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2024-05-06 00:55:15

Gene list

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COG category: Replication, recombination and repair
Organism: Staphylococcus epidermidis RP62A phage SP-beta

Number of genes found: 182

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Staphylococcus epidermidis RP62A phage SP-beta
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SERP0349 deoxyribodipyrimidine photolyase, putativechromosome CDS349758 1374 + 0.291849
NA SERP1465 Tn554-related, transposase Bchromosome CDS1530290 2028 - 0.271203
NA SERP0130 primase-related proteinchromosome CDS121501 546 + 0.333333
NA SERP1619 conserved hypothetical proteinchromosome CDS1642111 2286 - 0.327647
NA SERP1010 cell wall enzyme EbsB, putativechromosome CDS1022964 396 + 0.320707
NA SERP2475 conserved hypothetical proteinchromosome CDS2530339 1821 - 0.226249
NA SERP1579 IS431mec-like transposasechromosome CDS1609626 675 + 0.346667
NA SERP1248 replication initiation and membrane attachment proteinchromosome CDS1284802 1371 - 0.30124
NA SERP2092 IS1272-like transposase, degeneratechromosome CDS2118445 156 + 0.314103
NA SERP1012 5'-3' exonuclease, putativechromosome CDS1054324 879 - 0.32537
NA SERP0417 comF operon protein 1, putativechromosome CDS417958 1164 + 0.328179
NA SERP2505 RadC domain proteinchromosome CDS2562107 318 + 0.339623
NA SERP0160 ISSep1-like transposasechromosome CDS164286 1014 + 0.333333
NA SERP1534 DNA ligase, ATP-dependentchromosome CDS1586894 1299 - 0.30331
NA SERP1025 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinGchromosome CDS1069448 2709 - 0.29199
NA SERP0129 deoxyribonuclease, TatD familychromosome CDS120524 771 + 0.360571
NA SERP1124 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS1162480 1347 - 0.310319
NA SERP0122 DNA polymerase III, delta prime subunit, putativechromosome CDS114318 927 + 0.296656
NA SERP0260 ISSep1-like transposasechromosome CDS267446 1014 + 0.333333
NA SERP2163 IS1272-like transposase, degeneratechromosome CDS2192083 189 - 0.296296
NA SERP0559 IS1272-like transposase, degeneratechromosome CDS550250 156 + 0.320513
NA SERP1583 IS431mec-like transposasechromosome CDS1612361 324 + 0.33642
NA SERP1703 single-stranded DNA-binding protein familychromosome CDS1745337 396 - 0.287879
NA SERP0249 IS431mec-like transposasechromosome CDS257149 675 + 0.342222
NA SERP0877 chromosome pseudo892020 246 - 0.329268
NA SERP1466 Tn554-related, transposase Achromosome CDS1532356 1113 - 0.261456
NA SERP1931 DNA-3-methyladenine glycosylasechromosome CDS1949150 618 + 0.357605
NA SERP1592 conserved hypothetical proteinchromosome CDS1621737 1533 - 0.322244
NA SERP1647 hypothetical proteinchromosome CDS1685588 513 + 0.31384
NA SERP1587 IS256-like transposasechromosome CDS1615953 1173 - 0.365729
NA SERP1259 IS256-like transposasechromosome CDS1298756 1173 - 0.365729
NA SERP1584 IS256-like transposasechromosome CDS1612762 1173 + 0.365729
NA SERP1911 ISSep1-like transposasechromosome CDS1931485 1014 + 0.33432
NA SERP1590 single-stranded-DNA-specific exonuclease RecJ, putativechromosome CDS1618839 1767 - 0.301075
NA SERP2011 IS256-like transposasechromosome CDS2028090 1173 - 0.365729
NA SERP0991 ISSep1-like transposasechromosome CDS1008383 1014 - 0.333333
NA SERP0487 Toprim domain proteinchromosome CDS480035 387 + 0.284238
NA SERP2498 cassette chromosome recombinase Achromosome CDS2557297 1350 + 0.343704
NA SERP0057 conserved hypothetical proteinchromosome CDS45446 624 - 0.294872
NA SERP2146 IS1272-like transposase, degeneratechromosome CDS2173247 156 - 0.320513
NA SERP0103 MutT/nudix family proteinchromosome CDS88346 387 + 0.346253
NA SERP1625 prophage, terminase, ATPase subunit, putativechromosome CDS1650593 1800 + 0.340556
NA SERP1688 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS1730758 1530 - 0.354248
NA SERP1380 DNA repair exonuclease family proteinchromosome CDS1437302 1197 - 0.309942
NA SERP0558 ISSep1-like transposasechromosome CDS548857 1014 + 0.331361
NA SERP2483 conserved hypothetical proteinchromosome CDS2539968 897 + 0.366778
NA SERP1639 site-specific recombinase, phage integrase familychromosome CDS1662255 1017 + 0.336283
NA SERP2458 CRISPR-associated protein, TM1808 familychromosome CDS2512055 915 - 0.304918
NA SERP1276 conserved hypothetical proteinchromosome CDS1320528 948 - 0.334388
NA SERP0126 conserved hypothetical proteinchromosome CDS117227 249 + 0.305221
NA SERP0478 IS1272-like transposase, degeneratechromosome CDS475958 156 + 0.320513
NA SERP2526 IS431mec-like transposasechromosome CDS2581238 675 + 0.343704
NA SERP1062 MutT/nudix family proteinchromosome CDS1106728 543 - 0.327808
NA SERP1523 DNA-cytosine methyltransferasechromosome CDS1582329 1008 - 0.328373
NA SERP1601 site-specific recombinase, phage integrase familychromosome CDS1630198 1044 - 0.280651
NA SERP2053 MutT/nudix family proteinchromosome CDS2076591 399 - 0.305764
NA SERP1229 DNA-3-methyladenine glycosylase I, putativechromosome CDS1264212 561 + 0.308378
NA SERP2527 conserved hypothetical proteinchromosome CDS2581944 240 - 0.245833
NA SERP0935 ImpB/MucB/SamB family proteinchromosome CDS951003 1263 + 0.326999
NA SERP1015 conserved hypothetical proteinchromosome CDS1059841 1137 - 0.359719
NA SERP1133 DNA repair protein RecO familychromosome CDS1172452 762 - 0.311024
NA SERP1501 conserved hypothetical proteinchromosome CDS1567768 1539 - 0.290448
NA SERP0891 thermonuclease precursor family proteinchromosome CDS903067 537 + 0.32216
NA SERP1548 conserved domain proteinchromosome CDS1598848 216 - 0.277778
NA SERP0727 MutS2 family proteinchromosome CDS724869 2349 + 0.338868
NA SERP2240 transposase, IS200 familychromosome CDS2268146 483 - 0.287785
NA SERP2460 CRISPR-associated protein, TM1810 familychromosome CDS2513620 387 - 0.25323
NA SERP0577 ISSep1-like transposasechromosome CDS571097 1014 - 0.333333
NA SERP0915 IS256-like transposasechromosome CDS923527 1173 + 0.365729
NA SERP1157 comE operon protein 1, putativechromosome CDS1195607 675 - 0.265185
NA SERP2457 CRISPR-associated protein, TM1807 familychromosome CDS2511030 1023 - 0.289345
NA SERP2319 hypothetical proteinchromosome CDS2356984 153 - 0.248366
NA SERP0714 conserved hypothetical protein TIGR00095chromosome CDS709691 543 + 0.324125
NA SERP1173 transposase, IS200 familychromosome CDS1208279 483 - 0.285714
NA SERP0338 conserved hypothetical proteinchromosome CDS339499 465 + 0.292473
NA SERP1393 IS1272-like transposase, degeneratechromosome CDS1449223 156 - 0.333333
NA SERP1621 DNA-binding protein HU, putativechromosome CDS1646288 330 + 0.321212
NA SERP1588 IS431mec-like transposasechromosome CDS1617188 423 + 0.345154
NA SERP1225 truncated DNA repair protein RadCchromosome CDS1258518 555 - 0.30991
NA SERP0263 endonuclease III, putativechromosome CDS271030 636 + 0.306604
NA SERP1023 DNA replication protein DnaD, putativechromosome CDS1067256 687 - 0.299854
NA SERP2479 conserved hypothetical proteinchromosome CDS2536600 1509 - 0.312127
NA SERP1018 conserved hypothetical proteinchromosome CDS1062550 333 - 0.273273
NA SERP2160 conserved domain proteinchromosome CDS2189763 432 + 0.293981
NA SERP2052 helicase, putativechromosome CDS2073731 2859 - 0.266877
NA SERP1995 IS1272-like transposase, degeneratechromosome CDS2014631 156 + 0.320513
NA SERP1538 DNA polymerase III, alpha subunit, truncationchromosome CDS1592095 1449 - 0.31332
NA SERP2477 hypothetical proteinchromosome CDS2533580 1320 - 0.271212
NA SERP1355 MutT/nudix family proteinchromosome CDS1412484 477 - 0.333333
NA SERP0369 IS1272-like transposase, degeneratechromosome CDS367730 156 - 0.314103
NA SERP0831 DNA polymerase III, alpha subunit, Gram-positive typechromosome CDS836002 4311 + 0.34006
NA SERP1841 conserved hypothetical proteinchromosome CDS1870031 171 + 0.274854
NA SERP0565 ISSep1-like transposasechromosome CDS558754 1014 + 0.33432
NA SERP1591 conserved hypothetical proteinchromosome CDS1620608 1113 - 0.298293
NA SERP1623 conserved hypothetical proteinchromosome CDS1646837 1185 + 0.3173
NA SERP0815 DNA processing protein DprA, putativechromosome CDS818735 873 + 0.331042
NA SERP1361 hypothetical proteinchromosome CDS1417760 288 + 0.260417
NA SERP2002 IS1272-like transposase, degeneratechromosome CDS2020849 147 + 0.312925
NA SERP2499 cassette chromosome recombinase Bchromosome CDS2558668 1629 + 0.350522
NA SERP1190 ATPase, AAA familychromosome CDS1225301 1272 + 0.347484
NA SERP0380 ISSep1-like transposasechromosome CDS378546 1014 - 0.333333
NA SERP2496 conserved hypothetical proteinchromosome CDS2555270 1794 + 0.34058
NA SERP1183 helicase, putative, RecD/TraA familychromosome CDS1217501 2433 - 0.324702
NA SERP2459 CRISPR-associated protein, TM1792 familychromosome CDS2512974 645 - 0.337985
NA SERP2268 IS1272-like transposase, degeneratechromosome CDS2301515 156 - 0.307692
NA SERP1154 conserved hypothetical proteinchromosome CDS1191827 975 - 0.271795
NA SERP1518 conserved hypothetical proteinchromosome CDS1580283 501 - 0.301397
NA SERP1571 conserved hypothetical proteinchromosome CDS1606724 411 - 0.328467
NA SERP0595 daunorubicin resistance protein DrrC, putativechromosome CDS588630 2259 + 0.327579
NA SERP2323 IS1272-like transposase, degeneratechromosome CDS2359862 156 - 0.320513
NA SERP0225 IS1272-like transposase, degeneratechromosome CDS234297 156 + 0.314103
NA SERP1570 Staphylococcal nuclease family proteinchromosome CDS1606380 348 - 0.316092
NA SERP1537 DNA polymerase III, alpha subunit, putativechromosome CDS1589146 2487 - 0.316446
NA SERP1180 conserved hypothetical protein TIGR00250chromosome CDS1213788 429 - 0.335664
NA SERP1348 ISSep1-like transposasechromosome CDS1405027 597 + 0.314908
NA SERP0697 ISSep1-like transposasechromosome CDS693996 1014 + 0.332347
NA SERP0544 ISSep1-like transposasechromosome CDS527330 1014 - 0.329389
NA SERP1660 MutS family proteinchromosome CDS1698229 1617 + 0.295609
NA SERP1600 conserved hypothetical proteinchromosome CDS1628607 1281 - 0.284153
NA SERP1432 exonucleasechromosome CDS1493655 555 + 0.327928
NA SERP1730 ISSep1-like transposasechromosome CDS1767779 1014 - 0.333333
NA SERP1340 ISSep1-like transposasechromosome CDS1397898 477 + 0.327044
cas1 SERP2463 CRISPR-associated protein Cas1chromosome CDS2516639 906 - 0.267108
dinP SERP1433 DNA-damage-inducible protein Pchromosome CDS1494240 1071 - 0.328665
dnaA SERP2553 chromosomal replication initiator protein DnaAchromosome CDS2614976 1356 - 0.336283
dnaB SERP2537 replicative DNA helicasechromosome CDS2594401 1401 - 0.394718
dnaE SERP1266 DNA polymerase III, alpha subunitchromosome CDS1308406 3198 - 0.316135
dnaG SERP1128 DNA primasechromosome CDS1167172 1797 - 0.293267
dnaI SERP1247 primosomal protein DnaIchromosome CDS1283882 921 - 0.311618
dnaN SERP2552 DNA polymerase III, beta subunitchromosome CDS2613533 1134 - 0.318342
dnaX SERP0114 DNA polymerase III, gamma and tau subunitschromosome CDS102244 1707 + 0.335677
fpg SERP1253 formamidopyrimidine-DNA glycosylasechromosome CDS1289659 873 - 0.310424
gyrA SERP2548 DNA gyrase, A subunitchromosome CDS2607094 2682 - 0.368382
gyrB SERP2549 DNA gyrase, B subunitchromosome CDS2609812 1932 - 0.370083
hexA SERP0863 DNA mismatch repair protein HexAchromosome CDS874143 2622 + 0.322654
hexB SERP0864 DNA mismatch repair protein HexBchromosome CDS876779 1938 + 0.320949
hup SERP1041 DNA-binding protein HUchromosome CDS1086529 273 - 0.358974
ligA SERP1442 DNA ligase, NAD-dependentchromosome CDS1505601 1998 - 0.343343
mfd SERP0141 transcription-repair coupling factorchromosome CDS130875 3510 + 0.344729
mutY SERP1406 A/G-specific adenine glycosylasechromosome CDS1470441 1044 - 0.33908
nfo SERP1123 endonuclease IVchromosome CDS1161580 891 - 0.337823
nth SERP1022 endonuclease IIIchromosome CDS1066607 660 - 0.328788
ogt SERP2123 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS2148070 519 - 0.348748
parC SERP0926 DNA topoisomerase IV, A subunitchromosome CDS939046 2403 + 0.33042
parE SERP0925 DNA topoisomerase IV, B subunitchromosome CDS937049 2001 + 0.346327
pcrA SERP1443 ATP-dependent DNA helicase PcrAchromosome CDS1507602 2190 - 0.333333
polA SERP1254 DNA polymerase Ichromosome CDS1290547 2631 - 0.313189
priA SERP0779 primosomal protein N'chromosome CDS777823 2409 + 0.334994
recA SERP0852 recA proteinchromosome CDS862787 1050 + 0.366667
recF SERP2550 DNA replication and repair protein RecFchromosome CDS2611754 1116 - 0.346774
recG SERP0793 ATP-dependent DNA helicase RecGchromosome CDS792673 2049 + 0.333333
recJ SERP1199 single-stranded-DNA-specific exonuclease RecJchromosome CDS1236096 2274 - 0.318821
recN SERP1080 DNA repair protein RecNchromosome CDS1125888 1677 - 0.323792
recQ-1 SERP0384 ATP-dependent DNA helicase RecQchromosome CDS383163 1779 + 0.336144
recQ-2 SERP1049 ATP-dependent DNA helicase RecQchromosome CDS1095743 1380 - 0.314493
recR SERP0116 recombination protein RecRchromosome CDS104363 597 + 0.373534
rexA SERP0555 exonuclease RexAchromosome CDS542830 3657 + 0.317473
rexB SERP0554 exonuclease RexBchromosome CDS539364 3480 + 0.311494
rnhB SERP0812 ribonuclease HIIchromosome CDS814956 771 + 0.333333
rnhC SERP0723 ribonuclease HIIIchromosome CDS721102 927 - 0.32794
ruvA SERP1206 Holliday junction DNA helicase RuvAchromosome CDS1245225 603 - 0.321725
ruvB SERP1205 Holliday junction DNA helicase RuvBchromosome CDS1244207 1005 - 0.373134
sbcC SERP0918 exonuclease SbcCchromosome CDS926581 3030 + 0.267327
sbcD SERP0917 exonuclease SbcDchromosome CDS925453 1125 + 0.296
ssb SERP0045 single-stranded DNA-binding proteinchromosome CDS40716 510 + 0.386275
sspB SERP2390 cysteine protease precursor SspBchromosome CDS2440678 1188 + 0.329966
tnpA-1 SERP1224 Tn554, transposase Achromosome CDS1257314 1086 - 0.321363
tnpA-2 SERP1347 Tn554, transposase Achromosome CDS1403752 1086 - 0.321363
tnpA-3 SERP2506 transposase Achromosome CDS2562543 1086 + 0.321363
tnpB-1 SERP1223 Tn554, transposase Bchromosome CDS1255425 1893 - 0.338616
tnpB-2 SERP1346 Tn554, transposase Bchromosome CDS1401863 1893 - 0.338616
tnpB-3 SERP2507 transposase Bchromosome CDS2563625 1893 + 0.338616
topA SERP0816 DNA topoisomerase Ichromosome CDS819790 2070 + 0.348309
topB SERP1836 DNA topoisomerase IIIchromosome CDS1864678 2136 - 0.303371
ung SERP0228 uracil-DNA glycosylasechromosome CDS236766 651 + 0.344086
uvrA SERP0427 excinuclease ABC, A subunitchromosome CDS429809 2835 + 0.348854
uvrB SERP0426 excinuclease ABC, B subunitchromosome CDS427816 1986 + 0.344411
uvrC SERP0729 excinuclease ABC, C subunitchromosome CDS727888 1785 + 0.334454
xerC SERP0818 tyrosine recombinase XerCchromosome CDS823416 891 + 0.301908
xerD SERP1060 tyrosine recombinase XerDchromosome CDS1105244 888 - 0.326577
xseA SERP1084 exodeoxyribonuclease VII, large subunitchromosome CDS1129429 1338 - 0.312407
xseB SERP1083 exodeoxyribonuclease VII, small subunitchromosome CDS1129206 231 - 0.30303