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2024-05-03 13:27:29

Gene list

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COG category: Replication, recombination and repair
Organism: Streptococcus thermophilus LMG 18311, LMG 18311

Number of genes found: 206

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Streptococcus thermophilus LMG 18311, LMG 18311
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA stu1415 IS1193, transposase, ISL3 family, truncatedchromosome CDS1248807 171 + 0.391813
NA stu0024 IS1193, transposase, ISL3 family, truncatedchromosome CDS28393 267 - 0.344569
NA stu0766 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS724185 207 - 0.352657
NA stu0822 IS1193, transposase, ISL3 family, truncatedchromosome CDS760551 207 - 0.347826
NA stu0743 IS1193, transposase, ISL3 family, truncatedchromosome CDS702931 237 - 0.379747
NA stu0136 MutT/nudix family proteinchromosome CDS153676 447 + 0.391499
NA stu1781 IS1193, transposase, ISL3 family, truncatedchromosome CDS1588642 171 + 0.391813
NA stu0841 IS1191, transposase, IS256 family, truncatedchromosome CDS774818 192 - 0.359375
NA stu1905 ISSth4, transposase, IS30 family, truncatedchromosome CDS1695965 456 + 0.355263
NA stu0765 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS723903 219 - 0.347032
NA stu0244 ISSpn1, transposase, IS3 family, truncatedchromosome CDS250142 351 + 0.361823
NA stu1611 conserved hypothetical proteinchromosome CDS1426984 309 + 0.423948
NA stu1272 IS1193, transposase, ISL3 family, truncatedchromosome CDS1125244 207 + 0.410628
NA stu1452 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS1285222 195 - 0.369231
NA stu0234 conserved hypothetical proteinchromosome CDS237933 1173 + 0.408355
NA stu1302 IS1193, transposase, ISL3 family, truncatedchromosome CDS1154804 207 + 0.396135
NA stu0015 IS1167, transposase, ISL3 family, truncatedchromosome CDS15621 285 - 0.375439
NA stu0961 conserved hypothetical proteinchromosome CDS867446 381 + 0.338583
NA stu0863 IS1167, transposase, ISL3 family, truncatedchromosome CDS790120 300 - 0.353333
NA stu0069 ISSpn1, transposase, IS3 family, truncatedchromosome CDS80592 264 - 0.386364
NA stu0038 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS43472 246 + 0.365854
NA stu0013 IS1167, transposase, ISL3 family, truncatedchromosome CDS14678 222 - 0.373874
NA stu0067 ISSpn1, transposase, IS3 family, truncatedchromosome CDS80091 150 - 0.313333
NA stu1897 ISSth4, transposase, IS30 family, truncatedchromosome CDS1691821 156 + 0.391026
NA stu0843 IS1191, transposase, IS256 family, truncatedchromosome CDS775647 360 - 0.386111
NA stu0014 IS1167, transposase, ISL3 family, truncatedchromosome CDS14978 726 - 0.384298
NA stu0768 IS861, transposase (orf1), IS3 family, truncatedchromosome CDS724799 183 - 0.387978
NA stu0183 conserved hypothetical protein, putative protein kinasechromosome CDS190043 2340 + 0.287179
NA stu1454 IS861, transposase (orf1), IS3 family, truncatedchromosome CDS1285680 306 - 0.313726
NA stu0963 conserved hypothetical proteinchromosome CDS868490 900 + 0.375556
NA stu0680 conserved hypothetical proteinchromosome CDS646828 2073 - 0.334298
NA stu1414 IS1193, transposase, ISL3 family, truncatedchromosome CDS1247844 666 + 0.376877
NA stu0957 unknown proteinchromosome CDS863174 396 + 0.383838
NA stu0148 1,6-alpha-glucanhydrolase (dextranase), truncatedchromosome CDS162753 291 + 0.402062
NA stu1405 ISSpn1, transposase, IS3 family, truncatedchromosome CDS1241316 189 - 0.396825
NA stu0871 ISSpn1, transposase, IS3 family, truncatedchromosome CDS793667 555 + 0.390991
NA stu1960 DNA recombination protein, putativechromosome CDS1735349 420 + 0.397619
NA stu0207 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS214267 219 + 0.347032
NA stu1898 ISSth4, transposase, IS30 family, truncatedchromosome CDS1692168 456 + 0.355263
NA stu1784 IS861, transposase (orf1), IS3 family, truncatedchromosome CDS1590700 285 + 0.322807
NA stu0964 hypothetical proteinchromosome CDS869392 1074 + 0.345438
NA stu1858 conserved hypothetical proteinchromosome CDS1654874 957 - 0.3814
NA stu0126 IS1193, transposase, ISL3 family, truncatedchromosome CDS142609 912 - 0.376096
NA stu0107 IS1216, transposase, IS6 family, truncatedchromosome CDS115043 384 - 0.390625
NA stu1780 IS1193, transposase, ISL3 family, truncatedchromosome CDS1588138 207 + 0.391304
NA stu1567 conserved hypothetical proteinchromosome CDS1384160 270 + 0.477778
NA stu0068 ISSpn1, transposase, IS3 family, truncatedchromosome CDS80345 234 - 0.363248
NA stu1800 topoisomerase/primasechromosome CDS1604627 561 - 0.390374
NA stu0018 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS16577 339 + 0.386431
NA stu0658 conserved hypothetical proteinchromosome CDS627553 912 + 0.372807
NA stu0295 hypothetical protein, truncatedchromosome CDS290976 195 - 0.451282
NA stu0956 hypothetical proteinchromosome CDS862566 624 + 0.36859
NA stu0206 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS213829 381 + 0.35958
NA stu1126 conserved hypothetical proteinchromosome CDS992308 567 - 0.375661
NA stu0962 conserved hypothetical proteinchromosome CDS867826 663 + 0.372549
NA stu0726 IS1239, transposase, IS30 family, truncatedchromosome CDS685138 849 + 0.386337
NA stu0681 hypothetical proteinchromosome CDS648991 723 - 0.360996
NA stu0655 site-specific DNA-methyltransferase (adenine-specific) LlaI, truncatedchromosome CDS622082 177 + 0.288136
NA stu0398 IS1167, transposase, ISL3 family, truncatedchromosome CDS386673 540 - 0.362963
NA stu1273 ISSth5, transposase, IS110 family, truncatedchromosome CDS1125594 426 + 0.370892
NA stu1496 MutT/nudix family proteinchromosome CDS1318928 465 - 0.44086
NA stu1904 ISSth4, transposase, IS30 family, truncatedchromosome CDS1695618 156 + 0.397436
NA stu1988 conserved hypothetical protein, MutT/nudix familychromosome CDS1756405 552 - 0.353261
NA stu0205 IS861, transposase (orf1), IS3 family, truncatedchromosome CDS213403 420 + 0.35
NA stu0601 conserved hypothetical protein, MutT/nudix family proteinchromosome CDS569576 459 - 0.40305
NA stu1088 IS1167, transposase, ISL3 family, truncatedchromosome CDS959094 633 - 0.394945
NA stu0925 IS1193, transposase, ISL3 family, truncatedchromosome CDS842852 984 - 0.392276
NA stu1446 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS1282036 108 - 0.277778
NA stu0864 IS1167, transposase, ISL3 family, truncatedchromosome CDS790359 480 - 0.385417
NA stu0019 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS16929 489 + 0.357873
NA stu0108 IS1216, transposase, IS6 family, truncatedchromosome CDS115451 279 - 0.315412
NA stu0510 hypothetical proteinchromosome CDS485749 636 - 0.383648
NA stu0129 IS1193, transposase, ISL3 family, truncatedchromosome CDS146390 495 - 0.39798
NA stu0814 ATP-dependent DNA helicase, truncatedchromosome CDS755605 783 + 0.371648
NA stu1787 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS1591563 489 + 0.359918
NA stu1042 unknown proteinchromosome CDS930567 567 - 0.271605
NA stu1786 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS1591211 339 + 0.39823
NA stu0842 IS1191, transposase, IS256 family, truncatedchromosome CDS775051 564 - 0.388298
NA stu1449 hypothetical proteinchromosome CDS1282818 201 - 0.393035
NA stu0036 IS861, transposase (orf1), IS3 family, truncatedchromosome CDS42596 459 + 0.348584
NA stu0037 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS43108 315 + 0.346032
NA stu0564 conserved hypothetical protein, MutT/nudix familychromosome CDS533974 549 + 0.418944
NA stu0813 ATP-dependent DNA helicase, truncatedchromosome CDS753868 1674 + 0.373955
NA stu0769 IS861, transposase (orf1), IS3 family, truncatedchromosome CDS724974 279 - 0.304659
NA stu1451 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS1284577 639 - 0.355243
NA stu1130 IS657, transposase, IS200 family, truncatedchromosome CDS995457 174 - 0.396552
NA stu0879 SOS responce UmuC protein, truncatedchromosome CDS800589 822 + 0.358881
NA stu1948 conserved hypothetical proteinchromosome CDS1721850 2160 + 0.25
NA stu0679 MutT/nudix family proteinchromosome CDS646332 474 + 0.362869
NA stu1638 ISSth3, transposase, IS30 family, truncatedchromosome CDS1451006 255 + 0.419608
NA stu0095 Integrase/recombinase, putative, truncatedchromosome CDS103734 243 - 0.378601
NA stu0870 ISSpn1, transposase, IS3 family, truncatedchromosome CDS793445 219 + 0.328767
NA stu1552 ISSth2, transposase, IS5 family, truncatedchromosome CDS1368925 639 - 0.372457
NA stu1087 IS1167, transposase, ISL3 family, truncatedchromosome CDS959678 852 + 0.377934
NA stu1649 methyltransferase, putativechromosome CDS1462429 549 - 0.468124
NA stu1274 ISSth5, transposase, IS110 family, truncatedchromosome CDS1126073 387 + 0.390181
NA stu0025 IS1193, transposase, ISL3 family, truncatedchromosome CDS28782 267 - 0.382022
NA stu1526 methylguanine-DNA methyltransferase, truncatedchromosome CDS1346068 228 - 0.434211
NA stu1783 IS657, transposase, IS200 family, truncatedchromosome CDS1590337 249 - 0.329317
NA stu0767 IS861, transposase (orf2), IS3 family, truncatedchromosome CDS724405 336 - 0.363095
alkD stu1300 DNA alkylation repair proteinchromosome CDS1153158 480 - 0.38125
blpT stu1676 immunity/modification proteinchromosome CDS1485530 933 - 0.423365
comEA stu1562 late competence protein required for DNA binding and uptakechromosome CDS1380719 696 - 0.431034
comFA stu0368 late competence protein required for DNA uptakechromosome CDS355380 1320 + 0.368939
cshA stu1957 chromosome segregation helicasechromosome CDS1733329 1269 - 0.412924
deaD stu1261 ATP-dependent RNA helicasechromosome CDS1110742 1083 + 0.382271
dinP stu1656 DNA polymerase IV, damage-induciblechromosome CDS1468248 1104 - 0.432065
dnaA stu0001 chromosomal replication initiator protein dnaAchromosome CDS186 1365 + 0.369231
dnaB stu0320 chromosome replication initiation / membrane attachment protein DnaBchromosome CDS310905 1176 + 0.397959
dnaD stu1221 DNA replication protein dnaDchromosome CDS1074242 699 - 0.39485
dnaE stu1198 DNA polymeraDNA polymerase III alphase III alpha subunitchromosome CDS1052832 3111 - 0.386692
dnaG stu1489 DNA primasechromosome CDS1312195 1812 - 0.414459
dnaH stu0490 DNA polymerase III delta prime subunitchromosome CDS470268 876 + 0.391553
dnaI stu0321 primosome component (helicase loader) DnaIchromosome CDS312084 903 + 0.435216
dnaN stu0002 beta subunit of DNA polymerase IIIchromosome CDS1705 1137 + 0.353562
dnaQ stu1601 DNA polymerase III epsilon subunitchromosome CDS1417802 591 - 0.399323
dnaX stu1174 DNA polymerase III subunits gamma / tauchromosome CDS1032173 1653 - 0.413793
dprA stu0896 DNA processing protein, Smf familychromosome CDS817884 840 + 0.371429
exoA stu1550 3'-exo-deoxyribonucleasechromosome CDS1367425 828 + 0.415459
gyrA stu1279 DNA gyrase A subunitchromosome CDS1129037 2436 - 0.421593
gyrB stu1521 DNA gyrase B subunitchromosome CDS1341739 1953 - 0.423451
holA stu0719 DNA polymerase III delta subunitchromosome CDS679679 1035 + 0.352657
holB stu1999 DNA polymerase III delta prime subunitchromosome CDS1764167 1362 - 0.403818
hstH stu1209 histone-like DNA-binding proteinchromosome CDS1064445 276 - 0.405797
int stu0102 integrase/recombinase, phage integrase familychromosome CDS111278 1218 - 0.319376
int stu1955 integrase/recombinase, phage associatedchromosome CDS1731747 1140 + 0.344737
int stu1663 integrase/recombinase plasmid associated, putativechromosome CDS1475158 462 - 0.396104
ligA stu1554 DNA ligasechromosome CDS1370777 1959 - 0.433384
llaBIIM stu1376 type II restriction-modification system modification subunitchromosome CDS1209511 675 - 0.365926
mutL stu0054 DNA mismatch repair proteinchromosome CDS59654 1944 + 0.412037
mutM stu0620 formamidopyrimidine-DNA glycosylasechromosome CDS587288 822 + 0.422141
mutS1 stu0050 DNA mismatch repair proteinchromosome CDS55638 2559 + 0.425166
mutS2 stu1762 DNA mismatch repair proteinchromosome CDS1571361 2352 + 0.44898
mutT stu1143 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS1004075 483 - 0.374741
mutY stu1757 A/G-specific adenine glycosylasechromosome CDS1565536 1152 + 0.421875
nth stu1220 endonuclease III, DNA repairchromosome CDS1073598 660 - 0.389394
parC stu0589 DNA topoisomerase IV (subunit C)chromosome CDS559088 2520 + 0.418254
parE stu0588 DNA topoisomerase IV (subunit B)chromosome CDS556565 1950 + 0.438462
pcrA stu0986 ATP-dependent DNA helicasechromosome CDS886271 2328 + 0.421821
polA stu1761 DNA-directed DNA polymerase Ichromosome CDS1568515 2640 - 0.438258
polC stu0062 DNA polymerase III alpha subunitchromosome CDS72791 4395 + 0.392036
priA stu1429 primosomal replication factor Ychromosome CDS1262890 2397 - 0.438048
radC stu1465 DNA repair proteinchromosome CDS1294403 687 - 0.467249
recA stu0060 recombination protein Achromosome CDS64654 1155 + 0.41039
recD stu1767 exodeoxyribonuclease Vchromosome CDS1576578 2505 + 0.421158
recF stu2015 DNA repair and genetic recombination proteinchromosome CDS1781957 1101 + 0.357856
recG stu1725 ATP-dependent DNA helicasechromosome CDS1535455 2019 - 0.438831
recJ stu1224 single strand DNA-specific exonucleasechromosome CDS1076760 2211 - 0.420172
recN stu1213 DNA repair and genetic recombination proteinchromosome CDS1067194 1671 - 0.390186
recO stu0027 DNA repair proteinchromosome CDS30585 774 + 0.352713
recR stu0614 recombination proteinchromosome CDS583686 597 + 0.430486
rexA stu1716 ATP-dependent exonuclease, subunit Achromosome CDS1521235 3654 - 0.437329
rexB stu1717 ATP-dependent exonuclease, subunit Bchromosome CDS1524878 3321 - 0.430894
rheA stu1568 ATP-dependent RNA helicasechromosome CDS1384986 1587 - 0.444234
rheB stu1699 ATP-dependent RNA helicasechromosome CDS1506322 1344 - 0.416667
rnhA stu0894 ribonuclease HIIchromosome CDS816103 783 + 0.401022
rnhB stu1765 ribonuclease HIIIchromosome CDS1574984 891 + 0.43771
ruvA stu0056 Holliday junction DNA helicase, subunit Achromosome CDS62100 591 + 0.387479
ruvB stu1936 Holliday junction DNA helicase, subunit Bchromosome CDS1711466 1002 - 0.426148
sbcC stu1394 ATP-dependent dsDNA exonucleasechromosome CDS1224240 3180 - 0.439937
sbcD stu1395 ATP-dependent dsDNA exonucleasechromosome CDS1227416 1227 - 0.437653
snf stu0237 ATP-dependent RNA helicasechromosome CDS241081 3096 + 0.396641
ssbA stu1845 single strand binding proteinchromosome CDS1646005 393 - 0.419847
ssbB stu1753 single strand binding proteinchromosome CDS1562878 519 - 0.421965
sthIM stu0885 type III restriction-modification system methylation subunitchromosome CDS806626 1926 - 0.389927
tag stu0057 3-methyladenine DNA glycosylase Ichromosome CDS62697 555 + 0.367568
tatD stu1801 deoxyribonuclease, putativechromosome CDS1605180 777 - 0.391248
tnp1191 stu0326 IS1191, transposase, IS256 familychromosome CDS318122 1209 + 0.38627
tnp1191 stu0849 IS1191, transposase, IS256 familychromosome CDS780961 1209 + 0.387097
tnp1191 stu1036 IS1191, transposase, IS256 familychromosome CDS929095 1089 + 0.393021
tnp1191 stu0839 IS1191, transposase, IS256 familychromosome CDS771091 1209 + 0.383788
tnp1191 stu1945 IS1191, transposase, IS256 familychromosome CDS1719293 1209 - 0.384615
tnp1193 stu1124 IS1193, transposase, ISL3 familychromosome CDS989766 1257 - 0.396181
tnp1193 stu1086 IS1193, transposase, ISL3 familychromosome CDS957830 1257 + 0.392999
tnp1193 stu1045 IS1193, transposase, ISL3 familychromosome CDS934110 1257 - 0.396181
tnp1193 stu1444 IS1193, transposase, ISL3 familychromosome CDS1278565 1257 + 0.389021
tnp1216 stu0396 IS1216, transposase, IS6 familychromosome CDS383643 681 + 0.397944
tnp1239 stu0266 IS1239, transposase, IS30 familychromosome CDS266441 1041 - 0.384246
tnp1239 stu1792 IS1239, transposase, IS30 familychromosome CDS1596832 1041 - 0.384246
tnp1239 stu0971 IS1239, transposase, IS30 familychromosome CDS875897 1041 + 0.384246
tnp1239 stu2017 IS1239, transposase, IS30 familychromosome CDS1785019 1041 + 0.384246
tnp1239 stu1985 IS1239, transposase, IS30 familychromosome CDS1753765 1041 - 0.384246
tnp1239 stu0223 IS1239, transposase, IS30 familychromosome CDS226455 1041 - 0.384246
tnp1239 stu0046 IS1239, transposase, IS30 familychromosome CDS51414 1041 - 0.384246
tnp657 stu1807 IS657, transposase, IS200 familychromosome CDS1615817 474 - 0.352321
tnpSth1 stu0797 ISSth1, transposase (orf1), IS3 familychromosome CDS742952 741 - 0.396761
tnpSth1 stu0796 ISSth1, transposase (orf2), IS3 familychromosome CDS742068 870 - 0.401149
tnpSth1 stu1835 ISSth1, transposase (orf1), IS3 familychromosome CDS1638049 741 - 0.39946
tnpSth1 stu1355 ISSth1, transposase (orf2), IS3 familychromosome CDS1190123 870 - 0.4
tnpSth1 stu0898 ISSth1, transposase (orf2), IS3 familychromosome CDS821099 870 - 0.401149
tnpSth1 stu1834 ISSth1, transposase (orf2), IS3 familychromosome CDS1637165 870 - 0.402299
tnpSth1 stu1356 ISSth1, transposase (orf1), IS3 familychromosome CDS1191007 741 - 0.39946
tnpSth1 stu1678 ISSth1, transposase (orf2), IS3 familychromosome CDS1487354 870 + 0.401149
tnpSth1 stu0899 ISSth1, transposase (orf1), IS3 familychromosome CDS821983 741 - 0.396761
tnpSth1 stu1677 ISSth1, transposase (orf1), IS3 familychromosome CDS1486599 741 + 0.398111
topA stu0897 DNA topoisomerase Ichromosome CDS818891 2145 + 0.40979
trcF stu0006 transcription repair coupling factorchromosome CDS5046 3507 + 0.381238
umuC1 stu1385 SOS responce UmuC proteinchromosome CDS1215079 1416 - 0.384181
ung stu1055 uracil DNA glycosylasechromosome CDS945468 681 - 0.424376
uvrA stu1748 excinuclease ABC subunit Achromosome CDS1556652 2826 - 0.445506
uvrB stu1497 excinuclease ABC subunit Bchromosome CDS1319437 2007 - 0.43149
uvrC stu1306 excinuclease ABC subunit Cchromosome CDS1157202 1788 - 0.428412
xer1 stu1008 integrase/recombinase, tyrosine familychromosome CDS906381 1071 - 0.365079
xer2 stu0259 Integrase/recombinase, tyrosine familychromosome CDS260388 762 + 0.412073
xseA stu1218 exodeoxyribonuclease VII, large subunitchromosome CDS1071191 1341 - 0.422819
xseB stu1217 exodeoxyribonuclease VII, small subunitchromosome CDS1070998 216 - 0.365741