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2024-05-11 17:37:43

Gene list

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COG category: Replication, recombination and repair
Organism: Haemophilus influenzae 86-028NP, 86-028NP

Number of genes found: 129

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Haemophilus influenzae 86-028NP, 86-028NP
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA NTHI1740 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1592079 513 + 0.395712
NA NTHI0581 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; EC=3.1.21.-; chromosome CDS541172 783 - 0.413793
NA NTHI1495 modification methylase DpnIIB-likeSubName: Full=Modification methylase DpnIIB-like; EC=2.1.1.72; chromosome CDS1418398 738 - 0.426829
NA NTHI0693 conserved hypothetical transposase-like proteinSubName: Full=Conserved hypothetical transposase-like protein; chromosome CDS651035 354 - 0.355932
NA NTHI1522 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1431596 960 + 0.369792
NA NTHI1447 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1368502 165 - 0.4
NA NTHI1887 predicted capsid scaffolding proteinSubName: Full=Predicted capsid scaffolding protein; chromosome CDS1723299 816 - 0.417892
NA NTHI1523 predicted DNA modification methylaseSubName: Full=Predicted DNA modification methylase; chromosome CDS1432534 420 + 0.347619
NA NTHI0444 predicted primosomal replication protein NSubName: Full=Predicted primosomal replication protein N; chromosome CDS422049 588 + 0.329932
NA NTHI1711 putative integrase/recombinaseSubName: Full=Putative integrase/recombinase; chromosome CDS1575288 357 + 0.392157
NA NTHI1650 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1533727 729 + 0.301783
NA NTHI0322 predicted uracil-DNA glycosylaseSubName: Full=Predicted uracil-DNA glycosylase; chromosome CDS303878 645 - 0.341085
NA NTHI1487 modification methylase Bsp6I-likeRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS1411560 1164 - 0.464777
NA NTHI0164 putative site-specific recombinaseSubName: Full=Putative site-specific recombinase; chromosome CDS146462 843 + 0.298932
NA NTHI0095 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; EC=3.1.21.-; chromosome CDS87739 789 + 0.386565
NA NTHI1480 prophage CP4-57-like integraseSubName: Full=Prophage CP4-57-like integrase; chromosome CDS1407432 1260 + 0.36746
NA NTHI1492 predicted recombinational DNA repair protein, RecE pathwaySubName: Full=Predicted recombinational DNA repair protein, RecE pathway; chromosome CDS1416817 921 - 0.408252
NA NTHI1828 predicted micrococcal nuclease-like proteinSubName: Full=Predicted micrococcal nuclease-like protein; chromosome CDS1682699 483 + 0.358178
NA NTHI0778 Zn-finger domain associated with topoisomerase type ISubName: Full=Zn-finger domain associated with topoisomerase type I; chromosome CDS731141 537 - 0.383613
NA NTHI0156 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS137401 678 + 0.445428
NA NTHI0201_1 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS184665 297 - 0.282828
NA NTHI1445 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1367371 168 + 0.446429
NA NTHI1509 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1425497 510 - 0.390196
NA NTHI0928 predicted N6-adenine-specific methylaseRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; chromosome CDS894225 582 - 0.371134
NA NTHI1499 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1420617 312 - 0.445513
NA NTHI1958 predicted endonuclease distantly related to archaeal holliday junction resolvaseRecName: Full=UPF0102 protein NTHI1958; chromosome CDS1803232 360 + 0.363889
NA NTHI0419 prophage CP4-57-like integraseSubName: Full=Prophage CP4-57-like integrase; chromosome CDS402483 1212 + 0.344059
NA NTHI1942 predicted ATPase involved in DNA replication initiationSubName: Full=Predicted ATPase involved in DNA replication initiation; chromosome CDS1787143 696 + 0.331897
NA NTHI1460 modification methylase BepI-likeRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS1387289 1224 - 0.332516
NA NTHI1183 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1130065 348 + 0.373563
NA NTHI1458 predicted ATPase related to the helicase subunit of the holliday junction resolvaseSubName: Full=Predicted ATPase related to the helicase subunit of the holliday junction resolvase; chromosome CDS1384709 1341 + 0.417599
NA NTHI1966 conserved putative deoxyribonucleaseSubName: Full=Conserved putative deoxyribonuclease; EC=3.1.21.-; chromosome CDS1813729 756 - 0.35582
NA NTHI0683 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS642171 543 - 0.305709
NA NTHI1653 conserved hypothetical transposase-like proteinSubName: Full=Conserved hypothetical transposase-like protein; chromosome CDS1535066 372 - 0.354839
NA NTHI0158 resolvase/integrase-like proteinSubName: Full=Resolvase/integrase-like protein; chromosome CDS138937 600 - 0.368333
adpP NTHI0519 ADP-ribose pyrophosphataseSubName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; chromosome CDS487948 654 + 0.414373
comB NTHI0564 competence protein BSubName: Full=Competence protein B; chromosome CDS524801 507 - 0.339251
dam NTHI0307 DNA adenine methylaseSubName: Full=DNA adenine methylase; EC=2.1.1.72; chromosome CDS284919 861 + 0.348432
deaD NTHI0337 Cold-shock DEAD-box protein A homologRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS323624 1842 + 0.418567
dinG NTHI0507 probable ATP-dependent helicaseSubName: Full=Probable ATP-dependent helicase; chromosome CDS474885 1923 + 0.369735
dnaA NTHI1167 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1112123 1365 - 0.396337
dnaB NTHI1477 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS1403911 1515 - 0.39604
dnaB2 NTHI0102 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS93172 1356 + 0.382006
dnaE NTHI0897 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS863014 3480 - 0.418103
dnaG NTHI0658 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS620591 1782 + 0.395623
dnaN NTHI1166 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1110830 1101 - 0.396004
dnaQ NTHI0223 DNA polymerase III, epsilon chainSubName: Full=DNA polymerase III, epsilon chain; EC=2.7.7.7; chromosome CDS213629 768 - 0.361979
dnaX NTHI1939 DNA polymerase III subunit gamma/tauSubName: Full=DNA polymerase III subunit gamma/tau; EC=2.7.7.7; chromosome CDS1782897 2067 + 0.380261
fis NTHI1152 DNA-binding protein fisRecName: Full=DNA-binding protein Fis; chromosome CDS1093772 300 + 0.376667
gyrA NTHI1900 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1738382 2643 + 0.41468
gyrB NTHI0699 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS655289 2421 - 0.412639
haeIIM NTHI1787 modification methylase HaeIIRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS1631992 957 - 0.308255
hepA NTHI0873 RNA polymerase associated protein homologRecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS829284 2772 + 0.406566
himA NTHI1626 integration host factor alpha-subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1512544 291 + 0.381443
holA NTHI1092 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS1038568 1035 + 0.360386
holB NTHI0582 DNA polymerase III, delta' subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS542009 984 - 0.406504
holC NTHI1753 DNA polymerase III, chi subunitSubName: Full=DNA polymerase III, chi subunit; EC=2.7.7.7; chromosome CDS1602769 435 + 0.367816
holD NTHI0015 DNA polymerase III, psi subunitRecName: Full=DNA polymerase III subunit psi; chromosome CDS11864 405 - 0.407407
hrpA NTHI1231 ATP-dependent helicase HrpA homologSubName: Full=ATP-dependent helicase HrpA homolog; chromosome CDS1171476 3909 - 0.420568
hupA NTHI0554 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS519256 411 - 0.347932
ihfB NTHI1947 integration host factor beta-subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS1790467 285 - 0.347368
kdkA NTHI0367 3-deoxy-D-manno-octulosonic acid kinaseRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS352020 726 - 0.381543
ligA NTHI1352 DNA ligaseSubName: Full=DNA ligase; EC=6.5.1.1; chromosome CDS1280769 915 + 0.353005
ligN NTHI1265 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1198804 2040 - 0.406373
mfd NTHI1906 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1747115 3441 - 0.401918
mutH NTHI0524 DNA mismatch repair protein MutHRecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; chromosome CDS492005 672 + 0.421131
mutL NTHI0080 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS71595 1890 + 0.395767
mutM NTHI1118 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1064182 816 - 0.373774
mutS NTHI0834 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS783990 2586 + 0.423434
mutT NTHI1077 mutator protein MutTSubName: Full=Mutator protein MutT; EC=3.6.1.-; chromosome CDS1022726 411 + 0.384428
mutY NTHI0919 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS886928 1137 + 0.387863
nth NTHI1996 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1848282 636 + 0.383648
ntpA NTHI0434 dATP pyrophosphohydrolaseSubName: Full=dATP pyrophosphohydrolase; EC=3.6.1.-; chromosome CDS414607 474 - 0.362869
nudC NTHI0557 NADH pyrophosphataseRecName: Full=NADH pyrophosphatase; EC=3.6.1.22; chromosome CDS520294 795 - 0.386164
nudH NTHI1068 probable nucleoside polyphosphate hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS1015526 591 + 0.394247
ogt NTHI0523 methylated-DNA--protein-cysteinemethyltransferaseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS491439 570 + 0.403509
parC NTHI1604 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1492778 2244 - 0.403743
parE NTHI1605 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1495088 1899 - 0.419695
polA NTHI1024 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS967051 2793 - 0.405299
priA NTHI0458 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS433277 2193 - 0.412677
priB NTHI0672 primosomal replication protein NRecName: Full=Primosomal replication protein n; chromosome CDS634652 327 - 0.35474
radC NTHI1125 DNA repair protein RadC homologRecName: Full=UPF0758 protein NTHI1125; chromosome CDS1069905 705 - 0.337589
radC2 NTHI0117 putative DNA repair radC-like proteinSubName: Full=Putative DNA repair radC-like protein; chromosome CDS106418 471 + 0.33758
rdgC NTHI1488 recombination associated proteinSubName: Full=Recombination associated protein; chromosome CDS1413329 897 - 0.400223
recA NTHI0729 RecARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS684631 1065 + 0.388732
recB NTHI1644 exodeoxyribonuclease V beta chainSubName: Full=Exodeoxyribonuclease V beta chain; EC=3.1.11.5; chromosome CDS1524815 3636 + 0.356986
recC NTHI1113 exodeoxyribonuclease V gamma chainSubName: Full=Exodeoxyribonuclease V gamma chain; EC=3.1.11.5; chromosome CDS1058095 3366 + 0.366904
recD NTHI1646 exodeoxyribonuclease V alpha chainSubName: Full=Exodeoxyribonuclease V alpha chain; EC=3.1.11.5; chromosome CDS1528450 1923 + 0.388456
recF NTHI1165 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS1109749 1080 - 0.4
recG NTHI2051 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS1907959 2082 - 0.416427
recJ NTHI1385 single-stranded-DNA-specific exonuclease RecJSubName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS1313342 1728 + 0.398148
recN NTHI0083 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS77463 1677 - 0.380441
recO NTHI0450 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS426467 711 + 0.414909
recQ NTHI0887 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome CDS847693 1860 + 0.398387
recR NTHI0570 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS530345 603 + 0.434494
relB NTHI0838 DNA-damage-inducible protein J, negative regulator of translationSubName: Full=DNA-damage-inducible protein J, negative regulator of translation; chromosome CDS791015 297 + 0.356902
rep NTHI0769 ATP-dependent DNA helicase repSubName: Full=ATP-dependent DNA helicase rep; EC=3.6.1.-; chromosome CDS723521 2013 - 0.407352
rhlB NTHI1057 ATP-dependent RNA helicase RhlBRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS1003463 1257 + 0.404932
rnhA NTHI0224 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS214457 465 + 0.348387
rnhB NTHI1219 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1161534 594 - 0.430976
rnt NTHI0442 ribonuclease TRecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS419661 690 + 0.404348
ruvA NTHI0431 holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS412559 615 - 0.378862
ruvB NTHI0430 holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS411544 1008 - 0.421627
ruvC NTHI0432 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS413236 573 - 0.418848
ruvX NTHI0416 putative holliday junction resolvaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS400894 420 + 0.402381
sbcB NTHI1780 exodeoxyribonuclease IRecName: Full=Exodeoxyribonuclease I; EC=3.1.11.1; chromosome CDS1622370 1422 - 0.35443
seqA NTHI0289 SeqARecName: Full=Negative modulator of initiation of replication; chromosome CDS267655 606 + 0.361386
smf NTHI1157 SmfSubName: Full=Smf; chromosome CDS1097360 1122 - 0.396613
srmB NTHI0546 ATP-dependent RNA helicase SrmBRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome CDS510036 1320 - 0.412121
ssb NTHI0356 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS344428 507 + 0.433925
ssb2 NTHI0109 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS99930 423 + 0.41844
ssb3 NTHI1490 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1415758 435 - 0.432184
tag NTHI0774 DNA-3-methyladenine glycosylaseSubName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.20; chromosome CDS728322 564 - 0.397163
tnpA NTHI0141 transposon Tn3 transposaseSubName: Full=Transposon Tn3 transposase; chromosome CDS124955 3006 - 0.515968
tnpR NTHI0142 transposon Tn3 resolvase chromosome CDS128088 639 + 0.494523
topA NTHI1799 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1644504 2607 - 0.393556
topB NTHI0571 DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS530963 1956 + 0.403885
topB2 NTHI0112 DNA topoisomerase IIIRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS101746 2061 + 0.388646
traC NTHI0152 conserved putative antirestriction proteinSubName: Full=Conserved putative antirestriction protein; chromosome CDS134387 954 + 0.3826
ung NTHI0025 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS18688 660 + 0.392424
uvrA NTHI0355 UvrABC system protein ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS341444 2832 - 0.411017
uvrB NTHI1917 UvrABC system protein BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1758207 2040 + 0.396569
uvrC NTHI0067 UvrABC system protein CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS59036 1830 - 0.393443
uvrD NTHI1359 DNA helicase IISubName: Full=DNA helicase II; EC=3.6.1.-; chromosome CDS1285693 2184 - 0.39881
xerC NTHI0798 site-specific recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS749861 888 - 0.402027
xerD NTHI0428 Site-specific recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS410139 894 + 0.414989
xseA NTHI0518 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS486452 1320 + 0.415152
xseB NTHI1693 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1561840 255 - 0.380392
xthA NTHI0049 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS43638 804 - 0.368159