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2024-05-19 01:29:44

Gene list

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COG category: Replication, recombination and repair
Organism: Lactobacillus acidophilus NCFM, NCFM

Number of genes found: 130

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Lactobacillus acidophilus NCFM, NCFM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LBA1123 DNA topoisomerase IV subunit Cchromosome CDS1099631 2451 + 0.331293
NA LBA0477 putative DNA methyltransferasechromosome CDS470105 870 + 0.265517
NA LBA1160 endonuclease IIIchromosome CDS1137845 630 - 0.320635
NA LBA0442 phage related helicasechromosome CDS420860 2595 + 0.304432
NA LBA1648 DNA polymerase IIIchromosome CDS1668880 957 - 0.349007
NA LBA0113 putative 3-methyladenine DNA glycosylasechromosome CDS110225 633 - 0.402844
NA LBA1721 transposasechromosome CDS1756652 360 - 0.372222
NA LBA0127 transposasechromosome CDS121538 1242 - 0.36715
NA LBA1077 chromosome segregation helicasechromosome CDS1056909 1290 + 0.358915
NA LBA0835 hypothetical proteinchromosome CDS817676 552 + 0.307971
NA LBA0548 putative site-specific recombinasechromosome CDS536237 534 - 0.397004
NA LBA0029 putative integrasechromosome CDS25928 1236 + 0.309871
NA LBA0614 transposasechromosome CDS600548 1383 - 0.366594
NA LBA0871 DNA alkylation repair enzymechromosome CDS851519 477 + 0.33543
NA LBA1570 transposasechromosome CDS1563456 543 + 0.348066
NA LBA1475 transposasechromosome CDS1461095 1242 + 0.36876
NA LBA0053 hypothetical proteinchromosome CDS48869 219 - 0.310502
NA LBA0008 single-stranded DNA-binding proteinchromosome CDS9275 519 + 0.375723
NA LBA0443 hypothetical proteinchromosome CDS423467 285 + 0.266667
NA LBA0155 DNA-3-methyladenine glycosidasechromosome CDS146691 573 - 0.356021
NA LBA0617 ATP-dependent RNA helicase, DEAD-DEAH boxchromosome CDS604098 1239 + 0.332526
NA LBA0325 integrasechromosome CDS308676 1053 - 0.316239
NA LBA0383 DNA polymerase III, delta subunitchromosome CDS357050 858 + 0.325175
NA LBA0478 methylasechromosome CDS471076 684 + 0.334795
NA LBA0116 putative methyltransferasechromosome CDS112312 171 - 0.327485
NA LBA1591 phosphoesterasechromosome CDS1584246 1212 - 0.325908
NA LBA0416 RNA helicasechromosome CDS391744 1362 + 0.354626
NA LBA0981 DNA topoisomerase Ichromosome CDS954712 2118 + 0.360718
NA LBA1145 phage integrase-recombinasechromosome CDS1118476 1029 + 0.329446
NA LBA0970 DNA-binding protein II HBchromosome CDS944734 276 + 0.413043
NA LBA1723 transposasechromosome CDS1757984 1227 + 0.361043
NA LBA1155 hypothetical proteinchromosome CDS1131971 1125 - 0.344889
NA LBA0419 hypothetical proteinchromosome CDS396304 429 + 0.368298
NA LBA0979 Ribonuclease HIIchromosome CDS952980 753 + 0.338645
NA LBA0475 restriction endonucleasechromosome CDS463844 4506 + 0.320684
NA LBA1569 putative transposase, IS605-tnpbchromosome CDS1562841 606 + 0.369637
NA LBA0058 putative phage DEAD box family helicasechromosome CDS54086 2835 + 0.322751
NA LBA1122 DNA topoisomerase IV subunitBchromosome CDS1097656 1947 + 0.370313
NA LBA1299 transposasechromosome CDS1278333 1383 + 0.366594
NA LBA0547 putative site-specific recombinasechromosome CDS535203 1017 - 0.417896
NA LBA1282 DNA polymerasechromosome CDS1260798 660 - 0.333333
NA LBA0549 putative site-specific recombinasechromosome CDS536763 930 - 0.396774
NA LBA0484 integrasechromosome CDS476393 1203 + 0.318371
NA LBA1533 transposasechromosome CDS1526307 711 - 0.337553
NA LBA1261 DNA polymerase III alpha chainchromosome CDS1237627 4314 - 0.3535
NA LBA1868 transposasechromosome CDS1877213 1383 + 0.367317
NA LBA0826 hypothetical proteinchromosome CDS808441 1680 + 0.27381
NA LBA1002 excinuclease subunit Achromosome CDS978446 2535 + 0.351085
NA LBA0758 prophage DNA packaging protein NU1chromosome CDS747080 225 - 0.431111
NA LBA0077 transposasechromosome CDS77542 1707 - 0.385472
NA LBA0840 putative DNA polymerase III, delta subunitchromosome CDS822738 990 + 0.284848
NA LBA0819 putative ADP-ribose pyrophosphatasechromosome CDS801415 570 + 0.354386
NA LBA0825 exodeoxyribonuclease V alpha chainchromosome CDS806024 2355 + 0.326539
NA LBA1420 predicted transposasechromosome CDS1408346 1164 + 0.412371
NA LBA1907 transposasechromosome CDS1916654 1509 + 0.388999
NA LBA0670 competence proteinchromosome CDS656436 1284 + 0.318536
NA LBA1954 transposasechromosome CDS1965076 1026 + 0.358674
NA LBA1487 transposase, is605-tnpbchromosome CDS1475253 1158 - 0.348877
NA LBA0838 competence proteinchromosome CDS819801 684 + 0.333333
NA LBA0870 DNA repairchromosome CDS851303 177 + 0.299435
NA LBA1118 hypothetical proteinchromosome CDS1094260 225 - 0.297778
NA LBA1094 putative ATPasechromosome CDS1076310 2061 + 0.291606
NA LBA0414 DNA-damage-inducible proteinchromosome CDS389494 1239 + 0.34544
NA LBA1722 transposasechromosome CDS1756974 741 - 0.346829
NA LBA0740 putative modification methylasechromosome CDS726238 1002 + 0.322355
NA LBA1881 transposasechromosome CDS1894068 894 + 0.38255
NA LBA0703 uracil-DNA glycosylasechromosome CDS697871 699 + 0.350501
NA LBA0893 integrasechromosome CDS870713 951 - 0.3449
NA LBA0545 hypothetical proteinchromosome CDS533872 588 + 0.389456
NA LBA0867 hypothetical proteinchromosome CDS849283 804 + 0.269901
NA LBA1565 putative DNA-damage-inducible protein Jchromosome CDS1558416 309 - 0.352751
NA LBA0215 putative primase likechromosome CDS212209 588 + 0.362245
NA LBA0231 hypothetical proteinchromosome CDS228340 405 + 0.333333
NA LBA0376 DNA polymerase III (DNA directed ) gamma-tauchromosome CDS351479 1791 + 0.353992
NA LBA0955 DNA polymerase III alpha-chainchromosome CDS929352 3108 + 0.333977
NA LBA0764 integrasechromosome CDS749261 1071 + 0.328665
NA LBA0267 ATP-dependent RNA helicase-like proteinchromosome CDS257801 1488 + 0.384409
NA LBA0333 hypothetical proteinchromosome CDS317178 372 + 0.290323
NA LBA0255 S-methyltransferasechromosome CDS247728 462 + 0.404762
NA LBA0784 chromosomal segregation helicasechromosome CDS767252 1320 - 0.37803
NA LBA1464 transposasechromosome CDS1447281 1158 - 0.357513
NA LBA0214 hypothetical proteinchromosome CDS211455 768 + 0.354167
NA LBA1197 DNA primasechromosome CDS1172137 1851 - 0.340897
NA LBA0706 DNA polymerase III alpha chainchromosome CDS700124 534 - 0.344569
NA LBA0980 DNA processing protein chainAchromosome CDS953794 858 + 0.317016
addA LBA1165 ATP-dependent exonuclease subunit Achromosome CDS1143864 3624 - 0.306291
addB LBA1166 ATP-dependent exonuclease subunit Bchromosome CDS1147490 3483 - 0.300316
dinG LBA1164 ATP-dependent DNA helicasechromosome CDS1141057 2784 - 0.322917
dnaA LBA0001 chromosomal replication initiator proteinchromosome CDS31 1368 + 0.355994
dnaB LBA0013 replicative DNA helicasechromosome CDS12752 1395 + 0.383513
dnaB LBA1545 chromosome replication initiationchromosome CDS1534927 1341 - 0.342282
dnaD LBA1161 initiation of chromosome replication proteinchromosome CDS1138476 645 - 0.296124
dnaI LBA1544 primosome component (helicase loader)chromosome CDS1534009 909 - 0.352035
dnaN LBA0002 DNA polymerase III, beta chainchromosome CDS1576 1131 + 0.334218
dnlJ LBA0529 DNA ligasechromosome CDS517628 2007 + 0.374689
exoA LBA1699 exodeoxyribonucleasechromosome CDS1721387 762 - 0.35958
exoA LBA0056 exodeoxyribonuclease Achromosome CDS51696 828 + 0.355072
gyrA LBA0006 DNA gyrase subunit Achromosome CDS6258 2475 + 0.385455
gyrB LBA0005 DNA gyrase subunit Bchromosome CDS4283 1965 + 0.390331
hexA LBA0408 DNA mismatch repairchromosome CDS381484 2571 + 0.357837
mutL LBA0409 DNA mismatch repair proteinchromosome CDS384057 1896 + 0.333333
mutM LBA1549 formamidopyrimidine-DNA glycosylase Fpgchromosome CDS1537339 831 - 0.362214
mutS LBA0421 mismatch repair proteinchromosome CDS397104 2358 + 0.351993
mutT LBA0465 putative nudix family proteinchromosome CDS453002 411 + 0.343066
mutT LBA1193 putative mutator proteinchromosome CDS1169865 441 + 0.319728
mutT LBA0441 putative mutator proteinchromosome CDS420438 423 + 0.364066
pcrA LBA0528 ATP-dependent helicasechromosome CDS515355 2241 + 0.367693
polA LBA1550 DNA polymerase Ichromosome CDS1538178 2661 - 0.363397
priA LBA1323 primosomal replication factorchromosome CDS1301262 2400 - 0.334167
radC LBA0797 DNA repair proteinchromosome CDS780874 624 + 0.338141
recA LBA0666 recombination proteinchromosome CDS651595 1092 + 0.39652
recF LBA0004 DNA repair and genetic recombination proteinchromosome CDS3155 1128 + 0.348404
recG LBA1309 ATP-dependent DNA helicasechromosome CDS1289072 2037 - 0.340206
recJ LBA1243 single-stranded-DNA-specific exonucleasechromosome CDS1218486 2274 - 0.330255
recM LBA0379 recombinational DNA repair proteinchromosome CDS355138 600 + 0.351667
recN LBA1327 DNA repair proteinchromosome CDS1305094 1683 - 0.346999
recO LBA1200 DNA repair proteinchromosome CDS1177242 753 - 0.325365
recQ LBA1000 ATP-dependent DNA helicasechromosome CDS976064 1773 + 0.329949
ruvA LBA0410 helicase Holliday junctionchromosome CDS385952 588 + 0.362245
ruvB LBA0411 helicase Holliday junctionchromosome CDS386551 1050 + 0.387619
tnpB LBA0377 transposasechromosome CDS353447 1158 + 0.355786
trcF LBA0273 transcriptional repair coupling factorchromosome CDS263464 3498 + 0.341338
uvrA LBA0689 excinuclease subunit Achromosome CDS680920 2841 + 0.357269
uvrB LBA0688 excinuclease ABC (subunit B)chromosome CDS678882 2052 + 0.366959
uvrC LBA0946 excinuclease ABC subunit Cchromosome CDS919926 1803 + 0.332224
xerC LBA0983 integrase-recombinasechromosome CDS958172 909 + 0.330033
xerD LBA0959 integrase-recombinasechromosome CDS936390 906 + 0.336645
xerD LBA0991 putative integrase-recombinasechromosome CDS965006 813 - 0.303813
xseA LBA1331 exodeoxyribonuclease VII (large subunit) EX7Lchromosome CDS1308695 1368 - 0.350146
xseB LBA1330 exodeoxyribonuclease VII (small subunit) EX7Schromosome CDS1308472 243 - 0.312757