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# Rickettsia felis URRWXCal2, URRWXCal2; California 2

>RF_0975 Transposase
MIILEQIMEIKILNKHGKSLRSIAREVGVSVNTVRKYLKYDGSPKYKDRS
ELVTKLAPYKDYLSERIKSAHPVSLPGTVLFQEIKELGYTGGITQLRDYL
RSIKPVAKQEDIIRFETASGKQMQVDWIEFRKGKDPLSAFVATLGFSRAS
YIEFVNNEKLITLIECHKRAFDYFGGVPEEVLYDNMKTVILDRDTYGPWD
TPF
>RF_1139 Transposase
MCKFLKGCIKENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_1071 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMSIPNWNKAMAHFLIKFDERI
>RF_1136 unknown
MQEVAKGAEIVTKFSNVSPEFKNDGWLKAFANSPVKDPVLYAINNNITIE
GKDAKEWAYENNYQIKTSIGLKKEIIKEQQWSKDLEGKWKETEVEVKKDK
VEVQISDPVKSMRTQDKSSGEKLESLIVDFTKQATTKNVTDKEVAKFYDN
IMKELKKENYLTQQDIEGIKKDLKYQDNIENTTNLLNAKSFKLNSKDTIY
YKVGNFCEKIGLSNISNYFMKKISPENLNEIHDTQKLIAESIKIGNILKQ
KGNQGIQPKRVEAVKEIAFSKLQAKRENQKQR
>RF_0342 Transposase
MIILEQIMEIKILNKHGKSLRSIAREVGVSVNTVRKYLKYDGSPKYKDRS
ELVTKLAPYKDYLSERIKSAHPVSLPGTVLFQEIKELGYTGGITQLRDYL
RSIKPVAKQEDIIRFETASGKQMQVDWIEFRKGKDPLSAFVATLGFSRAS
YIEFVNNEKLITLIECHKRAFDYFGGVPEEVLYDNMKTVILDRDTYGPWD
TPF
>RF_0362 unknown
MHCVFYTNYPIPKIFTLAEGITAQHAKKVLLLELQSSNINLKGISNNPLN
FTIHNSKGLLAFAEMIGRNNKNQLKHRILEEVNSDLSTICKISNTKEETF
TINHIVHYKTGNVQTDVPGLGKYDEILSKFEQKPEYKHAIIKRIFEVVHA
KESTQNIEELPRKLNYFAEKLTHLLFVAETHRNNATLFTAPMFLELIDKN
SIFLLYKEFFPMSAEHTVAQTRGILKNYKYMLPNSCPIDYDTTNVQNGNL
LLIKEGNILIEWLSKKLNNYKLANIARIFDILASMQFYKNMDNVKINDIK
SFLEKVHELENYPTDLLDSLNQNLTALILKVNNIGERNLKLTKTKLLEKK
DFSRDLKNLIEITYLEFTESLKNIEGFLAQKQASLKKEIKKILPEILQIL
CDKIKEWYDIDTPEYAKDVLKDITLKFNQTISPRKRLKLSFSKKVDMYKE
NDDDSNQTVETTSIDDSMKKYYELIGEHTNTICD
>RF_0850 unknown
MSLIIISISEAAKSISEIVRANPSMAKEAFSVLKKLINDHNTENFIRCDI
ASSLAEIVAVIPSEEIIAGLKELLNNPNCYIRYVAVWSLVEIIEIKPNIA
IEVFIGIKELIINSNIDNYIRCEAVMNLAGIVEVIPHLEERAYSVLKGLL
LNNPYYNEDVKYAAAISLINIINVKSFDKASYKQVNRLINIIALNRTQNF
DKELYIEIDAKIVLHKITHHLTQEYEKGKNPEVIEWFNRCFNELPNISET
RIFLKEICQSILKSGVINELESKFILSCIKKYNFTFTVSVSKEQEIEGKI
IFEDRNYEIFKTDNSARKIVSLEEFATKLLVETDDPLAEQYKTHKPLFLN
KGLALKIAASDINNVSSITNENAKLSTEKYLLSYAGDNKDKFVMLLEKRS
IFGEHLIYKFSEVNLKKIATIYPAEINKELRGQLFNELESQEQFNCFIKN
EKLKPEEEKQIFKCPNKLKFATKIIHDAKIRLKISNFKLLDAGANKRLDA
HEIKIDSHNKILKDSRTIQKAEIFREAESLAQESPLLYDYCNTFYWNIDG
IIKACLIAETKMFKNNINEKEGIIKILAKSLGLITQNLLIDILTDLACSI
VEVRRERKRGNEVISINDIIRNAIGMEDLDDSLKKIAINNT
>RF_1008 Endo/excinuclease amino terminal domain protein
MGCPNRHCEKNYKVIRRSNLRSLLLLHEVATLCLSLLAMTFFFVLYKLMK
QPIVYIVTNKKNGILYTGVTSNLIKRIYEHKNYTIKGFSKKYNCKILVFY
EIHQTMNSAINREKQIKAGSRDKKIKLIEQTNINWDDLYSEIIL
>RF_0112 unknown
MNFSNYPFIKEDIQCIADYLRNNKTIERVFLDNCGINDKQVKILAEIFRL
NKTITKLSLVSNKAITNIGIKTLLEIKHNNQYKRAELEISPNFNDNSEFQ
LIPEIDILNKNSVNTYLKKTKARNLDSEIENKNLQPLKNYHELKRPFIKN
GNKLLKLIAESHNEITKTGNSINKLIVMVGMNGVGATTLSCFLSGQKLEE
DEDRSLYAKEPKYNEKIHHQANNGYKLVNNFFISDDEGGINIIECPGIHN
KPINSIQTILNLYIYRQILELAEKVRFSVVIRDNSANDVVDSTYQQFTNI
FRDSNGQLTPEIKEQLKDAVSYIISVADYKTNEEKKAKIKVEESKLRKDA
KRQNLDEGQKFIIEELGKSVNLFKKPSGDTKSFLETLDTKDFFIVIDAIS
LVVRTIANNEIEAEREQIFSYIEAIFQSKNEEEKNANIVLIDEWQRKILD
VLAISKDTGDVLPKSASVNFATTIEVISQSKNEEEKNTNITVIDGQKHPD
LYVLAPSKGTGDVLPNSASNTNSTITAEEQKNIMTTALKFELQDILSKKN
LYEPLIIEQVKKLMSLCIKPFSDTLNIKDLSQAKDLNQVKNLNQVKDSSQ
NKWATIKEIYIKPQKSETQKPILSQVLSNQVKENILTIGKIIINFFQVNK
HNIISPFISSDNLNLHQGLDSDTFSNNYSLIQPYLPKKILNKSPAQETEE
SFFPALKEIEELNEIYIKYSDDHLTMVTSFLEIIRKFYESKDISAKIHFQ
EILGNYVYFLNQQWKALSFCKKLYPQSQKWQPLTEAVDKAKKILIEENLL
DIKLKNNGTTKYYTEALEWLDKLTGPQVEVVVIAINEIKANAYYYLGMIY
ENSESQLDWFVAIREYIKTLEVDKDFNFLYGHDTIPYISSNICKKIGDLF
LVLGKWYKSKNENVSAIKLTHEAMKYFKVSLSIADIEESSNILHEIFSIL
KNKRETKVLCISLEKDLHISVAEFLFQLNLIQKAGLEYLRAASRVDKNDK
EKQGLVSKALKAFDTDIAKNTAFIRAMLEKGKIEDLSMFTKEVNRTKFFS
DTQTLVNNFVPLPEPQAIEWPKVQQNQNEQLTNEQKETNKQNDIQPQKQE
EVLVQLQQTQQHQPPPLPPENSPLHTVENIQKPDYWYTEDDIKNILEANI
DKNKFSIVTHVDLAHPEQVRDALRERVHEDLIKNNKIVLMAINTGHGHWV
SMAISKDNNTNKVIFKYNDPLGRELNDRPDLIELITEVCSEVEIIDLQIL
QQDNTSDCGVFVCDDLIRQSQSLEILSTEQCGKQGLNLRKSQAETLKQSL
IAQQAQEQHVYINVDSNASDDEEDENNNGNNNEVARLPYGDNGEVDGLGI
ASQHNE
>RF_0447 NACHT domain
MQTSVLNPLITRLKTLYSSHNTLPKLIEDEKIKAQSLEEYYVKLQILLNE
DDEAGKAALRDKVAGDKKLVEPENIFKAIDTKEKIRGLLKKELPNKEYQI
DNIVELLNEEKNEKKKFGILRRNLPNKSESEIKNIAESISRIQADIGKVL
LLGSAGIGKTTLMHYLSYKWGKEELWNDKINYVFGIKLKELLSNWTVRYG
TNIDEDILSCFIHYCLDSKDIKLEEISNITNKDKVLLLLDGYDEVAFLSQ
NDRDYRDIMDSVFQYKNVIMTSRPNAVVEEMSNRFERKVENTGWDSEGIE
QYVNKNFEYDKELGVQLRSFLDTHSQIKEICEVPINTALICLVWSDKDIR
DKFQKNSDEDFNISQLYHEVVSWLNNRHLEKTQNKYKNKTEANNHLKNKM
SFLEQIAYESLVVTGKLVERKLVEDKKDTLDIDEVIEQGLLKREGINYQF
IHLTFQEFLAALRLKNQLLDNHTKSKTASFIGEHRNDPKYLMTLKFLAGI
VNNENNQELIEIFWEAVTCNVDSILELGIERKIILLMHLLAQSKINGKFD
NRIPNLTQIQNLIDDIVLKDIPIWEQHIIDSGYLSEVIVKTVNEKLQNKE
AVFQEFKTATEIITGLANSK
>RF_pd60 hypothetical protein
MSVGRKNWLFAGSDSGGHTASIIYSIIKTAKLNHINLWKYLQKVLAIIQD
YRANKVEDLLPWNILLD
>RF_0306 Transposition helper protein, OrfB
MNLQHQRIEELCHSLNLMQIAENYLDIAQSSSKEDSSYTDFLESILKTEL
LARQHRSKSILTKMAGFPAIKTLDDFDYDFATGIKHKVLEGLRSLSFVER
QENIILLGPSGVGKTHIAIALGYAATQCGIKTKFTTAADLMLILNAGLNQ
GNLDSIFKRVILPYKLLIIDEFGYLPLKPEQANLLFQVIAKRYEKGSIIL
TSNLPFGQWHNSLAQDSALTAAILDRLLHHSTILNIKGDSFRLKDKKKTG
LVPIEIINKQEDNFMT
>RF_p64 Transposase
MTYSMSWIILNEKLMAKAYSYDLRIRVIKSLTEGKTIKETSEIYSISRKT
IIEWKELKKQTGDVKAKSGYHTGHRRIIRDIEGFKKFIELNFDKTTMELA
NN
>RF_0343 Transposase
MVLGIHRFNKGMLDFAKHYSFRLKVCRPYRAQTKGKVERFNRYIRESFYN
PLVTKLKTSELVLDVDTANSEVLKWLRDTANLRVHRTTGAIPAERLKLER
NHLQPLPLDYSGSHPTVLEIMRDKGERFSTVSLQHSLCIYQSILEAL
>RF_0551 Putative lyase
MVKKIVQNTKTLHVRSNGRSADYITPNFIYGCAGGCRNSYCYVMRHNYET
LYINENIDQILDVLDKHIESLPIKVSNQTDSKYWTYDIGCSTDVSLHWKH
TNWLKIFNFFKEHPHAKATFATKYVNPKLLNFNPEGKIRIRFSLMPARIS
EILEPKTSPIIERIKAVNIFIKAGYEVHLNFSPIIAYEGWLTEYAKLFED
LDQYINNQYKPFIKAECIFLTHNDKQHERNIASNSLESEALIWQPNIQEN
KVSKYGGKAVRYKAGIKSNFIKRWSVLHDRLLPWNQIRYIF
>RF_0387 Transposase
MLTIESTNRQIRKIIKNKGVFPDDKSIQKIIFLALTNASKKWTMPIKNWA
MALNQFAILCDTNLQNWANGEVILTQTS
>RF_pd53 DNA polymerase III, epsilon subunit-like protein
MIRLKFLEEVDIIIAHNAAFDRPFFDKMFPEVITKVWGCSRVDIDWKAEK
IESHKLEYLTYKYNFFYEGHRAVIDCRAGLHLLAQTLPITKTLVLKQLLN
NCHKTRFNVWVHNAPYDSKDLLKSRGYRWSINPQANYKAWMIEVFEDTLE
TELTFLNSNVYKTPYNIPVQTINPCDRFMG
>RF_pd58 Transposase
MVGIDIAKRIFQIHGVDKNGNTVLKKKLMREQILTFMANLPKCLVGTEAC
GGASWAREITKLDHTVKLMAPQFVKPYVKTNKNDQADAEAICEAVADQI
>RF_p55 Transposase
MCKFLKGYIKENITKRGITMPQKQNAAMNQAIDLLINNDTDVSTLFKEDG
LLKELTKHLVEKALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFEPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLIVGLQMI
>RF_1054 Transposase
MNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGAVEIEVPRDRNSSFAPSL
VAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQELYGADVSESLISQITD
DIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQDKRIINKSVYVALGIDLE
GRKDILGLWISENEGAKFWLGNFTEMKNRGIQDILIACSDNLNGMSEAIG
AVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAGDLKPIYTLAQKKKHFPL
>RF_pd54 Transposase
MVVKVRQDKRIINKSVYVALGIDLEGRKDILGLWISENEEAKFWLGNFTE
MKNRGMQDILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSY
KDRKELAGDLKPIYTANTEKEALSALEAFESKWSKQYPQIAKSWYIHWDN
LMILGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRLFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFEERI
>RF_0041 unknown
MGLLKKNLTESSNILDSFYIKNEKYLTYKSSYLDAANSSSESTIDKFFLQ
KILSTTPTKFILAIKNIETKNSNSSLVKANLEKLVGIFEQFTKLLRYIDI
NESNLSIVVTDSPANNNNTRISKIIDDTIKLGNFSDEQKIIINKIKDSIY
LLPQASEQAKDYKDLLNITDDNYIIPDEYNKITIDGENLTYILNSINVID
KEILISINEFKTYIEKKWKQNIESNLSFEDISAKTDKLKQLIDIVNCYKQ
LENNAKTIGSFLETVKKLNQLLETPKLENKLENLLNYLKYLSDIKFSEKE
NLVTINSAKWFNDLFSNLGAYNIKEKLLESFKHTICKDKDSFYNKLNETI
EKFYEDIKNNDVLDLKAINNIYNLKNFLQHINNSSPDIENLDNIKLFLTK
SFKNFNNVLGITINNSISNLEKLIGSVSKQEAKSLWKYITASKSITEISR
NLDEVIYDKLLHKPVLPDQELPIYNLLEKLLKETHKSINDCYKNENLYKH
QLAEIYCGQAQIYTANGSTKLSKESIELYENAANLGSEEANIKLGKIEFK
SGNYVKALEYFKTTTHISYAKEAFNKLLHLKESELKKKIQQKNPQDIAKL
TSEIIELYSSQGDFYNQYNLDISEKSLQDSLKVFFLNTIALIEEQGRPKP
YGILYDLSKELASMISSPCIQLKFIQQAEKYKNLAEKFKEEKLETDYTNI
TTSRSHDSYFKEPLLKFNDIIPNTSFKTYYDNNEDSSNMLGACYNSSEYP
Q
>RF_0359 Site-specific recombinases
MQKRKIAAKTIIISRVSTKRQQQSGYSLTVQTLDSKEYCTDNNLDILKIY
EFAESATTGKRKKFMEAINFAASQKEIVAVVADKIARLQRSFNELEMLEK
FINDEKIELHFCLDKVVIHKYSMSHERMKWNAGIIAAKYCADYARDNMNC
SIKHKLHHGEWISIPPVGYLHNANTTKKGRDRIFIDPNRAPLIKRIFELY
AKGIYTLPEILEKTKEWGLTNLRGNKGYLCTTYLLQIIQNPFYYGVMYYK
KGDKYYPHLYEPIISKELFDKCAIVLKEGNKFKESNKDYIFRGLIKCANT
GKVATSDTKQKTYANGNVGVWNYLRIWDVDNPKKSIYIPEKKVLDDIESV
LISMQLEPKFLEKVINYIKNSIDIEQEYYKKRKQELEVESAEFKMRIDRI
KDLFSDNTFSREEYEWKLLEYTQKYQEIKNEIEMCNKADDSTKLISLVKI
ASSAYQTFIDLIAEEKRKLINLIFFDLKHDAEKLHYKLRPPFGNFIDLSK
RKWKDIMYDLLTTTNHRTQINDTFFYI
>RF_1204 Transposase
MCKFLKGCIKENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_p15 unknown
MFKIARTVKQIYNAARNIPKSFLSSINNGLKYCSQSKGYVEDASEEFSFL
KAPRDQLSKDLIQDKFKAFKPNLQNLENLKSTQLLDSAEIRKLIYARFAD
EIAAKPSDTEENQNLETKSHATRGHVETFTTYNIADEFNDLREQGYNFKE
LRSAIINHNSSQQSENIEERNTSDNRSGKSLSQRMKELVVSGHISSYSGE
SGLKEEVEKVMHQKALVIEEFMQKVNERLGFVSVDNSVLLVDSENDEAGT
DATKTDLLGEY
>RF_1072 Transposase
MNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGAVEIEVPRDRNSSFAPSL
VAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQELYGADVSESLISQITD
DIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQDKWIINKSVYVALGIDLE
GRKDILGLWISENEGVKFWLGNFTEMKNRGIQDILIACSDNLNGMSEAIG
AVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAGDLKPIYTLAQKKKHFPL
>RF_0102 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKAYIWQ
LIT
>RF_0050 Transposition helper protein, OrfB
MNLQHQRIEELCHSLNLMQIAENYLDIAQSSSKEDSSYTDFLESILKTEL
LARQHRSKSILTKMAGFPAIKTLDDFDYDFATGIKHKVLEGLRSLSFVER
QENIILLGPSGVGKTHIAIALGYAATQCGIKTKFTTAADLMLILNAGLNQ
GNLDSIFKRVILPYKLLIIDEFGYLPLKPEQANLLFQVIAKRYEKGSIIL
TSNLPFGQWHNSLAQDSALTAAILDRLLHHSTILNIKGDSFRLKDKKKTG
LVPIEIINKQEDNFMT
>RF_p58 Transposase
MVGIDIAKRIFQIHGVDKNGNTVLKKKLMREQILTFMANLPKCLVGTEAC
GGASWAREITKLDHTVKLMAPQFVKPYVKTNKNDQADAEAICEAVADQI
>RF_0999 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKITKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNKAMAHFLIKFDERI
>RF_0921 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNTVFKSLYLA
IDYMTKKWSMPIPNWNKAMAHFLIKFDERI
>RF_0804 unknown
MSILVELKKLATSSYNYCGTHVLSIRCVSRLVDSLLFFKLNFVYQLFIYF
LILVSAVKVNADFNNIQDNFEYQEEQLTIELPWSDCTEIHKLLEEKLSFS
EQQIKKENKIHEKYKQFYLKHNNSTNFSMQFLEKKSETNGVETLISGFLK
FCEDNFQTSKSKSNSLNYYIKKQQDQWFNDIRNENYKIYYRKKYEDNIFR
NN
>RF_p54 Transposase
MVVKVRQDKRIINKSVYVALGIDLEGRKDILGLWISENEEAKFWLGNFTE
MKNRGMQDILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSY
KDRKELAGDLKPIYTANTEKEALSALEAFESKWSKQYPQIAKSWYIHWDN
LMILGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRLFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFEERI
>RF_0199 unknown
MRTIGEALEELHKNLKNSAEIITADFNKKCHKVADKLSVKINDLEKYTKD
SKDHLLETIKEQYKSLTKELQDYQKIKDDKVEEYRQTLVKNLMI
>RF_0435 Transposase
MIILEQIMEIKILNKHGKSLRSIAREVGVSVNTVRKYLKYDGSPKYKDRS
ELVTKLAPYKDYLSERIKSAHPVSLPGTVLFQEIKELGYTGGITQLRDYL
RSIKPVAKQEDIIRFETASGKQMQVDWIEFRKGKDPLSAFVATLGFSRAS
YVEFVNNEKLITLIECHKRAFDYFGGVPEEVLYDNMKTVILDRDTYGPWD
TPF
>RF_pd63 unknown
MGGSNAADRVNWSQLQFQWRDAIIWPDNDQPGFKAAEVIKDKINKANEHI
GFVSVVDPRRLQFGGSTHKDLLPEKWDQEKSSHYIKYLEATGKGGVAHDY
LKYDSIMYQDILTSLAMRDERLSKSIKELSDSNNTSDIETIEHRTKLIDD
TQNLYEKKALEYSGIAGTNVVYRGHLELMVKNYGESHEKVT
>RF_pd55 Transposase
MCKFLKGYIKENITKRGITMPQKQNAAMNQAIDLLINNDTDVSTLFKEDG
LLKELTKHLVEKALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFEPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLIVGLQMI
>RF_0321 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMSIPNWNKAMAHFLIKFDERI
>RF_1393 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0138 Site-specific DNA methylase
MYKFIDLFCGIGGFRKALEAKGLECVFSSDIDKDVQEAYKRNFGDKPYGD
ITEISENKIPKHDILCAGFPCQSFSISGKRLGIDDINGRLFYEIIRISQT
IYIIT
>RF_0838 unknown
MTETTAKIMKKILKIILFITIFIILAYSGLWFTIMFSLSHSINQKYAGTN
LNIEETDNNPNQQYLIKFSKVQPYGFPFKLGISVINWQEESINRVIEFTT
PINIGYDLLKQKLFINFSGEAFGKFKPVQRGFGVRFYNENCILSTKIPLN
FKLFEIVRSKKDLFEIINLIENIKFTSGKTEIFDLVDNQKLYEEDHTILT
MLFDKSKYYISKQDFLDNIPQKLEIYYETEIVKSNLEDRIIPAGLLLYRP
AWNNNFKFSGNFLISTSSLHFKDIAKDLTIEVTNAKINSNNFENNINLLY
KGKLNDFGNNNIDLLIDSQFKLKPGFIIGSLEFIKKYYDRQTYLFKLSDN
NLYKDFNNELSYILNNNKQYNFSIFEDRQYNFNLNINLVTELNKLTRAQI
NALSLYSNASGFNITNETIVNTLKDSYSKGTIVINDYSKIIDVLSLYVYG
VGDFKNLSKESKEVYGDALKSFLKTISDHPNSSNLIDASIEYEFDLSDLN
KAKIGNIDDINKLIPLYYLSLYQAAVKKVKPGENVKEKIMELIPSVNQKI
LEECIVDEPR
>RF_0855 unknown
MIKDKKSVIKGWNFLKPKGGGANEAGEHGGVYQSSDGKITAMIKKEASSS
KNIAEFLGSQIFEAISPGNGAKVNLIAPDDFNKSKAVDSQIYVKSEFFEN
YSSDMYVDMDKHMSAKTKPSSWFRKDGGRPLFMGARNKLFRTLENAFKEI
KYQNFENIMPASLLIGDFDIHVGNIGVIRDQKNPKTLPKLVRIDFAGSFD
NLTNNIYPHSRAKHLPGFGPTNHFREFPSNLRTKNPNFADSLLAVSKIDL
SKTIDKSFDELTKYYSNEAIAEFAKQAMPKKFNNKKSKEIMPEEIKASLI
DTMKKRQESLKEYGLEIKVNSLISKKYSFPYYEVKEQGLKTLMKEYPDYF
EKILNYEERKKGGQKLKLRNKITTSFARILEILGIRDSAKKHLIKTIKSL
NEDIKDERNLADSSDKIKKEPKQKSAKTNIDANREYVDALEKFKKEVGTD
DIVSVTPSQLGLAKKARKLDEDIKDERNLADSSDKIKKEPKQKSVKTNID
TNREYVDALEKFKKEVGTDDIVSVTPRQLGLGRKTKQKDQDLLKLDEEDL
KHIKNLKEKVMKPTKITSASVVNKKSTPAKTR
>RF_0390 Transposase
MIILEQIMEIKILNKHGKSLRSIAREVGVSVNTVRKYLKYDGSPKYKDRS
ELVTKLAPYKDYLSERIKSAHPVSLPGTVLFQEIKELGYTGGITQLRDYL
RSIKPVAKQEDIIRFETASGKQMQVDWIEFRKGKDPLSAFVATLGFSRAS
YIEFVNNEKLITLIECHKRAFDYFGGVPEEVLYDNMKTVILDRDTYGPWD
TPF
>RF_1140 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNKAMAHFLIKFDERI
>RF_0881 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_1392 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_0308 Transposase
MIILEQIMEIKILNKHGKSLRSIAREVGVSVNTVRKYLKYDGSPKYKDRS
ELVTKLAPYKDYLSERIKSAHPVSLPGTVLFQEIKELGYTGGITQLRDYL
RSIKPVAKQEDIIRFETASGKQMQVDWIEFRKGKDPLSAFVATLGFSRAS
YIEFVNNEKLITLIECHKRAFDYFGGVPEEVLYDNMKTVILDRDTYGPWD
TPF
>RF_0341 Integrase-like protein
MNITILLYMAWGDIDLQNKIWNISNIKKEKSRYLSLTDEAIQILYRRKQK
SNSLWVFPAKNKINHMVKPTPTLRKIVKETGYKDLTFNNLSKTLEKLTDP
LRASIKL
>RF_p53 DNA polymerase III, epsilon subunit-like protein
MIRLKFLEEVDIIIAHNAAFDRPFFDKMFPEVITKVWGCSRVDIDWKAEK
IESHKLEYLTYKYNFFYEGHRAVIDCRAGLHLLAQTLPITKTLVLKQLLN
NCHKTRFNVWVHNAPYDSKDLLKSRGYRWSINPQANYKAWMIEVFEDTLE
TELTFLNSNVYKTPYNIPVQTINPCDRFMG
>RF_1342 unknown
MSALTVRLPDDLAEEVAKRAKKLHISRSQYIRRSIETMNKSLYEQERKEK
LFAISMRTRKESMKINSEFSNIEHDPKN
>RF_pd39 Conjugative transfer protein TraA_Ti
MERSRSKRKRADSRTASEIEFSLPREVSKELNISLVEKYVNEYIVARGVV
CDVNIHYDNPDNPHVHIQYLTRKLERLENGEVVLGKTKNRELESTKFLYF
LRDRCEIEINKVYEEAGLPYRVTAKSFETLGIDQIPKLHIGPAHHMPATE
LEAKNKEIIAENAKKIYESPEIVFGRISYTKPVFTKEDIAIALSDALMVH
LVSKGSDIAKEQEAIRAFGKGLVNEQAGDGNTEQNIVNDAVGTAAGGGAE
NTDSSQVKETTNNPAIEHLNKEYGEEFLRLYNQLLVSDKIELMDQKDLMG
RTLYSLKSRVNLERRYVSAIEELNTKGEHKLNILDNTIGERNSLKEQIGD
LVNVVGANLQNKFNDKLGSGLGLKLNVFGSKKHAFSDEQIKAILSVCSGS
DISVLEGNPGAGKTFVMKEIVRQYKAAGFKVVGTGPSSVSAKVLSRNAGI
KADNTSLLRKKIVESKGGDFKIDLSSKYYEEEEYLKSIGCDSILNFLRSD
VLDSKTVLIVDEASMIELANMDYLAHEVLRSKAKLVLVGDNNQFTAVGMT
GAFNKARKIAGGVKLTEVRRQERVEYRQATRAMGRFAMQEAIEIYRKLDV
FNIKDNEQEAKTSLVTSFAKEYTEQIDNLKRDDLIAIRSIAIGAYTNEKV
ADNTRVRSELKHSGALKGTEVQISSGGRMLSLMKGDRIVFEENSLRYGIS
NGEVGTILSVKPSVKSFSGGASSKGESDGDGLLKILVHKADGSKDIINID
TASDAANNKWRIKLNHGYALTGYKLQGETVDRMHVYFDRSIGYEAFLVLM
SRHREEVKLHASAEELENIVYQRLDSDVEKVRNQFKINSYEMRDETRINS
AGEEYTVQVKEEIPNWLIGLTLAVSRRANNSFAIDYGKGGTLEGSQLIIK
EYLEARG
>RF_0931 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKITKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNKAMAHFLIKFDERI
>RF_1375 unknown
MQQFSIYQTSDELLLKSILLLIEKCYRSDLKSVILTADADQQEMLNKNLW
TYSRKQFIPHGSKLDPQPEKQPIYITDELQNPNNASVLVIISPTDIGKIL
QAKEYIRVFKRIIIITDLPEDLKELTAKINKFTEQENKIDCFTQNLRGTW
NKVE
>RF_0574 unknown
MENANELMSDNDPNFVCRTPNNKIFQGILLLEAKRSGMKAKFNDKGELQS
LDVKDITQEILDHYRILQEKFYPKRNSKDLVDSRIAQSINFLLYAPLFRE
SEIYEKIYKKSPEEALKIEGGIAAPNGKYVKQLVDAKIGTNIHFNTKENL
ENKANEGKEIKISSIIEKAITTLEKDKKVSIEDKRREEIKRHLSKSLEGA
SDYILTFKKNDLVDIIHQELDKRQTWWSKIVNYISIKSYSISKENLEKIG
KIINSEIKNSHTPLKVEVQEQFK
>RF_0998 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0587 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMSIPNWNKAMAHFLIKFDERI
>RF_p66 Site-specific recombinases
MAKVGYARVSSLGQLLSIQLDKLKDCDKIFQEKKSGLDGTRSALKNALDY
VREGDIFIVTKLDRLARSTAHLCKIAEILNQKSVALKVLDQNIDTKDATG
RLIFNVLGAIGQFETEIRAERQIDGILKAKERGIQFGKKQYLTKQQLNDL
KEKRKQGIKIKNLMQEFNLSKASIYRYLAQEV
>RF_0174 ATP-dependent helicase
MSNLQQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPANILCLT
FTNAASIEMQARINSRLKHLSLCDTKKLEEELFLMSGNKPLPQEIENAKT
LYDKILNSNEPLNIYTIHAFCQKILKTFPLEAGITPEFKILEETKLQDIF
LNIRNEIYLSDEHNDLIKILLNRFHEITLQDIFTEIIEQKIKFKKLFTHK
TIPKEISNKRLALGELNNIYDKVKNLFAEYDLEIEPKEIFFTKDGKKRKS
FLSKELIRKYLKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKLAHII
LKKYDFYKEENNLLDYDDLIYYTEKLLNNKTTHEWLLHKLESEINHILVD
EAQDTSPQQWNIITTLITEFNAANKPNNSTFIVGDDKQSIFSFQGADLHN
FSLVNEQLKTNLTNANKKFKNITLEYSYRSCAEILQFTHNVLKNIKSNYP
SLFLSDNPLISSFRTHQGFITVWPLVTSEKQEELFWALPEDYENSKSAAD
LLIEKIVNFIQEQIESKEILPSTASRISEKDFMILVRKRDEFSNNLIKEL
SKAKLKVEISDRINLKENLTIMDLISVAKFVLLSDDDLNLAGLLKSPIIG
MNEKQLYELLVNKTDNSLWDNLSACEEIYAKLNSLIVIYKISTVENFFDL
VVNNLNLREIYDDDMINELLTLSKNYTNDIDNSLQGFIAWFENNDIYIKR
DMEHSDKIRVMTVHGSKGLEAPIVILCDSTTLPVSSNKFIWDDKGEMFFS
ANIVDTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGFSNKAA
APENCWYEIVKQTFN
>RF_p39 Conjugative transfer protein TraA_Ti
MERSRSKRKRADSRTASEIEFSLPREVSKELNISLVEKYVNEYIVARGVV
CDVNIHYDNPDNPHVHIQYLTRKLERLENGEVVLGKTKNRELESTKFLYF
LRDRCEIEINKVYEEAGLPYRVTAKSFETLGIDQIPKLHIGPAHHMPATE
LEAKNKEIIAENAKKIYESPEIVFGRISYTKPVFTKEDIAIALSDALMVH
LVSKGSDIAKEQEAIRAFGKGLVNEQAGDGNTEQNIVNDAVGTAAGGGAE
NTDSSQVKETTNNPAIEHLNKEYGEEFLRLYNQLLVSDKIELMDQKDLMG
RTLYSLKSRVNLERRYVSAIEELNTKGEHKLNILDNTIGERNSLKEQIGD
LVNVVGANLQNKFNDKLGSGLGLKLNVFGSKKHAFSDEQIKAILSVCSGS
DISVLEGNPGAGKTFVMKEIVRQYKAAGFKVVGTGPSSVSAKVLSRNAGI
KADNTSLLRKKIVESKGGDFKIDLSSKYYEEEEYLKSIGCDSILNFLRSD
VLDSKTVLIVDEASMIELANMDYLAHEVLRSKAKLVLVGDNNQFTAVGMT
GAFNKARKIAGGVKLTEVRRQERVEYRQATRAMGRFAMQEAIEIYRKLDV
FNIKDNEQEAKTSLVTSFAKEYTEQIDNLKRDDLIAIRSIAIGAYTNEKV
ADNTRVRSELKHSGALKGTEVQISSGGRMLSLMKGDRIVFEENSLRYGIS
NGEVGTILSVKPSVKSFSGGASSKGESDGDGLLKILVHKADGSKDIINID
TASDAANNKWRIKLNHGYALTGYKLQGETVDRMHVYFDRSIGYEAFLVLM
SRHREEVKLHASAEELENIVYQRLDSDVEKVRNQFKINSYEMRDETRINS
AGEEYTVQVKEEIPNWLIGLTLAVSRRANNSFAIDYGKGGTLEGSQLIIK
EYLEARG
>RF_p30 Transposase
MNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGAVEIEVPRDRNSSFAPSL
VAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQELYGADVSESLISQITD
DIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQDKRIINKSVYVALGIDLE
GRKDILGLWISENEGAKFWLGNFTEMKNRGIQDILIACSDNLNGMSEAIG
AVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAGDLKPIYTLAQKKKHFPL
>RF_1058 Excinuclease ABC, C subunit, N-terminal
MYWVYILCSDRNGTLYIGITNNILRRTYEHKQKIIKGFTAKYNIIKLVYT
EEFTDIKEALAREKALKKWNRAWKIKLIEKINLRWEDLGKCISGFPPTRE
>RF_0688 unknown
MAKELIPDRPQEKLKTAFEYQVDSAAGIIRKLEEKVTLALKEPSLIKRQD
LHLQAVGAAITLYSPEVANQYLNDTEIQKLSDLLKENKKYTTNLLPKEKD
IYEKLVAKNEAIIKGFPISFDGVADHITVKVQAKAYKNAVESALIEMSVG
DEQIPRKKYGEELLKRVKEKLDKPFYDEVTKETVEISEETISEAEKLIKK
ANKNIDLQQITLTSDQVEVQNAFKSTIDKLCKFLEKNIETNKNIKQGIDI
IQGAGVNESEIINSLLPAISKLPPEKMTEQGREIIKNFAPLLESNNPALV
NGTKKILSELNPGYLTEHGWGESIALELQRVGKPKLWQRIVAVFTGTDYA
QKNIDKAVANFEKSNSSYTDMKNLSEELQREKQAPNKEINIITAKKEQGK
EQNKTISQSYKSSISTPISHVDKLNKSKESGQQSGHSK
>RF_1211 unknown
MDNEILKRLMEEVEHKLDELLHAQANNQNEVKKLQNENKELKDNYIKMLD
QINIYINELEEIKKQQK
>RF_0400 DnaA-like protein
MQQYIFRFITSNKYHPDEFIVSSSNEQAYNIIKNWQCNFGVNPYKFTLLI
KGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIENIENWQE
PALLHIFNIINEKQKYLLLTSSNKSRNFTLPDLSSRIKSVLSIALNSPDD
ELIKILIFKHFSISSVTISGQIIDFLLVNLPREYSKIIEILENINYFALI
SKRKITTSLVKEVLNKYNHKIL
>RF_0049 Transposase
MCKFLKGCIKENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYVSYKDRKKLAGDLKPIYTVNTGRKMIQIFNKHRLKNDTVS
>RF_0535 Conserved hypothetical protein
MIIKNLQEFYPLLIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEI
NKKIVITSLLSIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAKS
INLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDDAVAASMILETVLDS
MKKL
>RF_1181 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_pd67 Transposase
MDYSYNFISLEASNVLRDWLLEFSFIYEITKNRYCANYGRPSIDPVLFFR
MQIISYLIW
>RF_p60 hypothetical protein
MSVGRKNWLFAGSDSGGHTASIIYSIIKTAKLNHINLWKYLQKVLAIIQD
YRANKVEDLLPWNILLD
>RF_p67 Transposase
MDYSYNFISLEASNVLRDWLLEFSFIYEITKNRYCANYGRPSIDPVLFFR
MQIISYLIW
>RF_0967 Transposase
MPYRISLKHLRHFKGFCSSPEIIMLFVYMKCRFSLSYRELEEIASIRGAK
IDHATLQRWLIKFSPWHRQVK
>RF_p31 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_1205 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNKAMAHFLIKFDERI
>RF_0103 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLWSLPD
>RF_1340 Uracil-DNA glycosylase, family 4
MNNTLKWLSAIGVEYYCLEHPPKLKVCNNTELTEKPQVKLMSTKETAFNM
NDKVHDNITLARSLADKANNIEELKESLLNFNGCELKKFATNTVFGDGNL
EAKIMLIGEAPGSTEDLKGIPFCGESGNLLDNMLYAIGISRKNNAYITNT
VFWRPPANRQPTLEEVDICRPFVEKHIALINPKLIILVGSTAATSLLGKN
SGITKIRQEYYFYTNKYLSAPIQTTAIFHPAYLLRQPMQKRTSWYDLLKI
KEYLVNTGLLIS
>RF_p48 Transposase
MDMAIEYPAYGQLRVSNELKKSGILVSPGEVRSIWLRNDLNNISKRLKAL
EAKMAQDGIVLTEAQLQVLEKRRNEKEAHGEIETQHPGYLGCQDTCYVGN
FKGIGKVYSQVFIDSYTRVVDAKLYADKTAITAADMLNDRVLPWYETQGI
PMLRILTDRGSEYKGNIEHHAFELFLSIEGIEHTTTKAYSPQTNGMCERF
NKTMKQEFFDTAMRKKIYTDLDDLQLDLDIWLEHFNNERLHSGKYCYGKT
PMQTFQDSKKLAIEKNNEILYLEYSSDSQNLTDNQVQNL
>RF_0307 Transposase
MVLGIHRFNKGMLDFAKHYSFRLKVCRPYRAQTKGKVERFNRYIRESFYN
PLVTKLKTSELVLDVDTANSEVLKWLRDTANLRVHRTTGAIPAERLKLER
NHLQPLPLDYSGSHPTVLEIMRDKGERFSTVSLQHSLCIYQSILEAL
>RF_1182 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0392 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAEFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0588 Transposase
MCKFLKGCIKENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0926 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKITKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMSIPNWNKAMAHFLIKFDERI
>RF_0880 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_0389 Transposase
MVLGIHRFNKGMLDFAKHYSFRLKVCRPYRAQTKGKVERFNRYIRESFYN
PLVTKLKTSELVLDVDTANSEVLKWLRDTANLRVHRTTGAIPAERLKLER
NHLQPLPLDYSGSHPTVLEIMRDKGERFSTVSLQHSLCIYQSILEAL
>RF_0927 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0106 Transposase
MCKFLKGCIKENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0992 unknown
MTDILDEVLSDQNEEKRLIFFKKLLPIIIIISIIAITIMVVINNNKDKRV
KNNQKNGDILVKTVGLEATKDNEELAFNTLENLVTTSNTKIKEIAALEQV
AIKISEKKYSEAKDLLNKIIENKEYSEISTSYARISWCGLVIDDQNLDIQ
DKEKLTKYLNYFDDEKKPFWATATIIKAMWDIKNNMKPQAEKNLKNLLIS
NNVSDLIKDQAKALLVNLNK
>RF_0264 ATP-dependent RNA helicase RhlE
MIHLLKIKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPK
QFMQLKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMK
EQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPIRITVGATNKAA
AEIKQESMHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYE
NHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVI
NYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRLVNKGE
TTPRSEFRSDKNNRKRSFGKRVGGEGKKFNSFDNNRKKTFDGNSYGNKRK
KVS
>RF_0165 Superfamily I DNA and RNA helicase
MKDAPFEKLDKKELGKELEINLNEYEVVVHWHVYLGYLKWSAAEIDLLKK
TQNINELDQEFLNDYNNKNYQEQPTITPIAGLTIDENGKYVEHSMIISTA
AYALGKIMKEDFQGKELKDLANFVDNNNILIDEVFAESEKIYFMDKPQDS
ALGRILDLEMINIMIDLLVQKLEIDRKYLFSRSEICVRRVTSQKKKKDKS
VIFTPPSLEMFNSFFLIPLDLVRNNIEKFEPESAIAKYLGKEDKPDSIDV
LERQEALQKLLAPLEMQPARWCSSPKNSLAALQAAAVNEVLSPTSEKLFA
VNGPPGTGKTTILFDIMANIYVGRALNLISLEEPKNGFQKGKISHSTPDF
DYHISSLKPELQNYGMVVASSNNNAVENISNEISLYSKIDELYHEDLSYF
KQLVCVEDKEKNWGMFATPLGNLKNKKKFINSFWKFKDDEKGNDEDYTML
QYLNLLIGNKCKDRAPGHYKPKYCNSSEELNKAWSEACTNFKKIHSKINK
IYNNISSVIELNKERRNILEKNNIVNKHNIKDYEEEKAHLESILIHARNE
IMINTTKINDYNLNYFKVFYKLFKTEKYLAYSNLLQQQEEKVNYEKAIIT
KINNFKRLIDISKLLSEPYKFLEDENFNIKDFEENLFWKNWQENSEDLNK
ITPYFNPKFEILRSALFVSAVKLHEIFINANADSFWHSLKYFFDITINSL
GKPEMNKIAWQNFFMIIPVVSTTFHSFDRMFATAKHNEVPWLFIDEAGQI
PPQFAASAIYKSKKVVVVGDPLQTEPISILKQDLIKKLCENFKVSYRDWS
PSEVSLQNLADRTSLYQTKIDDVTVGFPLLVHRRCQNPMFKICNKIAYGN
KMIFATSKCKSNIRAILGASKWIDVEENNVQRYKYESETEFQKLLELLKQ
VLKEKNGDDLLKQIYIITMYKGYSEFIRKKLKGIFDNSRFDKAIKEFGYK
NIGTIHAFQGKEADTVIMVLGAQHPLDKGARNVMTDKPNVLNVGISRAKN
NLYVIGNLEIWLKHKYMPEIYNMLGDKE
>RF_1350 unknown
MNNAIVLYNINTNLFKKDIVNNFVNNLTKSTCSTIANMLAIDYTLRLNSK
PEAEKYINKCIFRLKNYLGMRVINDDNFSVALELFAIMITSEDENEQNKN
NILEQSQDIIAENLVEVYFGDEKINSTEKEKIKNIFKTLLKEKNFDKIIN
YAESHKKLFKASVMYAMKKYNNIDEATIYIKKEFNKILEMSLAFTQKSNI
FKQATGKIAGAVCALLVGAISVATAGAAFSIIVVPASIFAVRYAPELGEK
IGGLILNNDNAIKLEQSNIDKFMKTLQNDKESLLSQEKTKNIKQNIKVSP
SQINAKLTKKVVNEKHR
>RF_0320 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_0137 Site-specific DNA methylase
MLNASLFGVPQARERVYFVCLRKDFSSEYILKYVKPKESYERIFLGDILE
KEVDKSLYINRDDIVLDKTPVEKQLKPIRIGQVNKGGQGERIYSPFGHSI
TLSAFGGGVGARTGLYYINDKIRRLSINECKYLMGFPQDHYVADGLKGYR
QLGNSVIPQIIANIYDSIIAV
>RF_0263 ATP-dependent RNA helicase RhlE
MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMTGSDILASSQTG
SGKTLAYLLPLIDSFIKNKNYCFNSCSD
>RF_0344 Transposition helper protein, OrfB
MNLQHQRIEELCHSLNLMQIAENYLDIAQSSSKEDSSYTDFLESILKTEL
LARQHRSKSILTKMAGFPAIKTLDDFDYDFATGIKHKVLEGLRSLSFVER
QENIILLGPSGVGKTHIAIALGYAATQCGIKTKFTTAADLMLILNAGLNQ
GNLDSIFKRVILPYKLLIIDEFGYLPLKPEQANLLFQVIAKRYEKGSIIL
TSNLPFGQWHNSLAQDSALTAAILDRLLHHSTILNIKGDSFRLKDKKKTG
LVPIEIINKQEDNFMT
>RF_pd66 Site-specific recombinases
MAKVGYARVSSLGQLLSIQLDKLKDCDKIFQEKKSGLDGTRSALKNALDY
VREGDIFIVTKLDRLARSTAHLCKIAEILNQKSVALKVLDQNIDTKDATG
RLIFNVLGAIGQFETEIRAERQIDGILKAKERGIQFGKKQYLTKQQLNDL
KEKRKQGIKIKNLMQEFNLSKASIYRYLAQEV
>RF_0976 Transposase
MVLGIHRFNKGMLDFAKHYSFRLKVCRPYRAQTKGKVERFNRYIRESFYN
PLVTKLKTSELVLDVDTANSEVLKWLRDTANLRVHRTTGAIPAERLKLER
NHLQPLPLDYSGSHPTVLEIMRDKGERFSTVSLQHSLCIYQSILEAL
>RF_0930 Transposase
MCKFLKGCIKENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_pd64 Transposase
MTYSMSWIILNEKLMAKAYSYDLRIRVIKSLTEGKTIKETSEIYSISRKT
IIEWKELKKQTGDVKAKSGYHTGHRRIIRDIEGFKKFIELNFDKTTMELA
NN
>RF_0158 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_pd48 Transposase
MDMAIEYPAYGQLRVSNELKKSGILVSPGEVRSIWLRNDLNNISKRLKAL
EAKMAQDGIVLTEAQLQVLEKRRNEKEAHGEIETQHPGYLGCQDTCYVGN
FKGIGKVYSQVFIDSYTRVVDAKLYADKTAITAADMLNDRVLPWYETQGI
PMLRILTDRGSEYKGNIEHHAFELFLSIEGIEHTTTKAYSPQTNGMCERF
NKTMKQEFFDTAMRKKIYTDLDDLQLDLDIWLEHFNNERLHSGKYCYGKT
PMQTFQDSKKLAIEKNNEILYLEYSSDSQNLTDNQVQNL
>RF_1352 unknown
MIKINLFMKNIFDSIKLRFVNFVTKLKIFSFKRKKIAVLLGNKGVFLSIF
LDNKLLDKLFIPTQEQIDLNPYKNFFSKFPKSDIYFLLDGSECKTRHDQI
PILQSIVKIDPIEQFIEGYFNKEDIIAHCVYEITTTPSEIWSTLIMSCPF
ETPLSDIISCIIDKRSLDLKGIYFLTLELKVIINKIVQNIENDKYNDYFQ
ICVYVSQASGIKFIIKHKNNIITIRNLEYPFGKTTGYVQGIIEQEINDCF
ILFKNYISNLDQRACIILIVDEELKSLLESTNFEDRPVIFIPVDNILNKQ
TLEKERFIDTNISRLFLEYKSFPAYNNNLKSIKKLVTIKDLTFKLYSALL
IILILVVGIIKYNTKQNYKDINSINEKYYATNQEYDSIKYKYPYIKNTTS
LADLYVIEKLLEAPVPLPFDLLNRLIIALNPAFKLEEIKWELTNIDNILL
VSKRQLIIKLILKYHTNNLSVDESLKMLDDHMQNVKNKLSNLQIDYVIYK
DKILDIFGKVVIPLSVNIVDDKT
>RF_0105 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_0597 Alkylated DNA repair protein
MSQLSLFNDQIIISGLKYIEEYITAEQEDRLIKLIDSSPWITDLKRRVQH
YGYKYDYKSRSIEQSYYLGLLPKWLQIVADEFYKKNIFNEIPNQVIVNEY
MPGQGIASHIDCIPCFSDTICSLSLGGSCIMELTNDKTKHAILLKPRSLL
VFKNEARYKWQHGIAARKSDNKIIRNRRISLTFRKAIL
>RF_1351 unknown
MFEKYIMYLKNLIFFQFIIYFFFISLTIWIIKNFQQEYSKSILDKQVSQE
NLTEEVLKLYSVINSKEEILESYKKYVDLSVPSNVSCLNYQELIPKIKSL
SNKYDLVEPIDVSINSVFFKNNVQAIEGGEGESIHVNNYSINIKYACADF
LTFLKIFSEIYSYMPPNTLISFVRVRNEEVLTPKNIYKLSVNHASNLIYA
KLILYIRELASK
>RF_1053 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_0914 unknown
MVVTWYFIKNNQLDTTFEIAKLLLNDKHNLMHKAIGWMLREAGKKDEKKL
IDFLDRYISQMPRTAVRYAIEKFPKEIRKNILQKK
>RF_0915 Methylated-DNA--protein-cysteinemethyltransferase
MFNEIQRQEYYQALINKDDRYENIFFVAVKTTGVFCRPTCAARKPKFENC
EFYKTAKEALHASYRPCQRCKPLSHPYEASDLVRTLVDAVELEPAKRWKD
SDFDKLSVDASTARRQFKKRFGMTFVEYARARRMGIAMKQIRMGESVINT
QIDMGYESSSGFRDAFSKIMGGPPTKLNKHLNILKAAWLDTTLGAMIAIS
DEKLLYLLEFVDRRGLELEIERLRIKTKSAIIPGSTKPILMIEEELKLYF
NGTLQKFNTPIYLLGSPFQKMVWQELINIPYGETQSYLNQAKALGKPTSY
RAVANANGMNQLAIIVPCHRIINSNGELGGYGGGLHRKKWLIEHERKFTT
N
>RF_0388 Transposition helper protein, OrfB
MNLQHQRIEELCHSLNLMQIAENYLDIAQSSSKEDSSYTDFLESILKTEL
LARQHRSKSILTKMAGFPAIKTLDDFDYDFATGIKHKVLEGLRSLSFVER
QENIILLGPSGVGKTHIAIALGYAATQCGIKTKFTTAADLMLILNAGLNQ
GNLDSIFKRVILPYKLLIIDEFGYLPLKPEQANLLFQVIAKRYEKGSIIL
TSNLPFGQWHNSLAQDSALTAAILDRLLHHSTILNIKGDSFRLKDKKKTG
LVPIEIINKQEDNFMT
>RF_0946 Excinuclease ABC, C subunit, N-terminal
MYWVYILCSNKHGTLYIGIIRRAYEHKQKIIKGFTSKYNIVKLVYTEEFT
DIQEALTREKNLKRWKRSWKIELIEKANPEWKDLIE
>RF_0978 unknown
MRKQPLYFNFTKNNLLKIEPPREKRTLYKDTKEKGLVLIVSYGGSKTFYL
AQMVKDEYKRIKLGRFPDLPVEEARLMSTPVEK
>RF_0865 N6-adenine-specific methylase
MLKIISGKYRNQIIPTAKNIKYRPSTGKLKEAIFSILTSGEFTGNKLFNE
NTHILDLFAGSGSLAFESLSRGAGFATLIDIDTSSLKIAEGFAKSLNIEN
NVNLVNINALNLPKANESFDLVFIDPPYHKDIVTKVMKLLIKNNWLRDGT
IIVIEMAKTDNYVLDENIEILCEKLYGKSKLLVLRFTVIPAKAGIQ
>RF_0393 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMSIPNWNKAMAHFLIKFDERI
>RF_0065 Transposase
MCKFLKGCIEENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQIIDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFKSLYLAIDYMTKKWSMPIPNWNKAMAHFLI
KFDERI
>RF_p19 unknown
MTLLALIMVNYIIKTFVLKDSIIENIDYIDGKKKFLENELCSFPSESYNN
SFKSSIKAKPSCSNTTSESAARTIKDISEYKELRHFYPLSEKDIDTLNFR
AGREFSNNFMNQLLLKLYIKYPEKRFKNKFTFLSYMEQILANEKHQGPLV
NHTSFRFSCNIEKNLLEYEKYLNKIESSFDTSKEMQVRKKIAGRFSTELA
YEILTKVQFKTNHGNSVVAALVPNQLALSERQIATLSEQLEAVYGVNGYY
VQEVEQEEQITDIKTEDVGYDEDGILEGGRKEEIEKKNSKIKEPDIISSN
KDIGILDIGKELDATNKNTVWHQIRKGLRKELGEHIDQAWFAKAEAKECR
NTGLLTLTMPTRFMADWVRNNYSHVIRRLSEGYGIKRVEYGMRDIL
>RF_0382 Transposase
MARAYSYDLRVLVIKSIETGKTIKEVSNLFSITIIEWKKLKKCTGDVKAR
SGYHTGHRRIIRDIEGFKKFIALNCDKTTIELANIWNQKISASTISRLLN
KLGYSYKKNLSSSQKRYWFKE
>RF_0424 Excinuclease ABC, C subunit, N-terminal
MYWVYILCSNKHGTLYIGITNNIIRRAYEHKQKIIKGFTSKYNIIKLVYT
EEFTDIKEALTREKNLKKWKRNWKIELIEKANPEWKDLIE
>RF_0383 Transposase
MYIDESGIEDNSCREYGWSVIGKRCYGEKVYQHKSRISMIAGLCHKEIIA
PIIFDGNCNSNIFETYVRDILIKELRHGQIVVMDNINFHKNSEVKRLIES
VGCSILFLPTYSPDLNPIEHYWFKIKNEIRKNASKFEQFLDAVYYTLKKV
TNLSH
>RF_p63 unknown
MGGSNAADRVNWSQLQFQWRDAIIWPDNDQPGFKAAEVIKDKINKANEHI
GFVSVVDPRRLQFGGSTHKDLLPEKWDQEKSSHYIKYLEATGKGGVAHDY
LKYDSIMYQDILTSLAMRDERLSKSIKELSDSNNTSDIETIEHRTKLIDD
TQNLYEKKALEYSGIAGTNVVYRGHLELMVKNYGESHEKVT
>RF_0436 Transposase
MVLGIHRFNKGMLDFAKHYSFRLKVCRPYRAQTKGKVERFNRYIRESFYN
PLVTKLKTSELVLDVDTANSEVLKWLRDTANLRVHRTTGAIPAERLKLER
NHLQPLPLDYSGSHPTVLEIMRDKGERFSTVSLQHSLCIYQSILEAL
>RF_0972 unknown
MKTTDRLYNNQISDSSNNNMEQIYSHIVSLSKIKQGTPGNRTSTNPEVSK
RRLDSLARLVTGDNICSAIRYYNDTILIASNSGGNELAKEVLDTVKDFSK
DNRKNGKCLEDELLRLYVKSSWKPFIKQLINQQKEISTLKNSSEKRVKAL
YNNIEKLLSWPGIMKAPCNNKKKQTDYINELTKLFQGEQELNKFCDFCSE
CIKSAQNTKSFEKEHKIIGIIRHPLKDIKKVAADFIDPEMSKFSNKVKQA
IIDGKIKYLNNQNSQKEKIHAEMRILQEIYQQNNNNLEILKNDLDSEYIG
ITKLCCLSCQVTIEALTGKELEESEIVRGNHGKAYEYWKAPDFVYKDEDL
QKKILYVFDLLTKKDNKKYHKLGKDGADFSDSSVGSYALSDEDKAKLQKA
ASTLSQQGVTPIEGAGKNNQSRYIGNNKNKEKKVIGR
>RF_0101 Transposase
MNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGAVEIEVPRDRNSSFAPSL
VAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQELYGADVSESLISQITD
DIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQDKRIINKSVYVALGIDLE
GRKDILGLWISENEGAKFWLGNFTEMKNRGIQDILIACSDNLNGMSEAIG
AVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAGDLKPIYTLAQKKKHFPL
>RF_0624 unknown
MTADYSFLKSFAEYIIDKLEKGTEVQIILPNNFSCLELKKILTDKYKIKL
PIIIPFNSLISKKTDSDYVSKIEELLIISKIITEYKDLQFNKNESLKAAE
ILRKLINDLIINNIDIKLIEVYNNSNYWQKIYKFLEYCFLRWQEEISLTQ
KQTKAIHKLKLLQEEIIRIKNKQIILVGMFKPNVFLKRFEEDLKDYIVYY
NQTSKQISDGISYYEPNDIYEEAVAIAYICSRNKDKRIAIITNNNKLKRV
YCNFLDRYEDLLGNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLI
NCSATQKLEVMLSNKNRFISSPKYLLQLQFDNEDTKEYCRNLIDILFTDN
PHNILDILTLTKEIAEKLLPTIWEKEGGAELVEFLTNLTAYSKYINSMDK
KDFPKIFSFLLSNIKYYKNTDSANIIIAPPEDLALCTFDLIILPHFNNEN
WTPTAKSHPWLSKKALQILNIDYNETASTLYSDYFNLFLQNKQVIILNAK
KYDGKLSVPSNLFLKLQDVIPAVHYVIPAEAGIHLDMDSRRCWNDIRKDD
IGDESTAHSHSFPSVLSVTDIETLIRNPYGFYAKKILGLRKKDNIWEEPK
ISDFGNFIHKVLEEYSKNYDKQFINLNLLDKQNALINIGNHILYGTILPN
YTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFETKGELRLNIAGQDIKI
IGIADRIEISKSNHITILDYKTGTIPTKKEIELGLSPQLIIESLMLLENG
FNIKNENTIVNSVGLGYKARGATPIIIGETTSNDVGKPKSIDYTIAYVKI
TSTEPYVQTTEIALSIETLNKHKAGLIKLLEYYVTNKSFSYDLNLSKYND
YLHLSR
>RF_0052 Transposase
MIILEQIMEIKILNKHGKSLRSIAREVGVSVNTVRKYLKYDGSPKYKDRS
ELVTKLAPYKDYLSERIKSAHPVSLPGTVLFQEIKELGYTGGITQLRDYL
RSIKPVAKQEDIIRFETASGKQMQVDWIEFRKGKDPLSAFVATLGFSRAS
YIEFVNNEKLITLIECHKRAFDYFGGVPEEVLYDNMKTVILDRDTYGPWD
TPF
>RF_0712 unknown
MQTRHLQALFMTSHLQRKKILPVSIGALLKGAKFALTNPVNSYNLVKLAS
SSDIYLDSNFQKSVLEKSEIWDFLKKHADDLPKIGQILAKAGFREFQEGS
FLDQKGLTTLKECFKNDTVLKSIKEIAIELKQDVPDYNKVTSKTLEMLST
DKNFLKFFNEKGKDIADYIRTGATEILPSDYIKAFDDILQKPQGKDTYAK
VIKIFNEHPEFKQELAENINNPTALKRFNKLSPEKQIIIEGFLIETKEQA
KPFLKEYFESYKVDPSIVDTIPTLLNKMPETKEIFDTLNAPNQGVMVALE
KSLEMVAGDDKLKSFFADNKTVLPDIASAIIENTPNIQSMTKEYNFDKQM
LSIVGEVMSKPEIAHAIITDINKGNYMNVTSRVINAFNEPSFKLKDILVE
QSKEGLFDNLIKGVLEQD
>RF_0545 unknown
MYSKINKVHDFKEVIEAVKQADNTSLVLFDVDEVIVMDSDESRLTHDYRK
ELMNNIEKRLTRKECELLLSVILKEKKARFVNSDILKIFALLKEKNIPAM
GLTKLPTGKFGVIEDMIEWRIRELTELKVNFQEFSPLEDKITIEDFNIGY
GKPTLKDGIIYTAEYDKGSVLEYVLRKTDYYPQSIIFIDDIEENLLSLQE
ICKKLKINYQGFEFMGSAIVPEPDLDEQLEKIRFEILEKEYKWLTDEELK
KHTLS
>RF_0437 Transposition helper protein, OrfB
MNLQHQRIEELCHSLNLMQIAENYLDIAQSSSKEDSSYTDFLESILKTEL
LARQHRSKSILTKMAGFPAIKTLDDFDYDFATGIKHKVLEGLRSLSFVER
QENIILLGPSGVGKTHIAIALGYAATQCGIKTKFTTAADLMLILNAGLNQ
GNLDSIFKRVILPYKLLIIDEFGYLPLKPEQANLLFQVIAKRYEKGSIIL
TSNLPFGQWHNSLAQDSALTAAILDRLLHHSTILNIKGDSFRLKDKKKTG
LVPIEIINKQEDNFMT
>RF_1195 ABC-type transport systems periplasmic component
MASIKHKLRIFLSFFCLIYLTSCQTPKEEPISFPKKEQKEIEIAILMPNQ
GPDNIVGKQYKDLIKMGLNDGIKSYIHVTSYDGSDEKNVLAAMDKIVARK
TKIILGPLYSNFTSLIAEKAKANDIIIITMSNNPALAEDKLFVFGHAPLK
QLIRIINYYASNDHKDFMALLPKGKHSQTISQVMQNILIQKNASLSRTEF
YEDNPESIAKAARNISDNTDIINERSDTTKPVIYLSDDPKNLNILADSIR
KYNLDKKAILIGDNRIDIDYPENIDISFTGSLNLLNSNVPDRAKDLGINH
MGFIHLLSYDLGRITANYIGNEFASERFLNRMNSRQPYIGLSGNIHFIDG
VAQRRYDIIRKENGVYSTVSGN
>RF_pd57 Transposase
MRFVPIKTVEQQDILSIHRVRERLIKNRTALANEIRGLLHEFGFIIPQGI
NKVMTKLTEILDEGNLSQLGYQTFSELKEEFLDNNKKIKEIEKRLKIITS
NLTQYQRLTTIPGLGLITATALIASIGSATNFDNGRQLSAWLGLVPRQHS
SGGKDKLFGISKRGDVYLRTLLIQGARAVLNAKIRFTSEEQKSKKDFSKF
TQWMFNLSERSGHNKTTVAIANKLARVVFAVLRSGDDYVESKVCS
>RF_1183 (Di)nucleoside polyphosphate hydrolase
MNELHIKLQNYSSTYPEEIVTKTKMLEFLNEYDNPFSRDLQIGHFTASAF
LLNNDKTKFLLMHHRKLDKWLQPGGHCDGDSNILNVAVKEAIEESGINEI
KTINREIFDIDTHYIPQTHKEPAHYHYDVRFLLKTVDNDNFIKNNESNEL
KWFNFSDYSKLDIELERSVTRMIEKFIKLRSCTLLIE
>RF_0051 Transposase
MVLGIHRFNKGMLDFAKHYSFRLKVCRPYRAQTKGKVERFNRYIRESFYN
PLVTKLKTSELVLDVDTANSEVLKWLRDTANLRVHRTTGAIPAERLKLER
NHLQPLPLDYSGSHPTVLEIMRDKGERFSTVSLQHSLCIYQSILEAL
>RF_0977 Transposition helper protein, OrfB
MNLQHQRIEELCHSLNLMQIAENYLDIAQSSSKEDSSYTDFLESILKTEL
LARQHRSKSILTKMAGFPAIKTLDDFDYDFATGIKHKVLEGLRSLSFVER
QENIILLGPSGVGKTHIAIALGYAATQCGIKTKFTTAADLMLILNAGLNQ
GNLDSIFKRVILPYKLLIIDEFGYLPLKPEQANLLFQVIAKRYEKGSIIL
TSNLPFGQWHNSLAQDSALTAAILDRLLHHSTILNIKGDSFRLKDKKKTG
LVPIEIINKQEDNFMT
>RF_0159 Transposase
MIFLGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRVFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFDERI
>RF_p34 DNA polymerase III, epsilon subunit-like protein
MKHYWTKDHKYYRLTTQANLFGTTDLICSWGSLHSNKGNYKVIHCNSPYD
MDKNIKRITRIRKARGYQHTLPMQEVSNTAGKDFKYNNLEQIADILSISD
QYKVIKRYTKPNFYHLPDNTPKQIGIFLDTETTGLSHEKDKILELGMVKF
EYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGITDEMVQGKAIDQEAV
TQFLENVDIIIAHNASFDRPFFDKMFLHLPPKAWGCSRADIDWKAEKIES
HKLEYLAYKYNFFYEGHRAVTDCLAGLHLLAQTLPIAKQPVLKQLLVNCN
KTRFKIWAKNAPYDTKDLLKARGYRWSTHPQDNYKAWIIEVFEDNLEIEL
AFLRSDVYSTPYNIPVQTINPVDRFRV
>RF_0920 Transposase
MCKFLKGCIKENITKREITMTQKQNAAMEQAIDLLINNDTDVSILFREDG
LLKEITKRLVERALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFAPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLISQITDDIIEDVKLWQSRPLDPVYAIVFFDCLIVKVRQD
KRIINKSVYVALGIDLEGRKDILGLWISENEGAKFWLGNFTEMKNRGIQD
ILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSYKDRKELAG
DLKPIYTLAQKKKHFPL
>RF_p57 Transposase
MRFVPIKTVEQQDILSIHRVRERLIKNRTALANEIRGLLHEFGFIIPQGI
NKVMTKLTEILDEGNLSQLGYQTFSELKEEFLDNNKKIKEIEKRLKIITS
NLTQYQRLTTIPGLGLITATALIASIGSATNFDNGRQLSAWLGLVPRQHS
SGGKDKLFGISKRGDVYLRTLLIQGARAVLNAKIRFTSEEQKSKKDFSKF
TQWMFNLSERSGHNKTTVAIANKLARVVFAVLRSGDDYVESKVCS
>RF_0123 dam, Site-specific DNA adenine methylase
MKLKVVKNEELSFNEALAMIGQAPLKINSPEIEEDGILKPFIKWAGGKRS
LIKELCLRLPASYNNYYEPFVGEGALFFALVPDKTIISDINLDLIITYKV
IKDEARALIELLAKHNANHSQDYYYAVRKNANSDNPIEIAARFIYLNKTC
YNGLYRVNSKGEFNVPMGAYINPNILDENNIIACSKALQNAEIIYQDFGN
ISPKPKDFVYINPPYQPINHTSFTKYTKLDFTEADQIKLYEKCRELHKNG
VYFMLSNSDSDFIKNLYKSFSIDIVNAPRSINCKSDSRQRTNEVLIRNY
>RF_0916 dat, Methylated-DNA--protein-cysteinemethyltransferase
MSLKSAWLDTPLGSMLVISDEERLYLLDFAESKGLEHKIKRLKAKTKSAI
TEDRTKPILSIEEELKLYFNGTLQKFNTSIYLLGSEFQKLVWQELMNVPY
GETRSYFTQAKLIGRERSYRAVANANGANKFAIIIPCHRIINNNGELGGY
GSGLDRKKWLIEHEKQNY
>RF_1373 dinJ, DNA-damage-inducible protein J
MSADSIVRARINEDVKEEAALVLAAMGLTLSDAVRMLLFRVAREKALPFE
PLIPNDETIKAMKAARSGKLVHIGNINNLLSDLNEND
>RF_0364 dnaA, Chromosomal replication initiator protein DnaA
MSTNQIILTDQGDNYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLN
TVILCAPTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKELPGTTQT
VIELPTKTFADIGSSELNSENIFSTLDVRFTFDNFVVGAPNELAYAAARA
VAESSGAVSESNPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAE
KFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICGKDSTQEEFFHTF
NTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLG
ILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEI
TLENTQNILRDLLRSNERIITVEDIQKKVASRYNIKLSDMSSSRRLREVA
RPRQIAMYLSKALTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIEL
REEINLLMKILQN
>RF_0860 dnaB, Replicative DNA helicase
MARNKINNDKNIAANEEADIPIPRVLPSNVQAEQMLLGAILTNNELLSYV
SEFLRSEHFFEPIHQKIYNAIEKITEKGLIATPITLRSMLTQDELFQEIE
GAEYLAKLITMSMMVINPVDYGKIIYDLAIKRNLINIGEEVVNDAYNSSL
EIEAREQIEHAEAKLYDLASESLNEKSFTRIGIPISESLASINRAMKNND
HVIGISTGLLDLDNKLFGFHNSDLLILAGRPSMGKTAFAINLALNACNNM
RLKNIRDNQEIQSVGFFSLEMSSEQLTTRLLSMCAEIDSTSLRTGILGEE
KYNRLRKEANTLSELQFFIDDTPALSISAIRTRARRMKRKHNLGILFIDY
LQLIRGVSKSENRVSEISEITQGLKAIAKELNIPVIALSQLSRAVELRED
KKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPAAGDAKHAEWLDKL
NKVYNIADIIVAKHRNGPVGNVPLYYDSQFSKFGNLEKRTFSSN
>RF_1244 dnaE, DNA polymerase III alpha chain
MRPEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSL
EFALYAVKKGLQPIHGVILNIKYDIDIFAQILLIAKDETGYKNLLKLSSL
TFTKNDRKLCDHIDFEDLIEYQEGLIALCCYTDGIVGKCLLARSEEQAML
FARKLQDILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKVL
FSEKTMHDAHDVLLCISAGVTKEYPDRKTVSENCYFRSPHEMIELFSDLP
SAIQNTVNLRERCYFAAHANPPMLPNFATKDISETDLIRKDAKEGLLARL
ATKFKSENIPLQNQEELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKW
SKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMP
DFDIDFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLS
LPYKFADYLTELVPFSAVNPVSLEQAMREVPELANAAKGNGLYNLEGEAE
LIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVV
GYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDN
KTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPME
NIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYT
LGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKF
AGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHDKINLFL
QEAKDSGIKIIAPNINISEGYFSVKSVIPQAATCHPQGPLCHPRVGGYPE
KVKTVLNHESMKMDSRFCGNDIKGSRNDIEDTGYDKEKSTIIFALGAIKG
VTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIKSGCFDE
LHDNRLQLFSSISKLLAYSASYHAEQESNQFSLIKVSSLSPNILIASDYA
DNNTLAFYEFESMGLFISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNR
VNLAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEEVLKDYVHLLD
VKSLVVVNCDIVKDEGGIKLTAKSFSSIEDAINNKQFELQLYPQNHEELR
QIVTLLAARTNNRDQSNAKATIYLQSEGVKNFVAKITLPEKFFLQGQDFE
ILKGYSK
>RF_1358 dnaG, DNA primase
MRVAPEFYELLRNRINISDVVRQKVALTRKSGNYVGLCPFHQEKTPSFTV
SDSKRFFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTA
KQKEFYEESDEILNILELANKFFRTQLTPEILNYLHERGITEETVKEFSI
GFAPKNNKFEKFFHDKNIDIIKLGKAGLIGKRENGEIYNLFSNRITIPIR
NIYNKIVGFGGRVLGEGLPKYLNSPETTVFQKSETLYGEHKAISSSYKKN
HSILVEGYFDVIALHQAGFSEAVASLGTSVTENHLHKLWRAGDEIILCLD
GDNAGIKASIRTINLALPLINSEKKISFIRLPNGLDPDDAVNKNGADFFA
KLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKDYCSKISDSNLKA
SYYRFFKEQIWQNLVTKQKKATTKNSNLAPIISSHGYSELEMLEHAFCAL
LVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNNVEASEITA
IVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQWLHKKYYLINLQ
QEYSITINSTDNHDFEKVLLYKKEILKIANELQVLNESFINHTIT
>RF_0649 dnaN, DNA polymerase III beta chain
MLKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNM
DLYLSQKIAVQVVSEGELTVSTKTLNDIVRKLPDSELTLTDLGTTGLEIK
GKNCKFNLFTLPVSSFPPMDSINPEASFKISCTDFAKIIESTKFSISLDE
TRYNLNGVYLHIKDKEFCSASTDGHRLSISWVTLEKQIKNFGVILPQKSA
EEILKIVKDPKNINEDIEILLSSNKIKFICNENTIMLSKLIDGTFPDYSA
FIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEISAVG
EARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLVE
LYFSDVSAPVLIKFPENPKDIFVVMPVKV
>RF_0176 dnaQ, DNA polymerase III epsilon chain
MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPER
DMPFDAYRIHGISGEFLKDKPLFHTIADDFLEFISDSKLIIHNAPFDIKF
LNHELSLLKRAEIKLLELSNAIDTLVMARSMFPGSKYNLDALCKRFKVDN
SGRQLHGALKDAALLAEVYVELTGGRQSAFKMVDKSVETNNLATNQVNNK
TEQATIVIKPTKEELQKHKEFLSSILKTA
>RF_1364 dnaX, DNA polymerase III gamma and tau chains
MTRYDIKSLITIVTDINSSNQYIPFARKYRPSNFTELQGQEVLVKVLSYT
ILNDRLTGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT
NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDE
VHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRR
LSFEEIFKLLEYITKQENLKTDIEALRIIAHKSEGSARDAVSILDQAASM
SAKFDNIISPQVINQMLGLVDSSVIIEFVECIIHRETEKAINLINKLYNF
SVNLEIFIESVADFIAYLNKVKMLPNYSLPIYESFNDRTKNILDKISLPH
LSILWQIYNKGVGEIKISYNGLTETEMLVIKSIYSTSLPLLADFDGNNQN
FNQPINPEIKKKFEIVDFLEYLYKNNEIDIYYFLLNNTELKNLSDNRLEL
VSLEVTSKIKKQIEDLLAAFTKEKLEIVIIKEQSKQTLKNQLIGKIEVSN
DFGLIKKHFPNIVISDILLKS
>RF_0531 dprA, Putatie DNA processing protein DprA
MLKELFSAPKISYDIETINILRLIRSENIGPKTFFSLIKLFGDAATAIDN
APDFSLRGGKSKPIKIFSKSDAEKELELLEKDNAKIITYKSPEYSKLLLE
IYDPPPILSYKGNIELLNHNKCVAIVGARNASANGRSFAHKIANDLVKEG
YITISGLARGIDSSVHQAAISQTIGVIAGGIDHIYPPENKKLFENLAEEG
LILAELPIGSTPLGKHFPQRNRIISGLALGVVIVEASLKSGSLITAKFAL
EQNREIFAVPGFPLDPRCQGTNKLIREGAYLVESVDDIVANLPQYEEFMK
KDNGLFKDFVELGTVNTRYVKEPSQKERTAILELLSSVPIDFEFLQKETE
LSLPIIYTVILELELAGKAIRHAGNKISLVYA
>RF_1055 gyrA, DNA gyrase subunit A
MTDQNFSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRII
YSMYEAGNHASKPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLR
LPLVDGQGNFGSMDGDAAAAMRYTESRMAKVSHKLVEDIDKETVSFNPNY
DGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNLGEVIDACCLYID
NNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAEIE
NIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNG
VRIFIELKKDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEV
IAAFVSFREVVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKAS
NNPNAAKQELMARSWDALNILPLVKLVDDKAMLNEQGKCSFTEVQAKAIL
EMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRTRLLEILKEELIKV
KEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSSYRA
QKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPL
SNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIR
RSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRF
PVESLRVIKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLTVP
WEKRLEIAKGEEFNLEELGVTLTADSILEMANSEEFILTVTENGFGKRSS
AYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRC
KLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETSESEEDSELEEDLEQ
AEEVYT
>RF_0947 gyrB, DNA gyrase subunit B
MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYE
VVDNAIDESLAGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHQEEGISAAE
VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELRIWRNNKEYL
IRFNNGITEAPLAVVNEDINKKGTEVTFFPSVETFTNIEFDFGTIEHRLR
ELAFLNSGVKILLVDNRFEEAKEVEFYYTGGIEAYVKYIDRAKHAVHPCI
VVNTENTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI
TRVITSYLDTTGLNKKSKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDK
LVSSEVRPVVENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKAR
ELTRRKSALEVSNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSK
IQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTGVDNREFSLEKLR
YHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKVKK
GAAEFYLKNEQALQDYLIKSTINDATLTLDGKEQLVGDNLEELINKVVKF
NGLLDHASKKFNRSITEILAINDLLNNKIFELESDSRLQKALDVLNSLEE
SPDKTNWEVLKHENKVEFFRFSRGLKESKILLKEQLESFEFVQISKLALT
IFDIFDKQLKLIVKSQEFGILTASQLLNAIIECGKRGISIQRFKGLGEMN
SNQLWETTLDPAKRTLLQVRVAEVDEAEGIFSTLMGDVVEPRRLFIQANA
LNVVNLDV
>RF_0201 himA, Integration host factor alpha-subunit
MTITKEKIATMLSSKLGFSNNLCEEIVNTVFFNILEIAKEQKLTLKNFGS
FEVKQKNPRPGINFHTKSPIIIESKKNLRFIPSTKLKALINEHDK
>RF_0767 himD, Integration host factor beta-subunit
MVTKNYLIDKVHDKLNYLSKEDVKDSVDLILDYLSRSLKEQERIEIRNFG
NFSIRKRKFPESNKFYNIVYYRMPKNLFKE
>RF_1078 holA, DNA polymerase III, delta subunit
MKFYFSQIGRLFELIKAGKIRALLLYGPDKGYIEKIYKHLVKSLNMLQTS
IEYSELNISSLEILLNSPNFFGQKELIKIRSVGNSIDKNLKTILSSDYIN
FPVFIGEEITSSGSFKKFFETEEYLAAVACYHDDEAKIERIILGKVEKTN
KIISKEAITYLKAHLKGDHDLICSEINKLIYFIHDRREITLNDVLKVISS
EITANGSDLAMYFSKKDYSNFLQELEILKKQNINEVLIIRALIRHYLNLY
IVLSKIKNGESLELAIKSLSPPIFYQYINDFTKIANSLSLTECLQTLKLL
QQAEVDYKLNPAGFDLLQSIL
>RF_1107 holB, DNA polymerase III delta subunit
MIIERLEFNLKHNKLYNSWLIEAENIEQALKDLEDFIYSKLFKNSIPLEN
NPDYHFIARETSTTSNAKNISIEQIRKLQDFLSKTSAISGYKVAVIYAAD
LMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVSSSQ
PHSINELYLQFIQPIANNETLDFINRFTTKDRELWLDFIDNLLLLLNRIL
KKSANVNIELLDLENKIFDKLPNKHPSYLLQKFTDIKKLIYNTVDYDLDL
KTGYILVVNEFFSN
>RF_1108 hupA, DNA-binding protein HU
MSTHNKKEPKKMNKTEFIAFMTDHGHNHKHASHKTLTKADAEKALNLVLD
SVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYNQPTFR
AGRKMKEACN
>RF_0192 ligA, DNA ligase, NAD-dependent
MLFLINTTKSLKKHDFLMQNIDLISEEEAKKLLEELADKIAAYNHAYYIE
DNPLVSDSEYDQLFNTNLKLEQKFPHLVLENSPSKKIGAKITNKFAKITH
QIPMLSLSNAFDEQDVRDFVDRIKNFLRLDEFAPIFCEPKIDGLSFSAIY
KNGLLTTGATRGDGYVGEDITANIKTIKNFPHKIDNAPEFLEVRGEIYIE
KQDFLNLNKEQEEQGRDKFANPRNAAAGSLRQLDASITAQRSLKYFVYSG
GVTEQNLASSQEQLLIKLKEFGFSVNEISKLTNSEEEIFTFYEYLKTNRE
NLPYEIDGVVYKLNDFALQNRMGFIARSPRFATAHKFPAIIGRTKLLSIT
VQVGRTGTLTPVAELEPIEIGGVTVSRATLHNFQEIMRKDVRIDDYVFLQ
RAGDVIPKITGVDIGKRPNDTIAFDTPLFCPSCNSKLHYAPEDIIIRCDN
GLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIFFLK
EKNDSSLTKLENMDGWGKKSVENLFKNIEQSKNVSLPRFIYALGIRHIGE
QNAKLLAREFGSYANFIAQMELLSKNDLDIYQKLNDLEGIGDKILVDIID
FFDVKENTTLIKKLGEVLNIEDYKETREQSSLTGKIIVFTGSLPTISRAE
AKATAEKLGAKVAASVSSNTDLVVAGVDAGSKLKKAKELNIKIIGEEEWL
TLIKNV
>RF_0367 mfd, Transcription-repair coupling factor
MLQQKFPATAKSFFATHNFTKNLKQDFILSSSNEDEALQLYKQALFFSSN
ENIYYFPSYDTIPYDHTSPNANILSRRAEILTKLTTNNSNGKLLITYAAN
LLNKLPPKDFFSKYFLKLSPKMKFTTDELAMFLVENSFTRNASSIDVGEF
AVRGEIIDIILPGPKAYRINFSWDYIESIKEFDIDTQISTKSCSELVISP
ANEIVLNSETNGNFKNNYLRNFGVNHTDNPLYEAVISGRKFAGYEQLLPL
FYNSCSSLVDYLNDPIFIFDNLSKQAILEFEHSYNDFYSARSEVNKLKFN
SFYPTLSPTDLYFTASEITELLEQKNNIFISYENSEQATLIENISSASFI
EKKTVFDKLFEIIKAHSSKKIVIGAASLSGLERIKSITQNYEYKYNEINK
LDEAKASVINVGIIPLNQSFYTKEYLFITASELLEEKSSSTNTNKKLKNI
LLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGNDKLY
IPVENIEVIKKYGNDNAELDKLGSSSWQRSKAKLKNRIKEIALHLIQIAA
KRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLMD
RLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRF
IERFKGFGLNIKQLSSVISAKEAKIIRSELESGKINIIIGTHSLLHKNTK
FFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTG
LKELSIIATPPLNRLEVRTMVMPFDPVIIRDALLREHFRGGRSFYVVPRI
KDIEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILVSTT
IIESGIDIAEANTMVIHKADMLGLSQLYQLRGRIGRGKVRGYAYLTVASH
KKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQIKE
VGTELYQEMLEEQIAIFKDEPIVSEQLFIPTINLGLSVFIPDNYISDSAL
KLGLYRRIGNLSNEIEVEKFKDEMIDRFGSLPIEFNNLLDIVKIKLLCFK
LNIENLDSGDNGFVIKFYKNADMTDKILKFVSTYSNQAKIKPDNKLVYIK
KLVDKNIIVEVNQLLWKLGGCRLDVIPNTSLRGAKRRGNLIK
>RF_0560 mpg, DNA-3-methyladenine glycosidase
MNKLILLPREFFARDTNLVSTELIGKVLYFQGKTAIITETESYIGQDDPA
CHAARGRTKRTDIMFGPAGFSYVYLIYGMYYCLNFVTETEGFPAATLIRG
VHVISPENLYLNGPGKLCKYLGINISHNKCDLINNNEFFVSDIGLKLPYS
TTTRIGITKGTDKLWRYVVTDIIRLPA
>RF_1387 mutL, DNA mismatch repair protein MutL
MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDAGSTKIDIILERAG
KNLIIISDDGIGMTDKELEIAVERHTTSKLDESDFLNIHTFGFRGEALPS
IAAISKMLITSKKQGADKAFQIKLIGGNEKQVTVSVHNEGTKIEIRDLFF
ATPARLKFLRADKTELAATVDVVKKIALAHPEISFSLTHDDRNLLKFKGQ
NKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYTSIPTYNRASS
EDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPLCAIFLQIDPQLVDV
NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNKSHVTSTTIASDALQLFKN
PLVNKQPSVSKAVSVNSKPADYRPAMSPSFKPTPNTACQKLIDTLPHAKI
EQEVERRIEHEQQVHKQYKLGAAKAQLHTTYIISQTEDSIVITDQHAAHE
RLGYEKIKDYLKTEELIKQRLLIPEIVELPNERKADCLYENREKLYKLGL
TLEKFGEKSIIVTEIPNILEDVNVQKLIQDLADHLSDFGENIALTELIEH
VTETYACHYSIRAGRKLSADEMNALLRQMENTPFSGQCNHGRPTYIELKL
KDIERLFGR
>RF_0242 mutM, Formamidopyrimidine-DNA glycosidase
MPELPEVETLKNSLKDKLIELIIENVELKRDNLRYKLSPLLASEISNTNI
LDVRRRAKYLIIDFNNDYSLIVHLGMSGRFTLQPSNYETKKHDHVIFDLS
NGEKLIFNDTRRFGMIYNFKTNFLEKELFNNLGVEPLSDSLTLEYLKSKL
ITRKIPIKNLIMDNRIIVGVGNIYASESLYLARIHPDKLGSNLRDDEIES
LIKSIREVLAKAITAGGTTLKDFVNGDNKPGYFTQQLTVYGRERQNCLNC
SSTIIKTKHSGRSTFYCRTCQYSEFT
>RF_0483 mutS, DNA mismatch repair protein MutS
MNLQEFKQKYNYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEMFYEDAI
LASNVLGIALTKRGKNGEEEIAMCGVPYHALENYLTKLIEENYKVAICDQ
LETPEEAKNRGGYKAVVTRDVTRIITPGTIIEENLIASAEPNYLASLVIT
KNKETASLCYVDLSTSEIFVVNVPEAEILNELARLKPREILLSENLRSSN
LADSIFKQLNFRITYQVDSFFAINKCEKIILDFYKMKDIKGIGEISSSQI
CAIGSILEYLSLTQKQNIPHLPIPRIINFHSYMTIDFATRRNLEIVTNSQ
GTLKGSLLNTLNHTVTKQGGRLLYNFLSSPLTNIAKINHRLNITEFFYSN
LEIVKRIRELLKKTSDIERCLTRITMNRSSGRDLLSIKYTLEAATIIKGV
FFDAYGFNLPDFIEKIIKPLSGDAELYNLIDESIREDAPNNLNDGGIIKH
EYHPKVAQLHDLINNGKLHIEKLKDQYCKETGIDSLKISHNNVIGLFIDI
TAKNVNKILDPKFIHRQTTVNSVRYTTTELQKLESELANAKTLVISLEKE
LYADICNQVIEKASYLRMLASSLSGLDVFCNFAYIADEYDYVKPEFTDDL
SFDIVKGRHPVVEKALKRESKSFVYNDCHLSEFERIWLITGPNMAGKSTF
LRQNAIIAIIAQIGSFVPAKSAKIGVVDKIFSRIGAADDLIRGQSTFMAE
MLETSAILAQSTKNSLIILDEVGRGTSTYDGVSIAWSVLEYIHDKLKCRC
LFATHYHELTVMSNFLPALQNYTIAIEESGKDILFLHNIISGAADRSYGI
HVAALAGLPASVINRAEQILLKFEKTSTGKGKNILSTESNNLSLFNLEPN
KTTISSKLDEQFRTIAPDKLSPKEALELIYELKKLV
>RF_1191 nth, Endonuclease III
MQAQIVNKIFEIFSKNNPSPKTELIYKNDFTLLVAVMLSAQATDISVNLA
TKSLFETYDTTEKILELGEDGLKKYIKSIGLFNSKAKNIIALCKILISNY
QSSVPNDFKELIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIGL
ARGNSPEIVEKELLQIINEKWLTHAHHWLILHGRYICKARKPDCDICPIK
EYCEYYNSPIISK
>RF_1051 nudH, (Di)nucleoside polyphosphate hydrolase
MRNSSKKHLDLPYRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVP
GETPSIAAMREMLEEIGSDKGYIIAESKCWYSYDVPSFLIPKLWNGNFRG
QKQRWFLIRFTGNNEDININTSNPEFDQWRWASLDELLSIIIPFKRKLYQ
AVVKEFESLIQ
>RF_0107 parC, Topoisomerase IV subunit A
MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAM
LQLRLEPNSGYKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPL
IDGQGNFGSIDGDNAAAMRYTESRMTEICTLLMVDIEKDTVDFRPTYDDS
DLEPVIMPASFPNLLANGSEGIAVGMATNIPPHNLHELCDALVHLIDHPK
AEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFRMRSRWEKEEL
SYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL
VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVL
QEFLAHRQNIVTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREED
EPKAIMMERFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAIL
EEILNNPKELWKIVKKEIKAVQTKFGLNTVIGARRTSFEEVTLTNQVVDI
TAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKFIIEAYTTD
KILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNNDITNILVHKSDQ
LLLLASSIGKGFLVNSNEVMAQTKTGKQIMNVPDGHTCIACLPVNGDSIA
CIGESRKLLVFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLSWN
NNGKVKLEKNIIAFLGKRGSTGKLPPMGFHKNNRFSS
>RF_0988 parE, DNA topoisomerase IV, B subunit
MSDLFSFNKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAM
HHLVSEVLDNAMDEAVAGFASIITIKMHQDHSITIFDNGRGIPIDNHPKF
PDKSALEVILTTLHSGGKFSNNVYHTAGGLHGVGISVVNALSKHLEIKVY
KQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEIFSEKLHFNP
KKIYELARSKAYLYRGVTIEWECEVEVPSDIPKKALINFPNGLKDYLSSK
ITLDNLIIPEIFSGNIESTPDEIKLEWAICWQNNDNSAFIQSYCNTVPTP
QGGTHEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIA
EPSFQGQTKEKLVSNGVSKPVENIIKDHFDHFLSSDKALATNLLEHVIAI
AEFRISKKNEKNISRKNATQKLRLPGKLADCTRTTPGGTELFIVEGDSAG
GSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAIQDLEIALACGSL
KNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLA
KPPLYRLTQSNKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMP
AQLKETTMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQAL
VKMDKIINELDI
>RF_1239 polA, DNA polymerase I (POL I)
MTQKNTLLLIDGYGFVFRAYYAQQPLTSPKGEPVGALYGFASMLLKLLSD
FKPKHVAVVFDSGGKNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNL
NFPILEKNGYEADDIIATFAAKTAALGEDVVVISSDKDLLQLMGENIKIY
DPLKGKYITEDDVVKKFGTTSDKLREVMALIGDRSDNIPGVPSIGPKTAS
SLITQFGSVENIFNSLEQVSSLKQRETLQNSKEAALISWQLIGLDSNVDL
DFQLNNLEWSPPNSDKLTGFLQEYGFKSLYKRAENLFDIKINDHKEIVEN
KVTEAKEISNASELADFAKKAEKIGIFGIYLLQHKGDNVALILSLQNQSY
IIKISNTSHDLFSYNTKNNNDWFSDIIFNLLTDKSIRKITYSLKPLLKFY
AEQSHEITAIEDLELMQYALSAGLSQKNLFEEALKEDNRHLSKPAYREEF
KGDTEALATAAYKSVREDASTGSTSKLPLETKFGKMSNVINESARIVAEF
TSLYKQNILELKDNKAFRLYSNIDLPICFILDKMEKIGIKVDANYLNQLS
AEFGAEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKAS
SYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHR
VHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISA
DYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHR
RKAKAINFGIIYGISAFGLAKQLNVSNGEASEYIKKYFAEYKGVQEYMEQ
TKAFASSNGYVINFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADII
KIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMEN
STNMDVPIITEIRVGNNWMEIH
>RF_0858 priA, Primosomal protein N'
MRIAKILLPAAKLFPLDYLIPESLVLNIGDLVIVPFRSKELTGIVWEFAT
IPEASKLKTVKEKVPLDLSITSEVLELIKWLSSYYMSELGSIAKLVLPID
IAEKPIKVKEQKVNNSFVLPDLSEEQKQAVTILNESNKPTLIKGVTGSGK
TEIYFHLIADYLVKGKQVLIMLPEIALSTQIINRFIERFGFEPIIWNSSV
TKAQKKMILRGILSDKVKVVIGARSSLFLPFKNLGLVVIDEEHDDSYKQD
DGILYNARDTAIVRGTFDKAQIVLCSATPSIETMYNIEIGKYQLVTLVNR
YNNVDLPNIEIIDMTKEKLSKNSYLSKILIEAIKDNLDNKKQVLLFLNRR
GYAPLMLCKACGHRFTCKFCSSWMVVHKATKKLECHHCGYQSKIFSSCPE
CLEDETLTICGPGIERIEEEAKALFPENKIAVISKDHAKNPERIAQLLHQ
MENLEIDILIGTQMITKGYHFPNLTLVGVIDADLGSNNADLRASERTFQL
LHQVGGRAGRGDGKGVVYLQSYYPDNIIFSYVKAGDEDSFFANELEIRKS
ADMPPFSKTASVILSGSNESKILEIARAMVRIAPKANVKILGPASSLMSK
LAGKYRYRILIIADKKFNLQKYLKFWLSLIKIPSFCHLKIDIDPKSFY
>RF_1310 radC, DNA repair protein RadC
MLFSAIPRKDVKPLAKKLLDHFDITDLINLDKERLLSIKGTNENLYINFA
LIRELINRVLKQKIINKNIIASWSSLIDYLKVNMGNMRLEQFRILFLNKK
NILIADEVLSQGTIDQAAVYPREIIKRALFNEASSLILVHNHPSGALNLQ
KPTFI
>RF_1221 recA, RecA protein
MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNIDIEAVSTGSLGLDIA
LGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALD
PAYAKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALV
PKSEIEGEMGDAQMASQARLMSQALRKLTASINRTNCITVFINQIRMKIG
VMFGNPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGSQTKVKVVKNK
VSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRIGQ
GRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEEND
>RF_0035 recF, DNA replication and repair protein RecF
MATSFYKICGTHVLSIRSVPRLVNSLLFLKLTFVYQLFIYSKYKYNASLT
IILFHKMKNIFLHSLTLENYRNFKNLELKTDNTPIILIGENGSGKTNILE
AISLFYPGRGLRSAKLADICKASEDQCLVKALLQSKLGLAEFTTQFKRSS
NRRITEYNESKIANNELSKFTSMVWLTPQMEGIFTSGSSDRRKFLDRIVY
NFDSKHAELVSKYEYYMYERNKILAEDIRDDNWLKIIEEKMADMSSHIAN
NRLKTLEFMQQAIDELENEFPKADLSIDGIVEQKILDGKENIVNFITAEL
YQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIIL
AEMNYAIKLTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATD
LEGIENFANKAQLIKLPIIL
>RF_0378 recG, ATP-dependent DNA helicase RecG
MYMLSILEKFLFAPVKTFINIREDTVSALKRLGIDNIRDLLFYLPVSYQN
KILSPNLTGVRDGEIIQTEVVIESVNLPKKGNQPLKITASNDTGSLLLVF
FHRPPPFIFNKLKVGTSHIISGKVQFFDHYLQISHPEFVTNPKLAKEIEP
IYSLTYLLSNKQLYSYIIKAMDIFEEKCKGLEDKEVKDYLDEVLQSLKML
HSLCHSRPLCHSRVGGNPEKMDPAVWPRDDTVAAKKQLAAKELIANQISL
LNVRTQIAGKQGNIYPKAAGIQANILNELGFELTSYQKQVIEEIELEQSD
KVEMMRLLQGDVGSGKTLVALLTMVNTVEAGFQATLMAPTDLLANQHYEF
FVKALKNTNIRVGLLTGKILGAARKNIMIQLENGEIDILVGTHALFQEKV
SFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMF
GDMTISKLMGKPKNRLPIATNTMSVNKIEHIIEAINKKLVAGERVYWICP
LIEQGEKEGPEEDGLLMDVMNRFDSIENIYRGYVGIIHGKMKNEQKDQIM
KQFKEGEIKILVATTVIEVGIDVPEATLIVIENAEQFGLAQLHQLRGRVG
RGSLQSYCILLYNPKRLGKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEI
LGVKQSGEMEFFFADLAKDYDLLLKAHKFAEIGSKGNLNFVNFQIKLFAK
SQVSELV
>RF_0763 recJ, Single-stranded-DNA-specific exonuclease RecJ
MKPQASINGKIWQQKLINEDIVTELCRSFKISDLLARIVSLRVNNLEEVE
NFLIPKIKNLLPDPFHLLDMKKAVDRTVKAILNNQKICIFADYDVDGATS
AALLKNVFRDLNILCDIYVPDRIAEGYGPTPFAMQKIKDNGTELLITVDC
GAMAHEALKYAKDLNLDVIVIDHHIATEILPDAVAIVNPNRIDEKSECKH
LAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMKYLDLVALGTVCDMMK
LTGLNRAFVASGLKVMQQRQNIGIKTLYDMAELNEIPKCYHLGFILGPRI
NAGGRVGKSSLGANLLSTSCSNEASKLAEELEKHNNERKVIELLMIEEAT
EIALTQQDSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVVALNDGIGK
ASCRSILGIDFGAEIINAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFF
NNAFRISINKLENYKHAEYDIDLTVNGVNFPLMKELNTLEPFGQGNHEPI
FKFDDLFVLKADIVGSKHIKCMLAPNKRGFGNKALSAIAFNSVGTSFEEV
LLSPKAKNIAAIGTLKTNNWQDNYTIQLIIRDILLKE
>RF_1089 recN, DNA repair protein RecN
MFHSLLVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYKT
SNNIIKRGKDYAVVNIIFSLNEEIKNFLIQNFIEPEELLLVKCLQKAEGR
KNFFINNQVVNKAIMQQLATYLFELHGQNNNISLLEANTQRDILDSYGNL
LDFRAELSKCYQTWQNTRKEIAEITLKQNSIDQEIDYLSFATEELTKLNI
QIGEEEKLANIRKDLQNKDKDLQLIKDVLEQINNPEINTSINRAEKLLAR
QGDNERFEAIATSLEEAYNNLEEARQGLSNLLDSFNYEEYNLEETEERLF
LIKAISRKYNVPADELGIFLDKSLEQLGILKNKIANSNELKAQEMLLQKK
YYELASDLSVKRLIAAKHLEESLHQELKQLKMAKAIFEIEIIAGKEPTAS
GNDDIVFKASTNPGMATEAINKIASGGELSRFMLALKTSLFDKMVKPSII
FDEIDVGIGGEVADKVGERLKKLSSVTQVIVITHQPQVAGKADLHIKIEK
TQLEKETKVTVKALNLAERQEELARMISGKTITEASLKAAKELLHL
>RF_0868 recO, DNA repair protein RecO
MNIKDVGVIIAKKPLKENTFIITVFTKNHGLYSGVVKESSKKSKFIYQEG
NIVDFLWQARLHEHIGMAKCELIKSYTGYFIINKAKLYAFNSVISLIKEL
FHEREEHSNFFSFLINYLDNLSKNFCFRDYINFELALLAETGYKLDLTKC
GVTHVTTDLNYVSPKSARALSYEVGKPYKDKLLILPKFLLSDDSEITLEE
KRQASTLTNYFFNRYLFHNNRQAEARQIFMEYILNNS
>RF_0672 recR, Recombination protein RecR
MIYTLTMNKTNDNDIDQLIYLFSKLPGLGSRSARRIVLYLLQDKDVRLKS
LINNLVEIDKKIVKCEICGNMDTENICCICSSEYRDKSVIAVVETVAELW
AMERSSNFKGLYHVLGHNLSAASRQNPSILRLPELLKRCFAENIKEVIIA
TNSTLEGQTTAYFITEYLREHPAKISRLASGIPIGGELDYLDEGTLSAAI
NLRQPFE
>RF_0335 relB1, DNA-damage-inducible protein J
MTKSAFIRARVDPELKEEAENVLDELGITPTQAVTMLYKYVAREHKWPTT
IKIPNAVTLKTFESTDNKIGLIASNNTKKMFKKLGI
>RF_0827 relB2, DNA-damage-inducible protein J
MIMNTVDIRLRVSEDIKTEAEEIFKQMGMTMSEAMRIFLNQCINSGGLPF
KPHIKIPNKETLESFKQAKNGEFESYNLKQFEKFLNDTAK
>RF_0180 rnhA, Ribonuclease H
MDSKVVIYTDGACAGNPGPGGWGALLQFNDTSKEIFGYELDTTNNRMEIT
AALEALRILKKSCNVEIYTDSKYLQQGITAWIHNWIKNNWCKSNNEPVKN
ADLWQKLYAELSKHTIIWKWVKGHANNSGNIAADKLAVQGRETAIEILKC
RG
>RF_1061 rnhB, Ribonuclease HII
MEVDLLHFEKKYHNYIVAGIDEAGRGPLAGPVVASAVIIDNTNIIPGIKD
SKKLSKKKRELLYEQITSNYVWAAAIISHIEIDEINILEATKKACSIAAA
NLSLKPEIVLVDGNMPFKDKRFVSMINGDNLSLSIAAASIVAKVTRDRLM
LDLSTEFPQYLWHKNSGYGTKEHIEAINMHGLSPYHRRSFKCC
>RF_0604 ruvA, Holliday junction DNA helicase RuvA
MIGKLSGKIDSQGDDYIIIDVNGVGYLVYASGKTLGKLAEGEFYKLFIET
HVREEHIHLYGFLTLEEKNFFNLLQSVNGIGTRMALSILSSLTPSDIQIA
INNEDKNIFKAISGVGAKLAERIVLELKGKVAKISSGSVIIKDSLNIKNI
TPVASNEVIKALVNLGFSRFEAQNAVQGIIIQNPEISIDELIKTALKNRN
AGL
>RF_0606 ruvB, Holliday junction DNA helicase RuvB
MTNILSPEKIENDQELPIRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHL
DHTLFYGPPGLGKTTLAKIISNEIGGNFKSTSGPAILKAADLAAILTNLE
KNDVLFIDEIHRLNTAVEEVLYPAMEDFELDIIIGEGPAARSVKITLPKF
TLIGATTRLGLLSNPLRDRFGIPMRLNFYNTEELKKVLNRASKLFDIDLT
DSGSEEIAKRSRGTPRIALRLLRRIRDFAAVDGKSRVDKEISDFGLNRLE
VDHIGLDSNDYRYLKFIADNYNGGPVGIETIAAALSEQRDALEETIEPYL
IQIGLLQRTPRGRVITIAAFEHLKMPIPNQSHHQFNIFNENE
>RF_1173 ruvC, Crossover junction endodeoxyribonuclease RuvC
MIVLGIDPALGSLGWAVVAKDTAKLKYLASGIIKTNSKDEIHNRLAFINS
TLEKVILEYQPNMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYNLDMR
EFKPNMVKKTVTGYGHAEKDQILHMIKLLLPGTSAITNSDEADAVAIAYT
CHVMRV
>RF_0067 sca2, Cell surface antigen Sca2
MSLQNSHSKKYVLTFFMSTCLLTSSFLSTSARAASFTQLANQIPTLSGLS
EVQRKQKWNSYTLQEKQEAWRRAKLTPDFVQAMIDMQTGFTESDLSSRNN
KTRHKAREKKSELDLYIAGTKQGFKEKVDGYISQGKIPTPEEAAQNLEID
YDAKKTDNKLEKNQNVRRVEKDKKALLDLYIHSITTSVKEKEYITTGQVP
ELGELEKALNISKEEAKHRRTIIRDQVMANERPKLVRSGTVLTKKELHKR
FGKDTTTDDTKYIDDITTEVMYTKKQGYVNTDFLPKISEIMNEFKVDKGR
ANLYLNQIKAGIEAKLLADNNQTTTKPFTKHSRTTTNTAGISSGVPFDTG
RTKPETKSFDFKRSMYSLLNRKQEDQLSKTEQHLKQQIKLEENKEEFKEI
LTKNPIDALLFAEQSNLGNSFKQEAISNIDLSKDISRILFTVDDKGNRTI
LNTILTTTPEHKDELIKQAQHHAIQTLPTSISDKDVSDKKKLTLATLAAT
EDKKVLEEALDNWLSTNGYKRKPEVESLISILLSDETTLKAGIDKIFELP
VENNVNNNSNKGQNGTPILPPTPPLNGSMPPSPPPPLLNGTPTSTAFNNS
NPNHKFDLKNFEATYPRLYKSYNEFIQNTTSASQSQATTTSNNIPDTKAK
MGESLELLKQKVAKQNEVIGLIHNEVTKLYNFSPKTFVNLFNTENEEIIK
KIEQIAKREDIQKILQDNDIKITSTFVSKIFNESLEQTKQRLRSSNIINA
KQYKRIEQYANKQECVTEFLRITNPLEQLKFANKYINILGQSTFNGKLNE
LIENPNKLTFSQKINFVLQGYQELTREIPTAKANLNKLKQNILEKIEIQQ
LIANKDISRKDLLDILNNKNPELLKSLLEAKVILEENKLNNSANEVDLKE
IIPSLNYLTSEQLTSLINRITIEGVKTALKAKWQQENKTVSNNTEKPLIY
NNGTPMPPPIPNGNSNFGTNDYLISMGYTQEFIDRMDKVKPNNNFGKNHN
YTATDFKSNVGKNYYESTSKLGGTDILLTDSQKLENAIKKEVLAKYIEEP
NRDMQDDSLLKQAFEEKFYYAEDKNTKVIPKPSEVNFDPNFIGPRTEVGQ
EIYELYEQELLKLARDPVFIEYVKNNNNTQKDERELLISFIEQIESKRPE
LEQKYGSDVQSEDNNQEKKVGHLNMKQFQSLFQQENESANDESSTKDDPQ
PEDSNKKSEKSDSETALSPRLLSSNDSKNDKSSDDKKSLLVLRSSEEESK
KDIALESEDEAIDMSFKTEAIAEQDEATQRQQVSDDTNRKVAILVKATST
LHKPVHYNILSDRLKVAAIGAGDEEASINRGVWISGLYGINKQGTWKNIP
KYQGRTTGVTIGADAEFINSHDVIGIAYSRLEFQIKYNKKLEKTAVNGHL
LSIYGLKELIKGFSLQAITSYGHNYIKNKSKSINNIIGKYQNNNLSFQTL
LNYKYRTKYDLHFIPNIGFKYDYSRASNYKEYNVDIENLMNQKKSNQSFE
SSIGGKIVFKPIATVNNIILTPSLYGNIERHFNNKNTKVNAKATFKGQTL
QETIIIPKQPKLGYNIGSNILMSKKNINVLLEYNYYTHRKYQSHQGLIKL
KVNL
>RF_1325 ssb, Single-stranded DNA-binding protein
MAGSLNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKE
RTEWHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTT
EVVLQNFNSQLILLDSKNSNNHTQDSGRSEYKHPEAKNHSFDHSDLDDEI
PF
>RF_0236 tatD, Putative deoxyribonuclease, hydrolase
MLIDSHCHLNLLTKDTDLDSVIQRALENNVQYMQTICTKIEDLPIVLEIA
EKYENVFASVGVHPCEVNSSISHCEALQVLWQSQEAWTRLPRQDYVSPRN
DAEVIIKLTKHPKIIGIGETGLDYYHQPYDKKLQQDSFVAHIHAASATNL
PIIVHTREADEDTIDILTSEMRNSKFPGLIHCFTSSKNLATKMLDIGLYI
SMSGIITFKNATDLQEIVKYVPLDRLLIETDSPYLAPTPMRGKQNEPAFV
RYVAEKVAELKNITSKEVANITTRNFKTLFSKFEKHIRLI
>RF_p32 tnpR, TnpR resolvase
MRLFGYARVSTNQQLLDLQIKRLKDAGVKESRIFHDKATGSNLDRAGLNN
LLHKVEEGDVILITKLDRLGRDTADMINLVNQFANIGVAVRFLDDGISTE
GSTGKMVITILSAIAEAERARILERTNEGRLEAKTKKVLSLVATVL
>RF_0530 topA, DNA topoisomerase I
MKLVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAM
KYDISDKAGKYVDAIVKDAKKADAVYLATDPDREGEAISWHVAEVIKEKN
KVKSDDFFKRVAFNEITKKAIIHAVENPRKLDANLVNAQQARRALDYLVG
FTLSPLLWRKLPGCKSAGRVQSVALRLICEREDEIERFKSEEYWDISLKM
QNSNNELFTAKLTHVNDQKLEKFSIINEKDAKDLTEKLKSQNFHVDKIEK
KQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKETIG
LITYMRTDGVTLSNDAIADIRKLIDKNYGDKYLPNSPRIYKSKVKNAQEA
HEAIRPTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVA
SLASENKEYLAKANGSTIAFDGFYKVYRESVDDEAEEENKMLPPLKEQEP
LKTKEIIPNQHFTEPPPRYSEASLVKKLEELGIGRPSTYASILSVLQDRK
YVSLEKKRFMPEELGRLVTVFLVGFFKKYVEYDFTAGLENELDEIAAGKL
EWKAALNNFWSGFNHNIESVNEQKITEIISYVQKALDYHLFSENKESKAC
PSCKTGELSLKLGKFGAFLACSNYPECTFRKSIVSGNDNNENDGDLAATP
NENKVLGTDKDGIEIYLKKGPYGPYVQLGEQEGKVKPKRSPVPASLNQND
ITLEMALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMGKFISIPKKY
DFLNLSLDDAMKLIEDNKAKLEKKQA
>RF_1324 uvrA, Excinuclease ABC subunit A
MIMNQEYIKVRGAKEHNLKNINVDIPRNKFVVITGLSGSGKSSLAFDTIY
AEGQRRYVESLSSYARQFLHLQNKPNVESISGLSPAIAIDQKTTSKNPRS
TVGTITEIYDYLRLLYARVGIPYSPATGLPIHSQTVSEMVDIINELPKGT
KVYLLAPIVRGHKGEFKREIMNLKKQGFQKLIVNGEVCEIDDLPKLDKNK
KHNIEVIVDRIVLDESLGNRLADSLESSLNLAEGITYLEIVELPPAVKTE
FEKNQRITFSEKYSCPVSGFQLTEIEPRIFSFNSPFGACPKCEGIGKEFF
FDRELIVPDQRISIKDGAIVPWGSTSSKFILETLKALADHYKFSIEVPFA
SLSQNVKDILFEGSGEEAIKFEFHDGSKTQIIKQPFAGIIPSLQEKDRTI
ESVLIKEELAKFKSEHKCTACSGFRLKDEALCVKIANFHIGEVAGMSIAA
LQKWFSHLEEKLNKKQLFIAERILKEITERLKFLMNVGLDYLTLSREAGT
LSGGESQRIRLASQIGSGLSGVLYVLDEPSIGLHQRDNTRLIETLKRLRD
LGNTVLVVEHDEETMYEADHIIDIGPGAGIHGGRVIAEGNAEEIKNFEES
ITGRYLSGRQTIKVPSETRVGHDNRSIELLGAVSNNLDNVDIKIPLGTFT
AITGVSGSGKSSLMIHTLYKAALKHLETTSKVFPGKYRELKGLEYIDKII
DINQSPIGRTPRSNPATYTGAFTHIRDWFVELPESKARGYKVGRFSFNVK
GGRCEACQGDGLIKIEMHFLPDVYVKCDICNGHRYNRETLEIKYKGKSIA
DILMMTVEDAMQFFEKIPLIYEKLITLNEVGLGYIKIGQSATTLSGGEAQ
RVKLAKELSRRSTGKTLYILDEPTTGLHIDDINKLLKVLHKLVDMGNTVL
VIEHNLDVIKTADYIIDVGPEGGDKGGKIVVCGTPADIAACAESHTGRYL
KQYLE
>RF_1060 uvrB, Excinuclease ABC subunit B
MNNFSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMAN
IIERTNRPTLIMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAY
IARTDTFIEKDSSINEQIDLMRHSATRSLLERRDVIVVSSVSCIYGLGSP
DLYYQMTVNLEPGKSYPRDKLLNDLINLQYERNDIGFERGCFRVKGDNID
IFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVFGNSHFVM
PQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG
SCKGVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMY
NGDRARKEVLVEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFEL
EETGDTVVELIIRPTGLLDPECIIKPATNQVEDLIGEIQATIAKGFRVLV
TTLTKKMAEDLTAYLQELKYKTSYLHSNIHTLERIEILRDLRQGTIDILV
GINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVI
LYADKMTKSIDKAMSETSRRRQIQQEYNEKHGIIPKTINRAIHALAELEK
VDSKLDKKQAHTLFDNPAKLKAHIEKLKKDMLKAASNLEFEQAAKLRDQL
KTLEEAALELS
>RF_0912 uvrC, Excinuclease ABC subunit C
MTLEITGSELIKSKLIDAPERCGVYRMFDVNKQVIYVGKAKNLKKRLTNY
IKSDLDNKTLRMIANTCFLEYSITNSEVEALLLEAQLIKKFQPKFNILLK
DDKSFPFIKLRLDHDFPQLLKYRGKTLNSGKFFGPFASSTEVNTTLTELQ
KIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKEDYRDLVAQVKD
FLQGRTKELQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVSD
IVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLE
YFLLQFYQKQQVPAEIIINHEINDKENVIEAIKKINNITKLNIIIPISGG
KAKLVQNAAINALFSLEQYLKKFAKNQEIMLEIKELFGLSEISERIEIYD
NSHIQGKFAVGVMVVAGKAGFDKKEYRVFSLSSRNSSLSSHASPLSSRNL
IAGSSSYFLDPVVKPRDDIVGDDYEMLRQVLTRRLTRLKNEPHKLPSLMI
IDGGRGHLGVVKEVMDKFEMNIPFVCMSKGVDRNAGLEQFHMTGKEVFTL
DKNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKLSSLDDIEGIGETRKK
ALLHYFGSYKAVCDATIDELTKVNGINKSLAEMIFRTLHKSL
>RF_0687 uvrD, DNA helicase II
MLNNQDFIHTLNPQQQKAVLHTKGPLLLLAGAGTGKTKVLTSRIANIVHQ
NLASPQNILAVTFTNKAAKEMAERVNSLINCYGLNIGTFHSMAARILRDQ
IEHLNLGLNNRFTIISHDDQLKLVKDIVKLKDIDTKKYAPKLIHIIISRW
KDQGLLPSKLSASDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNN
ELFIKNPEILRYYQEKYRYILIDEYQDTNVVQYLWARMLASLYKNICCVG
DDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAASNVI
NNNKNRHGKTLWTDRESGEKIKIISCWSDKEEARYIAGEIDKLVREDRYN
AGNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIR
ISLNQNDNLALERIINVPKRAIGAASLNKIRVYALERNISNFAAIKEMLE
MGEIKAKPYETLKDLVTKIDNWHERFSIDAPINVVKAILDDSGYLEMLQE
EKTEEAFGRIENINEMLRAIAEFNDIHDFIEHSSLVMENEVLETNYGGSV
TIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLDEEGEKGLEEERRIAYVG
ITRAKKDLYITHAESRKIFYEIVRSYPSRFITEIPDEITIRTSSMKKYNS
FYKF
>RF_1295 xerC, Tyrosine recombinase XerC
MLDTSIQELIDKWQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELV
TINHIKTADIRLIRSWLAKRNCDNFTTSSISRGLSAVKNFYRFLEKTTQL
NSHIIFSIKSPKKTKLLPKALSEDDVVISLEHIEEYGNVKWVELRNKALL
VLIYASGLRISEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLIT
QYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGLPQHLTAH
SFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTA
YPIKK
>RF_0571 xerD, Tyrosine recombinase XerD
MEFISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNITTEN
VRDWIEYLASNDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPK
YQNKLPEILSIDQIKSLLEYCSQDNSPEGIRLNAMIHLLYASGLRVSELV
SLKLTDILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIAKYLAIR
DVFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYANLNPEHISP
HILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHLQTNHLKKALLH
HPLNKN
>RF_0253 xseA, Exodeoxyribonuclease VII, large subunit
MHYSQLKKTKNKMLDNFIANQATKEFSVSEISNKIKELLENNFGYIKVKG
EISGLKIASSGHAYFNLKENTAILACTCWRPILAKIKFPLNDGMEVVISG
KLSSYAGNSRYQLSVDNLQPAGLGAMLQILNERKARLEKEGLFNKIRIPI
PFLPDKIGVITSITGAVIKDIIHRIRERFPTRIIIWPVSVQGENSGNEIA
EAIEGFNNLEEINKPSVIIVARGGGSIEDLWSFNDEILVRAAYNSKIPII
SAVGHEVDYTLIDLAADKRAPTPTAAAEFAVPVRSILNNTLQSYEKILLN
NTSRLIKYHEQNIINYDKIHRYLSHYMNNKQQLLDETGFNLLDALPCFIE
LQETKIKSFSKERVNPAKILNYKTLELTHQTAYLSKSANNTLKNFEYKLE
LNSTLLASLDYNNVLKRGFAIVKGETGNFLSSKITAANEKIFNIKFSDGE
IKVVRNTVIASD
>RF_0557 xseB, Exodeoxyribonuclease VII small subunit
MTNTKTLEENISFEEALKELEEIVKKIDNGQESLETAVNSFERGILLKNH
CEKKLKEARLKIEKITKLADSTGVLEETEV
>RF_1021 xth1, Exodeoxyribonuclease III
MKIVTWNINSLRLRIDLLRKLAHEHQPDIILLQETKVDDSLFPLEVIKNI
GYEHVTYSGQKSYNGVAIISKFPLNNVFSLELYNSDKRHIAAIVNDIEIH
NFYVPAGGDIPDIEVNLKFKHKLEYVRLMQEWLTTNRTKNDKIIIVGDLN
IAPLEHDVWSSKQLRNVISHTDIERSLLVELQNSLGFIDSSRHFVPFDEK
FYTWWSYRNIDWKKSNRGRRLDHIWVSDNLKDALFSIHLLSEARDWSPPS
DHVPYFVTLKSVIASER
>RF_0250 xth2, Exodeoxyribonuclease III
MKIATWNINSIKTRLNLLRNFLSKENPDILLLQEIKCETEKFPFDELSDL
PYNFYVHGQKSYNGVAIISKFPADEIIKDFPNNYCSDQARFLEIKLSLPI
GFCNIISLYAPNGSFVGSDKFVAKLAFYDNFINYLSTKKSFDEKTIIGGD
FNIAPFDIDVYSPKALAETTCFTEIEQKKLRTILNSGFEDLYRLRHPSKQ
EFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSD
HIPVIASFKR