHI1477 dnaB, replicative DNA helicase
MDFSTVFYFLFSPHFSLKSNRYLRYHRRHSSIEISPMASQPQIKSSDKKT
AQVSIPPHSIEAEQAVLGGIMLSNQHWDGIAERVIADDFYTFQHRLIFTE
MEHLMRNQSPIDLITLDQALRSHGVSDEVGGFAYLAELSNNTPNAINILA
YADIVREKAILRELISVGNRIAENSYSPKGQDIKLILDEAEREVFAIAEK
RTTSSEGPQNVINVLESTIEKIDILSKLENHSGVTGVTTGFTDLDKKTAG
LQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMM
RMIASLARVDQTKIRTGQNLDEIEWNKIASVVGMFKQKNNLFIDDSSGLT
PTDVRSRARRVYRENGGLSMIMVDYLQLMRAPAFSDNRTLEIAEISRSLK
ALAKELQVPVVALSQLNRTLEQRADKRPVNSDLRESGSIEQDADLIMFIY
RDEVYNDNSEDKGVAEIIIGKQRNGPIGRVRLKFNGQFSRFDNLAEQREY
RDDY
>NTHI0102 dnaB2, replicative DNA helicase
MTDKLIASIEAESAVIGALIIDNDKFDEIATLLRSDDFYVSAHKVLFEGV
SHLLTQGKPADILTLEQYFKDKKLIDQIGGLAYLADIIHNTPSASNITAY
AEIISRYSKQRRFLTLGQFIVTEMQSSKDEIELTSFEESVDKQYTNIVIE
QETDGVADLNASFERILSRMETSSINADPVSGTPTGIIELDRATTGGQPG
ELIIIAARPAMGKTTFAQTIAASTLDKFPDSPIQFYSQEMPADQLLERFM
AMRSRVSLQSIRQATELEEEEWTRLANAMGTIKKDWKDRLLIDDEASLTP
HRLRAKVRKNTRLYGKPKAIFIDYIQLMRTGNKTENRNLELAEISNDLKK
LAKETGCPIYALSQLNRGLENRANKRPINADLRDSGSLEQDADVIIHLYR
DEIYNPDTEDKGIAEIIIGKQRNGPLATVKTLFQGQYSIFENLTTQDRYY
E
>NTHI0897 dnaE, DNA polymerase III alpha subunit
MSFQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCG
VVSFYSEMLSSGMKPIIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITL
LLSKAYQRGYNDLPYIDQDWLIEHRDGVIILSGGTQGDVGKKLLKENVAE
IESAVAFYQEFFADHFYLALSRTGRPNEERYIQAALKLAERCDLPLVATN
DVMFLNAEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFRSEEDMCKLF
ADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDLSTEDFLVQKSKEGL
EERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQW
SKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP
DFDVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLG
HPYGFVDRISKLIPPDPGMTLAKAFETEPQLQTAYDSDEEVRALINMARK
LEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEGLHPVTHFDKNDVEYAG
LVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDPESFELL
KRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDN
FIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGY
TLGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEK
FAGYGFNKSHSAAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGL
YDECLRMGLKVTPPDINIGKHHFSVNEQGEIVYGIGAIKGVGEGPIEALV
AARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALSK
NLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQIL
DGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVV
ASRIAMTKKGNRLGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVAS
GQVSFDDFSGGLKMTVRELMTLDEARSRYVKSLAISLSEHQITPSFIKQF
KALLEPVSGGTLPINVYYQSPKGRALLRLGVQWSIIPTDEILTELVNLLG
ESAVELEFE
>NTHI0658 dnaG, DNA primase
MKGSIPRPFIDDLLTKSDIVDVINTRVKLKKAGRDYQACCPFHHEKTPSF
TVSQKKQFYHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYE
KRANHSGKPQANYQTKRNLYELMQEIATFYQNQLPLNTQAQEYLQQRGLS
PEIIERFQIGFVPNAMDTVLRKFGVNREEQQKLIELGMLSRNDRGNIYDK
FRNRIMFPIRDKRGRTVAFGGRVLTDEKPKYLNSPETITYHKGKELYGLY
EALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQIQLIFR
STEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEDPDTY
IRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLI
HQIPGEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKI
KKTPMRMVISLLLQNPELVKRMSESGVQALRAEAGFEILEKLTALCRQRE
GITTGQILEYFRNTSYSNPLEILATWDHLLDESDIINAFSQNYRRLNIQA
IERDIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKKQLVNPL
>NTHI1166 dnaN, DNA polymerase III, beta chain
MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLE
VELSSQTQLSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQ
SGRSRFTLTTQPAEEYPNLTDWQSEVDFQLPQNTLRRLIEATQFSMANQD
ARYFLNGMKFETEGNLLRTVATDGHRLAVCTISLEQELQNHSVILPRKGV
LELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKLIDGRFPDYRRVLPR
NATKTVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASNTEHE
EAEEIVDVNYNGEELEVGFNVTYILDVLNALKCNQVRMRLTDAFSSCLIE
NCEDSSCEYVIMPMRL
>NTHI0223 dnaQ, DNA polymerase III, epsilon chain
MINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIY
IKPDRPVDPDAIKVHGITDEMLADKPEFKDVAQDFLDYINGAELLIHNAP
FDVGFMDYEFRKLNLNVKTDDICLVTDTLQMARQMYLGKRNNLDALCERL
GIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFDEESVESEVIHVMQEK
TAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCLWEKRFG
NNNVH
>NTHI1939 dnaX, DNA polymerase III subunit gamma/tau
MSYQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVG
KTSIARLFAKGLNCVHGVTATPCGECENCKTIEQGNFIDLIEIDAASRTK
VEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYV
KFLLATTDPQKLPVTILSRCLQFHLKALDETQISQHLAHILTQENIPFEE
PALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLGLLDDNYSV
DILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQ
KSSDDNEHFSFLAKHISPEDVQFFYQVIVSGRKDLSNAPNRRIGAEMTLL
RALAFHPKFLTAVPKTNTTITPPPSTPSAVENTGNYVDVPVLSQSIKSAY
SQAKPNKTSIPNLASLSALDALEHLTQLENQERQEHKAESLAVVSETLHH
IQELDEEKSHKKMTALPVREMTEPKPKHIEKPTSPPNAAQAPQENSTEEN
SSDDNAEVAQDEQEILSADTYRWEWSNPELAKADTGVRPSDIKQAILKDI
TPELRLKIITQTQQQDEWADIVERSGVTGFSKELALNCFLQSKTDDEINL
GLHSEKSHLRQDRSIKNLVEALSKLQGKDIRLTINLDDSNVATPIEYRRN
IYQALREKAQNELQKDSKLQMLLNEFDAKLDVESIRPV
>NTHI1152 fis, DNA-binding protein fis
MLEQQRNPADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVND
LYELVLAEVEHPMLDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGMG
>NTHI1900 gyrA, DNA gyrase subunit A
MTDSIQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVL
FSMDREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR
YMLVDGQGNFGSIDGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNY
DGELMIPDVLPTRIPALLANGSSGIAVGMATNIPPHNLNEVLNGCLAYID
NNEITIDELMQHIPGPDFPTAALINGRKGIEEAYRTGRGKVYVRARATVE
TNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEG
IRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEI
IESFVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNS
KNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPA
QVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIR
EELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQP
LTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLK
VYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGG
IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRV
VRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASL
DLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIK
VSERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLI
RTADDEHVVSLERVCDADEEDSLEESSSEE
>NTHI0699 gyrB, DNA gyrase subunit B
MSETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN
AIDEALAGHCSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMT
VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLQLTIRRQGHVHEQFYH
LGEPQSPLTVIGETEATGTTVRFWPSSDIFAITTFDYKILAKRLRELSFL
NSGVSIRLIDKRDGSEDHFHYEGGIQAFVEYLNKNKNPIHPKPFYFTAEK
DGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSLNSYM
ENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKS
AVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGA
LDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLK
GKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMT
DADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQERYIK
DADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKLIGRL
NRHYPVPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQY
SVRTQFNAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQL
NGLLEEGAYVTRGEKVQPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNA
DQLWETTMDPNSRRMLKVSIKDAVAADQLFTTLMGDEVEPRREFIELNAL
RANLDV
>NTHI1787 haeIIM, modification methylase HaeII
MKEYKTIDLFAGIGGIRLGFEAFGCKNVFSSEWDKYAQSMYEVNFGEKPF
GDINDISPSDIPDHDILLAGFPCQPFSIAGKGLGFADTRGTLFFNIEAIL
KAKKPKAFLLENVKRLTTHDNGNTFKVINDKLNKLGYTVYHKVLNTLDFG
LPQKRERIYIVGFLDKLHFEFPKPIGKYEELSNILESDDVVPNNYFLSDE
LKRKRLSSITKDVPYPSIWHENISGNVSALPYSCALRAGGSYNYLVVNGV
RRLTGREMLRLQGFPDTFEINIPYSQVRKVAGNSVSIPVIRAIAGSMINS
LNMATPKINQAIQLSLLD
>NTHI0873 hepA, RNA polymerase associated protein homolog
MPFAIGQRWLSESENALGLGVITALDQRTVTIYFPAADETRIYAAAQAPL
SRIVFSKGETLSHQAGWQGEILDVQNMNGLLFYLVKTPQDEDVIVQERDI
SPIISFSQAKDRLFSAQIDRSSHFALRYRTLCHQQAQFKSPLRGLRGTRA
GLIPHQLHIAAEVGNRVNPRVLLADEVGLGKTIEAGMILQNQLFAEKVQR
VLIIVPETLQHQWLVEMLRRFNLHFSLFDEERCNDFDLDAVNPFMTESLI
ICSLNWLETHPNRVEQALDAQFDCLIVDEAHHLVWSESAPSAAYLLVEQL
ARIIPSVLLLTATPEQLGQESHFARLRLLDPERFFDYQTFVKEQKRYQPV
VNAIESLLANKALSAVEKNHISDLLLEQDVEPLFKAIASNNDEEQHRARQ
ELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLINF
LKLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAA
AYFADLENGAQVLLSSSIGSEGRNFQFAANLVLFDLPTNPDLLEQCIGRL
DRIGQKRDVQIYVPCAKDSPQIRLARWYNEGLNAFEQTCPMGMALFSQFE
DELEKVRSNSTALSENEFSELLKQTKTVREKLKIELEKGRDRLLELNSNG
GKQAQALADQIADEDNSPELVNFALKLFDIIGVEQEDLGANSIVISPTGT
MLVPDFPGLKEEGVTVTFDRELALAREEMEFLTWDHPMIRQGIDLVASGD
IGKAAMALLVNKQLPAGTLLIELIYIVESQSPKGLQLNRFLPPTPIRLLL
DNKGNNIGEQVAFETLHSKLKPLGKNIANQMVKMARGNIEALITRGDQLV
KSLAEPIITEAKNQADQQLSAEINRLQALRAVNQNIRQSEIDILEQQRTQ
SLDELSKANWRLDCLRVIVTNKE
>NTHI1626 himA, integration host factor alpha-subunit
MATITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGF
GNFELRDKSSRPGRNPKTGDVVPVSARRVVTFKPGQKLRARVEKTK
>NTHI1092 holA, DNA polymerase III, delta subunit
MNRIFPEQLNHHLAQSLARVYLLQGQDPLLLSETEDTLCQVANQQGFDEK
NTIQVDSQTDWAQLIESCQSIGLFFSKQILSLNLPENFTALLQKNLQELI
SVLHKDVLLILQVAKLAKGIEKQTWFITLNQYEPNTILINCQTPTVENLP
RWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDLLYPDHKLN
YNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLR
TLQRELFTLLELTKPQQRIVTTEKLPIQQIKTEFDRLKIWQNRRPLFLSA
IQRLTYQTLYEIIQELANIERLTKQEFSDEVWIKLADLSVKICL
>NTHI0582 holB, DNA polymerase III, delta' subunit
MTALYPWLMPIYHQIAQTFDEGLGHHAVLIKADSGLGVESLFNALAQKIM
CVAQGDKPCGQCHSCHLMQAHSHPDYHELSPIDGKDIGVDQVRDINEIVA
QHAQQNGNKVVYVQGAERLTEAAANALLKTLEEPRSNTYFLLQTDSSASL
LATIYSRCQVWNLSVPNEQMAVDWLKSESAAENQEILTALAMNLGRPLLA
LETLQQGLIEQRKNFLRQFWVFYRRRSPLELLPLFDKERYVQQVDWILAF
LSDCLKHKLEIDSHRQVADLGRGIEQFSDEQTALGLLQAIKIMQKVRSDL
LTINGVNLELMLLDGLTRLVTEVFETQ
>NTHI1753 holC, DNA polymerase III, chi subunit
MAKTAQFYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEID
ELLWQRDPNEFVPHNLSGEATQYPTPIEISWLGKRNLQHRDLLINLQQEI
PDFSHSFTQIIDFVPKDDALKTQARERYKQLRLQGWNLSTENVG
>NTHI0015 holD, DNA polymerase III, psi subunit
MNRRDLLLQEMGISQWELYRPEVLQGSVGISVAENIRFITVSNENISSSP
LLADVLLSLNLKKENCLCLNYDQIQHMECKQPIRYWLLSENNDQIDRTLP
FCKQAEQVYRSPSWQQFQSNHQAKRALWQQIQQP
>NTHI1231 hrpA, ATP-dependent helicase HrpA homolog
MKNSSVKHTLTPLQQSLFSQLNDIMRVDQRRLSARIHGIGKIKSQEAQQA
VAAEIQQQIEQARLRVEQRKSAVQNPIIFPESLPVSQRKVEIQKLLSEHQ
VIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAARSVAARIAE
ELETELGDLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCL
IIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSKHFNNA
PIIEVSGRTYPVEVRYRPVVEDDQDQLQGILNAVDELQAEGRGDILIFMN
GEREIRDTAEALQKQNLKYTEILPLFARLSAQEQNKIFHPSGLNRIVLAT
NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKG
RCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDI
EAFPFVDAPDKRHIQDGIKLLEELGAFETVQTKSGEKRLLTRVGRQLAQL
PVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQEKQQASDEKHR
RFADKKSDFLAFLNLWYYLQEQQKELSKNQFRRQCQKDFLNYLRIREWQD
IYHQIRLTVREMGLPINSEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLG
ARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWGRMVAEIEPEWIEPLA
EHLIKKSYSEPRWSKSRGAVIADEKVTLYGVPIVAARPVNYGAIDPTVSR
EIFIQSALVEGGWNTKHKFFKENQRLVQEVEELEHKSRRRDILVDDRTLF
EFYDQRIGTEVVSQKHFDTWWKKVQQKDPELLNFERSFLINDDAEQVSKL
DFPNFWYQGNLKLKLTYQFEPGTDADGVTVHIPLPLLNQVEMTGFDWQIP
GLREELVIALIKSLPKSYRRNFVPAPNYTQAFLSRAVPLEKPLLDTLIYE
LRRMTGVTVEAEHWNWEQIPSHLKMTFRVVDENGKKIAESMNLDELKFNL
KDRVQESISAVADDGIEQSRLHIWSFADLPQCYEQKQRGFSVKAFPAIVD
EKDAVGIKLFETEFEQSVAMQQGLRRLLLLNVPSPIKYLHEKLPNKAKLG
LYFTPFGRVLDLIDDCIACAVDKLIANFGGFVWDEAGFEKLRDFVRENLN
EVTVDIAQKVEQILTLTYQLNQRLKGKMDFTMAFALSDIKSQLAGLVYQG
FVQKSGYDRLPDLQRYLQAIDKRIDKLAQDVNRDRAAMLRVEQVQQAYQQ
LLAKLPKSKPISDEIAEIRYMIEELRVSLFAQQLGTKYQISDKRIANIIS
QY
>NTHI0554 hupA, DNA-binding protein HU
MRFVTIFINHAFNSSQVRLSFAQFLRQIRKDTFKESNFLFNRRYKFMNKT
DLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNE
RAARTGRNPQTGAEIQIAASKVPAFVSGKALKDAIK
>NTHI1947 ihfB, integration host factor beta-subunit
MTKSELMEKLSAKQPTLSAKEIENMVKDILEFISQSLENGDRVEVRGFGS
FSLHHRQPRLGRNPKTGDSVNLSAKSVPYFKAGKELKARVDVQA
>NTHI0367 kdkA, 3-deoxy-D-manno-octulosonic acid kinase
MHQFQQDNQYFIFNFDRTFEQATEFFQAEFWQKQERVIGSAKGRGTTYFL
QTEDWFGVNCALRHYYRGGLWGKLNKDRYRFSALETTRSFAEFHLLQRLY
EAGLPVPKPIAARIQKGKLGICYQADILTEKIENAQDLTALLQTQTLPKE
TWRQIGRLIRKLHDLQICHTDLNAHNILLQQAEQEQKCWLIDFDKCGKKS
GDFWKAQNLNRLKRSFEKEVGRMNIQFTEQNWADLTAAYHQ
>NTHI1352 ligA, DNA ligase
MIFCDLDRKNKFEWLDIFQDMFILRKLISPLIFKNTMKFYRTLLLFFASS
FAFANSDLMLLHTYNNQPIEGWVMSEKLDGVRGYWNGKQLLTRQGQPLSP
PAYFIKDFPPFAIDGELFSERNHFEEISSITKSFKGDGWAKLKLYVFDVP
DAEGNLFERLAKLKAYLLEYPTTYIEIIEQIPVKDKTHLYQFLAQVENLQ
GEGVVVRNPNAPYERKRSSQILKLKTARDEECTVIAHHKGKGQFENVMGA
LTCKNHRGEFKIGSGFNLNERENPPPIGSVITYKYRGITNSGKPRFATYW
REKK
>NTHI1265 ligN, DNA ligase
MRSFFSENFMTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQ
LKALELEHPEFLTSDSPTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDAEF
NAFVKRIEDRLILLPKPLTFCCEPKLDGLAVSILYVNGELTQAATRGDGT
TGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALE
HNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDLPTTHY
DRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLK
INDIALQNELGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPV
AKLEPVFVAGVTVSNATLHNGDEIERLNIAIGDTVVIRRAGDVIPQIIGV
LHERRPDNAKPIIFPTNCPVCDSQIIRIEGEAVARCTGGLFCAAQRKEAL
KHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLTRLERMGA
KSAENALNSLENAKSTTLDRFIFALGIREVGEATALNLANHFKTLDALKD
ANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKE
ASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAG
DGAGSKLAKAQELNITVLTEEEFLAQITR
>NTHI1906 mfd, transcription-repair coupling factor
MKTAFFQPDIPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDT
RSAVRLSRVLSELSSQNVCLFPDWETLPYDTFSPHQEIISSRLSALFHLQ
NAKKGIFLLPISTLMQRLCPPQYLQHNVLLIKKGDRLVIDKMCLQLEAAG
YRAVEQVLEHGEYAVRGSLLDLFPMGSAVPFRLDFFDDEIDSIRTFDVDT
QRTLDEINSINLLPAHEFPTDDKGIEFFRAQFRETFGEIRRDPEHIYQQI
SKGTLISGIEYWQPLFFAEMATLFDYLPEQTLFVDMENNQTQGERFYQDA
KQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVR
QKNLPVAALPEVTIQSQQKEPLGQLRQFIEHFKGNVLFSVETEGRRETLL
DLLSPLKLKPKQIQSLEQIENEKFSLLVSSLEQGFIIEQSLPVAIIGEAN
LLGERIQQRSRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVT
LDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDESAPLHKLGNE
AWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFSATFP
FEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMN
HKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILEN
LAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRAN
IDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNGDLVV
REAILREILRGGQVYYLHNDVASIENTAEKLTTLVPEARVIVGHGQMRER
ELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATH
DLEIRGAGELLGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELT
QQQADIELRVPALLPDDYLGDVNMRLSFYKRIAAAESKAELDELKVELID
RFGLLPDATKNLLQITELRLLVEPLNVVRIDAGTQGGFIEFSAKAQVNPD
KFIQLIQKEPIVYRFDGPLKFKFMKDLSDNKVRLEFVVDLLRTIAA
>NTHI0524 mutH, DNA mismatch repair protein MutH
MIPQTLEQLLSQAQSIAGLTFGELADELHIPVPIDLKRDKGWVGMLLERA
LGATAGSKAEQDFSHLGVELKTLPINAEGYPLETTFVSLAPLVQNSGIKW
ENSHVRHKLSCVLWIPIEGSRHIPLRERHIGAPIFWKPTAEQERQLKQDW
EELMDLIVLGKLEQITARIGEVMQLRPKGANSRAVTKGIGKNGEIIDTLP
LGFYLRKEFTAQILKAFLDVKPL
>NTHI0080 mutL, DNA mismatch repair protein MutL
MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGG
ANLIRIRDNGCGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALA
SISSVSRLTLTSRTEEQTEAWQVYAQGRDMETTIKPASHPVGTTVEVANL
FFNTPARRKFLRTDKTEFAHIDEVIRRIALTKFNTAFTLTHNGKIIRQYR
PAEAINQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWVATPNFSRTQN
DLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV
NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENHEEN
TVREPQPNYSIRPNRAAAGQNSFAPKYYEKPQQNQPHFSNTPVLPNHVST
GYRDYRSDAPSKTEQRLYAELLRTLPPTAQKDISDTAQQNISDTAKIIST
EIIECSSHLRTLSLIENRALLLQQNQDFFLLSLEKLQRLQWQLALQQIQI
EQQPLLIPIVFRLTEAQFQAWQQYSDNFKKIGFEFIENQAQLRLTLNKVP
NVLRTQNLQKCLMAMLTRDENSSPFLTALCAQLECKTFDALADALNLLSD
TERLLTQTNRTAFTQLLKPVNWQPLLDEI
>NTHI1118 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETALRGISPYLKNFTIEKVVVRKPKLRWAVSEELITLKNVKIV
DLTRRAKYLIIHTEKGYIIGHLGMSGSVRIVPQDSAIDKHDHIDIVVNNG
KLLRYNDPRRFGAWLWTENLDDFHLFLKLGPEPLSDEFNAEYLFKKSRQK
STALKTFLMDNAVVVGVGNIYANESLFICGIHPLKLAKNLTRNQCFSLVN
TIKDVLRKAIIQGGTTLKDFLQPDGRPGYFAQELLVYGNKDKPCPKCGGK
IESLIIGQRNSFFCPKCQKRG
>NTHI0834 mutS, DNA mismatch repair protein MutS
MISEENFQQHTPMMQQYLKLKAENPDILLFYRMGDFYELFYDDAKKAAAL
LDISLTKRGQSAGQPIPMAGMPYHAVEGYLAKLVQLGESVAICEQIGDPS
TSKGPVERQIVRIVTPGTVSDEALLPERQDNLIAAVYQEKEKFGLATLDM
TSGRFQLCEPADKETLRAELQRIVPVELLYCEEFNEMAAIEHCKGLRRRP
IWEFELSTAITLLNRQFGTKDLRAFGVEKSPLGLSAAGCLLQYAKETQRT
ALPHIQSISLIQNQDCIQLDAATRRNLELTQNLSGGTENTLASVLDKCVT
PMGSRLLKRWIHQPIRDVEKLKQRQQAIAEILNFDLVDELQPYLQLVGDM
ERILARVALRSARPRDLTRLRTALEQIPALRTIVQQKTSPFLTALFSQIA
DFSEQWDLLQRALIETPPLLIRDGGVIAEGYHAELDEWRMLSDGATQYLE
NLEKRERESTGIDTLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNA
ERYIIPELKEYEDKVLKSKGAALALEKQLYDELFDLLLPHLGSLQLASLA
LSELDVLVNLAECADTLNYVMPTFCDEVSVKIENGRHPVVEQVLKDPFIA
NPVELNHNRHLLIITGPNMGGKSTYMRQTALITLLAYIGSFVPADSARIG
PIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQATEQSLVLIDEIGRG
TSTYDGLSLAWACAEWLAKKIRSLTLFATHYFELTALPEQLEGIANIHLD
ALEHNNSIAFMHAVQDGAASKSYGLAVAALAGVPQSVIKLAKQKLTQLEK
NSSYSAEQQIQALREANHNQGELLFEQETDALREAIEKLDPDDLSPKQAL
AYLYQLKKMVG
>NTHI1077 mutT, mutator protein MutT
MDKKIIQVAAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDAGETPEQ
ALKRELEEEIGIVALNAELYERFQFEYPTKIISFFFYLVNEWIGEPFGRE
GQEGFWVEQRALDAGQFPPANAKLIHRLLNETHNFI
>NTHI0919 mutY, A/G-specific adenine glycosylase
MLAKSSINAPFAKSVLAWYDKFGRKHLPWQQNKTLYGVWLSEVMLQQTQV
ATVIPYFERFIKTFPNITALANASQDEVLHLWTGLGYYARARNLHKAAQK
VRDEFNGNFPTNFEQVWALSGVGRSTAGAILSSVLNQPYPILDGNVKRVL
ARYFAVEGWSGEKKVENRLWALTEQVTPTMRVADFNQAMMDIGAMVCTRT
KPKCDLCPLNIDCLAYKNTNWEKFPAKKPKKAMPEKTTYFLILSKNGKVC
LEQRENSGLWGGLFCFPQFEDKSSLLHFLAQEKVTHYQEWPSFRHTFSHF
HLDIHPIYAEMESALCVEQANLDWRKVMESTKEYQSNLSSAVKYWYDPQN
PEPIGLAQPVKNLLIQFVRNHYGKNSIL
>NTHI1996 nth, endonuclease III
MNKTKRIEILTRLREQTPHPTTELQYNSPFELLIAVILSAQATDKGVNKA
TEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKH
NGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNF
AAGKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIE
DLCEYKEKVEF
>NTHI0434 ntpA, dATP pyrophosphohydrolase
MRSDLTAFLMMQYKNNQSVLVVIYAKNTNRVLMLQRQDDPDFWQSVTGTI
ESGETPKKTAIRELWEEVRLEISENSTALFDCNESIEFEIFPHFRYKYAP
NITHCKEHLFLCEAEKEFIPVLSEHLAYQWVSPEQAIQMTKSSNNAEAIR
KYILKDK
>NTHI0557 nudC, NADH pyrophosphatase
MKILQQDDFGYWLLTQGSNLYLVNNELPFGIAKDIDLEGLQAMQIGEWKN
HPLWLVAEQESDEREYVSLRNLLSLPEDEFHILSRGVEINHFLKTHKFCG
KCGHKTQQTQDELAVQCIHCGYQTYPVICPSIIVAVRRGHEILLANHKRH
YSPNGGIYTTLAGFVEVGETFEQAVQREVFEETGISIKNLRYFGSQPWAF
PNSQMVGFLADYESGEITLQESEIHDAQWFSYDQPLPELPPTGTIARKLI
HVTLELCKAEHKCD
>NTHI1068 nudH, probable nucleoside polyphosphate hydrolase
MIDFDGYRPNVGIVICNRKGQVLWAKRCGQNSWQFPQGGINDNESAEQAM
YRELHEEVGLQPKDVRLLYVSKHWLRYKLPKRLLRYDSKPMCIGQKQRWF
LLQLVGDEKNINMKTTKSPEFDGWRWVSFWYPVRQVVSFKRDVYRKVMKE
FASVLFTDNPPIFSASREANSQSNSANKKYSQTKYTKRHFYKSKGQ
>NTHI0523 ogt, methylated-DNA--protein-cysteinemethyltransferase
MLFFYKTRRKMTALYYTYYPSPVGRLLILSDGESITHIDFEKEQYAPNPK
WLKQDELPVFQKVRLAFERYFNGEVERFADIPLKPEGTAFQQAIWQALRE
IAYGELSTYGELALRINNPKAVRAVGGAVGSNPISIIIPCHRILGKDRTL
TGFGGGLEAKRFLLQLEKIPYIDKGTENTKPRFFKKYHE
>NTHI1604 parC, topoisomerase IV subunit A
MTNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIV
YAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYR
YPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISEILLSELGQGTVDYQPN
FDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLL
DNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMRATWK
QEDGEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIR
IVLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEI
LNEWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHE
DDPKAELMVRFNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLN
LEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTP
AEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFI
DSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQQELLM
ASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAI
TSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQA
SLEFYSGKRKIVLKPEDLQKFRAERGRKGSTLPRGLHTNLEIMVVEP
>NTHI1605 parE, topoisomerase IV subunit B
MTTNYSAQEITVLKDLEPVQIRPGMYTDTTRPNHLAQEVIDNSVDEALAG
FASKIEVILHPDQSIEVTDNGRGMPVDTHPTEGVSGVEVILTKLHAGGKF
SNKNYEFAGGLHGVGISVVNALSERVDIQVKRNGEIYKIAFENGSKVEEL
EIIGTCGRRTTGTTVHFKPNPKYFDSAKFSVSRLRHLLRAKAVLCSGLEI
KFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPEKPFVGEFKGTNEAVS
WALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFCEFRNL
LPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVL
KDAFSLWLNQNVQDAEKLAEIAISSAQRRLRAAKKVVRKKLVSGPALPGK
LADCGSQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEV
SPDQVLGSTEIHDIAVALGIDPDSNDLSQLRYGKVCILADADSDGLHIAT
LLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVFYALDENEKEAILDR
LKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGEDQGSD
TLELMDMLLAKKRSEDRKNWLQAKGDQVDLSV
>NTHI1024 polA, DNA polymerase I
MAQIATNPLVLVDGSSYLYRAFHAFPSLTNAAGEPTNAMYGVLNMLKRLI
SQVQPTHIAVVFDAKGKTFRNEMFEQYKSHRPPMPDDLRKQIQPLHDMIR
ALGIPLLVVEGIEADDVIGTLALQASSLGKKVLISTGDKDMAQLVDDNIM
LINTMNNSLLDREGVIEKYGIPPELIIDYLALMGDSADNIPGVAGVGEKT
ALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKPNADLSYTLA
TIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQ
TTEQPVKMNQYQATSQDQSAVENTPKIQIDRTKYETLLTQADLTRWIEKL
NTAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTL
EKSTALAAIKPILENPDIHKIGQNIKFDESIFARHGIELQGVEFDTMLLS
YTLNSTGRHNMDDLAKRYLGHETIAFESIAGKGKNQLTFNQIPLEQATEY
AAEDADVTMKLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLI
DSNALFMQSNEIATRLTALEEQAYELAGQPFNLASTKQLQEILFDKLGLP
ILQKTPKGAPSTNEEVLEELAYSHELPKILVEHRGLSKLKSTYTDKLPQM
VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARE
GYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLD
EVTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDAKKYMDLYFQRYPS
VQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAP
MQGTAADIIKRAMIKLDEVIYHDPDIEMIMQVHDELVFEVRSEKVEFFRE
QIKQQMEDASELVVPLIVEVGVGQNWDEAH
>NTHI0458 priA, primosomal protein N'
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMRVLVPFGTQKRVAIVADFPT
KSDVPEDKLKAILQPLDLAPLFTPIYWDWLHWAANYYQAGLGDVLFQALP
VKLRNGESAVKNDRTFWRITDAGKNALEQGELKRSKKQAEALQCLSETDL
EKGNNNFSSAIWSALKAKGFIEEITIQTNPLSWQQRLGNNPIVNAENRLT
LNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIEEILKSGKQVL
VLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAI
VIGTRSALFTQFSNLGAIILDEEHDSSYKQQDSWRYHARDLAIVLAQKLN
IAVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI
QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCE
KPYTYHQHQNVLRCHYCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLK
TLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFP
NVTLVALVNVDSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTH
YPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALFKAQARHSDLA
ENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTL
QKALREYQQAELEKNSLVRLILDVDPQDLS
>NTHI0672 priB, primosomal replication protein N
MLKSNLKIDNRFSVMGVVSQLPKRLKSPSGIEHCKFLLEHRSDQIESGFT
RQAWLKMPVQISGNQLIEKTQSITVGSKILVVGFITSHKTQSGLCQLVLH
AEQIEFID
>NTHI1125 radC, DNA repair protein RadC homolog
MRSKSFLFFFYKYMENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKD
CPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQAITEMTK
RYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKE
RLFLGTINVSAVYPREIIKEALYCNAAALILAHNHPSGITEPSYSDQLIT
KKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL
>NTHI0117 radC2, putative DNA repair radC-like protein
MFKLNEQQQAILEQAQVILTKVMEEKPFYQGAQEFTEPSIAKLYFQTIIG
NEERENFVVLFLDRIHRLIKSEVMFQGSVSETSVSIREIIRQALKLNASA
IIIGHNHPTGNVEPSDADKYITKRLKEACELMDIKLLDHFIVSGSASFCF
TDNHLI
>NTHI1488 rdgC, recombination associated protein
MYWFRNAIIYQLTKQIDFENIEKQLKECEFTPCGSADVSHFGWSAPLVTS
ENLAHQANGKILLVAKREEKILPVEVVNRELNKRITALEEKEQRKLKKVE
RSSLKDDVIATLLPQAFSRIKTTALYIDTLKQLIFVDAASSKTAEDALAL
LRKSLGSLLVVPLAFNCAPCEVMTRWVTDTAPDWLILRKEVEIREKEDLG
VIHCKQKDVEDEEIIELVQNGLISKLALEWENNLKFVLIEDGTLKRLKFD
DNITEQNDDIVKEDVTARFDVDFVLMASVLGKTVDSLIKEFGGIRDRL
>NTHI0729 recA, RecA
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDV
ALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHAL
DPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAAL
TPKAEIEGDMGDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKI
GVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNETRVKVVKN
KLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIG
QGKANSMKWLNENIEKSDELEARLRAELVANPEQALMADIEQSENNTESE
SDFE
>NTHI1644 recB, exodeoxyribonuclease V beta chain
MAETIPLNPITLPLNQISLIEASAGTGKTYTIGSLYLRLLLKAGENNFSR
PLNVEEILVVTFTEMATEELKKKIRERITDAINKLTAFAKTQDKSAFKND
EFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTIHGFCRRMLMQYAFHSG
IHFNLELIKDQSDLLVRFANEFWREHFYPLDFESANFIATELVSPAKVLS
LLKADLGKDLQVEIENKQALSVPIQIFLPQYLGGYQKALNELKAFWLESA
DEILAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDY
QINTTLKDYFLQSSIEKNCEESTDKNKDKKPATPFYSPIFAELEKRVNAL
MTPDLLSKLTLYHYRQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQDAQG
DELAEMIRFQYPFAMIDEFQDTDSQQYAIFSKIYRDNPEKNTGFIMIGDP
KQAIYRFRGADIFTYLKASDEAQSRFELTKNYRSEKHLVDGVNALFDFPQ
SPFIYQNIKFTAVDSRDDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKI
CAISIQHWLKSAAENQAVFQNEDTRKTLQAANIAVLVRDKNEAALVKNEL
QKLGIASVYLSDQNSVFDSNVAKELAWVLKACLNVAERPILNAIATALFG
LNAADIHQIQQNEADWQRWADSFAQYQQTWQRQGILAMLHQILLEQGISE
RLLSQATGERDLTDFLHLAEILQQAATLHESESALLSWFEKQIQGEGRQE
AQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLAVPSKDPSKKDINIYYS
KERDETLWDIENRNLNALCEETFAEELRLLYVALTRAKYQMAFALPAQFD
KKWNALHYVLSQGEIGKEINLSNSKDTETLLQAFKEKMRDNVEICTKPNL
EAFPALSINTKNDELKAAEFTGNIEQDWRITSFTSIEQGHRRQNYFAESA
EKKHAVFDDAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHRHF
ENCYFSDLANIEEIDKLRQSLQLDETFTEPLQNWLQQISHTPLSHEIGIA
LADLANKDCIKEMPFYLAIWEHFDVEEFNRTLKAHHHLPSEPLQFEQIQG
MVRGSIDLVFRHNGKYYLIDYKSNFLGSTLADYNQEALKKEMLHSHYDWQ
YLIYTLALHRYLQSVVPHYDYARDFGGVFYLFLRGMNGEPQSGVFYDRPS
VELITELDGVF
>NTHI1113 recC, exodeoxyribonuclease V gamma chain
MFIIYYSNQLEKQKEILSSLFKSLPPEDPFQQDIILVQSPNMAQWLQIEL
AKETGISANLKFPMPASFIWQLYAQNLPATALENPFDKDSMMWRLIRLIP
TFLEKENFLPLRNYLASSPHSEQYKLYQLSSKIADLFDQYLVYRAEWIFA
WEKGEDEQITAQIRKQQPNLNDTLFEQIQGNIKWQGELWRALVVDVKSDV
DDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAIS
SEVDIHLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQNENQPLFSEEQ
LSQLENAQFDVTYQNENLQVGNPLLAAWGKMGRDFLYTLVRDEEHIPTYP
VNAYQEIKSNSLLGQLQSQILHLENKPLNIAKNDRTLTLHSCHSAMREVE
VLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYIQAVFGQKNRNAPQIP
FSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLALLDIPATRERFNIS
LADLPLVREWVADSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQG
IWQDSLGLNSSYGLKGELAGNLSYFFTALSLLHETLQQAHSIEKWQEILT
ALLSDFFVQNEDTSDTIFYIQEKINELAEHLKMLHFTEKLQADVIADVIT
MKLEDAPNSLKFLAGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPN
SFDLMQYHYQKGDRVRRDDDRYLFLEALLAARNYCYISYIGRSITDNQPK
EPSVLVSQLVDYINQGQKENVLTVIEHPMTAFSPDNFKYNEKFTRSFATK
WLPMAQFDASASNSEFAVTMTENPEKIEEVELDSLVSFVENPVKFFFEKQ
LGVYFRDKDERIADSENFTLSGLDNYSLNNDLIYLDEQNFADYFRQAEVK
GVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNEN
QKIRLFGYMEALFGDNSQVIHWHFAKYKDRYCIRPWIYYLIQCVTQENAV
PAKLITQDKVLELPPIEREVALAQLQIYVKDYLQSQIEIQLVPTVRNISD
FIVSDENSVSEKLQELTESNGFGSKADPYWSRVLAQTSRFKQPENIAKLL
KQTKAWFGLLFAQKKTRKAQS
>NTHI1646 recD, exodeoxyribonuclease V alpha chain
MLSVLHKLKEQRILSQGDYYFAKLIADKQCHTDYAEPIKNLAILLAALCS
WRYTQGNTCSQLDRYLEHNLFGLAYRTTEEDYLAEIREKIGYLAVEDWQN
ALCGHMAFTQDPVNQIAPMVFQFGALYFYRTWQDEYRIAQYIKNTLKKHR
TLAFSYDEIHQKLEKYFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGK
TTTVTRLLLVLQELFDCKLHIKLVAPTGKAASRLEESIKNALGFMQEKMN
VSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMI
DLPMMVKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVTQPYSHE
QVAYLLATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLAEFIQK
GKADDSLELFDHYPQELHFNALNDESDAVNQVVKSAVENYRTFLKMLDDL
RKQKIDPNAKNEQGISYAEAIQAQFNSVRFLTALRNNNLGVENLNKEIAL
ALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCLANGKVWFG
NREVLTNRIPAHEPAFMMTIHKSQGSEFEHTVMVLPTEVNPVLSRELVFT
GVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN
>NTHI1165 recF, DNA replication and repair protein RecF
MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGR
SFKSAVTNRIISYDEPHFTLFGQIQESQHQWSVGLQKLRQGNTLVKINGE
DGNKISDLAHLLPMQLITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSA
WSNLNRLLKQRNAALAQNQPYSAIKIWDVELAKLAHQVSQWRAEYAEALR
PEIEQTCQLFLPELEINVSFHQGWEKNADYYEILQQNFERDRALNYTFSG
PQKADFRFKAQGLPVEDVLSRGQLKLLMCVLRLAQGEHLMKEKQRHCIFL
IDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKKMFSV
HNGIINALN
>NTHI2051 recG, ATP-dependent DNA helicase
MSLELLDAVPLTSLSGVGAAISNKLAKIGIQNLQDLLFHLPIRYEDRTRI
TPIANLRPEQYFTIEGIVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFN
AGMRNSFQAGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTP
IYSTTEGLKQNSLRKLTDQALTLLDKVQIAEILPNEFNPHQYSLKEALRL
LHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVRLGTQQFSALP
LHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGS
GKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFEPFGIEVGW
LAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFHPHQLIMTATPIPRTLAMTVYADLDTSIIDE
LPPGRTPITTVVVSEERRAEIVMRVKNACVNEKRQAYWVCTLIDESEVLE
AQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVAT
TVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKP
PLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRIAN
LMRDRKMIPTVQHYAKSLIQKYPDVAESLICRWLNNKEIYSNA
>NTHI1385 recJ, single-stranded-DNA-specific exonuclease RecJ
MKKLIKRREIPVGNSVSNHPLLDRLYRARHIKNTKELDRTLKSMLNPNQL
YGIDQAVNLLVEAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFSDVD
YLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDNGVSSFDGVAFLKEKGI
RVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYLMLAVRA
KFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIR
ARRCRPGIVALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVEL
LLANEMSKARELALDLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPY
GITLYQPDWHQGVLGIVSSRIKDQYHRPVIAFAQDSEGILKGSARSIEGL
HMRDVLERIHSQHPNMILKFGGHAMAAGLSIREEHFADFQHIFNQTVADW
LDEEHMQSIIWTDGELNSNEFNLETAELIKSVGTWGQEFPEPCFDGEFKI
LDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSIKQARLAY
KLDINEFRGNRSLQLLVDYIEPIDE
>NTHI0083 recN, DNA repair protein RecN
MLTQLTINNFAIVRQLDIELAKGMSVITGETGAGKSIAIDALGLCFGQRV
ETSMVREGQERAEICATFQLESQNPAYHWLSEQELQDPDNPTECILRRII
NADGRSKAFINSTPVSASQLKEIAQYLVHINGQHASQLLLKNDYQLQLVD
NFAAHPELLVKMREDYQTWKNLQNQVKTFQQKVAENEARKQLLQYQVDEL
DEFNLRPNEYLELEDEQRRLSSSEQLTQLSQSALQILSENDTVNIDSLLY
RATQYIDELAELDPQYAEVQNMLNDALIQVQEATSEVQNLSSNIEQDPQL
LQEIEQRISQALQLARKHQVKPEDLVEQHKKLKAELTALLDFSESEEMLI
EQEKRAFEQMQATATALTASRQQSATRLAQNVTQSIKQLAMENAEFYVEL
NTDLDKVSANGADNVIFTLRSNLGQQPQPLAKIASGGELSRISLAIQVLT
SDQSAIPTLIFDEVDVGISGKTASVVGKLLRQLSERCQVLCVTHLPQVAC
HGHHQFNVEKFTVDNKTETKMTALSQAERVPALARLLGGSEITELALANA
QEMLDLVH
>NTHI0450 recO, DNA repair protein RecO
MQSELQRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSV
LQPFTPLLLRWTGKSTLKTLTKAEPAAITLPLQQIALYSGFYVNELLTRV
IESETPNPALFQHYLKCLTGLATETNVEPTLRLFEFQLLQMLGYGVDFLH
CAGSGEPVDFSMTYRYREEKGFVASLVKDNLTFYGRDLLAFEALDFSDDA
VRQAAKRFTRIALKPYLGDKPLKSRELFTQNILLLK
>NTHI0887 recQ, ATP-dependent DNA helicase RecQ
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVM
ATGNGKSLCYQIPALCFDGLTLVISPLISLMKDQVDQLQANGIEADFLNS
SQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDE
AHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQKDILRHLN
LKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGKSGIIYCNSRN
KVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG
MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAW
LQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKI
IERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTE
SAKVILKGEEPLELAMPRISSISKIAHNPQRQGVANYDKDLFARLRFLRK
QIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQP
FMALIQEHKAILANAQNND
>NTHI0570 recR, recombination protein RecR
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEA
MSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVEMPADIQAIEQTGQ
FSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEG
DATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID
>NTHI0838 relB, DNA-damage-inducible protein J, negative regulator of translation
MALTNSSISFRTVEQTKSEAYQVIEQYGLTPSQVFNMFLAQIAKTRSIPI
DLNYLRPNKETLAAIDELDSGNAESFFIEASENYSAEEFTKRILNGGQ
>NTHI0769 rep, ATP-dependent DNA helicase rep
MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQI
AAVTFTNKAAREMKERVAHSIGKEQSKGLLVSTFHTLGFDIIKREYKALG
FKSNMTLFDEHDQFALLKELTADVLKEDKDLLRELISVISNWKNDLISPK
QAFALARDAKYQTFAKCYERYATQIRAYNALDFDDLIMLPTLLFKQNEEV
RSKWQAKIRYLLVDEYQDTNTSQYELIKLLVGERACFTVVGDDDQSIYSW
RGARPENMVRLRDDFPRLNVIKLEQNYRSTQRILHCANILIDNNEHVFDK
KLFSTIGTGEKLLVIEAKNEEHEAERIVAELIAHRFSRKTKYKDYAILYR
GNHQSRLLEKVLMQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDG
AFLRIVNTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAY
DSLQKFGRWIVELNDEIQRSEPERAVRSMLSAIHYEEYLYEYATNPKAAE
MQSKNVATLFDWVADMLKGDETNEPMNLNQVVTRLTLRDMLERGEDDDDS
DQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSIDEDNVEEERRLAYVG
ITRAQKELTFSLCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTT
EQKQEKTQNQLDRLRAILKS
>NTHI1057 rhlB, ATP-dependent RNA helicase RhlB
MIFMQQDYLSQQRFSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGR
DVAGQAQTGTGKTMAFLTATFHHLLTHQDPNLEYPHPRTLILAPTRELAV
QISNDAEFLAKASGLKTALAYGGDGYDKQLQVIERGVDILIGTTGRVIDY
VKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQARLTMLFS
ATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLL
TLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSL
LKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTG
RAGESGVSISFACEEYAMNLPGIEEYIGHSIPVSQYETEALLELPKPYRL
KRAVPPQGHTRHRSYHTK
>NTHI0224 rnhA, ribonuclease HI
MQKQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELR
AVIEALNTLKEPCLITLYSDSQYMKNGITKWIFNWKKNNWKASSGKPVKN
QDLWIALDESIQRHKINWQWVKGHAGHRENEICDELAKKGAENPTLEDMG
YIEE
>NTHI1219 rnhB, ribonuclease HII
MFEYPQGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSE
KKRLALAEEIKEKALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQ
PHFVLVDGNKIPKDLAIPAQAVVKGDNLVAEISAASILAKVARDQEMEEL
DKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKKALEQF
>NTHI0442 rnt, ribonuclease T
MSDSQEIPYHNQLKNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMD
ENGYLHPDQKCHFHIKPFEGANINPESLKFNGIDIHNPLRGAVSELDAIT
GLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVKRNPFHPFG
MFDTASLAGLMFGQTVLVKACQAAKIPFDGKQAHSALYDTERTAKLFCYM
VNHLKDLGGFPHIASELEQEKTTEKETAL
>NTHI0431 ruvA, holliday junction DNA helicase RuvA
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTH
LVVREDAHLLFGFAQKTDRTLFRELIKTNGVGPKLALAILSAMSVEQFAY
AIEREELSKLTKIPGVGKKTAERLLVELKGKFKGIKQSDFFVESTHIPLS
PSIESHSESSSDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREAL
KAAL
>NTHI0430 ruvB, holliday junction DNA helicase RuvB
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKL
RQDALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAM
LTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKL
DLPPFTLVGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCL
NLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGGIISINVAKQA
LSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDV
LEPYLIQQGFLQRTPRGRIATSQTYRHFGLQKLSD
>NTHI0432 ruvC, crossover junction endodeoxyribonuclease RuvC
MSIILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTQVEDLPTRLKRIYA
GVTEIITQFQPNMFAIEQVFMAKNADSALKLGQARGTAIVAAVNNDLPVF
EYAARLVKQTVVGIGSADKVQVQEMVTRILKLSDKPQADAADALAIAITH
AHSIQHSLHIANSVKMTETQEKMTALLKTRYSRGRFRLKI
>NTHI0416 ruvX, putative holliday junction resolvase
MGITALAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLK
EWKPDVVIVGLPLNMDGTEQDLTLRARKFANRLQGRFGVNVHLQDERLTT
TQARSEIFERGGFKALKKGKIDGVSACLILESWFEYAEY
>NTHI1780 sbcB, exodeoxyribonuclease I
MAKDFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQT
NDYLPAPEAVMVTGITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNN
IRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINW
AYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKL
FQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLSWHPT
NQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVH
INKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFN
EERQFASNDNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKR
ILELLFHYRARHFYKTLTRAEQIKWQKYRQNKLEKSAVEFQSGLQRLAEE
HSDNSEKLSLLQQVYEYGIKLLG
>NTHI0289 seqA, SeqA
MKIIEVDEELYQYIASQTRSIGESASDILRRLLSLPVHTSSVDDLVLTSA
ETNKSADQKPEQAINVKEVNIKTTKKQSITAINQIVEKVQTLLNSTEFQE
ESKAVVRFLAILRVLYRTNPESFAQATESLQGRTRVYFARDEATLLMAGN
HTKPKQIPDTPYWVITNTNSGRKMLMLEGAMQSMELPETLIDEVRSYFTV
N
>NTHI1157 smf, Smf
MNDITYTLLRLMQVPKLGGVGIDKILSNITLNELLNYDDVAFRQMGWGAI
QIRRWFKPEAKFIEPALAWSQKEGNHLVNYFSPFYPFLLKQTANFPPLLF
VKGNLTALSQRQMAMVGSRYCTTYGEYWAKHFATELSLAGFTITSGLALG
IDGHCHQAVVNIQGQTIAVLGSGLEQIYPSKHQRLSAQIIENNGALVSEF
LPNQAPIAANFPRRNRIISGLSVGTLVVEATEKSGSLITARYALEQNREV
FAVPGNIQNESSQGCHRLIKQGAMLVENAKDILETLYQHSIHSQTEIDFD
QIAVPNYTPPPDPRRLVEAPSHPKLYSRIGYTPVSIDDLAEEFNLSVDVL
LVQLLDLELQDLIISENGLYKRI
>NTHI0546 srmB, ATP-dependent RNA helicase SrmB
MNLSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPT
GTGKTAAFLLPALQHLLDYPRRKPGPPCILILTPTRELAMQVAEQAEELA
QFTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRS
VEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFA
ERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFIETEKVTR
GIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT
VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVS
FVEAHDYKLLGKIKRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKA
RIKKKREEKKKTEAKKKVKLRHKDTKNIGKRRKPSNSNV
>NTHI0356 ssb, Single-strand binding protein
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREV
TEWHRIVFYRRQAEICGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYATEI
QGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQ
SAPQAEPPMDGFDDDIPF
>NTHI0109 ssb2, Single-strand binding protein
MAGINKVIIVGHLGNDPEMRSMPNGEAVANISVATSEAWTDKNTGERREV
TEWHRIVFYRKLAEICGQYLKKGAQVYIEGRLRTRKWQDQNGQDRYTTEI
QGDVMQMLGTRPQSADGANNSQPMPQQDASANAFDDSIPF
>NTHI1490 ssb3, Single-strand binding protein
MARNTNTVILVGHLGSDPEIRQFQNGGQIATFNLAIGDDYRDKQGNTVKR
THWIPIVVHGNSADVARQYLQKGSKICVTGKLVQESWQDQNGNNRTALKV
ATQSFEMLDSKANNETQQPSKDKEKPDPLSAAAEQDGFDDDIPF
>NTHI0774 tag, DNA-3-methyladenine glycosylase
MQQITRCPWVGEQPIYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWI
TVLKKRESYRAAFHQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVK
NAKAYLAMEKCGENFSNFIWSFVNHKPIVNDVPDLRSVPTKTEVSKALSQ
ALKKRGFVFVGETTCYAFMQSMGLVDDHLNDCPCKTR
>NTHI0141 tnpA, transposon Tn3 transposase
MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSRGDHNRL
GIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQREN
TRREHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATG
WLMQHRIILPGATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLL
GPTDCSRLSLLESLKKGPVTISGPAFNEAIERWKTLNDFGLHAENLSTLP
AVRLKNLARYAGMTSVFNIARMSPQKRMAVLVAFVLAWETLALDDALDVL
DAMLAVIIRDARKIGQKKRLRSLKDLDKSALALASACSYLLKEETPDESI
RAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRVRRFLPHLL
NTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQA
NRIKVYRSLGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGP
KPRLTISPLASLDEPDSLKRLSKMISDLLPPVDLTELLLEINAHTGFADE
FFHASEASARVDDLPVSISAVLMAEACNIGLEPLIRSNVPALTRHRLNWT
KANYLRAETITSANARLVDFQATLPLAQIWGGGEVASADGMRFVTPVRTI
NAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDSIFVLEGLLEQ
ETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDHDA
DYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSE
RPSGLTQAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARA
ICHGQKGEIRKRYTDGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQG
ETLNDEDIARLSPLCHGHINMLGHYSFTLAELVTKGHLRPLKEASEAENV
A
>NTHI0142 tnpR, transposon Tn3 resolvase
MSCPIFDLRYIFMRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKA
SGSSTDREGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGV
AVRFIDDGISTDGDMGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGI
KFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERANFTD
LSIPSMYLNTAI
>NTHI1799 topA, DNA topoisomerase I
MSKSLVIVESPAKAKTINKYLGSQYVVKSSVGHIRDLPTVGSSTGEKAKP
ISTKGMDAEEKAKIKAEKERNALVKRMGIDPYHDWKANYQILPGKEKVVS
ELKSLAKKADHIYLATDLDREGEAIAWHLREVIGGNNDRFSRVVFNEITK
NAIKQAFEKPEQLNMDRVNAQQTRRFLDRVVGFMVSPLLWKKVARGLSAG
RVQSVAVKLLVEREREIKAFQPEEYWEVAVLTNNQNKQAIRLDVTDYKGK
KFDPKNQKEAQSAVDFLNVSDYVVTDLETKPTSSRPRAPFITSTLQQTAS
TRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSQDALNMARSYIENHFG
AQYLPEKPNFYSSKENAQEAHEAIRPSDIRALPESLEGMEKDAVRLYDLI
WRQFLACQMPPAQYDSSTLTVSAGDYTLKAKGRILRFDGWTKVLPQIGKN
PEDQELPSVTVSEKLALKEVQPTQHFTKPPARFTEAALVKELEKRGIGRP
STYAAIISTIQERGYVRTENRRFYAEKMGEIVTDRLNESFGELMNYDFTA
NMEDTLDKIASGSVNWKTELNQFFKDFSSQLSKAELDELEGGMRPNNLVE
TDIKCPTCDRNMAIRTASTGVFLGCSGYALPPKERCKTTINLIPEAELLN
VLDESSETKALMDRKRCTKCGTAMDSYVIDAHRKIHICGNNPNCDGYLIE
EGSFKIKGYDGPVVECDKCGADMHLKLGRFGKYMGCTNCDNTRKILKSGE
VAPPKEEPVHFPELKCEKSDAYFVLRDGASGVFMSAHNFPKSRETRPVKI
AELVQYRERLPEKLAYLADAPQKDPEENEAIVRFSRKEKKQYVTSEKEGK
ATKWIVDFTNGKWVERKK
>NTHI0571 topB, DNA topoisomerase III
MRLFIAEKPSLARAIADVLPKPHQRGDGFIKCGDNDVVTWCVGHLLEQAE
PDAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLVN
AGDPDREGQLLVDEVFSYANLSAEKRDKILRCLISDLNPSAVEKAVKKLQ
PNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTGYDGVLSVGRVQT
PVLGLIVRRDLEIEHFQPKDFFEVQAWVNPESKEEKTPEKSTALFSALWQ
PSKACEDYQDDDGRVLSKGLAENVVKRITNQPAEVTEYKDVREKETAPLP
YSLSALQIDAAKRFGMSAQAVLDACQRLYETHRLITYPRSDCRYLPEEHF
AERHNVLNAISTHCEAYQRLPNVISTEQRNRCWNDKKVEAHHAIIPTAKN
RPVNLTQEERNIYSLIARQYLMQFCPDAEYRKSKITLNIAGGTFIAQARN
LQTAGWKELLGKEDDTENQEPLLPIVKKGQILHCERGEVMSKKTQPPKPF
TDATLLSAMTGIARFVQDKELKKILRETDGLGTEATRAGIIELLFKRSFL
TKKGRNIHSTETGRILIQALPDIATQPDMTAHWESQLTDISQKQATYQQF
MHNLNQMLPDLVRFVDLNALRQLSRIKMIKSDRVKPKSAVKKSSKSNGET
D
>NTHI0112 topB2, DNA topoisomerase III
MRENIMKLFLCEKPSQGNDIAKVLGATKRGEGCLSTPDGQLTVTWGIGHL
VEQFNPEEYDPAFKKWAFETLPIIPGKWGLSPKKETKKQFNVVMKLIKQA
KLVVIATDIDREGETIARELLDLAGFRGQIKRLWLSALDDTSIRKALGAL
KNNEETLPLYYAGLARSRADWLIGMNFSRLYTLLAQQQGYQGKPLSVGRV
QTPTLSLVVNRDREIKNFIPKQHFALQVMLSDGNQHFATQYVIPEQYCDP
DGLCLSAQVIQAANQQIRQFGQAKVESVETKRERQNAPLCFALSDLQSEA
NRLYGLGAQRVLDIAQSLYETHKATTYPRTDCGYLPESQFAEAPQIIQCL
LQSDNRLHPLAGMLNLNQKSRVWNDKKITAHHGIIPTMIKADISKMSDEE
LKLYDLIRRRYLAQFLPVSETDKTQIILKCGQHILSARGNVLIAPGWKIL
FGKSLDEDDDAPQALPTLKQGQICQISDSEIKTLQTSPPNHFTEGTLLTA
MKNAARFVTDERLKQRLRETEGLGTEATRAGTIQGLIDKGFLKKKGKSLL
ATDEAMTLIDNLPQMLKDPGLTALWEQALNQIAERTLSLEVFMQKQEVFV
RHLMADCLKKGMSLGNIEIRKCPKCGAPMIKRNGKNGAFFGCSAYPNCQH
IENIDSKKNTKSTKNLKKKSSKSVSEQISSLRSLLN
>NTHI0152 traC, conserved putative antirestriction protein
MKKRTQPAKDLYQQITDQILEALEQGVMPWQKPWDSGWPQMAIPCNGESG
RQYSGINVLLLWMSAIRKNFTQRKWVTFQGANHLGGQVRTGEKSTVIIFY
KQNMFEEKDDSGNIVLDENGDPKMKSSVFIRGHHVFNIEQCEGLEKYYEE
YPEPEKSSEMQARPDLDVLPNKMGMQLYNKAQDRACYMPRKDCIVMPDFK
KFNTADDYYATLLHECGHATGHKDRLNRDGVAKFDKFGSEQYAFEELIAE
LTSAFTCAHVNVCNNISQNAAYIEHWINALKADKKAIFRASSQAREATQF
LLNALELTSNEEAKLAA
>NTHI0025 ung, uracil-DNA glycosylase
MKNWTDVIGKEKEQPYFQHALQQVHLARANGKTIYPPQEEVFNAFKYTAF
EDVKVVILGQDPYHGANQAHGLAFSVKPEVAIPPSLLNMYKELTQDISGF
QMPSNGYLVKWAEQGVLLLNTVLTVERGMAHSHANLGWERFTDKVIAVLN
EHREKLVFLLWGSHAQKKGQIIDRTRHLVLTAPHPSPLSAHRGFFGCHHF
SKTNSYLESNGMKPIDWQI
>NTHI0355 uvrA, UvrABC system protein A
MENIDIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSLMEKPDVDSIEGLSPAISIEQKSTSHNPRSTVGT
ITEIYDYLRLLFARVGEPRCPDHNVPLTAQTISQMVDKVLSLPEDSKMML
LAPVVKNRKGEHLKILENIAAQGYIRARIDGEICDLSDPPKLDLQKKHTI
EVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMDNPKAEELIFSAN
FACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEDRVVQNPTI
SLAGGAVKGWDRRNFYYYQMLTSLAKHYHFDVEAPYESLPKKIQHIIMHG
SGKEEIEFQYMNDRGDVVIRKHPFEGILNNMARRYKETESMSVREELAKN
ISNRPCIDCGGSRLRPEARNVYIGKTNLPIIAEKSIGETLEFFTALSLTG
QKAQIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQ
IGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDA
IRAADHIIDIGPGAGVHGGQVIAQGNADEIMLNPNSITGKFLSGADKIEI
PKKRTALDKKKWLKLKGASGNNLRNVNLDIPVGLFTCVTGVSGSGKSTLI
NDTLFPLAQNALNRAEKTDYAPYQSIEGLEHFDKVIDINQSPIGRTPRSN
PATYTGLFTPIRELFAGVPEARARGYNPGRFSFNVRGGRCEACQGDGVLK
VEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEAREFF
DAIPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTG
KTLYILDEPTTGLHFADIKQLLEVLHRLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGQIIATGTPEQVAKVESSHTARFLKPILEKP
>NTHI1917 uvrB, UvrABC system protein B
MSEKINTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGK
TFTIANVIAQLNRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDY
YQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAI
YGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFRV
RGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIYP
KTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIE
MMNELGYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVP
QIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGTEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADK
NERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLG
EFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN
LNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGE
LLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMY
KFAQDLEFEKAAAIRDQLHQLREQFVFDN
>NTHI0067 uvrC, UvrABC system protein C
MFDAKKFLADVSHEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSS
KKTEALVASIHHIDTMLTSSETEALLLEHNFIKLYQPRYNVLLRDDKSYP
FILLTKERHPRITSYRGSKKFAGEYFGPYPHAGAVRETLSLLQKLFPVRQ
CENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVELARLFLQGKD
QQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDM
DIMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQ
FYLQGHQGRSIPNSIIVDRQLAEKSELEQLLTEQAGRKVTIQESVKGDKS
KYLQLAQVNAKAALNVQLKQSSRMSERYQALCDLLNLPEIKRMECFDISH
TMGNQTVASCVVFNQEGPLKSDYRRFNIEGITGGDDYAAMEQALQKRYER
DLEEDKIPDIIFIDGGKGQLNRALNVFQHLQVKWDKNRPHLIGVAKGVDR
RAGQEVLIISKQDREIHLPDDSLALHLIQHIRDESHNHAISGHRKKRQKA
FTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPGISLKLAE
TIFETLKND
>NTHI1359 uvrD, DNA helicase II
MMDISELLDGLNDKQRKAVAAPLGNHLVLAGAGSGKTRVLTHRIAWLIAV
ENISEGSIMAVTFTNKAAAEMRHRIQSTLAKHAQHQLVGMWIGTFHSIAH
RLLRAHHLDVGLPQDFQILDSEDQLRLIKRLLKLHNFDEKAFPPKQACWY
INNKKDEGLRPNDIEDFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIR
VYELFEKKPLILQRYQQRFQHILVDEFQDTNKIQYKWIKILSGKTGKVMI
VGDDDQSIYGWRGAQIENIQKFLKDFKAETIRLEQNYRSTANILNSANEL
IANNSDRLGKNLWTEGEKGDPVGIYAAFNELDEAKFVASQIQDWVEHGGK
LDDCAVLYRSNSQSRVIEEALIRCQIPYRIYGGMRFFERQEIKDALAYLR
LINNRQDDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQ
ENMLAGRASTALLRFQELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQ
EKGEKGEVRIENLEELVTATREFIKPDNAEEMTELTAFLTHASLEAGEEQ
ASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPSFRSFEEPGRLEEER
RLAYVGITRAQKKLTISYAESRRLYAKEERHLPSRFIAELPRECIQEIRL
RGTVTRAMNLAKVGSLSNTSAVENEWKMGQKVKHEKFGFGTVINVEGSEN
NTRLQIAFQAQGIKWLIAHLAKLEKVR
>NTHI0798 xerC, site-specific recombinase XerC
MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTP
SVVRFILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISA
PKQGWHLPKNMDGEQIQQLLANDSKEPIDIRDRAILELMYSSGLRLSELQ
GLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRALFNPKD
EALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEA
SSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK
>NTHI0428 xerD, Site-specific recombinase XerD
MKNLALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLD
AVDLQGFLGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLS
SPKLPSRLPKYLTEQQVSDLLNTPDVKVPLELRDKAMLELLYATGLRVTE
LVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEAAYWVRQFMLYGRPVLL
NGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHVLRHAFA
THLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG
>NTHI0518 xseA, exodeoxyribonuclease VII large subunit
MSDNIYSVSQLNSAARQMLEGNFSQIWLTGEISNFTQPVSGHWYLTLKDE
NAQVRCAMFRMKNLRVAFRPQNGMQVLVRANVSLYEPRGDYQLIIDSMHP
AGEGLLQQQFEALKMKLAAEGLFAQNLKKTLPHFSKAVGIITSSTGAALQ
DILHILARRDPSLKVVIYPTAVQGKEATAEIVQMIELANARQEVDVLIVG
RGGGSLEDLWCFNEEEVARAIFRSTLPIISAVGHETDVTIADFVADLRAP
TPSAAAELVSRNQDELLQQLRHQQQRLDMAFDRLFTRKSQRLKQLALRLQ
NQHPQNQLRAQQAKNEQLTHRLQLAILRQFENTQQKFTALSVRLKQNPLP
YRIQRYQQGLEQLKVRLNFCVNRQVTERQNKLATLCGKLDGLSPLKVLAR
GYSIAENPQGKAIVSVKDVNQGDFITTQVADGKIVSKVL
>NTHI1693 xseB, exodeoxyribonuclease VII small subunit
MARKPASSQDFETTLAQLENIVTHLENGDLPLEEALKEFEQGVQLAKLGQ
ERLQQAEQRIQILLQKTEDAPLNDYKGNDYEGNA
>NTHI0049 xthA, exodeoxyribonuclease III
MKFISFNINGLRARPHQLEAIIEKYQPDVIGLQEIKVADEAFPYEITENL
GYHVFHHGQKGHYGVALLTKQEPKVIRRGFPTDNEDAQKRIIMADLETEF
GLLTVINGYFPQGESRAHETKFPAKEKFYADLQQYLEKEHDRSNPILIMG
DMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLYDYGLEDSFR
KLNPTANDKFSWFDYRSKGFDDNRGLRIDHILISQKLAERCVDVGIALDI
RAMEKPSDHAPIWAEFK