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2024-05-25 09:54:03

Gene list

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COG category: Replication, recombination and repair
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 145

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Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SPOA0091 IS3 family transposase orfASubName: Full=IS3 family transposase orfA; megaplasmid CDS92045 309 - 0.608414
NA SPOA0302 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; megaplasmid CDS331140 1047 + 0.69341
NA SPO3460 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3663584 360 - 0.613889
NA SPO1652 transposase, truncationSubName: Full=Transposase, truncation; chromosome CDS1756358 573 + 0.603839
NA SPO0749 conserved domain proteinSubName: Full=Uncharacterized protein; chromosome CDS783082 570 - 0.615789
NA SPO0373 helicase, ATP-dependent, putativeSubName: Full=Helicase, ATP-dependent, putative; chromosome CDS387521 1398 + 0.654506
NA SPO0353 NnrU family proteinSubName: Full=NnrU family protein; chromosome CDS367011 555 + 0.646847
NA SPO3078 DNA processing protein DprA, putativeSubName: Full=DNA processing protein DprA, putative; chromosome CDS3287129 1149 + 0.691906
NA SPO0628 transposase, degenerateSubName: Full=Transposase, degenerate; chromosome CDS648529 516 - 0.581395
NA SPO3541 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS3751644 984 - 0.681911
NA SPO2731 ISSpo7, transposaseSubName: Full=ISSpo7, transposase; chromosome CDS2918831 570 + 0.614035
NA SPO1233 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1297126 3384 + 0.537234
NA SPO0108 transposase, truncationSubName: Full=Transposase, truncation; chromosome CDS112680 273 - 0.589744
NA SPO0400 conserved hypothetical proteinRecName: Full=UPF0102 protein SPO0400; chromosome CDS413243 372 + 0.639785
NA SPO2742 hydrolase, TatD familySubName: Full=Hydrolase, TatD family; chromosome CDS2934041 816 + 0.678922
NA SPO0629 ISSpo3, transposaseSubName: Full=ISSpo3, transposase; chromosome CDS650052 894 - 0.551454
NA SPO2612 DNA-binding protein HU, putative chromosome CDS2766944 276 - 0.601449
NA SPO1766 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1885036 453 + 0.655629
NA SPO0968 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS1020068 459 - 0.673203
NA SPO3738 methyltransferase, putativeSubName: Full=Methyltransferase, putative; chromosome CDS3949791 561 + 0.695187
NA SPOA0305 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS335100 690 + 0.669565
NA SPO3279 NUDIX domain proteinSubName: Full=NUDIX domain protein; chromosome CDS3477706 450 - 0.637778
NA SPO0547 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS544720 534 - 0.642322
NA SPO0950 uracil-DNA glycosylase, putativeSubName: Full=Uracil-DNA glycosylase, putative; chromosome CDS1001795 627 + 0.674641
NA SPO2452 DNA polymerase III, chi subunit, putativeSubName: Full=DNA polymerase III, chi subunit, putative; chromosome CDS2604620 465 - 0.722581
NA SPO2691 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2843069 1107 - 0.676603
NA SPO3280 DNA polymerase IV, putativeRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS3478224 1263 + 0.669042
NA SPOA0082 conserved hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS77422 1842 - 0.523887
NA SPO2798 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2985719 687 + 0.668122
NA SPOA0081 hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS76107 1326 - 0.524887
NA SPO1417 helicase, putativeSubName: Full=Helicase, putative; chromosome CDS1487460 2880 + 0.676042
NA SPO1036 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS1083132 1245 + 0.595984
NA SPO3462 flagellar hook-length control proteinSubName: Full=Flagellar hook-length control protein; chromosome CDS3664298 2478 + 0.640839
NA SPO3833 ATP-dependent RNA helicase, DEAD/DEAH box family chromosome CDS4048549 2130 + 0.682629
NA SPO2408 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2559208 636 - 0.591195
NA SPO0803 NUDIX domain proteinSubName: Full=NUDIX domain protein; EC=6.-.-.-; chromosome CDS839256 468 - 0.623932
NA SPO0023 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS22329 453 - 0.668874
NA SPO1222 site-specific recombinase, resolvase familySubName: Full=Site-specific recombinase, resolvase family; chromosome CDS1283506 1485 - 0.558923
NA SPO3425 exodeoxyribonuclease III, putativeSubName: Full=Exodeoxyribonuclease III, putative; chromosome CDS3628506 789 - 0.629911
NA SPO1059 serine/threonine protein kinaseSubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; chromosome CDS1110768 2112 + 0.620739
NA SPO3512 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3722616 852 + 0.652582
NA SPO3311 ADA regulatory protein, putativeSubName: Full=ADA regulatory protein, putative; chromosome CDS3508498 1074 + 0.691806
NA SPO3053 NUDIX domain proteinSubName: Full=NUDIX domain protein; chromosome CDS3265164 501 - 0.654691
NA SPO3873 ATP-dependent DNA helicase, UvrD/Rep familySubName: Full=ATP-dependent DNA helicase, UvrD/Rep family; chromosome CDS4087690 3357 + 0.672029
NA SPO2326 hypothetical protein chromosome CDS2461847 690 - 0.650725
NA SPOA0322 conserved hypothetical proteinSubName: Full=Uncharacterized protein; megaplasmid CDS361284 1119 + 0.690795
NA SPO2159 radical SAM domain proteinSubName: Full=Radical SAM domain protein; chromosome CDS2296512 1185 - 0.675106
NA SPO0671 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS699587 1374 - 0.725619
NA SPO2759 hydrolase, NUDIX familySubName: Full=Hydrolase, NUDIX family; chromosome CDS2949152 708 + 0.682203
NA SPO2990 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3187214 1128 + 0.66844
NA SPO1049 DNA methylase, C-5 cytosine-specific familySubName: Full=DNA methylase, C-5 cytosine-specific family; chromosome CDS1096391 1122 + 0.551693
NA SPO2405 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS2555372 660 - 0.628788
NA SPO2250 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2393491 3927 - 0.654189
NA SPO3614 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3818863 120 - 0.625
NA SPO3900 thermonuclease family proteinSubName: Full=Thermonuclease family protein; chromosome CDS2976302 567 - 0.603175
NA SPO3451 modification methylaseSubName: Full=Modification methylase; chromosome CDS3654996 1104 - 0.609601
NA SPO3196 DNA repair protein RecO, putativeRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS3409228 726 + 0.706612
NA SPOA0090 ISSpo7, transposaseSubName: Full=ISSpo7, transposase; megaplasmid CDS91354 570 + 0.614035
NA SPO1174 DNA helicase II, putative chromosome CDS1225205 2340 + 0.649573
NA SPO2722 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2903699 360 + 0.694444
NA SPO0445 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS456283 576 + 0.605903
NA SPO1118 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1174942 678 - 0.699115
NA SPO1927 site-specfic recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS2053837 1221 - 0.570025
NA SPO3872 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4084766 2928 + 0.695014
NA SPO1129 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1184211 663 - 0.628959
NA SPO1412 DNA modification methyltransferase domain proteinSubName: Full=DNA modification methyltransferase domain protein; chromosome CDS1482323 183 + 0.562842
NA SPO1219 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS1279111 1128 + 0.54344
NA SPO1047 RNA-dependent DNA polymerase, putativeSubName: Full=RNA-dependent DNA polymerase, putative; chromosome CDS1094205 969 + 0.478844
NA SPO0025 hydrolase, NUDIX family chromosome CDS23855 573 + 0.696335
NA SPO3674 ISSpo7, transposaseSubName: Full=ISSpo7, transposase; chromosome CDS3883357 570 + 0.614035
NA SPO0042 alkylated DNA repair protein, putativeSubName: Full=Alkylated DNA repair protein, putative; chromosome CDS41882 597 - 0.668342
NA SPO3632 conserved domain proteinSubName: Full=Uncharacterized protein; chromosome CDS3834910 312 + 0.637821
NA SPO2741 DNA polymerase III, delta prime subunit, putativeSubName: Full=DNA polymerase III, delta prime subunit, putative; chromosome CDS2932923 1122 + 0.721034
NA SPO2390 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS2537527 660 + 0.628788
NA SPO0515 ATPase, AAA familySubName: Full=ATPase, AAA family; chromosome CDS511341 1317 + 0.6735
NA SPO1807 exonuclease, DNA polymerase III, epsilon subunit familySubName: Full=Exonuclease, DNA polymerase III, epsilon subunit family; chromosome CDS1923541 1413 - 0.692852
NA SPO2407 ISSpo6, transposase orfBSubName: Full=ISSpo6, transposase orfB; chromosome CDS2557085 576 + 0.621528
NA SPO0335 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS345684 2559 + 0.686596
NA SPO3434 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3637592 1029 + 0.680272
NA SPO3578 ADA regulatory proteinSubName: Full=ADA regulatory protein; chromosome CDS3787295 852 - 0.678404
NA SPO0549 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS545732 507 - 0.682446
NA SPO0670 DNA polymerase III, alpha subunit, putativeRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS696285 3306 - 0.680278
NA SPO2350 conserved hypothetical protein TIGR00250RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS2491829 465 + 0.666667
NA SPOA0134 ISSpo7, transposaseSubName: Full=ISSpo7, transposase; megaplasmid CDS145949 570 + 0.615789
NA SPO1218 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS1277271 1590 - 0.546541
NA SPO0280 transposase, truncationSubName: Full=Transposase, truncation; chromosome CDS295170 168 + 0.60119
NA SPO2127 DNA-3-methyladenine glycosylase II, putativeSubName: Full=DNA-3-methyladenine glycosylase II, putative; chromosome CDS2259511 633 - 0.672986
NA SPO0479 ISSpo8, transposaseSubName: Full=ISSpo8, transposase; chromosome CDS483607 1068 + 0.553371
NA SPO0622 ISSpo1, transposaseSubName: Full=ISSpo1, transposase; chromosome CDS641833 1059 - 0.577904
NA SPOA0087 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; megaplasmid CDS85721 1203 - 0.616791
NA SPO3585 hydrolase, NUDIX family, NudH subfamilyRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS3792607 486 - 0.625514
dnaA SPO0149 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS164331 1407 + 0.605544
dnaB SPO2655 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS2809757 1491 + 0.64118
dnaE SPO0656 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS678963 3564 + 0.647306
dnaN SPO0150 DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS165999 1119 + 0.632708
dnaQ SPO3889 DNA polymerase III, epsilon subunitSubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS4103116 726 - 0.626722
dnaX SPO3550 DNA polymerase III, gamma and tau subunitsSubName: Full=DNA polymerase III, gamma and tau subunits; EC=2.7.7.7; chromosome CDS3759926 1752 + 0.680936
gyrA SPO2051 DNA gyrase, A subunit chromosome CDS2181848 2676 + 0.641629
gyrB SPO0155 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS170259 2418 + 0.632341
hrpB SPO0972 ATP-dependent helicase HrpBSubName: Full=ATP-dependent helicase HrpB; chromosome CDS1024037 2451 - 0.71277
hup SPO3744 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS3955186 276 - 0.652174
ihfA SPO2495 integration host factor, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS2644283 303 + 0.60066
ihfB SPO0804 integration host factor, beta subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS840121 285 + 0.6
ligA SPO1680 DNA ligase, NAD-dependentRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1786196 2220 + 0.662613
mfd SPO2074 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS2206464 3429 - 0.657335
mutL SPO3362 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS3561170 1866 - 0.681672
mutM SPO0146 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS161604 852 + 0.651408
mutS SPO0011 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS8822 2634 - 0.655277
mutT SPO0060 mutator mutT proteinSubName: Full=Mutator mutT protein; EC=3.6.1.-; chromosome CDS61973 399 + 0.626566
mutY SPO3448 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS3651203 1056 + 0.698864
nth SPO3581 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS3789415 645 + 0.607752
nucH SPO2854 thermonucleaseSubName: Full=Thermonuclease; EC=3.1.31.1; chromosome CDS3051366 444 + 0.664414
ogt SPO3134 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS3342125 453 - 0.666667
parC SPO0726 DNA topoisomerase IV, A subunitRecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS753492 2349 + 0.64155
parE SPO1253 DNA topoisomerase IV, B subunitRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1322648 1959 - 0.647269
phrB SPO1917 deoxyribodipyrimidine photolyaseSubName: Full=Deoxyribodipyrimidine photolyase; EC=4.1.99.3; chromosome CDS2037997 1446 + 0.683956
polA SPO3844 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS4058742 2802 + 0.638472
priA SPO3127 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS3335405 2211 - 0.690638
radC SPO0054 DNA repair protein RadCRecName: Full=UPF0758 protein SPO0054; chromosome CDS53600 675 + 0.622222
recA SPO2034 RecARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2161731 1044 - 0.6159
recF SPO0151 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS167177 1101 + 0.681199
recG SPO1681 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS1788412 2091 + 0.680057
recJ SPO1732 single-stranded-DNA-specific exonuclease RecJSubName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS1849853 1656 - 0.701087
recN SPO1207 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1260784 1650 + 0.718788
recQ SPO0107 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome CDS110244 2040 - 0.679902
recR SPO3569 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS3781123 597 - 0.681742
rhlE SPO1443 ATP-dependent RNA helicase RhlESubName: Full=ATP-dependent RNA helicase RhlE; chromosome CDS1513975 1416 - 0.659605
rnhA SPO3212 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS3421234 468 + 0.628205
rnhB SPO3452 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS3656206 705 - 0.62695
ruvA SPO3116 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS3326499 675 - 0.700741
ruvB SPO3115 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS3325427 1026 - 0.690058
ruvC SPO3117 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS3327170 498 - 0.658635
ssb SPO1637 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1741243 543 - 0.661142
tag SPO1900 DNA-3-methyladenine glycosylase ISubName: Full=DNA-3-methyladenine glycosylase I; EC=3.2.2.20; chromosome CDS2025682 609 - 0.65353
topA SPO3079 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS3288441 2643 + 0.641317
trgB SPO1920 tellurite resistance protein chromosome CDS2041159 1146 + 0.645724
udgA SPO0288 uracil-DNA glycosylaseSubName: Full=Uracil-DNA glycosylase; EC=3.2.2.-; chromosome CDS300846 786 + 0.684478
uvrA SPO2218 UvrABC system protein ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS2357532 2916 - 0.630315
uvrB SPO0545 UvrABC system protein BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS541827 2199 + 0.64302
uvrC SPO3637 UvrABC system protein CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS3837874 1872 - 0.637286
xerC SPO3130 tyrosine recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS3339313 921 + 0.687296
xerD SPO1632 tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS1735714 960 - 0.686458
xseA SPO1344 exodeoxyribonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1404325 1449 - 0.706694
xseB SPO0249 exodeoxyribonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS270485 219 - 0.607306
xth SPO2509 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS2656690 807 + 0.649318