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2024-04-29 08:11:27

Gene list

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COG category: Replication, recombination and repair
Organism: Rickettsia felis URRWXCal2, URRWXCal2; California 2

Number of genes found: 194

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Rickettsia felis URRWXCal2, URRWXCal2; California 2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RF_1211 unknownchromosome CDS1272684 204 - 0.220588
NA RF_pd54 TransposasepRFdelta CDS26644 693 - 0.329004
NA RF_0390 Transposasechromosome CDS413539 612 - 0.357843
NA RF_0052 Transposasechromosome CDS52876 612 - 0.357843
NA RF_0587 Transposasechromosome CDS628286 243 - 0.304527
NA RF_0343 Transposasechromosome CDS363339 444 + 0.367117
NA RF_0946 Excinuclease ABC, C subunit, N-terminalchromosome CDS1004592 261 - 0.283525
NA RF_0050 Transposition helper protein, OrfBchromosome CDS51661 801 - 0.36829
NA RF_0447 NACHT domainchromosome CDS475188 1863 + 0.29898
NA RF_1183 (Di)nucleoside polyphosphate hydrolasechromosome CDS1252388 564 - 0.292553
NA RF_pd64 TransposasepRFdelta CDS35202 309 + 0.294498
NA RF_0992 unknownchromosome CDS1054741 663 + 0.250377
NA RF_0688 unknownchromosome CDS735570 1317 + 0.301443
NA RF_0400 DnaA-like proteinchromosome CDS420889 669 - 0.233184
NA RF_0382 Transposasechromosome CDS408615 366 + 0.289617
NA RF_0106 Transposasechromosome CDS117804 954 - 0.333333
NA RF_0967 Transposasechromosome CDS1024520 216 - 0.337963
NA RF_0393 Transposasechromosome CDS416806 243 + 0.304527
NA RF_1205 Transposasechromosome CDS1269745 243 + 0.312757
NA RF_pd63 unknownpRFdelta CDS34541 576 - 0.383681
NA RF_0321 Transposasechromosome CDS337153 243 + 0.304527
NA RF_0341 Integrase-like proteinchromosome CDS361731 324 - 0.271605
NA RF_0437 Transposition helper protein, OrfBchromosome CDS463717 801 + 0.36829
NA RF_1352 unknownchromosome CDS1438756 1572 - 0.243003
NA RF_0308 Transposasechromosome CDS322526 612 - 0.357843
NA RF_p53 DNA polymerase III, epsilon subunit-like proteinpRF CDS49641 543 - 0.333333
NA RF_p66 Site-specific recombinasespRF CDS60292 549 + 0.338798
NA RF_pd39 Conjugative transfer protein TraA_TipRFdelta CDS13286 2724 + 0.381791
NA RF_1393 Transposasechromosome CDS1476406 954 - 0.33543
NA RF_0264 ATP-dependent RNA helicase RhlEchromosome CDS292303 1062 + 0.336158
NA RF_0103 Transposasechromosome CDS115583 849 - 0.339223
NA RF_1342 unknownchromosome CDS1428449 237 + 0.303797
NA RF_pd67 TransposasepRFdelta CDS37605 180 + 0.272222
NA RF_1204 Transposasechromosome CDS1268717 954 + 0.333333
NA RF_0263 ATP-dependent RNA helicase RhlEchromosome CDS292119 237 + 0.337553
NA RF_0914 unknownchromosome CDS976393 258 - 0.271318
NA RF_0344 Transposition helper protein, OrfBchromosome CDS363779 801 + 0.36829
NA RF_p15 unknownpRF CDS13287 786 - 0.358779
NA RF_1008 Endo/excinuclease amino terminal domain proteinchromosome CDS1069305 435 - 0.294253
NA RF_0931 Transposasechromosome CDS991185 243 + 0.304527
NA RF_pd60 hypothetical proteinpRFdelta CDS31938 204 - 0.318627
NA RF_0855 unknownchromosome CDS905899 1749 - 0.296741
NA RF_p55 TransposasepRF CDS50971 507 - 0.329389
NA RF_p39 Conjugative transfer protein TraA_TipRF CDS36852 2724 + 0.381791
NA RF_0387 Transposasechromosome CDS412009 237 - 0.320675
NA RF_0383 Transposasechromosome CDS409021 468 + 0.303419
NA RF_1139 Transposasechromosome CDS1208405 954 + 0.333333
NA RF_0978 unknownchromosome CDS1035905 252 - 0.31746
NA RF_0359 Site-specific recombinaseschromosome CDS376272 1584 + 0.285985
NA RF_1195 ABC-type transport systems periplasmic componentchromosome CDS1262279 1119 + 0.319035
NA RF_0850 unknownchromosome CDS899124 1926 - 0.288681
NA RF_p60 hypothetical proteinpRF CDS55504 204 - 0.318627
NA RF_0545 unknownchromosome CDS581921 768 - 0.283854
NA RF_1140 Transposasechromosome CDS1209433 243 + 0.308642
NA RF_0306 Transposition helper protein, OrfBchromosome CDS321311 801 - 0.36829
NA RF_0165 Superfamily I DNA and RNA helicasechromosome CDS181625 3087 + 0.302235
NA RF_0041 unknownchromosome CDS42136 2256 - 0.247784
NA RF_1375 unknownchromosome CDS1463280 465 - 0.32043
NA RF_0972 unknownchromosome CDS1030734 1314 + 0.291476
NA RF_1136 unknownchromosome CDS1204059 849 + 0.29682
NA RF_0915 Methylated-DNA--protein-cysteinemethyltransferasechromosome CDS977066 1056 - 0.349432
NA RF_0976 Transposasechromosome CDS1034600 444 + 0.367117
NA RF_0880 Transposasechromosome CDS937381 243 - 0.312757
NA RF_0926 Transposasechromosome CDS986311 243 - 0.300412
NA RF_0424 Excinuclease ABC, C subunit, N-terminalchromosome CDS451474 273 + 0.260073
NA RF_0998 Transposasechromosome CDS1059920 954 + 0.336478
NA RF_1053 Transposasechromosome CDS1112045 243 - 0.312757
NA RF_0597 Alkylated DNA repair proteinchromosome CDS641501 567 + 0.301587
NA RF_0977 Transposition helper protein, OrfBchromosome CDS1035040 801 + 0.36829
NA RF_0101 Transposasechromosome CDS114492 753 + 0.341301
NA RF_p19 unknownpRF CDS17327 1191 - 0.342569
NA RF_0065 Transposasechromosome CDS66725 921 + 0.331162
NA RF_1181 Transposasechromosome CDS1251058 243 - 0.312757
NA RF_p54 TransposasepRF CDS50210 693 - 0.329004
NA RF_p67 TransposasepRF CDS61171 180 + 0.272222
NA RF_0049 Transposasechromosome CDS51062 582 + 0.328179
NA RF_p31 TransposasepRF CDS31276 243 + 0.312757
NA RF_pd58 TransposasepRFdelta CDS30891 300 - 0.34
NA RF_p58 TransposasepRF CDS54457 300 - 0.34
NA RF_0138 Site-specific DNA methylasechromosome CDS154861 318 - 0.327044
NA RF_0838 unknownchromosome CDS884506 1683 + 0.246583
NA RF_0930 Transposasechromosome CDS990157 954 + 0.333333
NA RF_0920 Transposasechromosome CDS981720 954 + 0.333333
NA RF_1351 unknownchromosome CDS1437968 639 - 0.244131
NA RF_0999 Transposasechromosome CDS1060948 243 + 0.304527
NA RF_0435 Transposasechromosome CDS462691 612 + 0.359477
NA RF_0102 Transposasechromosome CDS115319 162 + 0.290123
NA RF_1392 Transposasechromosome CDS1476089 243 - 0.312757
NA RF_0388 Transposition helper protein, OrfBchromosome CDS412324 801 - 0.36829
NA RF_0112 unknownchromosome CDS125851 4071 - 0.29747
NA RF_0865 N6-adenine-specific methylasechromosome CDS919810 591 + 0.316413
NA RF_1340 Uracil-DNA glycosylase, family 4chromosome CDS1426418 789 - 0.35488
NA RF_0588 Transposasechromosome CDS628603 954 - 0.333333
NA RF_pd48 TransposasepRFdelta CDS22835 870 - 0.351724
NA RF_1071 Transposasechromosome CDS1139088 243 - 0.304527
NA RF_0362 unknownchromosome CDS380508 1455 + 0.261168
NA RF_0535 Conserved hypothetical proteinchromosome CDS571708 465 + 0.31828
NA RF_pd55 TransposasepRFdelta CDS27405 507 - 0.329389
NA RF_0159 Transposasechromosome CDS175561 243 + 0.312757
NA RF_p30 TransposasepRF CDS30449 753 + 0.341301
NA RF_0927 Transposasechromosome CDS986628 954 - 0.33543
NA RF_0624 unknownchromosome CDS666446 2571 - 0.288604
NA RF_0105 Transposasechromosome CDS117487 243 - 0.312757
NA RF_p48 TransposasepRF CDS46401 870 - 0.351724
NA RF_0804 unknownchromosome CDS852978 609 + 0.262726
NA RF_0551 Putative lyasechromosome CDS588483 876 - 0.317352
NA RF_1182 Transposasechromosome CDS1251375 954 - 0.33543
NA RF_pd66 Site-specific recombinasespRFdelta CDS36726 549 + 0.338798
NA RF_pd57 TransposasepRFdelta CDS30157 738 - 0.334688
NA RF_p57 TransposasepRF CDS53723 738 - 0.334688
NA RF_1054 Transposasechromosome CDS1112362 753 - 0.341301
NA RF_0320 Transposasechromosome CDS336125 954 + 0.33543
NA RF_pd53 DNA polymerase III, epsilon subunit-like proteinpRFdelta CDS26075 543 - 0.333333
NA RF_0199 unknownchromosome CDS215882 285 + 0.263158
NA RF_1072 Transposasechromosome CDS1139405 753 - 0.338645
NA RF_0307 Transposasechromosome CDS322108 444 - 0.367117
NA RF_0137 Site-specific DNA methylasechromosome CDS154251 516 - 0.317829
NA RF_p63 unknownpRF CDS58107 576 - 0.383681
NA RF_0342 Transposasechromosome CDS362753 612 + 0.357843
NA RF_1058 Excinuclease ABC, C subunit, N-terminalchromosome CDS1119972 303 - 0.30363
NA RF_0392 Transposasechromosome CDS415778 954 + 0.336478
NA RF_0975 Transposasechromosome CDS1034014 612 + 0.357843
NA RF_0574 unknownchromosome CDS610000 822 + 0.256691
NA RF_0158 Transposasechromosome CDS174533 954 + 0.33543
NA RF_0174 ATP-dependent helicasechromosome CDS193206 2448 - 0.3125
NA RF_0436 Transposasechromosome CDS463277 444 + 0.367117
NA RF_p64 TransposasepRF CDS58768 309 + 0.294498
NA RF_0389 Transposasechromosome CDS413121 444 - 0.367117
NA RF_p34 DNA polymerase III, epsilon subunit-like proteinpRF CDS33232 1134 - 0.323633
NA RF_0881 Transposasechromosome CDS937698 954 - 0.33543
NA RF_0921 Transposasechromosome CDS982748 243 + 0.304527
NA RF_1350 unknownchromosome CDS1437005 954 - 0.257862
NA RF_0712 unknownchromosome CDS771038 1257 + 0.292761
NA RF_0051 Transposasechromosome CDS52458 444 - 0.367117
dam RF_0123 Site-specific DNA adenine methylasechromosome CDS141399 900 + 0.321111
dat RF_0916 Methylated-DNA--protein-cysteinemethyltransferasechromosome CDS978211 507 - 0.339251
dinJ RF_1373 DNA-damage-inducible protein Jchromosome CDS1461306 264 + 0.382576
dnaA RF_0364 Chromosomal replication initiator protein DnaAchromosome CDS382683 1392 - 0.338362
dnaB RF_0860 Replicative DNA helicasechromosome CDS912865 1485 + 0.33468
dnaE RF_1244 DNA polymerase III alpha chainchromosome CDS1310602 3624 - 0.355684
dnaG RF_1358 DNA primasechromosome CDS1448827 1788 - 0.302573
dnaN RF_0649 DNA polymerase III beta chainchromosome CDS696880 1140 + 0.320175
dnaQ RF_0176 DNA polymerase III epsilon chainchromosome CDS196606 690 - 0.342029
dnaX RF_1364 DNA polymerase III gamma and tau chainschromosome CDS1454420 1566 + 0.311622
dprA RF_0531 Putatie DNA processing protein DprAchromosome CDS566795 1149 - 0.334204
gyrA RF_1055 DNA gyrase subunit Achromosome CDS1113461 2721 - 0.385153
gyrB RF_0947 DNA gyrase subunit Bchromosome CDS1004956 2427 - 0.372888
himA RF_0201 Integration host factor alpha-subunitchromosome CDS216818 288 + 0.263889
himD RF_0767 Integration host factor beta-subunitchromosome CDS824822 243 + 0.27572
holA RF_1078 DNA polymerase III, delta subunitchromosome CDS1145074 966 - 0.26294
holB RF_1107 DNA polymerase III delta subunitchromosome CDS1176477 795 - 0.264151
hupA RF_1108 DNA-binding protein HUchromosome CDS1177570 333 - 0.321321
ligA RF_0192 DNA ligase, NAD-dependentchromosome CDS208171 2121 + 0.351249
mfd RF_0367 Transcription-repair coupling factorchromosome CDS384963 3429 + 0.324876
mpg RF_0560 DNA-3-methyladenine glycosidasechromosome CDS599076 534 - 0.353933
mutL RF_1387 DNA mismatch repair protein MutLchromosome CDS1471875 1830 - 0.356831
mutM RF_0242 Formamidopyrimidine-DNA glycosidasechromosome CDS269457 831 - 0.305656
mutS RF_0483 DNA mismatch repair protein MutSchromosome CDS516886 2661 - 0.337091
nth RF_1191 Endonuclease IIIchromosome CDS1258940 642 + 0.323988
nudH RF_1051 (Di)nucleoside polyphosphate hydrolasechromosome CDS1110575 486 + 0.353909
parC RF_0107 Topoisomerase IV subunit Achromosome CDS118779 2214 - 0.366305
parE RF_0988 DNA topoisomerase IV, B subunitchromosome CDS1048243 1989 + 0.339869
polA RF_1239 DNA polymerase I (POL I)chromosome CDS1303312 2769 + 0.344529
priA RF_0858 Primosomal protein N'chromosome CDS910034 1947 - 0.333847
radC RF_1310 DNA repair protein RadCchromosome CDS1398522 468 + 0.301282
recA RF_1221 RecA proteinchromosome CDS1285898 1032 + 0.386628
recF RF_0035 DNA replication and repair protein RecFchromosome CDS36903 1263 - 0.325416
recG RF_0378 ATP-dependent DNA helicase RecGchromosome CDS399211 2124 + 0.373823
recJ RF_0763 Single-stranded-DNA-specific exonuclease RecJchromosome CDS818476 1764 + 0.336168
recN RF_1089 DNA repair protein RecNchromosome CDS1156040 1641 + 0.330286
recO RF_0868 DNA repair protein RecOchromosome CDS922291 714 + 0.277311
recR RF_0672 Recombination protein RecRchromosome CDS719650 624 + 0.346154
relB1 RF_0335 DNA-damage-inducible protein Jchromosome CDS354668 261 - 0.348659
relB2 RF_0827 DNA-damage-inducible protein Jchromosome CDS874049 273 - 0.318681
rnhA RF_0180 Ribonuclease Hchromosome CDS200109 459 + 0.337691
rnhB RF_1061 Ribonuclease HIIchromosome CDS1122962 582 - 0.331615
ruvA RF_0604 Holliday junction DNA helicase RuvAchromosome CDS646715 612 + 0.341503
ruvB RF_0606 Holliday junction DNA helicase RuvBchromosome CDS648360 1029 + 0.377065
ruvC RF_1173 Crossover junction endodeoxyribonuclease RuvCchromosome CDS1244603 471 - 0.37155
sca2 RF_0067 Cell surface antigen Sca2chromosome CDS68331 4815 - 0.30135
ssb RF_1325 Single-stranded DNA-binding proteinchromosome CDS1411431 459 + 0.342048
tatD RF_0236 Putative deoxyribonuclease, hydrolasechromosome CDS263371 873 + 0.34937
tnpR RF_p32 TnpR resolvasepRF CDS32042 441 + 0.378685
topA RF_0530 DNA topoisomerase Ichromosome CDS564265 2331 - 0.350493
uvrA RF_1324 Excinuclease ABC subunit Achromosome CDS1408459 2868 - 0.359484
uvrB RF_1060 Excinuclease ABC subunit Bchromosome CDS1120812 1986 + 0.383686
uvrC RF_0912 Excinuclease ABC subunit Cchromosome CDS973615 1929 - 0.355625
uvrD RF_0687 DNA helicase IIchromosome CDS733515 1965 + 0.339949
xerC RF_1295 Tyrosine recombinase XerCchromosome CDS1379060 918 - 0.301743
xerD RF_0571 Tyrosine recombinase XerDchromosome CDS607594 921 + 0.326819
xseA RF_0253 Exodeoxyribonuclease VII, large subunitchromosome CDS280857 1389 - 0.318215
xseB RF_0557 Exodeoxyribonuclease VII small subunitchromosome CDS597824 243 + 0.325103
xth1 RF_1021 Exodeoxyribonuclease IIIchromosome CDS1081982 804 - 0.329602
xth2 RF_0250 Exodeoxyribonuclease IIIchromosome CDS278385 783 - 0.295019