TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-05 14:47:11

Gene list

Applied filters:

COG category: Replication, recombination and repair
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 145

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO2731 ISSpo7, transposasechromosome CDS2918831 570 + 0.614035
NA SPO3512 hypothetical proteinchromosome CDS3722616 852 + 0.652582
NA SPO0629 ISSpo3, transposasechromosome CDS650052 894 - 0.551454
NA SPO3311 ADA regulatory protein, putativechromosome CDS3508498 1074 + 0.691806
NA SPO2798 conserved hypothetical proteinchromosome CDS2985719 687 + 0.668122
NA SPO0547 conserved hypothetical proteinchromosome CDS544720 534 - 0.642322
NA SPO0400 conserved hypothetical proteinchromosome CDS413243 372 + 0.639785
NA SPO2722 hypothetical proteinchromosome CDS2903699 360 + 0.694444
NA SPO0373 helicase, ATP-dependent, putativechromosome CDS387521 1398 + 0.654506
NA SPO1174 DNA helicase II, putativechromosome CDS1225205 2340 + 0.649573
NA SPO1218 site-specific recombinase, phage integrase familychromosome CDS1277271 1590 - 0.546541
NA SPO2407 ISSpo6, transposase orfBchromosome CDS2557085 576 + 0.621528
NA SPO2990 conserved hypothetical proteinchromosome CDS3187214 1128 + 0.66844
NA SPO1129 conserved hypothetical proteinchromosome CDS1184211 663 - 0.628959
NA SPO0108 transposase, truncationchromosome CDS112680 273 - 0.589744
NA SPO0025 hydrolase, NUDIX familychromosome CDS23855 573 + 0.696335
NA SPO3585 hydrolase, NUDIX family, NudH subfamilychromosome CDS3792607 486 - 0.625514
NA SPO3196 DNA repair protein RecO, putativechromosome CDS3409228 726 + 0.706612
NA SPO2741 DNA polymerase III, delta prime subunit, putativechromosome CDS2932923 1122 + 0.721034
NA SPO0042 alkylated DNA repair protein, putativechromosome CDS41882 597 - 0.668342
NA SPOA0322 conserved hypothetical proteinmegaplasmid CDS361284 1119 + 0.690795
NA SPO2127 DNA-3-methyladenine glycosylase II, putativechromosome CDS2259511 633 - 0.672986
NA SPOA0134 ISSpo7, transposasemegaplasmid CDS145949 570 + 0.615789
NA SPO3451 modification methylasechromosome CDS3654996 1104 - 0.609601
NA SPOA0302 site-specific recombinase, phage integrase familymegaplasmid CDS331140 1047 + 0.69341
NA SPO2350 conserved hypothetical protein TIGR00250chromosome CDS2491829 465 + 0.666667
NA SPO2405 site-specific recombinase, phage integrase familychromosome CDS2555372 660 - 0.628788
NA SPO3280 DNA polymerase IV, putativechromosome CDS3478224 1263 + 0.669042
NA SPO2759 hydrolase, NUDIX familychromosome CDS2949152 708 + 0.682203
NA SPO2390 site-specific recombinase, phage integrase familychromosome CDS2537527 660 + 0.628788
NA SPO1219 site-specific recombinase, phage integrase familychromosome CDS1279111 1128 + 0.54344
NA SPOA0087 site-specific recombinase, phage integrase familymegaplasmid CDS85721 1203 - 0.616791
NA SPO0671 conserved hypothetical proteinchromosome CDS699587 1374 - 0.725619
NA SPO3674 ISSpo7, transposasechromosome CDS3883357 570 + 0.614035
NA SPO3053 NUDIX domain proteinchromosome CDS3265164 501 - 0.654691
NA SPO3462 flagellar hook-length control proteinchromosome CDS3664298 2478 + 0.640839
NA SPO2612 DNA-binding protein HU, putativechromosome CDS2766944 276 - 0.601449
NA SPO3460 conserved hypothetical proteinchromosome CDS3663584 360 - 0.613889
NA SPO3873 ATP-dependent DNA helicase, UvrD/Rep familychromosome CDS4087690 3357 + 0.672029
NA SPO1222 site-specific recombinase, resolvase familychromosome CDS1283506 1485 - 0.558923
NA SPO3279 NUDIX domain proteinchromosome CDS3477706 450 - 0.637778
NA SPO0950 uracil-DNA glycosylase, putativechromosome CDS1001795 627 + 0.674641
NA SPO3578 ADA regulatory proteinchromosome CDS3787295 852 - 0.678404
NA SPOA0090 ISSpo7, transposasemegaplasmid CDS91354 570 + 0.614035
NA SPO0353 NnrU family proteinchromosome CDS367011 555 + 0.646847
NA SPO3078 DNA processing protein DprA, putativechromosome CDS3287129 1149 + 0.691906
NA SPO0479 ISSpo8, transposasechromosome CDS483607 1068 + 0.553371
NA SPO0515 ATPase, AAA familychromosome CDS511341 1317 + 0.6735
NA SPOA0081 hypothetical proteinmegaplasmid CDS76107 1326 - 0.524887
NA SPO1036 site-specific recombinase, phage integrase familychromosome CDS1083132 1245 + 0.595984
NA SPO1412 DNA modification methyltransferase domain proteinchromosome CDS1482323 183 + 0.562842
NA SPO0445 conserved hypothetical proteinchromosome CDS456283 576 + 0.605903
NA SPO2159 radical SAM domain proteinchromosome CDS2296512 1185 - 0.675106
NA SPO2326 hypothetical proteinchromosome CDS2461847 690 - 0.650725
NA SPO3541 hydrolase, NUDIX familychromosome CDS3751644 984 - 0.681911
NA SPO3434 conserved hypothetical proteinchromosome CDS3637592 1029 + 0.680272
NA SPO0968 hydrolase, NUDIX familychromosome CDS1020068 459 - 0.673203
NA SPO1118 conserved hypothetical proteinchromosome CDS1174942 678 - 0.699115
NA SPO3872 conserved hypothetical proteinchromosome CDS4084766 2928 + 0.695014
NA SPO3900 thermonuclease family proteinchromosome CDS2976302 567 - 0.603175
NA SPO1652 transposase, truncationchromosome CDS1756358 573 + 0.603839
NA SPO2250 conserved hypothetical proteinchromosome CDS2393491 3927 - 0.654189
NA SPO0622 ISSpo1, transposasechromosome CDS641833 1059 - 0.577904
NA SPO0803 NUDIX domain proteinchromosome CDS839256 468 - 0.623932
NA SPO1047 RNA-dependent DNA polymerase, putativechromosome CDS1094205 969 + 0.478844
NA SPO1059 serine/threonine protein kinasechromosome CDS1110768 2112 + 0.620739
NA SPO3614 hypothetical proteinchromosome CDS3818863 120 - 0.625
NA SPO2691 conserved hypothetical proteinchromosome CDS2843069 1107 - 0.676603
NA SPO0335 conserved hypothetical proteinchromosome CDS345684 2559 + 0.686596
NA SPOA0305 hypothetical proteinmegaplasmid CDS335100 690 + 0.669565
NA SPO3425 exodeoxyribonuclease III, putativechromosome CDS3628506 789 - 0.629911
NA SPO3833 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS4048549 2130 + 0.682629
NA SPO2452 DNA polymerase III, chi subunit, putativechromosome CDS2604620 465 - 0.722581
NA SPO2408 hypothetical proteinchromosome CDS2559208 636 - 0.591195
NA SPO1927 site-specfic recombinase, phage integrase familychromosome CDS2053837 1221 - 0.570025
NA SPO0280 transposase, truncationchromosome CDS295170 168 + 0.60119
NA SPO1766 conserved hypothetical proteinchromosome CDS1885036 453 + 0.655629
NA SPO0549 conserved hypothetical proteinchromosome CDS545732 507 - 0.682446
NA SPO1049 DNA methylase, C-5 cytosine-specific familychromosome CDS1096391 1122 + 0.551693
NA SPO3738 methyltransferase, putativechromosome CDS3949791 561 + 0.695187
NA SPO0023 hydrolase, NUDIX familychromosome CDS22329 453 - 0.668874
NA SPO0749 conserved domain proteinchromosome CDS783082 570 - 0.615789
NA SPO1807 exonuclease, DNA polymerase III, epsilon subunit familychromosome CDS1923541 1413 - 0.692852
NA SPO0628 transposase, degeneratechromosome CDS648529 516 - 0.581395
NA SPO3632 conserved domain proteinchromosome CDS3834910 312 + 0.637821
NA SPOA0082 conserved hypothetical proteinmegaplasmid CDS77422 1842 - 0.523887
NA SPOA0091 IS3 family transposase orfAmegaplasmid CDS92045 309 - 0.608414
NA SPO1233 hypothetical proteinchromosome CDS1297126 3384 + 0.537234
NA SPO2742 hydrolase, TatD familychromosome CDS2934041 816 + 0.678922
NA SPO0670 DNA polymerase III, alpha subunit, putativechromosome CDS696285 3306 - 0.680278
NA SPO1417 helicase, putativechromosome CDS1487460 2880 + 0.676042
dnaA SPO0149 chromosomal replication initiator protein DnaAchromosome CDS164331 1407 + 0.605544
dnaB SPO2655 replicative DNA helicasechromosome CDS2809757 1491 + 0.64118
dnaE SPO0656 DNA polymerase III, alpha subunitchromosome CDS678963 3564 + 0.647306
dnaN SPO0150 DNA polymerase III, beta subunitchromosome CDS165999 1119 + 0.632708
dnaQ SPO3889 DNA polymerase III, epsilon subunitchromosome CDS4103116 726 - 0.626722
dnaX SPO3550 DNA polymerase III, gamma and tau subunitschromosome CDS3759926 1752 + 0.680936
gyrA SPO2051 DNA gyrase, A subunitchromosome CDS2181848 2676 + 0.641629
gyrB SPO0155 DNA gyrase, B subunitchromosome CDS170259 2418 + 0.632341
hrpB SPO0972 ATP-dependent helicase HrpBchromosome CDS1024037 2451 - 0.71277
hup SPO3744 DNA-binding protein HUchromosome CDS3955186 276 - 0.652174
ihfA SPO2495 integration host factor, alpha subunitchromosome CDS2644283 303 + 0.60066
ihfB SPO0804 integration host factor, beta subunitchromosome CDS840121 285 + 0.6
ligA SPO1680 DNA ligase, NAD-dependentchromosome CDS1786196 2220 + 0.662613
mfd SPO2074 transcription-repair coupling factorchromosome CDS2206464 3429 - 0.657335
mutL SPO3362 DNA mismatch repair protein MutLchromosome CDS3561170 1866 - 0.681672
mutM SPO0146 formamidopyrimidine-DNA glycosylasechromosome CDS161604 852 + 0.651408
mutS SPO0011 DNA mismatch repair protein MutSchromosome CDS8822 2634 - 0.655277
mutT SPO0060 mutator mutT proteinchromosome CDS61973 399 + 0.626566
mutY SPO3448 A/G-specific adenine glycosylasechromosome CDS3651203 1056 + 0.698864
nth SPO3581 endonuclease IIIchromosome CDS3789415 645 + 0.607752
nucH SPO2854 thermonucleasechromosome CDS3051366 444 + 0.664414
ogt SPO3134 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS3342125 453 - 0.666667
parC SPO0726 DNA topoisomerase IV, A subunitchromosome CDS753492 2349 + 0.64155
parE SPO1253 DNA topoisomerase IV, B subunitchromosome CDS1322648 1959 - 0.647269
phrB SPO1917 deoxyribodipyrimidine photolyasechromosome CDS2037997 1446 + 0.683956
polA SPO3844 DNA polymerase Ichromosome CDS4058742 2802 + 0.638472
priA SPO3127 primosomal protein N'chromosome CDS3335405 2211 - 0.690638
radC SPO0054 DNA repair protein RadCchromosome CDS53600 675 + 0.622222
recA SPO2034 RecAchromosome CDS2161731 1044 - 0.6159
recF SPO0151 DNA replication and repair protein RecFchromosome CDS167177 1101 + 0.681199
recG SPO1681 ATP-dependent DNA helicase RecGchromosome CDS1788412 2091 + 0.680057
recJ SPO1732 single-stranded-DNA-specific exonuclease RecJchromosome CDS1849853 1656 - 0.701087
recN SPO1207 DNA repair protein RecNchromosome CDS1260784 1650 + 0.718788
recQ SPO0107 ATP-dependent DNA helicase RecQchromosome CDS110244 2040 - 0.679902
recR SPO3569 recombination protein RecRchromosome CDS3781123 597 - 0.681742
rhlE SPO1443 ATP-dependent RNA helicase RhlEchromosome CDS1513975 1416 - 0.659605
rnhA SPO3212 ribonuclease HIchromosome CDS3421234 468 + 0.628205
rnhB SPO3452 ribonuclease HIIchromosome CDS3656206 705 - 0.62695
ruvA SPO3116 Holliday junction DNA helicase RuvAchromosome CDS3326499 675 - 0.700741
ruvB SPO3115 Holliday junction DNA helicase RuvBchromosome CDS3325427 1026 - 0.690058
ruvC SPO3117 crossover junction endodeoxyribonuclease RuvCchromosome CDS3327170 498 - 0.658635
ssb SPO1637 single-strand binding proteinchromosome CDS1741243 543 - 0.661142
tag SPO1900 DNA-3-methyladenine glycosylase Ichromosome CDS2025682 609 - 0.65353
topA SPO3079 DNA topoisomerase Ichromosome CDS3288441 2643 + 0.641317
trgB SPO1920 tellurite resistance proteinchromosome CDS2041159 1146 + 0.645724
udgA SPO0288 uracil-DNA glycosylasechromosome CDS300846 786 + 0.684478
uvrA SPO2218 UvrABC system protein Achromosome CDS2357532 2916 - 0.630315
uvrB SPO0545 UvrABC system protein Bchromosome CDS541827 2199 + 0.64302
uvrC SPO3637 UvrABC system protein Cchromosome CDS3837874 1872 - 0.637286
xerC SPO3130 tyrosine recombinase XerCchromosome CDS3339313 921 + 0.687296
xerD SPO1632 tyrosine recombinase XerDchromosome CDS1735714 960 - 0.686458
xseA SPO1344 exodeoxyribonuclease VII, large subunitchromosome CDS1404325 1449 - 0.706694
xseB SPO0249 exodeoxyribonuclease VII, small subunitchromosome CDS270485 219 - 0.607306
xth SPO2509 exodeoxyribonuclease IIIchromosome CDS2656690 807 + 0.649318