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# Vibrio fischeri ES114, ES114

>VF0952 holliday junction DNA helicase RuvB
MIEADRLIAADNPTFREEDVIDRAIRPKKLDDYQGQDHVRSQMEIFIKAA
QMREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLA
ALLTNLEENDILFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSI
KIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVEDLQHIVQRSAD
CLNLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVMSDGNISSEIAD
KALNMLDVDVRGFDYMDRKLLLAIMEKFDGGPVGLDNIAAAIGEERDTIE
DVIEPYLIQQGYLQRTPRGRIVSDRAYLHFGIDKPDK
>VF2228 topoisomerase IV subunit B
MTEQYNAGAIEVLNGLEPVRRRPGMYTDTVRPNHLGQEVIDNSVDEALAG
HAKKVEVILHADQSLEVIDDGRGMPVDIHPVEKVSGVELILCKLHAGGKF
SGKNYEFSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFENGDKVSDL
TVTGTCGRRNRGTSVHFWPDASYFDSAKFSVTRLINNLKAKAVLCPGLEI
VFKDKVNDKEHNWCYEDGLKDYLLEGVTGFTLLPEIPFTGAFSGTGEAAD
WAVTWLPEGGELVAESYVNLIPTAQGGTHVNGMRQGLLDAMREFCEFRNL
VPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV
KDAFSLWLNEKPQIAEQLAEACIANAHRRMRAAKKVVRKKIASGPALPGK
LTDCSVQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEV
SADQVLASQEVHDISVALGIDPDSDDLSGLRYGKVCILADADSDGLHIAT
LLCALYLKHFKALVQAGHVYVAMPPLYRIDCGKEVFYALDEEEKEGVLDR
LSNKRAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDDEQTDEM
MDMLLGKKRADDRRSWLQSNGDQAEV
>VF0437 endonuclease I
MKLIRLLISIIAIGSAFNVLAAPPSSFSKAKKEAVKIYLDHPTSFYCGCD
ITWKDKKKGIPDLQSCGYNVRKQEKRASRIEWEHVVPAWQFGHQRQCWQD
GGRKNCTRKDKQFKLMEADLHNLVPAIGEVNGDRSNFRFSQWNGNKGAYY
GQCAFKVDFKGRVAEPPAQSRGAIARTYLYMNQEYRFNLSKSQRQLMNAW
DKQYPVSEWECERDKRIAKIQGNHNQFVYKACRK
>VF1204 DNA gyrase subunit A
MSDLAKEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLF
AMDVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY
MLVDGQGNFGSIDGDSAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYD
GTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVVNGCLAFIEN
EEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSKANIEA
DKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGM
RIVIECKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEML
KCFVDHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAP
TPAEAKEGLISRGWDLGNVASMLERAGTDAARPDWLEPEFGIREGKYFLT
EQQAQAILELRLHRLTGLEHEKILDEYKALLDEIAELMHILASTERLMEV
IRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSREGYVKY
QILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYS
LKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIFMATG
DGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAG
KVVRFNEEQVRGMGRTASGVRGMKLSGEDQVVSLIVPSNEGDILTVTQNG
YGKRTVLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITDA
GTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRIDEVEEAEIIEGE
EGEVTEATVTTEATDAPQADTDAESTEE
>VF1334 oxalate/formate antiporter
MKFPKTLPETHKALLSTIADSFSQDTRIEGIGVSGSYASDSMDKYSDLDL
VIAISPTHFEEVMSSRFELINKIEGKVAAFTGEHVGEPRLIIALFKPHAI
HVDFKFVSLPDAAVRVDDTKVIWDRSGLLTKVFDNSTHQYPQPSPQWIED
RFWVWTHYAATKIARGEYFETVEFLSFLRSVVLSPLALQQNGLTPSGVRK
IEQRLPEFSQHLKETVVPPEKDALINALQCCISLYLKLRENEIDVDVQLE
AQHLALHYVDQELMK
>VF2232 ADP-ribose pyrophosphatase
MVLSSNIDLVNQFGSEDVEIISKEPLFNGFFKMTKVAFRHQLFSGGWSEV
IERELFERGHAVALLPYDPKTDQVVLIEQIRVGALESNAPWQYEIVAGMI
DKDESAEQVAVREADEEAGITVAHLEKISHFYPSSGGCTERIDVFVGCVD
ASKAEGIHGLEDENEDIQVHVVSREEAYALVNRGIIENAASIIALQWLEL
NVSRLRSQWNAQ
>VFA0846 hypothetical protein
MHTLAQLQSGELQGITRLQLSEQLTEFPKEILSLADSLEILDLSNNQLTT
LPNEINQLSKLKIFFASNNPFTVFPDALAQCENLEMIGFKSCQIKQISEN
AFPPKLRWLILTDNQLETVPDTLGECNLMQKLALAGNKLTELPDNLSQMH
NLELLRISANQLTKCPDQLLDLPKLAWFAFAGNPFCKSDLKIKSVPTVSS
SDYTLENVLGQGASGVISKAHWNKAQTDFPQEIAVKVFKGEVTSDGYPED
ELQACLKVGNHPSLVQSLAQVNEENHLALIMNLIPAHYKNLGLPPSLESC
TRDTFPNGFSLSLEKINKMTSEMCNVFNHLHDNQVCHGDLYAHNTLFDNE
ANIIFGDFGAASMYHMLSTTQQQKIRTIEERALNHFIDDLMSVCEH
>VFA0524 ribonuclease H
MSTNTYSIYIDGAAPNNQGGCMKGGIGIAVYDVNNELMDTCSITVNRATD
NAELELMALVEGLEYAADGDIIYSDSEFCVKGYNEWLDGWKAKGWRKADK
KPVAYRELWQQVDALRKEKYVEVVKVRAHSGVEGNEKADSLASMAARK
>VF0412 DNA polymerase III, chi subunit
MSQALFYVLEPTSPAATTDGQLKFVCQLAHYYYSQNARVYVLAQDKEQAL
LIDEALWQYDVSEFTPHNLVGEGPKSGSPIEIGWGTLRSSGRRHVLINLA
QEVASFAVSFAQVVDFVPCEEKSKQQARERYKIYRNAGRAMQTEILK
>VF1237 integration host factor alpha-subunit
MALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFG
NFDLREKSERPGRNPKTGEDIPISARRVVTFKPGQKLKARVENLPVEK
>VFA0815 DNA-3-methyladenine glycosylase
MRKERCHWAEVSDLDREYHDNEWGVPVYSDHELFEYLILEGAQAGLSWST
ILKKREGYRLLFDGFDLQKIIQYDQDKVESLMQDSRIIRNRLKINSVITN
ANAFIKIQQEFGSFSNYLWSYVDQKPIINHWEVINDVPATTELSDKLSKD
LKKRGFKFVGSTICYAFLQATGVVNDHLVNCPCYAKNNK
>VF1890 NAD-dependent DNA ligase
MSIEQTLDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPE
LVTVDSPSQRVGGEALDGFTQIQHEIPMLSLDNAFSDEELEAFEKRMNDR
LISKPVSLFCCEPKLDGLAVSLLYVDGKLVQAGTRGDGTTGENITENVRT
IRCIPLTLQGEGWPTRLEVRGEVFMPKAGFEALNERALKRGEKPFANPRN
AAAGSLRQLDSKITATRPLSFYAYSVGVIEGGELETSHYQRFVQLKSWGL
PMCEETKQCHSLTEVKAYYKDILERRDALKYEIDGVVIKVDDIALQEQLG
FVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGV
TVSNATLHNADEIARLGVHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKA
IVYPIHCPVCGSNLERVEGEAVTRCGAGLVCQAQRKEALKHFVSRKALDV
DGLGDKVVEQLVDKEMVETPADLFKLSAGLLTVLERMGPKSAQNVVDALN
KAKATTLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVATFEQLIEVSD
VGDIVAKHVLNFFAEPHNKTVIEDLQEMGIHWPEIKALDESVPQPLAGKV
VVLTGTLHKLKRNEAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKA
EELGVEVMNEEQLIELLN
>VF1464 superfamily I DNA and RNA helicases
MTSWILSTNPIARLFKKEAVVTIDNDGIRIVQAENETIIKWDQLDSPPNL
SLSIDGGCLTFISQGKNHRYRMLGYFTPFKYAKRFFPFWANQNAERLQDF
LSDAYIQCTSTFLRDSSIENIRAVVRNEIKRWKGWDKVEGLSELAHKTVT
QLTNIHHWSSADIEKIRQRYVNKQLAQYQTFFDSVESNPLTNRQRIACVT
DNDNNLLLAGAGTGKTSVMIGKAGYLVNSGKASPKQILMLAYGRIAAQEM
NERIKEKLGFDDVKASTFHSLGVKIISEVEGKAPSLSKLEDNPKVKAKWM
HDEIEILMRDNNYRKALLDYFSSYYFVDKNPWEFESQGAYLKYLNDNEVQ
TMNGEKVKSYGELVVANWLFRKGIKYQYEAKYRFDVATEKYRQYEPDFYL
PDYDIYIEYYGTDENGDTAPYINRERYQQGIEWKRKTHKQYGTGYVEVFY
HQHKKRKLPQALEKE
>VF0433 hypothetical cytosolic protein
MSSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQI
KEWNPDLIVVGLPTDLHGKELDTITPRAKKFANRLHGRFGKQVELHDERL
STAEARADLFEFGGYKALSKGNIDCQSAVVILESWFENQWG
>VF1538 hypothetical protein
MKKLYRYVLFTFLLIFSQLSFANWDLTDNQPIEISAQATNIEADIRALPE
QHFFSNNDYAQVKRLLSTTISQQKEHATALKEALATYREDSSNQNWIAVE
TVHQSLTSLNLSKEQLLKLTNSTTREQLTGFGPYGVTQFYSELSITKLNI
EYYLHYQIRSFKNLLKDLTISPVPIISVIFKVLCVFFIFSWWMKNSSRLI
NDFKTSKLENGTKPNFFIRSIWYLTRAHKAIAWLLLITVTLRIVSTLPSL
QHLIFLEIFTWWILGGSIAVSFILEFIYRNSKHNKKEIIALRLSTVRHYV
WGIIVAGVILQISSRTLGQGTIYAWINSLMYLFFVLLTIHTLRKWKPTVF
ERIERVDPLPLSIQWAKRNQKTFLISIAATACGAAWLSWRALQHSIIALL
SQYAAFSHALAYLFRIEVAKQTEVAREQSNLVRVKGTAAFDYIAPGSEDS
ELIEDYAKDEMSALSRYLLTESPAVCVLSGERGVGTTTLLNRILNKVKNA
TPIYINCPYDGYSALLPELAKQLGLDEESSERDILQYLRNSDTCYLLAFD
SAQRLVKPKVNGLADLMKLTNLLRRARKSHRVVLAIEKSCWRFIDRARGE
RLLFDLVTFMPKWDEKQIGQLLESRITLSEGQPTISFDGLVLPRQWDEEN
LTEEERARNGFYRILWDYSDGNPTVALRFFRLSLHRDKDTDAILVRLFRA
PHSDDLETMPKPMLAVLRSIVQLEVASPADVCDCSRLSMAEVISTLRYFQ
SRGYIEWSDDKARISDHWFRHITNVLHRQHLLVK
>VFA0395 hypothetical protein
MLLERIEVSGFRGIKRLSLSFEQLTTLIGENTWGKSSLLDALSIALPISG
ELHQFTLKDFHQDHSISYTQDQHIQIIITWQTTEKNEHKAGRYRKLSSLW
QHDANSNTQRIYYRVSATNNDGKITSSSSFLDKDGNVLRYHRIECLVYEL
IKLHPVIRIRDSRRLSPGPFTDHVPDDRIERRINNTCRRLLTAPGQVSSG
EIKSALQSMQSLVDHYFSFRNHRRHGQHKVRDDLFFGQKAEGVSLNQFVN
QNQSKQTKLLLLGLLNTYLRAKGPNTLKQSARPVMIVEDPEGRLHPTQLI
QAWTLLNHIPMQKILTTNSSELLSAVPLSSIRRLVRESDSTSSYALTPTS
LSRDDLRRITFHIRFQRSNALFARCWLLVEGETEVWLFNEMARILGYNLA
AEGVQIIEFAQSGLKSLIKMAKALHIEWHVVTDGDPAGKKYAFAVKNQLE
NEHERHRLTELPHKDIEHYLYHHGFEELFRTLSNISADQPVPPKKIIVKT
LKKYAKPDVALAIVEHCEEMGPESIPLLLRWTLKRTVTMAKGQG
>VF1007 primosomal replication protein N'
MTNFTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCIN
EAKATLGSIQREEKANILTAQRAEYLTQMLVAQIEAIQREVATQRIRSNE
PRPKGSYKKPISDMYQDLAQHQEWERRLAQMVNDQELAINQCHSFSQQQD
LQQKLLATEKRLQRCKEAMIRLEQQITYREQHD
>VFA0548 DNA integration/recombination/invertion protein
MARQVIRLTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDP
VTRKIQKIALGPYPELSLANARSKTTEYRTLLAQKINPKSFEQSKELEAK
RVQTSTFIVVAEQWFERKKETVSPAHSYREWRTLEKYIFPHMSKIPVATI
TAVETIDVLRPLEKEGKYSTVKRICQSLNQIMDYSVNHGLIHANPLAKII
KVFRKNTVLHMPTIRPEQLPDFLKRLHSCSTIQTKTKLLILWQLHTMTRP
KEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIRLQS
KRCDYVFPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALH
EYGFDSLLIEACLSHADQNEVRASYNRSDYLEQRKEIMCWWSNYIDEAA
>VFA0553 ATP-dependent RNA helicase
MTGYLSIILEIGVQLLQFKDLGLDNRLLKNLAHQNIKTPTEIQRKAVPVA
IAGKDVLASSKTGSGKTLAFVLPMLHKSLKTKSFSKNDPRAVILAPTREL
AKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRKHPKFIVATPGRLA
DHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMF
SATLDHDAVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLCDHLDHKQA
ILNKIIETEDYFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTAR
NNIMSQFERRVHKILVTTDVASRGLDLTSVTHVINFDMPKHMEEYVHRVG
RTGRAGKKGTAISLVGPKDWESFKRVETFLQQDLSFSVFEELKGKFKGLK
PKHKRTFVKKGDPKKFKAKGNQNKPKAPKKRDNSFHTNVAVGDQVFMPKK
KPKQIVVDDE
>VF0070 ATP-dependent DNA helicase RecQ
MSSMIAEQPMEEVSPSYTVLKDVFGYQEFRVGQEEVINAVLDSKDCLVIM
PTGGGKSLCYQIPALVFEGLTLVISPLISLMKDQVDQLKANGVKAECLNS
TIEREEQIAIWNRVNSGQVKMLYVSPERVMMRDFMDRLESLNLCMIAVDE
AHCISQWGHDFRPEYASLGQIKQRFPSVPIMALTATADEATRKDILHRLS
LPEPHQYLGSFDRPNIRYTVLEKHKPVSQIVRYLATQKNQCGVIYCGSRK
KVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFG
MGINKSNVRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVW
LRKLVEEKPEGPQKLVESHKLNAMTAFAEAQTCRRQVLLNYFGEYSAKPC
GNCDVCLDPPKQFDGTEAAQKALSCVYRVNQSFGVGYVVEVLRGLKIARI
REHGHDKLSTYGIGKEHTHEYWVSIIRQLIHKGLLVQNITRNSTLQLTEE
ARPILKGQEPLELAVPRLDIAAKTAKSEKLNNRNYDKQLFAKLRKLRKSI
ADRDDLPPYVVFSDATLMDMADILPTSYGEMLAVNGVGQKKLEKYADPFL
DLIEMHLTGQG
>VF0068 DNA helicase II
MDVSFLLDGLNDKQREAVAAPLENMLVLAGAGSGKTRVLVHRIAWLMQIE
QASPFSIMSVTFTNKAAAEMRGRIEELMHGSAGGMWNGTFHGICHRILRA
HYLDAKLPEGFQIIDSDDQQRLLKRLIKAQNLDDKNWPARQAAWFINGKK
DEGLRPHQINSFNDPITQTWLKVYSAYQEACDRAGLVDFAEILLRAHELL
RDHKHIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGSDCDVMIVGDDD
QSIYGWRGAQIENIQKFLDEFVGAKTIRLEQNYRSTANILNAANELISNN
TERMGKKLWTEGVEGDLISIYSAYNELDEARFAVGKIKEWRDNGGALEDS
AFLYRNNAQSRVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYLRLMNN
RNDDAAFERVVNTPTRGLGDKTLETVRFAARERGATMWQASIALIEEQVL
PGRAAGALSRFIELINALEDDTRDCRLHEQTDQVIKSSGLFAMYEQEKGE
KSKARIENLEELVTATRQFEKPEEAEEMTDLTAFLTHAALEAGEGQADEF
EDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIKEIPTECVEEVRMKAKV
SRTGSYGSYGQSASSDSRFGQKAVNNNFNETGYALGQRVKHPKFGEGTII
NFEGAGPQGRVQVAFNGEGIKWLVTQYAKLESM
>VF1557 ATP-dependent helicase HrpA
MSLLPINALYDEFSSLVNHKNLVVESETGSGKSTHLPVWAAEHGRVLVVE
PRRIACTALADYLSTQHEQTVGDDIGYAIKLDAQYTDKSKVVFVTPGIAL
KWFMEDRLVDFKIVIIDEFHERRWDSDLLLSLLKLHQQHRLILTSATMDS
TSLAQYIDADVLKSKGRQYPVTHRYISTHSQDMPSNKDLEVRILNILMSL
SAQNEHGDVLIFLPGKKEIQQCIQVVRSKFQDVLILPLYAGVSDDIRQQV
LTPSGQQRFVFSTNVAETSLTIPNITVVIDSGLERRTHQRNGRTTLSLQA
ISKANVSQRSGRAGRTQAGTAIHMYGEFAPLEKTTPPELQREELVEPMLA
AASCDFVLRNMPFLEVLPMASLSNAELKLQAMKALNEQGEITDYGRRLFP
LPIDTLFSHMLSVIIGKAEKETIVDLVSALSVSNKLYSISKKQDALEEFT
RWNPKGCDLITLISIVRGHSCEGVIVDKELQSEARKLSIQIRDELGLPDL
EVSSRIKREEVLLQLVEKLPELVFVRREKRKEAFGNEKQEVLLGRNSCFP
SSYEAALVFDQFSLPGRGSKQTLTIATALAPIDLSLVLNSGLAECRSGEV
INQDGEFKIIHEYFYANRKLKTEFVAPDNTDNIAVILNQVDSGLLMPKLK
EAREKEIAAWKLYCQLNNKEVSSVTFESWFKEQLEALGVSSIDEMELFDE
TDFVFHGIPEWELQDFLDSYPQKVVLPDLVLSVEYFPRSKRILLHYHKGQ
RKGDVKRWELPSWSGWKLQYKKASRTVDIK
>VF2163 ATP-dependent helicase HrpB
MSQLPIETVIPSLIEKLKHHSQLILKASTGAGKSTFLPLTLLRDNLIDGK
IIMLEPRRLAARNIANYLASQLGEKVGEQVGFRVRGEAKVSSRTRLEIVT
EGIMTRMIQSDPELSDVGLLIFDEYHERSIHADTSLAFALEVQDALREDL
KLLVMSATLEQAALQKLLPNAAYLESDGRLFPVETRYQPLKANQKLLDAT
ENAIRQTLINETGSILVFLSGVGEIKQLEERLSDLSSEVILAPLYGQLEI
RKQQQALMPAPIGQRKVVLATNIAETSLTIEGVRVVIDSGYENKASFDAK
TGITKLEKKRIAQSASEQRKGRAGRLESGICIRLYSESQFKQQALVPTPE
IESSDLSSLIVELAKWGVTQPSDLQWLTLPPNTNVQQAKELLKQLGQLDT
QGQLTVFGEQSQHLGMDPRLSTILLRAKEMSLAHLNTALFLLPIIEEPAK
SIKSKDVSYHLSLLLDGKYPKSNYYHQRAHRLAKMLLVNEDKELASPNCV
GEVLVNGFPDRLAMAKGNSGQFQLSNGHGVQIDELENLAQSDYLVVVDLL
KGVNNRSQVLLGVSLTLSSLLDSCSDLLSEVEYVDWDEKNSRMLAEQRTQ
LGALVIKRQLIKSPDESKISEALLRMVQRQGLSSLNWSDTVEAFHSRLLC
ASIWLPELGLPLLDETHLLNDVDKWLQPFMNHIKSDKQLKELNIMEALEA
YVGWNNMQLINEYLPSHYVLPTGTKAKIQYQLQSEPKISVRMQEVYGEAE
TPLLAKGTKKLMMELLSPAQRPLQTTSDLAGFWQGSYKEVQKEMKGRYPK
HIWPDDPATHQATKKTKRHFN
>VF0444 ATP-dependent RNA helicase SrmB
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTG
TGKSAAFLLPALQHLDDFPRREPGPARILILTPTRELAIQVADEARQLAK
YTRHKVFTITGGISYQDHADILATTQDIVVATPGRLMEYIEAERFDCRAI
ETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRGVEGFTA
DLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKNILTEQAERSI
VFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVL
IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLI
EAHDQPMMERVGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKA
ALAKKKAPKKKKK
>VF1268 hypothetical protein
MFALVDANSFYCSAEQVFRPEWRNRPIIVLSNNDGMIVAANRQATEAGIP
KFKPYFQIKKQCEDKGVIALSSNYELYSDLSSKMMEVIGRFAPEQHIYSI
DESFLSFKRSFPAIPCLRSHANQLRKAVWKECRLAVCVGMGTTLTLAKVA
NHAAKKFAGYHGVCVLDNEQERLNALHLLSVEEVWGIGRKLSERMHQMGI
HTALQLTNMPIGLVRKNFNVEVERIVLELNGTPCKS
>VF1758 integration host factor beta-subunit
MTKSELIEQLCSKKPQLSAKQVEDTVKEILEQMATTLEGGDRIEIRGFGS
FSLHYREPRLGRNPKTGDKVELDGKFVPHFKPGKELRERVNYS
>VFA0132 hypothetical protein
MKVEAVGKIQMESIEREKSQEVLKNSISNMKMQNEGVYDQQAINFALKRG
EIKEQEIESRVNRLKIYMDKQRELNNIA
>VFA1158 hypothetical cytosolic protein
MIEKFLAFSEKKSAVHFVIPEDASLTSPIACSDIDNALSAMGIGHYYQYQ
SSINEIIAAINNGDITSFNNVMIAQCLDAQLVVHMQDDEMKASMTVTGAY
GGHPVRGPEIIQALTENGITKGVKKEALKVLLLKGKDLAPGETYSDVIAV
GREAVEGQDTQFEALVPNIHERVLQPQETDDGHVDMRDLGNVISVKQNTP
LMRRIPATQGTSGKTITGKIITATPGTDTPFQVYPGSSISPTDPNLLIAD
IDGTPLINKSGVGIDNLLTLKTVNATSGHVSFEGSIFIQQDIESGMKVTA
TGSITVGGFIENAEVTAKHDITVMHGIIGRPVQDGEPLTCIVSSEGTITS
KLAQNAHLMAHKDVHITLHANHCLIESLGSIFVIDKAERNGTISGGNLIA
NGAIKTANLGIEGGAYTKVQAFHDFETQKEGLHLLQKQINEVKTQLIKIS
NIQMEQQPSELAEKILRSKEKSEQDLQVLGSKLQREQITFNNGLKDNTVF
VTNKIFPRVDVQFNTHHLVTKREYSPSKISYSGYEIDVEPIMIKKK
>VF0450 single-stranded-DNA-specific exonuclease RecJ
MIEVKRRTVPSSTQLPDSIPPILQRIYAARGITSSSQLERGAKFLLSFQS
MHGISKAVDILVEAIQKQTRIIVVGDFDADGATSSALSVMAFRMMGSQNV
DYLVPNRFEDGYGLSPDVVDQAKEMGAEIIMTVDNGVSSIDGVLKAKEYG
MQVVVTDHHLPGAHLPLADAIVNPNLEACAFPSKSLAGVGVAFYLMLAIR
ARLREINWFEKQNIAIPNLADLLDLVALGTVADLVALDENNRILVHQGIQ
RIRAGKCRPGIQALIEVANRVPSRIVASDFGFALGPRINAAGRLDDMSFG
VELLMSNNIHAARRMAAELDSLNQTRKEIEQGMKEEAMAICERLEFGAQS
ELPFGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFADGGDGFIKGSCRS
IAGFHMRDALDLIDTRNPGLILKFGGHAMAAGLTIKEADYKKFSQAFDDV
VRESVEEEALKGIILSDGALTPEEFTLGTAEIIRAGGPWGQAFPEPIFDG
EFKVLNQRLVGEKHLKLMLEPIHRDFPTNKMVDAIAFNIDVRRWPDASVQ
KVKLAYRLDINEFRGNQTLQLMVENIEPL
>VF1998 DNA repair protein RecN
MLAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDRA
EASMVRQGEEKAEITVLFTLENNINAKRWLEDNELYDGNDCILRRVITKE
GRSRGFINGSPVPAAQLKTLGHLLINIHGQHAHHELMKPEYQLNMLDQYA
GHVSLLNKTRSRYQAWRQADNALKQMIKHSQQNEAQKQLIEYQIKELNEL
ALGEEEFTQLEEDHKRLSNSGELVECSQQAISILYENDEVNALQLLQYAN
NHIQQLGQLDPQLAPLSEMLNEAMIQVEEANHEIKNYLDNIDVDPEQIAF
VEERFSRVMSMAKKHHVLADELYEHHQQLLAEYDRLDCSDEKREQREQEV
EELKQHFLEAAHKLTKSRQRYAKELNNKITDSMQTLSMEKAVFDIQIESD
AHTKISPLGIDTLCFKVSTNPGQPLQPIAKVASGGELSRISLAIQVITAQ
KVDTPSLIFDEVDVGISGPTAAVVGKMLRTLGESTQVLCVTHLPQVAGCG
HNQLFVAKHTKSGKTETQMRALNLEERVEELARLLGGTQITAHTLANAKE
LLNAA
>VF2325 DNA mismatch repair protein MutL
MPIQILPARLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIEKGG
SKLIRIRDNGSGIPKDELTLALSRHATSKITSLDDLEAIVSLGFRGEALA
SISSVSRLTLTSRTVAQEEAWSAYAEGREMNVKLKPAAHPIGTTIDVVDL
FFNTPARRKFLRADKTEFTHIDELLKRIALSRLDVTINLRHNGKMVRQYR
AAQTKPQIEKRLAAVCGANFLQHALEVELEHGELKFHGWISSPEGARAQG
DIQYCYVNGRMMKDKLINHAIRQGYESSLPANQYAAYILFIEINPHDVDV
NVHPAKHEVRFHQARLVHDFIYQAIFGALQQGASLPDVVGHIQSEAEEQQ
LESKESYFPPMKEYVRQPQQTHYPKSEQLRAAVESTPSYPNKAPLDSWIP
KGNVGSSSSNSTAPSRSFHTDKPTKKALSNYNELLTTQNREQRESTSQVN
EQSHTFRSTQQIERVAPQVTQVSKNGITLGKVLSVVESTFALLQQGKQLQ
LLNLRYAEFVKIYGQLSSVNVEPLKPQPLLIPLSVGIDESICNNLSNYAS
LLKSLGIDLKVKNRTNIIVMAVCQPIRQQNLQQLIPNLLRYLEQINPSLE
QVIKWLSHQIQHDEVSYTTAQAIQLVMELEQLWGDELNNFYPKLLKDIDI
TQVIQAFSHE
>VF0270 superfamily II DNA/RNA helicases, SNF2 family
MSFALGQRWISDTESDLGLGTVVAVDDRTVSLLFAASEENRLYAKHDAPV
TRVMFNKGDTIESHEGWSLDVEDVIEEGGLLTYIGTRVDTDEANVVLRET
LLSHQIRFNKPQDKLFAGQIDRMDRFALRFRALQNQYEQHKSPMRGLCGM
RAGLIPHQLFIAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLSGRA
ERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYADSENPFDTAQ
FVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIE
AIAEETPGVLLLTATPEQLGHESHFARLRLLDPDRFYDYDAFVEEERQYQ
PVADAVTALMSGEKLSNDAKNRITELLSEQDVEPLFRIIESSAAEDEQAQ
ARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYATSM
RVATMMGGRMTDEARAMKMLYPEEIFQEFEGDSATWWQFDPRVNWLLELL
KENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKAAA
YFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQKRDIEIHVPYLQGTSQELLARWFDEGLNAFGETCPTGRAVYDKFAD
AIIAILATGKSDGLESLIEESATLNKALKSQLEQGRDRLLEVHSNGGDKA
KEIAEQIAATDGDTNLVNFALNLFDTIGLNQDDKGENAIVVTPAENMLVS
SYPGLPYEGCTITFDRETALSREDMNLISWEHPMIQGGIDLVLTEGVGAT
AVSLLKNKALPAGTLLLELVYVVDAQAPKQSGIARFLPKTPIRIMMDGKG
NDLSAQVEFESFNRQLSPVNRHMASKLVNSVQKEIHGLIDKAEISMEERL
ESVRTDAEKEMKAALNSELERLQALKAVNPNIRDEELTQIGNSNERTIWL
YW
>VF0581 exodeoxyribonuclease V gamma chain
MFTVYHSNQLDVLKSLVVELIRLNPLDNPFEQEQILVQSPGMSQWLKIEL
AKELGIAANLTFPLPATFIWDLFTQVLDDVPKRSAFHKEAMTWKIVTLLP
ELLKQEEFAPLQRYLENDKNQLKCYQLAAKIADIFDQYLVFRPEWIQQWE
AGEEVVELEGEHPWQPTLWRALYDQTLALGHSPYHRANMFEHFIETLDNY
LQTGTLSKGMPKRLFVVGITSLPPRYLDALAALGQHIDVHLMFTNPCRYY
WGEIRDRKYLARLEARNRLQVKWLDDHSEHIGDTEQLKGSIEANFEDELH
TSEVGNSLLASWGKLGRDNLCLLSEMEAQEIDAFVDVGNDNLLHSIQSDI
LNLEERSRDDVLDNSQHKQPISSDDRSILLHSCHSPMREVEVLHDQLLDM
FASDPDLKPRDIIVMVADINVYSAAIQAVFGNAAFDRYIPFAISDQSAEQ
ENPVLLAFMTLMALPENRCGLSELLTLLEVPAVMSRFKFNAEQFEIVKRW
AEETGIRWGLDNSTSAQFDLPEHNQNSWLFGIQRMLLGYAMEQGAGLFEG
MASYEQVQGMNAEIAGNLAQFIDQLLTYQIILGQPHAITKWRTTINQLMD
DFLDVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLS
GGKASQRFLAGQVNFCTLMPMRSIPFDVVCLLGMTDGSYPRTMPVEGFDL
MQKRMKPGDRSRRDDDRYLFLEALQSANKAFYLSYIGRSIRDNTEKAPSV
LVSELLEYCQQGYCLEGDNELNPEASAKRLVKQLTIEHPLVPYSQQSFIG
DNISYASEWLPTAKLEGAAAPEFQTAPLVYAPETKELELTELQRFWRLPV
AYFFNRGLKVFFESVESRVEDDEPFTIDGRTGYGMKSDLLEDLLAYDDPN
HVSQISRDFYQQQKAQGKLPIGSFGEITADKEVNTVKDLVAHIQPLTTLP
LDDQEVRLRFAFPHGEMELQGWLKQRYQAGMLRYRGGKIRSHEILATWID
HLCLCAMGQQQLTHLFGTDAIYHFGTIEKEKAYQELETILSLYISGNCAP
LAYLPKAALAGLEAHVDKKGVWNDDEETHQKALKKMADEYNGTRFAGENS
NDYVIRMWPEWNDEFGQVIFDNAQKVLRNALLHSEKEKL
>VF0341 excinuclease ABC subunit A
MDKIEVRGARTHNLKDISLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
ITEIYDYLRLLYARIGEPRCPEHHVELTAQTISQMVDKALELPEGTKLML
LAPIVKERKGEHVKTLENLAAQGFIRARIDGEVCDLSDPPTLELHKKHTI
EVVVDRFKVRDDLQQRLAESFETALELTGGIAVIDYMDDSEHDPLIFSAN
FACPHCGYSMQELEPRLFSFNNPAGACGTCDGLGVQQYFDADRVVLDDKL
SIAEGAIKGWDQKNYYYFQMLGSLAKHYGFDLFAPFKSISKKFQNIILNG
SGNEEIEFQYSNDRGDLRVKRHPFEGILNTLDRRYKETESSAVRDDLSKY
ISTQSCSSCHGTRLRLEARNVFVGDTTLPEICEMSIQDSMAFFSSLTLQG
QKAQIADKVMKEINERLHFLINVGLSYLNLSRSADTLSGGEAQRIRLASQ
IGAGLVGVMYVLDEPSIGLHQRDNERLLKTLNHLRDLGNTVIVVEHDEDA
IRSADHIIDIGPGAGVHGGHIVAEGDYEAIISNPESLTGQYLNGTKEIAV
PNERVKADPKKQVELIGATGNNLKNVTLKLPVGLFTCITGVSGSGKSTLI
NDTFFKIAHTQLNGATTSEPAPYKKIKGIEHFDKVIDIDQSPIGRTPRSN
PATYTGIFTPIRELFSGTPESRSRGYKPGRFSFNVRGGRCEACQGDGVIK
VEMHFLPDVYVPCDVCSGKRYNRETLEVKYKGKSIDEVLQMTIEDAHTFF
EPVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLARELSKRDTG
KTLYILDEPTTGLHFHDIQQLLTVLHRLRERGNTIVVIEHNLDVVKTADW
IVDLGPEGGQGGGEIIAEGTPEDVAQVEGSHTARFLKPMLK
>VFA0603 hypothetical cytosolic protein
MTEKKNTWFIYLIRTRVGSLYCGITNNLERRFKMHQNGKGAKYLKGKGPL
TLVWQHDVENKSIALKYEYRIKKMTKASKEALVINQIPLPTIND
>VF1935 DNA polymerase III, epsilon chain
MNASNNSSNRIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGN
HFHVYIKPDRLIDLEAIDVHGITDEFLYDKPEYKDIHDEFLEFIKGAELV
AHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFPGKRNNLD
VLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGENSSDS
DEETIKRLNSGRKGLKVLRATADELEAHEKRLDIVGDACLWRS
>VFA0126 DNA-3-methyladenine glycosylase
MSIEKFESIYERAALRKGGTAQLELLLNKPLPRSELAKIPDDRWLAAFTE
KVFQCGISWNVVRKKWPNFEEVFFQFRIQPLLMQPDEVWEEKAQDPRIIR
HLTKVKTIPANAMMIYSAGLQHDSFGNMVANWPSEDITGLWAYLKKHGQR
LGGNTGAYALRQMGVDTFILSSDVESYLRNYGIIDGGRDTKRVHLAANQA
FNQWKEESGRSLSEISQVIAYSCGDNRVLVSASEQ
>VF0815 SeqA protein
MKTIEVDEELYRFIASQTQHIGESASDILRRLLMQSSPSDLAVSAPVEVQ
KKGIVVSKDAGKEASVDRVKAVRTLLISDEFSALDKAIDRFLTVLSELYK
IDSKAFSEATEVKGRTRVYFADNQETLIASGKTTKPREIVGTPFWVITNT
NTNRKRHMVELLMERMGFQHDLTEKVCAAI
>VF1733 putative deoxyribonuclease YcfH
MLIDSHCHLDKLNYDDLHVNVADVLDKAKKQGVEQFLTVGVTLDAFPNMM
NMIAEHPEVHASCGIHPLDVDSAFDLSLFRQYAAHERVVAIGETGLDYFY
QPESAPRQRELFEQQVEVAVEYNKPLIIHTRQAREDTLAILKNGKADKCG
GVIHCFTEDWAFAEAAMELGFYISISGIVTFNKASELKDVVRRLPLERLL
VETDSPYLAPVPFRGKENQPAYVKEVAAYIALLKGKSVEEVAQTTTTNFK
NLFLNK
>VF1044 RNA-directed DNA polymerase
MYQLEPIKKTKQVIASIPNLCSALDITIDELNKALSLSSEERYVQGKVSK
SDGSYRDVYNPHNLIRKIQRRINRRIFIKLVGWPSYIFGSIPNNIDKNGK
VLEAKDYVNCAAQHCLAKSLLKMDLKDFFNNIHIDHVKEMFEKFFNYPKD
VSEALSNICCRGDSLVQGALTSSYIASLCLWDLEPHLVKRLKRKQLIYTR
LVDDITVSSKISNFQFDMTIEHITSMLHEMDLPINNSKTKVAYTSIEPLT
VHGMRVNFKEPRYPSDEVRRLRAAVHNIESLASEPGYRVTFAYRKDFNRC
MGRVNKLKRVEHEKHQTLVNKLLKILPLPSEKDLKRCKASILRLETDFPL
KGDTYWYRKRFYIVHDRLNVLQRTYKRTALKLRNRMKPIRPEYDD
>VF1734 DNA polymerase III, delta' subunit
MVFVIVCELIKSRTHPDLHWIKPETEGKSISVEQIRQCNSWALESSQFNA
KRVIIIDPAEKMTESAANALLKTLEAPPKNCQFVLLADSPHQLLPTIRSR
CQVWHQSKIDAESITIWLKETENLSVSMQSIALNDSLPLAVKSFYQDKKQ
ALHKQLLSDFESCVKSDFCQTADVVKTVLKLESEGLTWLSYLLADIQKRQ
MGVMQPWVHCDEIKLIESLAKILSSNVVYKQYIALNSLQEQLDSFPGLNK
ELLLTQWMFEFTGELSVN
>VF0594 exodeoxyribonuclease IX
MAIHLVIIDALNLIRRVHSAQPNQDDIQAVITTTTRTINKILKETEPTHI
IAVFDHHLQDRGWRAEILPQYKEDRKPMPEALQKGMDDIQEAWWKLGIDS
LLSDGDEADDLVATLANKVAMHNEQVTIISTDKGYCQLLSPTLRIRDYFQ
HRWLDAPFVEKEFGLKPEQLADYWGLAGISSSKITGIPGVGPKAALEILT
QFPTIEAANESEDLPKKYRKKFDEHYETAILCRQVAGLRTDIELGFNLQD
IRYEKGTRD
>VF0126 DNA repair protein RadC
MSLMNLPEESRPREKLLALGPKSLTDAELLAIFLRTGTQGMNAIELADKL
LKEFGSLRKLLSSDENEFCSHKGLGTAKFAQLQAVVEMTERYLFEKIEKE
DALTSPEHTKRYLTRMLRDRHREAFYVLFLDNQHRVLKGEILFEGTIDVA
AVYPREVVKRSIDYNAAAIILAHNHPSGVAEPSQADRRITKRISDAVELV
DIRVLDHFVIGDGEIVSFAERGWI
>VF0534 DNA mismatch repair protein MutS
MILNMTSFFLDVLIIHPLFVLTVCFASYPLDSSHLNSKFIYSIFDCRLDS
RILSTKCILHLLGLVVAIKSTEKHTPMMQQYLRLKSENPDILLFYRMGDF
YELFYDDAKRASQLLEISLTKRGSSAGEPIPMAGIPYHAVEGYLAKLVQQ
GESVAICEQVGDPATSKGPVERKVVRIVTPGTVTDEALLPERFDNLIAAI
YHHKGQFGYATLDITSGRFKVSEPNTEEAMLAELQRTAPTELLFSEDFEP
VHLLEKRNGNRRRPVWEFELDTAKQQLNNQFGTRDLVGFGVEKAEFGLCA
AGCLIQYVKDTQRTTLPHIRSIIMDHQDDSVILDAATRRNLEITQNLAGG
FNHTLAEILDHTSTAMGSRLLKRWLHQPVRTHDVLNQRLDAIGELKESGL
FADMAPQLKNIGDVERILARLALRSARPRDLARLRNALQQLPELSQTTQE
FQQDHLLTLAASAQPIDSICELLERAIKENPPVVIRDGGVLADGYNEELD
QWRDLANGATQYLEKLEQEERERHDIDTLKVGYNNVHGFYIQISKGQSHK
APAHYVRRQTLKNAERYIIPELKEHEDKVLNSKSKALAIEKRLWEELFDQ
LLPHLEQLQSMANAISELDVLSNLAERADTLNYCRPVLTKETGINIEGGR
HPVVEQVMSDPFIANPIKLNPDRKMLIITGPNMGGKSTYMRQTALIALMA
HVGCYVPADSAEIGTLDRIFTRIGASDDLASGRSTFMVEMTETANILHNA
TKHSLVLMDEIGRGTSTYDGLSLAWASAEWLATKINAMTLFATHYFELTE
LPNLFTGLANVHLDAVEHGDEIAFMHAVQEGAANKSYGLAVASLAGVPKS
VIKKAKQKLQHLESGQVPVPATSTTVKEEHQLSLIPEISEVEEALAHVNP
DDLTPRQALEELYRLKALL
>VF2382 DNA polymerase III, epsilon chain
MNYLQRLWWQYKLRSHKNLSLFHHYSGDELVSIDCETTSLNPNHAELVSI
AAIKIKNNRVLTSQTIHLKLTPPQSLNSDSIKIHQLRHQDLHHGLSEQQA
MTQLLEFIGNRHIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHIYHN
KLERLLPNAYYDLSIEAISKHLGLPQADRHDALEDAIAAALIYVRLTHGD
FPDIPSSKNAHSY
>VFB45 single-strand DNA binding protein
MMLSKGVNKVILLGHLRQDPEISYNRFGKIIAHFTLATEESWQDKATGQQ
RENTEYHRVVVLGRLAKVIKSKTKKGTQVYLEGKNKTIKRQDDNGKDYYL
TEVMVGEHNGVIQIAK
>VF1168 exonuclease SbcC
MRILSLSFSNLNSLKGEWKIDFSASPFAENGLFAITGPTGAGKTTILDAI
CLALYHKTPRLGGISTSSNEIMTRGTAECSAEVEFEVKGKAYRAFWSQRR
SRGKVDGNLQAATVELAEVDSEKVLATQVKKKDELINTITGLDFSRFTKS
MMLSQGQFAAFLNADANDRAGLLEELTGTEIYGQISEKVHEHYTASKQKL
AELKAKAEGVELLSEEDKQALIDEQTELQANQKQQQAQLVEWQAHVEWWN
AEVKNQQQHQQAIEHHQLALDKEKQASEPLHRLAQSEPAEKLRAPYQLWQ
EAQERFDEVVKELSLTEVSHQQKTSDKLTLESHVTQLKQVFDDIKVESKT
LEALINDSVQPLDTKISQLTQQSQEKQQNIAHLTTRYEESYKKQQHLTVT
LSDVTETLAQLTSYVEKHQSDVQLERYLGQWKRQVSYISQQDKEVSALNS
KVTSAKATLDALLANMTKKETELHQAQVVVKTEVDALKAAELVLQQSQEK
GTEAQLAEQVAALTNRHQYRVELTHVNNEYLRAIKELQTLEMMQKTQSSE
IQTLEAQRAELGSQFKQLEQQVIDLTTLIEQEGELAKYRAELMKDQDCPL
CGSTHHPLLEQSQSLDLNATMQRKKEAEQKRAEIVEQGKSVREQLDSLKV
KQEHCQSQCVQFQNIVKSTQQQWSTLLEATQLTLNLGDTDTINQSITECE
ALLTALNEQVKQVRQADEKYRAHQNQLQQAQHRLDTVTAGLEYDRKSHQV
AAQLQLDDSVKLEQLQQHDAELKQQLVAEIEQTGFNAPKLAEIESWFTQK
EQDLQRIQQQISEQQRFIQQQQKLQSEHGHLSEQLSELTNQLKTTQAENV
LLTSDLEQQKAKRVELFGMQEVKVARSEMVKKLGDSEQRYQAGQQKLQIR
VQELAVIEGKLTSLKQSHANNDKLTAERSGVWKEALLHSPFETLELFQAA
LISEEERQQLLDLKTEIQQAIERTSALLDSAKQTKEQHYQMPKATEWQLM
PKDTVESELAQVKSISESLVKREGEIAQALRSDDERKTNQKTLFEAIEAY
QSEYDDIQYLHSLIGSQKGDKFRKFAQGLTLENLVYLANKQLTRLHGRYE
LKRKASDGLELQVLDTWQGDVVRDTKTLSGGESFLVSLALALALSDLVSH
KTSIDSLFLDEGFGTLDSETLDMALDALDNLNASGKMIGVISHIEAMKER
IPVQIKVTKRSGLGVSELEKQYKKVS
>VF0422 A/G-specific adenine DNA glycosylase
MLGQHSWIAPSWPLVKRPSRRTKLRILRTILPSSVKSFLVTSVMIGLPGY
SLNKDCGSGIIQSLAQCSSIIFRFPIINRFRLNLSNTQLRLVYLQSKYIS
LLSIGCTNSSQCGAISRIIKMNEHVMTSFSQAILEWYDNYGRKTLPWQLE
KTPYKVWLSEIMLQQTQVTTVIPYFERFMTRFPTIVDLAHAEQDEVLHLW
TGLGYYARARNLHKTAQIIAEQYNGIFPTNIDDVIALPGIGRSTAGAVLS
LSLQQHHPILDGNVKRTLSRCFAIEGWPGKKSVENEMWAVAETHTPKQGV
ERYNQAMMDMGAMVCTRSKPKCELCPVNDLCQAKAQDKQLDFPTKKPKKE
KPVKEAWFAIYYHDGEVWLEQRPQSGIWGGLFCFPEQPTNTLDELSEDYG
FKVASKQQLIAFRHTFSHYHLDITPVLITLAKKPNMIMEGTRGVWYNLSQ
PMTVGLAAPVQKLLDALPYEISNGE
>VF2541 DNA processing protein
MSISEEHLSAWLTLCFCPRVGGKVMSRLLSVDSAENILQYNDDQLQALGL
SSSQISYLKQTTNKQVETCLTWQEKSSEHTILPLTDPRYPKLLSEISAPP
PVLFVKGDALCLSEPQVAIVGSRNASLEGLDCAKEFARSIVQHNYVVTSG
LALGVDGYAHHGAIEAKGKTIAVLGSGLEKIYPAKHRALAQRVSENGALV
SEFRPDAPPRADNFPRRNRIISGLSTGVLVVEAAERSGSLITARYANEQG
REVFALPGSIQNPTAQGSNGLIKSGATLVSSPDDIFNEIGALTECALSHQ
PSLFEQEVITEQLPFPEVFATVGGEATPVDIIAERCQMPVHEIMMQLLEL
ELQGFIAAVPGGYIKKRRG
>VFA0349 DNA polymerase III, epsilon chain
MPDKSLKNKNIITHMMDLFSNRHPLHRLEEQRQALIEQNLTLPDYLVCFL
KSSYPSPKENSNDMAFTVVDFETSGLNPKTDHIVSVGWVHIIDGVIKLSS
AQHHIINEPTSISAEDGHEEREHIARSLHHILPEQQKMGISLEEAMECFF
SNLPSNILVVHGATIEQRFLEQFILSLQLPNLPIIWLDTLRIEQNTIQQN
RYQRDFRLFSLRRQYKLPDYPAHHALVDAISTAELFLAQKKRLFNQAIAP
IGFLYQKSQ
>VFA0522 DNA repair protein RadC
MSNKSSHYLKQQRYQENEILEHAAEILANRYVRGDAFSNPTATQNYLRYK
LGHYEREVFAVLLLDNQHRLIEFKELFQGTVDAASVYPREVVKAVLEVNA
AAVIFAHNHPSGESTPSQADKRITTRLKEALALIDVQVLDHIVVGETCVS
FAERGLI
>VFA0663 integrase/recombinase (XerC/CodV family)
MDIPLDLKPDSQRFTDQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTS
KDEINAFDIPAYLEHLVVKQNVSPNTQKTALNALIFLCREYLQQSVDNLE
FKRSKKATKLPTVFTHGEAISVINELNHPTKLIAQLMYGSGLRINEALRL
RVDDIDLIHKTITIRNGKGNKDRTTVLPESIIPELKTQLEFVKQQHKMDA
INGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQHRRHHML
DRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQELLGH
SDIKTTQIYTHVIGLHFSGTKSPLDFD
>VF0636 exodeoxyribonuclease VII large subunit
MSLDSNPRIFTVSRLNAEVRLLLENEMGIVWLVGEISNLTVPVSGHWYLT
LKDSQAQVKCAMFKGNNRRVNFKPQNGKQVLVKARLSLYEPRGDYQLIIE
SMQPEGDGRLQQEFDQLKMSLAAEGLFAQTAKKSLPEQPKRVGIITSQTG
AALFDILHVLKRRDPNLPIVIYPTMVQGSGAAIQIAQAIGRANSRNECDI
LIVGRGGGSLEDLWCFNEEIVARTIAASEIPIVSAVGHEIDVTIADFVAD
VRAPTPSAAAELVSRDLSAQLQTVAHQKRRLNSAMERYLSHQQRSLSAYQ
HRIEKQHPQMQLNNQSQRLDDLNQRLMNHIQQRLQRQQYRVENLTLRLNN
LSPTKRISQDKLHIEELKRRLLDSMDRNLLMQRHQLALAAEKLDTVSPLA
TLMRGYSITHNQDGKIITSTKQVELGDNITTRFADGDITSTVTKASELN
>VF1626 excinuclease ABC subunit C
MPSFDSKAFLKSVTHQPGVYRMYNAEADVIYVGKAKDLKKRLSSYFRSNV
PSEKTKALVSHIHQVDVTVTHSETEALILEHNYIKQYLPKYNVLLRDDKS
YPYIFISQHKHPRISIHRGVKRKKGEYFGPYPDSGAVRESLHLIQKLFPI
RQCEDSVYANRHRPCLMHQIGRCLAPCVKGIVSDEEYKEQTDFIRLFLQG
KDRQVIQTLVKQMESASQSLNFEKAAIIRDQIQAMRRVQEQQYVSDDSGD
DLDVLGFAIENGLACVHLLMIRQGKILGSRSFFPKIPANTDKEEVFLSFL
TQYYLNHTQGRTIPNRVVTSFEFNSEDLERALTELSGRKVIFQLNPKGIK
GRYLKLADTNALTALTSKSNHKLTMYQRFKQLEEALVLSSIQRMECFDIS
HTMGEKTVASCVVFNQEGPVKSEYRRYNIAGITGGDDYAAMAQVLERRYS
KQLDIDKIPDIIFIDGGKGQLNRAYEVISKHWEDWPKQPLLLGIAKGVTR
KHGLETLVKISGEEFSMPSDSPALHLIQHIRDESHNHAIGGHRAQRAKVR
KTSTLQNIDGVGPKRRQALLQYLGGLQELKSASVEEIAKVPGISHSLAEK
IHDALKHG
>VF1948 ribonuclease HII
MTKKAESKELPPFEYPEGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPI
EGLTDSKKLTDKKRELLFPEIQEKALAWSLGRCEAHEIDELNILQATMVA
MQRAIAGLNITPDFALIDGNKVPELPMAGLAVVKGDLRVQEISAASIIAK
VTRDREMEELDKAYPQYGFAKHKGYPTKAHFEAIEEHGVISEHRRSFKPV
KRVLGIE
>VF1790 ATP-dependent RNA helicase
MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTG
KTASFVLPILEILSEDPTKVRAKRIRALILTPTRELAIQVEENIQQYSKH
IDITSLAMYGGVDYKEQKQRLIEGVDVLVATPGRLLDMYTQRAIHFDELD
ILVLDEADRMLDMGFIEDINKIIERLPLDRQNMLFSATLSDQVRYLAKTA
INNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHLIKENNWNQALIF
IETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYLVA
TGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSK
DDFKNLCMIESRLGHLIVRKEIEGFAPRKEVPISILNYKPKRKPTPKN
>VF0011 DNA replication and repair protein RecF
MPLSRLIINDFRNITTCDIQLSSGFNFVIGPNGSGKTSVLEAIYLLGHGR
SFKSSLTGRIIRNDCDELFIHGRFTTPEQFELPIGINKQRDGTTEVKIGG
ESGQKLAQLAKVLPLQLIHPEGFELVTDGPKFRRAFIDWGVFHVEPAFYD
AWSRVKRLTKQRNALLKTANSYRELSYWDLELAQLSEKIDQWRVDYINHI
SEATQQICQAFLPEYDIKLSYYRGWDRETPYAELLKKNFERDKQLGYTVG
GPNKADLRIKVAGTPVEDVLSRGQLKLMVCALRLAQGQHLTEATGKQCIY
LIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESKMFE
IEHGKIAQG
>VF0009 chromosomal replication initiator protein DnaA
MSSSLWLQCLQRLQEELPSAEFSMWVRPLQAELNDNTLTLFAPNRFVLDW
VRDKYLNSINSLLNEFCGNDIPTLRFEVGSKPVSAPAVPKQTAADVAAAT
SAPAQLQARQSVHKPWESEGAGPVAADLNHRSNVNPKHKFTNFVEGKSNQ
LGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHAVGNAIVDSKPDARV
VYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQE
EFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE
LETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANAN
FTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKMADLLSKR
RSRSVARPRQLAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLR
EESHDIKEDYSNLIRTLSS
>VFA0871 hypothetical protein
MIIDDFVWLPKSDLLIGKLEKLGWKTLFSVKTNDNNIYYCLSSTVYFLDD
KIKQCLLSSICVVNNEYKDCLVLFDEFHDVGFLWKDKKCINLKEQTLLDI
VGSDLDFSLKKNIIRISSINDIVDEADIKIRKYYGFYPLLISISFLILFL
LVGAWLWLF
>VFA0135 DNA helicase II
MAELIPTLNTCLSKMTAGEKRFAQRVENLLEDDYICWYDIPVGRQRRYPD
FIILHPARGLLFLEVKDWKLDTIRNIDASRVELLTSKGIETTSNPIEQVR
QCSYQVIDKLKRDNLLINQDGKYKGNLCLPYGYGVVLTNITRIQLDRAIP
LDAQDSVLPHHLVICKDEMVSTIDPEKFQTKLWNMFNYKFGNQLSLPQID
RIRWHLFPEIRISTSEQQTLLPLEDTNELINPNDHIPEIIKIMDIQQEQL
ARSLGDGHRVIHGVAGSGKTLILGYRCLHLAEQLKKPILVLCFNITLAAR
LRSFINDKGIAGQVQVYHFHDWCGQQIKTYNLDIQKGEAPYWERQVETVI
EGVEKGNIPKGQYGALLIDEGHDFEAEWLTLITQMIDPETNSLLLLYDDA
QSIYKKKSNLDFSLASVGIQAQGRTTVLRLNYRNTREILSFSYQFAKQYF
DNSDTKEIPLIHPESAGITGSHPVVKKFSTMDQEVEYAVKCLVHWKQNGY
AWSDIAIIYPCKHIGKKVAEALKTRSIPHILLATSEHKKQYNPINDVVNV
LPIPSSKGLEFKTVVILNSSNIPKKSDNRSEDIRRLYVGMTRATHNLLAT
YHKENELSESLEAAAISINK
>VF2496 serine/threonine protein kinase
MLLGTSSTQIFYHLLDLDDEQQQKVLDTLKENQPEIHQEITALLGSSPSE
HFSDLLGFHAQQTCHFDWDLSNQTIDKYQLRDELGRGGMGVVYSAHRANG
TFEQELAIKFIQPSFNNLLDKRALFEEAQLLARLNHPYIAKVFDGGEHQN
LVYVVMEKVIGSTLNDFLVMHELSKAQKLHLFSQVCKALEHAHQHNVLHA
DLKPENILIDKQHSPKLIDFNLTQKVKESTIEPQQGVLAFSEQFASPEQK
SGGFLTQQSDIFSLGKILHLLFPVTNENDDIHCIQTKAMQESLDKRYRSV
LELRLDIEAVIASRPISLKQHRPCYTLTCLLKRKPIPSFLCALLMITGIA
FSSLLALKNHQLEQEKIVAENMMYEVTQLLFHSKGSSVSQASINSMLELT
RRRILSNPDLPAHIKQRMLLAMMTPIPTKQKLTTHHFTNNN
>VF0583 exodeoxyribonuclease V alpha chain
MLKQLQHLMDHGVLRPLDLQFAKFIAQQEKNSDSNLLMLLSAITSHELGR
GHVCIDIEQIEQGELFTLPAKYRDALLELVPERSAWAEQLINASTVSNGT
EATPLAFDGTRLYLQRYWAFEQRVSNRITKAAQSVAVNPQLSNTLDELFA
RQYHFLFSALKKLENNNQVSRQQLVCDMLDVVQSDDLDWQAIDTVLLAAT
KSSELETLDQLIPNNHCVNWQKVAAAVALTRRFSVISGGPGTGKTTTVTK
LLASLVTQAKQDNKNIAIKLVAPTGKAAARLTESIGQAVQSIGLAPEVKE
AIPTDASTLHRLLGYIPNQVDFRHNKSNPLHLDVLVVDEASMVDLPMMAR
LLDAVPEHARVILLGDKDQLASVEAGAVLGDICQFTKMGYSQNQAQQLSQ
LTGFNLSAQLHNNAVADSLCMLQKSYRFDARSGIGQLAKAINEGSKFKVE
AVWDKGFSDIRFHDLSNNSYNAMITMMVNGYRSYLGHIHAGDKPEIVLKA
FSQIQLLCAMREGDFGVVGLNQRIEKALKKSDLIPHGDEIWYSGRPVMVT
QNDYGVGLYNGDIGIAMPDPIDQRLRVYFDMPDGSIRGVLPSQLPEHETV
YAMTIHKSQGSEFEHTVLALPAEFSPILTRELIYTGVTRAKKKLDLFATE
KVVARGVMIKTQRNSGLVSLMN
>VFA0515 transposase
MKTKNQKNRNLTITKKDTFNGLSIYKHENGLVINYLDKIYNTIDKAITEY
PRTMVVRVDLRMSKSLLFDNSSVIKNFIASLDSQIQADLNRKKRKGIRVR
ACKIRYVWVKERSTSLSNHYHLVLFFNKDVYHCLGDFKNEDNLSHKIKKA
WCSALDLDINEGSRLVNFPNNGVYWLDKNSRNFDDDFDSLFYRASYLAKL
ETKKYGNGMRSFGCSLR
>VF1641 DNA topoisomerase III
MLFTTSAFFMSRLFIAEKPSLGRAIAAGLAKPQKNQQGYIECGNGDIVTW
CIGHLLEQVEPDAYDDKYKSWRMEHLPIVPDQWQLRPRKASSKQLTVIRK
LLKNATQIVHAGDPDREGQLLVDEVLDYLKLSKTKKAATQRLLISDLNLP
AVKRALTSMRSNQEFIPLSISALARSRADWLYGMNMTRAYTLLGQRGGYQ
GVLSVGRVQTPVLGLVTRRDEEIANFVPKAYYTLDALIPYQNDQLNDGVP
FDIRAKWKPSDACQPWQDEEGRVLNLKLVENVAQRIANQPATVTKAENKE
TKQNAPLPYSLSSLQIDAAKRYGLSAQQVLDACQALYEKHKLITYPRSDS
RHLPKDHYKQREQVCAAIGNNDKQLSTAVTKADFSLKSRAWNDSKVDAHH
AIIPTPKSSSSAGLSGYEEKVYHLIARQYLMQFYPAAVYAEAELVFDIAG
GVFVAKGKQMLFAGWRVLLGKVQSQNSDDDVASKVPPLSKGEVHTCREGE
IKHRMTEPPKHFTEATLLQAMTGIARFVEDKELKKILRDTDGLGTEATRA
GILDTLFKRQLLTRNGKSIHASEAGRGLIHALPNEATYPDMTAHWEFQLQ
GMTEKTHAYRPFMSELEIKVTNFMQGVQQGPVPESLRTLKSPAKPQFKRK
RKAKKS
>VFA1129 hypothetical protein
MEKKTKDSFPYNVLNHPSITSTPLVFASPGLTSIQYAIAQLSLDHNESVM
DFAFEYLQHANLSQAKEFRTRGYNRFLPQFDFSLRDELEQHVQRLESDIE
LHGININSDQLRDVQIIAGKLRSQIECISQVQDQESTQERVEKWIEAHVP
KKIVGEARPLERALGVTRHAKPEEHYGSRKVAQSLVRRLEGALKAMNLVA
QSLSELVINSNSEQYDIHIERELIREMAHDYHKIAPVSPSPEMCSQLHEK
VNTFITDEKLDEKAEVDSEGMYEQAKEAYSAQLSEEELRAEINAITAQSP
KDERRRLWLQIRDERVVSALEQRLTFQNKACDDIQNEITKLDKKLNGVSL
PLIKNIHLQPSSSLPFKGEACTYLAVTEGLLSNALAIIKTDKLKTANRLS
EELKNLKQYLPKEKNQTYSMMSIAAIEKGVQEIKSGVVKATKAVFVSEPV
KALSQQLTKLEKSVKDTNDKVLLVANKAKGKGHVSYRVLDEKCKDKKTSQ
LISDSIVRSVLWQLQQSMADLQQAAQPLLSSSKMLAQIKAPLPENFDHEF
KSTSSPSPLMDILLHKRHLESPEMKMWTKQSTLNEILVKHVEQVKAAVKA
LETNERSDSPIDILAAFKLSFYKKATDLSNELMSALDLSLAEQEEINNRC
HDLLMEGDKPLLERMAKTQFEVIELLNQAVGLATSSPCHFSQVKDFTERA
ILKSLLMKVRLAERSAQETGRDLDDTSRGARIAKHWAMILAEKIEASQAL
PSPGEVLALINRYGLNEETHSSGDPKGALMATRLSAELARAQAGTLLPVM
TPERYAEYEKDLVEFMVAWGQRRFTRGVTEHVFELALSIPTTFMFNIFSP
LYRLPLASLRIPYKVYKTKSLIMPGSDKPYKAIDMMVKKRMKQLGFHMVT
SPMPTVMKTALGGVLAGAGYVYNKHVSGKEQTLDGIYEQVVNGKQSQQLR
MDGLGALALRSVTALSNSGFEVLSDHVQRQVLTLSTPVESFNSPVVEDEL
LDDVWEDSIFDDPMSLELNSDSAVLRRVRRSLDSDDSQSNSPRTSALVDE
YYTRFNGDVLLFKEKAYNKLRGMPLGEARTNYIKVRLKKAQRMVSLAENE
EQKRFLQSAVSILERACDSESDIDCMSVFYPPLSQVDGVLYESINTRFEI
TPKYEHIQMLINYQKSLWSEFLTLDKASFESRLEEEFQKAQQAIGGRFIY
RRHMSSQEELNYHALTLIKHLQVEVNRYNDFEEQVQSLVDDLKSSQMNSD
NYSVSELHQTILERAREGKQSSPYSFDRVMYTLCEQALSIDLKQAEYQEH
IEKITSTIFTDIRFDDYKVSLLPSERIFVRNNLSLSSENLSNEILAYRTG
KRLSLHINIEDIEHAYLNSLEDRLLPDGSLSTRQDQIDEITLHGGLIAYE
QEILRSNRIIQAQRSIELASLSHKFWQDEGISQPNKVSYVYNYPYLPAAD
LYTMPNENAPRAAQIENLEYIKRIEPAYNRVIESKMGPKYLHVVNRDELR
SSEINWDVGHYRQCLEQRLIDLVAAQPEEKKSYLEQVLPRVLTPQRYTTD
KVMSPYFIKPSIHDLPLENMLLLKDGDRYTVISLLPPSGRIEIVTGHDEL
KSLFTDLENHEWVLSHASLYNQMDGRHQYGMESALEGLRAGTSNWSFMSE
TSNHRMSEPDVLRSIARSSMGTQGSGHYLRTNLVEAASNSYWEGISGEHS
IEISGDYSLPDKFNEPNGTASFERLYEVQKQADIQRLAEQAIDQFKEEHF
DVYSAHLKATCYRLIEEAWRKHEDTPLMFRSNLLIDKMRHEFNEVNISLP
GLVGKRGGHVPLEGMMMFHDPDPRKAQYVMVSLLGEGALVEFNSKMEVYQ
FFANPGNRHFLLSHISEYNKQNDVLGVSTPADTLGDLEEQSLNYPSSPPV
GISPYWASTETTFEVPMEPIEARSWDLIGTGLQFAIQEGIHNATTVTTEA
LNLDFIPLSNDRSVNMFDTLANRNLQRLTSDADALFKSHDEWRTEKALEI
TSAVLAVPAVVLSVAAVAASGGAAALPLAAAALAVDSVSFAVSLAEASYI
ISQGDTEEERTMGYIPLALAPLDLLGVASSTNDVLKALKVLKTSRATIQV
ADNLDDIVGATGHTANRMQDGIAHLNTSLTQPSDLSALNRTASNLDTSVT
LSHAVDEQLEQIRCGIEELNDLEIDLNNLTQDYPVGTAPMASLTDFTLDE
QLQVAVQRLSAPKIVRGKWGGMLVDDGGAMSAVRSSHGEYLFSDTPTGAK
SIGISASNEATLMQYLDRYATRQVASDIEELSEIYVRVGPRPGSTRLKGL
FPVEDATKGVINGVTNLSIRTGGIQGPTMIGMQTPGGLAKPLSSVIARYK
KIIGWEKSLSGGKGHGLMLEISPYPGAGMIKVGDGNVSFGDIATALRGSS
QELRPQVASHTSEIGLKGRSMNWNNTPIRRPMLGGEVWEGHSNVLPGSDD
DLRLYLELGGNPEEYLETLKEVEPEISDKGFMEENKRWQGKVESGRFFVK
ESKQGSSWELGNWQQEVNWRFKYRKGLVETTEELDKRILKASRNDTSYGH
SNIVVALNDAKQSGGVEPKVVRWLQASSMDIDSQDYRVAFGLLDRPVNST
LEVGDLSQSGFLHLCDRDESGNKRFHHVIYVHVSSDGIHFYQIDHTSLQQ
ELGQGVILRELKDGGTKLHTKHLLDEDSIAAFNHYLSTNDHNYVFTSVDD
VHRNFVGTQTQIIESNDEFEVVIGNQSRERMQVLSPSKLVGRMTLGGDSS
PILSDPLVQYTDRFKGQVNVQAVSIHADADGFFYYKDHINTNSDRMAHTP
AEFVQYLQTQGIDLTQGSTPVHLLACYAKSSGSAQSLADEIGRPVIAYSN
RKLQINTSVLEDPSLELTSEANKLRQLLAKDDFKPASHRVFYPENSSNEV
TNASSSKDSLPLRSNEFLGNKTIKPRSQFEQSAVDHTAEIVKATYQKYQS
TPLENCENAAREIVDTLKAHPSYSDVRLGNMAFWEGAHGRNADSYMNHWV
VMTKFNGIELVLDPTAHQFSNKLNISTPVLDTYENWVATYQAPLSNKRMM
LVKIAEVPHFSSAPFKSNDEFSGFRYIKDAKVLSSSRWYHQSGYDQYIGS
LIGNVRKTFFEAEPSTAFAQGTFEGSSSILDGGNGQIKYFSRYKQGKIQE
GVFLVSLDSGATWRRGSWKEEAIFRLDSRNAPLALSELDQRINRASNRDS
SYSRICYTGAFNDAEQAGTISPKVAEQLHRVIAKRDEAGQIMMSDNYQAV
FELEGRHQRHFDRSMFKESGFLHVGEVGSDDLVHYDHIVYVHVNESGVCF
YQVNGSDFQLALGDSDEIGINVSASHGKHMMNDTRVAAFERYFAENPEAV
FTFTTVKQVSENVQYKQALAAMVQEGLIDYDTYKSSNDILEAEENVSGFV
PQESTVGTKYVYFPSLNRELINSRFIPLLRHLKRTNAAPFEIVFKNREQV
QGFQRILTETYGSIASSTLEPDLQYLYSVGKTNLHDLSESDTLHINGVAY
IGEFANGEYSNVGPLAQELVAMGLPARAMIKITNKAAPPTYFLTPFSKPN
EEEFDNSFAGQLERELVTLQSERDLGLVSSNSGVVNYQSVDSTILSVIVG
REIYTRGDDSAYCKVRGIIDYFQAQDLERHRVFDPLPTLEKGEVTDTDVG
MNVFDTARRYAENSDPLIRQYNNGQGDIILQKDRYGECSSRTLYISRSLN
SHSFESALSIARQRTSVGKEPINILLLKNMDNINLIEIIGALSRAGQYDK
AFFYTGEPFSNLVEIIKRPDEAIQENEQVLELRVTSLNKEWVAHALHDDP
FIKS
>VF0010 DNA polymerase III, beta chain
MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLE
VELISKITLEGDFEAGAVTVPSRKFLDICRGLPDSANITIVLEGDRVLVR
SGRSRFTLATLPANDFPNIEGWESEVEITLSQAQLRKLIESTQFSMANQD
VRYYLNGMMFETQGNIFRSVATDGHRMAVCNMPVESELPEQQVIMPRKGI
QELVRLLDSPEQSVTLQFGNSNVRAEVNNFVFTSKLVDGRFPDYRRVMPQ
SSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITANNPEQE
EAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKCERVRISMTTANASALVE
DCANDEAQYVVMPIRL
>VF0799 DNA-binding protein HU
MKILKGNTVNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQV
TLVGFGSFVVRERAARTGRNPKTGEAIEISAAKVPAFKAGKALKDACN
>VF2274 primosomal protein N'
MMLTMPYSIAHVALPVPLDRTFDYLIKSEQKPVIGGRVKVPFGRQRLIGV
VTKLSNESEFAREKLKAIDVVIDEQSLWPTNLYKLLNWSSTYYQYPLGDT
LANAMPSWLRKGREANFASLKAWQITELGKNQDLNKLTRAPKQAKALNLV
RHQQCSHEQMLEEEVTAATLKTISDKGWIKEVSLAPTPSYWYRDVEVTQE
KPQLNEEQSIAIATVNANPEFGCYLLEGVTGSGKTEVYLQLLEPILKAGR
QALILVPEIGLTPQTINRFKRRFNVPVDVIHSGLNDTERLNAWLAARDNH
AGIIIGTRSALFTPFHDLGIIIVDEEHDASYKQQDSMRYHARDLAVMRAN
LDNIPIILGSATPALETLHNANVGKYHHLTLTKRAGTAIPARHGVLDVKG
LYLNSGLSAPLIAQMRKHLSEGNQVMLFLNRRGFSPALMCHECGWMAECK
RCDAFYTFHQHSNEIRCHHCGSQQPIIHQCQGCGSTQLISVGVGTEQLET
QLTNLFPEYKTVRIDRDSTRRKGSLEDYLEAIKNNEYQILIGTQMLAKGH
HFPNVTLVGLIDVDSSLFSSDFRAPERLAQLFIQVAGRAGRASKPGEVIL
QTHHPEHSLLQSLLHHGYGHFAEHALKERKFAQLPPYTHLSLFRAEANNN
ENVEQFLRQVRDILESHPQFHDATPVLGPIPAPLARRAGKYRWQLLFQAP
NRTVMQSMLRGAKTAIELLPLAKKVRWTLDIEPQDLS
>VF1049 putative DNA methylase
MLVEFWRVLKPSGNLYLFCGSKLTADTELLIRARFNVFNHIFWAKPSGVW
KRAHKPHLRAFFPATERIIFAGHYDSEGYAKGCSQYATKCNELKKTTFKP
LMDYFKNTKDALNISAKEINEATGTQMCSHWFSSSQWKLPTEKQYQQLQT
LFASKSGQLPKSHSDLTTEYQALHNEYGKLIKEYDELKAEYENLRRPFHV
TAEVPYTDVWTFAPVQYYPGKHPCEKPANLLEHIIASSSREGAVVLDAFM
GSGSTGKACLALNRKFVGIEMEEEMYTKTINTFKG
>VF0055 ATP-dependent RNA helicase RhlB
MAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILI
GTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAP
TERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPS
NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGD
VPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAED
YVHRIGRTGRAGASGNSISFACEEYAINLPAIEEYIEHSIPQSDYDASAL
LEDLPAPLRLQRRPQQNRRNNNGQRQGGNRKHTRPRQPRNTQS
>VF0990 serine/threonine protein kinase
MTDINIDHFIADDSDELNTESTRKEANTLPLPKVINERYKIKRVLGVGGM
GIVYQVDDLLLKSIGLNNYHMAIKVLNSEASHFADADLLLVNEYIQSSHL
HHPNIVSVQHLAVCNESQRGFLIMPVIKGELLSLLLDSPFENIPIDARLK
YAYSLINCIHHCHKRGVIHGDLKPGNILISDSNELFLFDFSISRNLDPEK
NKFTINFNQVHAWSGDYAAPEVLQGNAPTIKSDLYSVAILLYKLLLRVHP
YQQNEEGPKPRTKEEQKLHHILLQAMRPVPSERQLNFKALLNIFKEMKNH
QIDNHTPIMKKVTSIFSKK
>VFA0374 ATP-dependent RNA helicase
MVCYNQRQLLSIHRFIMSFASLGLTKQILTTVAELGFKEATPIQEQAIPL
VLQGHDVLAGAQTGTGKTAAFGLPLIQRLIESPIERHEESKVVRSLILTP
TRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLLGGADILIATP
GRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPDERQT
LFFSATFSKKVREIAYYMLNKPKEVQVTPTNSTAETVEQMVYPVDKHRKS
ELLAYLIGSRNWQQVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGA
RLRALEEFKTGKVRALIATDVAARGLDIEQLECVINYELPFKAEDYVHRI
GRTGRAGHTGKAISLMSMDEEYLLKAIETLLDTRLPQEWLQGYEPDPNAP
LREDRPRQSRGRSSDKRKMKAKLKIHANRGKNKR
>VF0925 ribonuclease T
MMTEVEQHNLLKNRFRGYFPVVIDVETAGFNAKTDALLEICAVTLAMDEQ
GNLKPATTIHFHVTPFEGANIEKEALEFNGIRDPFSPLRGAVTEDVALKE
IFKLVRKEQKQHDCQRAIMVAHNAHFDHSFVMEAAARTKLKRIPFHPFCT
FDTAAISGLALGQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFCRIV
NKWKDLGGWPVMPEPENDTNNN
>VF1989 recombination associated protein RdgC
MMWFKNCLIYRFTKEIDLNPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMG
RHGDMLTHVASNNILICAKKEEKMLPASVIKESMNAKIDALEAEQGRPLK
KKEKDAIKDDIVVDLLPRAFSKHQQTYALILPESGFIIVDAGSYKKAEDV
LALLRKSIGSLPVVPLTSTQPIENALTEWVKTGTCPQGFEMGEEAELKAI
LEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQERLEFILADDLSL
KRLKFSDEIKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGI
EEKE
>VF1583 exodeoxyribonuclease III
MKVISFNINGLRARLHQLQAIIDKHNPDVIGLQEIKVHNEMFPVEAVEAM
GYKVYFHGQKAHYGVAMLCKQEPISVQYGFDTDTEEHQKRMIMTTHQRED
GSKVTIMNGYFPQGDNIKHETKFPYKRQFYKDLMTHLHTHHTNDEEIIVM
GDINISPIDADIGIGEPNAKRWLKTGKCSFQPEEREWLQTLKDWGFEDTF
RNLHPEVTDQFSWFDYRSKGFVDNRGLRIDVIMATPTLAVKCTESGIDYE
LRGIEKPSDHAPIWSTFK
>VFA0127 hypothetical protein
MLAKKMDAPLDMQNGARFKTKKHGYVTVIEYYNTHTVIVAFENTGNIRAI
SAAKLRSGQLADRSVPPESIMVGEKVESVKHGILTIVQVESENIVLLTTE
SGEEVRMLLPAVQKMKSKAEEPITTKEEPELPTSLSALTKRNKKTKDVNN
LLKKMLTDYGK
>VF1009 ATP-dependent helicase, DinG family
MLNKSVTDSIRQSYKTLQDQLPGFIPRRAQNYLVAEIAKSLAGEYSDSNR
MIVAEAGTGIGKSLAYLLSAIPYAKLNNKKVVISTATVALQEQLAHKDLP
FYRRISPLPFSFIIAKGRQRYCCSHKLSLLTESNNEDDKQVALFTEKPKK
KELDLLKRMYKALAEGKWDGDIDSWPTTIPSSIWQSIVSDKYSCHNGLPM
HRECPFQKAREHLDKADVVIANHSLVMADIDLGGGVVLSEPEQTIYIFDE
AHHLPNVAREHSSAAASLKGSASWLESLNKSVSKFCNLADQKRVNRFQNS
LHEHIQELIPTLNQLSKQFDPTLFNDDGVYRFEHGEIPNWLAEQSKELKE
VSTKANQALAKISDLISERMKDGELAPRMAEPALAEIGFYLQRLENLAQV
WFLMAKPNSDKGAPLARWLEKSQDRDGDTFINVSPLEVGWQLDQNLWSRA
AGAVVVSATMRALNSYSFFCKQAGISEKPEDGVRFLSLASPFNYQENAQL
VIPKLPMEPSAAGFTDLLIEELPFYLAEQSSSLVLFSSYWQMNKVAEGIE
KIVKKHGWNLLIQGQESRQEILKKHKKLCEENKISILFGTGSFSEGLDLP
GNLLTNLIITKIPFGVPTSPVEEAHSEYIESRGGNPFMQISVPEASKKLI
QSVGRLLRKEEDSGRVVLLDRRVITKRYGKALLDALPPFKRLIE
>VFA0543 hypothetical protein
MIQSNSAHEPIEIIVDEHELAETYKLLAQKHKSSSNDSYLHMSKTLNTLE
AFEKANNTGDCEYQMARVVLQSNKRGSVVVELETHVLVEQGWTEHLSIDI
ENTVDVGITKADLAAFKQGNFSVEISKPQAISNLTVEDLLSLMDKYMIGR
PSTYAELFAILQKRVIC
>VF2454 hypothetical protein
MVKRKQHSPRTSGTNGRSGSIRIISGRWRGRKLPVHDAEGLRPTTDRVKE
TVFNWLAPDIPRARCLDLFSGSGGLGFEAASRGAEHVVMLELNKQAHAQL
KQNAESLKADNIEIHHTDALTFLNQAATPFDVVFIDPPFRKDLLEETLTK
LENNGWLAANAMIYIEAEKELNSLPVPAHWHLSKDKTAGQVTFKLYEREE
>VF2041 DNA integration/recombination/invertion protein
MSIRKQPNGKYLVEIYLPNKKRIRKTFATQSEAKRFEQFTQTESIQKPWM
PAKDDNRTLNELIELWYGLHGQALSDGPKRKNKLLAMSLMMKNPIAREIT
ASDFSKYRQLRIETVSIKTANNDQTYLNALFNELKRLGEWNYNNPLAELR
ALKYKQPEMGFLTSEEITLVFDELEKCRNFDAYLISKICISTGCRWGEAE
SLTSTQLTPHRITFTHTKGNKHRTVPISKELYEELPKKNGRLFSNCIKSF
KMAVNRTGVQLPKGQSTHVLRHTFASHFMMNGGNILVLQQILGHASITDT
MKYAHFSPAHLEDAIKLNPLAKNGG
>VF2539 DNA topoisomerase I
MSGKIDKELFQAHEHALEHEICPQCSGELSIRYGKRGPFLGCQNYPECDY
IRPLKSNDGHVVKELGIPCPQCESELVLRQGRYGMFVGCSAYPSCTHIES
LEQKKESSQTETVCPSCHKGHLQEKQSRFGKSFYACDAYPACRFAVNLEP
QQGCCQKCGFELLLKKETAAGTRLICADKKCAEVQSQSE
>VF1713 ATP-dependent helicase, DinG family
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHDAIKNGTQLVVEAGTGT
GKTFAYLAPALVSGKKTIISTGSKNLQEQLFHRDLPLMVSSLGFYGQVAL
LKGRSNYLCPERLNRQLIESHTPQADPELLTQLVKVRTWSSETKTGDLGD
CEAIAEDSPIIPSITSTNDNCLGKECPSFEECFVVKARKKALDADVVVVN
HHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQYFGQSLSSRQL
TELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIILGDTSFRGNWRE
AIKSQAVQREILRINDAFELAYDVLKLALGRSQLLDAAFERCTLLKNRLE
RVCDTTISGYSYWYECTPRHFSLHITPLSVADKFKEQVAEKEGAWIFTSA
TLAVNDDFSHFTQRLGLEPTKQFSLPSPFDYQSQALLCVPRFLPEPNSYG
VAPKLVELLEPVIKQNQGRCFFLCTSHQMMRDLAELFRQTLDLPVLVQGE
TTKQKLLTEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDD
PLLKARIEDCQLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLVIC
DNRLVTRPYGSTFLQSLPPIPRTRDLKKVSEFLAQTNQTEVEQVEQKAIL
EN
>VF2227 topoisomerase IV subunit A
MSTEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRI
IYAMSELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSY
RYPLVDGQGNWGAPDDPKSFAAMRYTESKLSKFADVLLGEIGQGTVDWQP
NFDGTMKEPTILPSRLPHILLNGITGIAVGMATDIPPHNVREVANATVHL
LENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGRGSIKMRAVW
HKEEGDIVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDHENPT
RIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVS
ILSEWIEFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRT
EDDPKHELMTRFDLSEKQAEAILEIKLRQLAKLEEIKIRGEQDELAKERD
YLEKLLGSERRLNTLIKKEILADAEKFGDDRRSPLVERAEAKAMTERDLI
PSEAITVVLSDKGWIRHAKGHDVDPTTLNYKSGDKYLAHARGKSNAPAVF
MGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHVVMGEEEQTWL
ISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL
AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQ
GATITLYAGKRKLGLKPTDLDNFRGERGRRGSLLPRGLQRVTRIDINGES
TTTEEESE
>VF1495 hypothetical cytosolic protein
MWKSLLTLVEDDSVVVLRFPDKFQPDEEPTLKSFKDCLEEINACNFYFDE
KIITTIIQDVKNGMMAHHQNRTVAARRDAEVIIAIEERDMKATMAVIGAY
GGRDLVSSDVISGLTSMEITRGISKNALKKIMFLSRNLPAGEKVSLVIAK
GKEPIDGTNASFVPLVEDFREQALKPQEKEGEEDKVDMRDLGETITVVEG
DELIRRIPPTKGVDGFTVRGEVIPATAGKNTKLRAGKGAMISPDDPDLVI
AATSGMPWINKDGADVDNALCLNAVDISTGHIKFKGSVIVSGDIAPDMIV
RATGSVTVGGFIESADVQAHGDVIAMKGIIGHQVEAGEDYTCFVKAGGKI
TAKFVQSADLQASGDIELGIHAIQSFIKSKNSVTVMDKSGRNGSIVGGEV
YAGSNITTVNLGATAGTETLVKAFTRFDKYKENIVALNAKYKEAQENTMK
VVRAEMDLAKIPKAERTPEQVERVQNMKEESNREIAASMHRFQSAEEELR
KQLTENVVKVTERVYPKVTIQYSDEQVTTKREHSPCKIYFNEYEIKIDPI
VSKNTSLTDN
>VF1622 helicase IV
MQIKATPFAQWLVQGDFYQLELEQEQLLFTSHKYQVSVPFDKWSGKVTFE
RGLIWGALCFYNRNEQVAWRVSGLPWEECDAIINAVLNAYADWKESKVLL
LNQLQPQMIELIENFSANKRFLKQTEALMMVEKLYDLFEQTKISIPLAEQ
LQPDCIAPVIDWLTEPEEQLKVLNDNWLEEQKVEWKTFFSECESQPLNES
QQSALLLNEDHTLVLAGAGSGKTSVLVARVNYLIQSGQAQADEILLLAFG
RQAAQEMSGRIIDKLGFEIGQRVKVATFHQLGLDIIRHVEYQQPKLSCLV
TDVKARKEWFVHVLDSEWKNATAMNRWKKHLKKWPIAYLRGDVDLREESH
NEKLQEWLYKQICQLNSLQLDKKSIVEKIEFHPDVQRLKSELNIVWPFFK
AYERTLKHEDAIDYESMITKAKAYIADNKYELPWSFVMVDEYQDISPQRL
DLIEAICHTENKHQTKATLFAVGDDWQAIYRFAGADVSLTTGFEHRFQST
QIAHLSTTYRFNDQIGAVANRFVQENPMQLKKELNSFTKKKRKAVKVIEH
QSIEKELLSLSKNIRDGEKVVILGRNHNHKPDSFDEWVKFYPGLNLEYNT
CHASKGTEADYVFIVEMTDGQFPMKERAESLDTALLPHAESFPYAEERRL
FYVALTRAKKKVWIVYHGKPSPFVQEIVDKDYPVIIE
>VF1167 exonuclease SbcD
MRILHTSDWHLGQNFFTKSRRNEHQKFITWLLEQVQENAINAVIIAGDVF
DTGAPPSYAREMYNQFVVEMNKVNCELIVLGGNHDSVSTLNESKQLLAHL
NARVIANTNDDLSTQLLTLPDNDGGVGAILCAVPFIRPRDVVTSVAGSTG
VEKQQALGEAIKQHYHQLYQKALELRKELNVEAPIIATGHLTALGVKQSD
SVRDIYIGTLDGFAADGFPPADYIALGHIHRPQLVAKSEHIRYSGSPIPL
SFDELKSQKQVVMVEFDKQDVTQITPINVPMFQQMKALKGDLENIEKELV
QFKECEETTWLCIEVEVQDYLSDLQQRIQALTQDLNVEVLQLRRARNRSE
QTLAQEKTETLAELTPFDVFTKRIEQETFETEKEQQRAERMTVKFKQILS
EVEHKDTDPQEGDA
>VF2085 DNA repair protein RecO
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGV
LQAFTPLLMKWSGKGSMRTLRQAETISLGIPLTGINLYSAMYINELLVRV
VEQETPYPALFLDYLTALTELAQSTNPEPALRRFELALLSAMGYGVDFLH
CAGSGEMVSPEMTYRYREQQGFMASIRHDPLMSFKGNELIAISERRFTTP
EQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK
>VF2113 uracil-DNA glycosylase
MALTWNSIISAEKKKAYYQSMSEKIDAQRSLGKSIFPKEEHIFTAFDLTP
FHDVKVVILGQDPYHGEGQAHGLSFSVLPGVKIPPSLRNMYKELAEDIPG
FTIPEHGYLKTWAEQGVLLLNTVLTVEEAKAHSHAKFGWETFTDAIIKKI
NDDMEGVIFLLWGAHAQKKGANIDTSRHFILQAPHPSPLSAHRGFFGCKH
FSQTNELLRKQNLSEINWGAVTSS
>VF1461 hypothetical protein
MNTLIHEIGVIDKQGKKHPVNFKVGLNVVTGKSSTGKSALIEIFDYCFGS
GENTIPKGIITTKAAIYYVALAVNGQDMIIARDPVIASKGFFRRVEAFDS
KDIDQDYFNTSYFRPLSEFKKHLRTFFLDIDDVDESLVARFNRKFNQKSP
TPSVRSFSSFILQHQNLIANKHALFYRFDEKEKRDQAIEHTKIFLGLVDQ
KFFHLSQEKERIASEVRRLERQKETNKRTSENYKQKVSPVLRQMYALMGF
KYEPLSLDKILHHPQDAKERLDGIIVPEKINYNSDASAQLYNQLTLTRNQ
KNAELRKLQRQVSSINKHIQEEELFVDNVKQFSSPKHAHISTSVCPFCHT
KKDSLRQSAERLQQAITKISGNLAQARPMKAKFESSLVDVQRHIDVVSKD
LTELNQQIINIEKTNKQIAEQKTLYESIIIQKAKLFAIIDTLNMADDVEL
EKEIKKIGGQLKKINEALKKYDVQKGLERASAKVNEYMIEIGRHFAFEAS
YKPINLHFSFETFDLYHLTTENEKIYLRSMGSGANWLYCHITLFLALHKY
FVELGDKCSIPSILFLDQPTQVYFPDFSRDNSNSFEEQKSKEENQRTNKD
RPIDEDIKAVENLFSQLSIYCNELKRNYGFSPQIIVTDHADNLALSNDEP
FDSLVNNNRWRTRGLIHPVEE
>VFA0151 ATP-dependent RNA helicase
MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTG
KTAGFTLPLLERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNL
PLTSDVVFGGVKVNPQMQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEI
LVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLFSATFSDEIRQLAKGLV
KDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLVFS
KTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVAT
DIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSED
EAKELFAIERLIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKPKA
PRVEHKDGQRSGENRNGNKQGAKQGQKPATKRTPTNNPSGKKEGTDSDKK
KRPFSGKPKTKGTGENRGNGSNFGKSKSTPKSDVKPRRQGPRPARKPKAN
>VF0136 3-deoxy-D-manno-octulosonic acid kinase
MKIIRNKKQTIWYDDSILNDSPEQCCNPNYWQQQNRIIGSAQGRGTTWFI
ALEKMDAALRHYRRGGLFGKLIKDHYLFTSWEATRSHQEFQLLKVLRSAS
VNVPKPIAARATKRTFCYQADLLSEKIPNARDLVAILQEKPLSEEMYQKI
GNEIRKMHAVQVNHTDLNIHNILIDDNDKVWIIDFDKCYQQKGDDWKQSN
WDRLQRSFKKEVNKRQIHWSENEWSHLLSDHHTM
>VF2403 NADH pyrophosphatase
MLNQHTKAYWCVVNDSNIWLKDKALPNGSAIEFNLPFEQAICIGYHNEKP
VMWLNDELVNQELIYTNLRELLEYPQTDFLLFSKAIQYGFMAREFRFCPQ
CGGRTQLNHNQIAMQCNDCRKLHYPRIFPSIIVAVRRDDKVLLAQHQRHK
GGLFTVLAGFVEVGETLEMAVSREVLEETGIKIKNIRYVGSQPWAFPSSL
MMGYMADYESGEIKVDKNELIKAGWYDKNVLPELAPKGTIARALIEATLN
EI
>VF1465 superfamily I DNA and RNA helicases
MYKAACLDESGVDKIIKESVDPMQTTKALELLMPLYQRYAKYLNDNQVID
FNDMIGKALEYVQNRQFHSPWKFLLVDEFQDISEPRARLVKALRDNTVKS
SLFCVGDDWQAIYRFSGADVRLTTEFSNYFGATSETTLDMTFRFNSSIGD
VATRFVTQNPVQLKKDIKSLVQVDRPAVSIVRQGIEDSGISALDKALTAI
SNQVIASKTPSKNKVYLLARYWYQLPDLNLLIRIKHQYSSLDIELQSFHA
SKGKEAEYVVVMGLATGKHGFPSEKQTPPLVDALLPQGDKFEYAEERRLF
YVALTRAKHRVYLLVDMMDASEFVTELIKAKYPVETNEFDVSLIQKEAEK
ITCHQCGSGVLRPKAGQYGKFMSCSLYPRCKHKETPCTKCGSPMAHDATN
SYQVCIDVSCGDKRPLCQNCGSEMKLRQGKYGAFWGCSTYRKNYESNCSY
KKNCEPSSPPKNNHYFF
>VF0501 Sec-independent protein translocase protein TatD
MVFTFIDSHCHFDFDPFKNNEVSYLQMAKDKGVTTLVVPSVNQSNWNHVS
RLAHQFDEIYYALGIHPLFITPSYERELENLGELLDGKNKKCVAIGECGL
DFWYPESDIETQISVFRQHCLLAKQHQLPLIVHSRKSHDMVLKLLREIQP
ERGGVIHGFSGSLQQANQFIDLGFYIGVGGVISYERAKKTKMVISQLPLD
KIILETDAPDMPLFGFQGEKNSPDKVRNVFEYLSLIRKESMQTISETVYK
NTTSLFGI
>VF2253 DNA primase
MALAAYGVDYAVASLGTATTGDHMQLLFRPTSTVVCCYDGDRAGREAAWR
AMEQALPYLNDGRQLKFMFLPDGEDPDTYIRQYGKEAFEQEVANAESLIN
FMFRTLVDQIDTSTREGKAKLTTLAVPLIDKVPGGTLRLYLREQLGKTLG
ILDESQLQQLISKQGAVEPKRIAQPEIKRTAMREVITLLLQNPELAQLVP
DLESVKEIPLPGLSLFLQLLESCRHNPHITTGLLLEHWRGDKNEKLLSRL
AAWELPIDQDNIQDVFMDSLDSVLAQCINQQIESLQTKERTLGLSVEEKR
ELLALMLELKA
>VFB51 hypothetical protein
MNNSIERLREGIQELINTHSNASKIYIIRSLFDLLDDAIKNRVSIDILVN
YLNENHVNISKHYLKNALLRIRREKGITKKKPSQVSLSQNHQVTSDKSLV
TTTTKKSNEPDYQAEFDDINQRYKNAETTEEKFIILGGDPKKLDGHSLRK
QREMCIELKTQFNRKYRPFIK
>VFA1157 ATP-dependent DNA helicase RecQ
METQLLRLSKDSNVRQLPLKTLLVYLELKKIIQAKYSYYADYRFKTLIPV
NDIIAKFQTERQQFVSTIFQCSPKAKTWHTVDFDALWMGFRGERKRVIAA
LDYFNEQGWIELESKQMTEVYQVLNKVESTHVLSQEQHQLFKNKEQSEIN
RIHAMLDFFETKSCLSHALAHYFADFNAPEQCGHCSACRSEAAVLPRSSS
HFIADDENVKAWCQELQNSSKEPLANAVFARFLCGIPTPLTSKIRANKMQ
GFGKFESQPFFEVLELVGKLNG
>VF1685 recombination protein RecR
MRTSGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNRQGGMQLADALSQA
MSEIGHCSECRTFTEEDTCAICLNPKRQASGEMCIVESPADIVAVEATGQ
FSGRYFVLMGHLSPLDGIGPSDIGLDLLDHRLNRGDIKEVILATNPTVEG
EATAHYIAELCQEHQVPASRIAHGVPMGGELELVDGTTLSHSILGRQKLY
>VFA0512 hypothetical protein
MPKDLPELLKKINYASIKPITRCLLEWQLHTMTRPTETAGARWDETDKEK
MLWVIPAERMKKGRVHTVPLTQQTLDLLETIDLSLARVNTFSLLIKAIKI
I
>VF0074 DNA polymerase I
MARIPDNPFILVDGSSYLFRAYHAAPNFTNGDGQPTGAVYGVINMLRSLL
KQFETDRIAVIFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIK
AMGLPLVSIPGVEADDVIGTLASQASKAGIPVLISTGDKDMAQLVDENVT
LINTMTNVIMDPEGVVEKFGIGPELIIDYLALMGDKVDNIPGVPGVGDKT
AKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNKEGAYLSYELA
TIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV
SHETSSNSVSTSSKQDDAEEELIVAAQVDRSKYETILTKEAFSVWLDKLN
NADVAAFDTETDSLDYMVANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLD
RDWVLEQLKPYLEDDNKAKVGQNLKYDASVLARYDIEMKGIKFDTMLESY
VYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQIALEQAAPY
AAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYI
DDMLLSAQSVEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELP
VIKKTPSGAASTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKM
INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPH
GWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIE
EVTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYMNVYFERYPG
VMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAP
MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEV
TTKVRELMEQAAQLDVPLVAEAGFGNNWDEAH
>VF0734 DNA polymerase IV
MSIDHQSSSSKQVTRNQKIIHIDMDCFYAAVEMRDNPSLRNVPLAVGGHE
RQRGVLSTCNYEARKFGIRSAMPTGKALKLCPNLVVVPGRMQVYKEVSHH
IHRIFRRYTDKIEPLSLDEAYLDVSDCSLLHGSATLIAEQIRKDIFNELQ
LTASAGIAPLKFLAKIASDLNKPNGQYVITPDSMMNEIKGLPLEKIPGVG
KVSLERLHQFGLYTCEDIQKSDQRDLLLKFGKMGASLWKRSHGIDEREVV
TERNRKSVGVERTFTHNISSFNECWDVIENRLFPELEKRLLKANGSTFIA
KQGIKIKFADFQQTTIEHVHHNLTLPFFKELLEEVLERQKGREIRLIGLS
VTLKEKEYFQQLQLI
>VF0801 COME operon protein 1
MKRILTLLSTLMLTLTLFSASVVAEVTKSDTHEGIEITVNINQAGAEELK
TLLVGVGESKAQAIIDYRNANGKFVKADDLTKVKGIGDKLVEKNRDRIIL
>VF0864 hypothetical protein
MYTLRPYQQDSVKAVIHYFRKHTTPAVLVLPTGAGKSLVIAELARIAKGR
VLVLAHVKELVEQNHAKYEGYGLEGAIFSAGLGRKETDKQVVFASVQSVV
RNLDEFKDQFSLLVIDECHRVPDNKDTSYRKVIEHLQTQNSGIKVLGLTA
TPYRLGIGWIYQYHTRGQVKTDTPRFFRDCIFELPIQYLLDEGFLTPAKL
LDAPVLSYDFSQLKPASTGKYKESELDLVIEESKRATPQIVQQIVEYAKD
RKGVMIFAATVRHAQEILSLLPPTESELVIGDTKLGDRDAIIQRFKNQET
KFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAEGKTEC
TVLDYAGNCYDLYQPEVGDPKPDSSSEIITIPCPACGFNNNFWGKLDSNG
FLLEHFGRRCQGYFEDDEGTREECGYRFRAKYCNECGADNDIAARVCHEC
DAILVDPDKKLKEALKLKDARILNCIDLTLTAGKNQFNKPQIKVTYFGDD
DSEIHEVWQLATKKQKELFLKSFVRPHLVDRHRPFEETAATKIANNQHRF
RPPSFVIARKQGKFWSIRDKIFEE
>VF2397 DNA-binding protein HU
MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGEQVQLIGFGTF
KVNNRAARTGRNPKTGEEIQIKAAKVPAFVAGKALKESVN
>VFA0401 hypothetical protein
MPTEKLPLAAKGLQLNFCKTLACDNFGDSDEQHYLVQRTNPKRPALVCRK
CGAFPPLINNQEVLNELARQQQVQSHSLPSCNNSECEHFGFDVLTHRELY
HAFGYSGDRQRYRCKSCASTFVDKWSGENQKSLIQQKLLGFLFTGYSVRE
ICRRLHINPKTFYDHINQIASRCRRHMSLFDSRLQHDRTSIQLASNATPL
QPLSNNGVFWYASAEVNSGYVIAQHINYSETDEPGTLLDHDPFQENAQYL
SNTFVNEANSQPAIGSKSIFKRVDHKYQEILARANVEDPLGNYVSLNYPS
KGAIIRPPYTSHAHFLEIQKAFSHCDSIEIYMPQEPMLRSAAMSIFLERI
KENSIDLLYVTQDIAFPTEESGDKIDIHLVGWWRDRWAFTEINGQHKGIC
HLNGAEHNEAYWLKRASATVANEYQTRFYNQFTNLVNEPRRKLRPASLLP
LLDIFRAWHNLCHQDKLGITPAQKLGLISKPITLAELLS
>VF0929 endonuclease III
MNNVKRLEILERLRSENPNPQTELEWSTPFELLIAVLLSAQATDVSVNKA
TRKLYPVANTPQSILDLGVDGLKTYIKTIGLFNTKAENVIKTCRMLIDLH
DGEIPEDQDALEALPGVGHKTANVVLNTAFGWPTIAVDTHIYRVSNRTKF
AMGKTVNDVEKKLLKVVPKEFKLDVHHWLILHGRYTCIARKPRCGSCMIE
DLCEFKEKTED
>VFA0581 RstA
MTKKTVNLDEIKEIDTNLSPYVFCDWLSFTFPYVDLRHLHKADLSDMRFA
PVPVHPSRKNGRKLKFRKMPKPNYKLVKNDEEKKRKLEDIYKQQFNVMLH
DRLEVFCLIVLGLRLGNWREKGLNGYENSAGLYVPNTTKRVGFVALGGNN
GTCFFQIEGAGCKHVFNHTDGFRLHWWLTIVGVTRLSRIDLAIDDFHEMF
GREYAKKAYCDDAFRTSAFGRAPNGGERVVVSPNGEIVNESFEVGNRQST
VYWRIYNKAAQLGLDFFWFRSEVELKKVSIDVLLNISGYFAGSCAYSASI
ISSTPVKIVSNKKKACLDIHSQIRWARRQVGKTLFDIANHFNGDLEKTFG
ILANGNPDGDSIQLNDKFVLPNVYKKLMIEILEK
>VF1178 CoA pyrophosphatase
MDTHLLSHLLLHKPINYSSSLLSHPLLKNGHFKSAAVLVPIVKRETGYHL
ILTQRAPHLRHHPSQISFPGGKVEPDDLSLIHTAIRETNEEIGINPAHIK
PLVKLNTIPTISGYKVTPIVALIDENYTTAIDYGEVSSTFEAPINHLINP
KNTYNHHVFNKKHTYNLIFIPFDKKLIWGVTAEIIHAMNYITA
>VFA0753 deoxyribodipyrimidine photolyase
MDYKHNLQCVWFRHDLRTIDNPALQAAVDNQQPTFALFIYSESQWKKHNK
APIQIDLIKRRLVELKNELEQLNIPLIVISSPLFSEIPAKITALFNELSV
NALFANKEYEHDERLRDTQVYESLLNTNCYFFDAKCILPVGTIINRTQQP
YKVFTPFKKAWKASFYQQQPHITKTGKSVLCDPKLIKKLSLNNDDSFVFS
SSNESGSWPVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSPYLA
IGAISAKQCALRLHLEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSK
NQAFLSYDKYIEWDNNLDHFERWCKGETGFPIVDAAMKQLNTTGWMHNRL
RMITASFLVKDLHIDWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCDSS
PYFRIFNPITQGKKFDADCTFIKHWLPELKALSNKEIHHPNPAPLLKSDN
YPDQIVDHAQQRIKVIEVYKQAKQLDIAS
>VF2252 hypothetical protein
MAGHIPRSFIDELLNRHDIVDIIDARVKLKKQGKNYGACCPFHNEKSPSF
SVSQEKQFYHCFGCGVHGNAIDFLMEFDRLEFVEAIEELASMLGLDVPRE
QRSGFNAPSSGPTANSEQKRSLYDLMGGISQFYRSQLKSAANIHAINYLK
DRGLSGEIVQKFGIGYIADEWELVKNNFGRDKASQDALVSGGMLIESDNG
RRYDRFRGRVMFPIRDRRGRVIGFGGRVIGEGTPKY
>VF2391 DNA-binding protein Fis
MLHCNSLNLKAISTTLHHNKRRAKQNMFDQSMTSEALTVTTVTAQDQITQ
KPLRDSVKASLKNYLGQLNGQEVNDLYELVLAEVEQPLLDMIMQHTRGNQ
TKAANMMGINRGTLRKKLKKYGMN
>VF1947 DNA polymerase III alpha subunit
MSEPKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGL
VKYYFAAHGAGVKPIIGADFKVQSQEFGNELFNLTVLAKNNEGYKNLTLL
ISEAYQRGHVQHTPVMDKEWLVNHKEGLILLSGGKSGDVGKALLKGNKEL
VNECVEFYQMHFPEHYYLELTRTGRADEESYLHFAVELAEKENLPVVATN
DVRFIKADDFDAHEIRVAIHDGFTLEDPRRPKLYSDQQYLRSEEEMCELF
SDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGMKIEDFLVKKSQEGL
ERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQW
SKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMP
DFDIDFCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
HPYGFVDRISKLVPSDPGMTLAKAFEAEPQLPELYNADEEVKALIDMCRI
LEGCTRNAGKHAGGVVISPTTITDFAPLYCDADGHFPVTQFDKNDVETAG
LVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVRIESISLEDQASFNLL
QNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDN
FIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGY
TLGGADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEK
FAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGL
VDECFRMKLTVLPPDVNSGLYRFNVDEKGAIVYGIGAIKGVGEGPIENII
EARNKGGHFRDLFDFCARIDTKKTNKRVVEKLIRAGALDRLGPHRAALMA
SLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKWPEKVWL
EGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVI
AARVMTTKRGTRIGLMTLDDRSGRMEVMLFSDALDRYADLLETDKIVLVS
GQVSFDDFNGGLKMSAREVMSLGDAREKYARGLSVSVTESQINNQFFERF
SQILEPNRAGTVPVNVYYQRADARVKLVLGTEWRVTPTDQLMDDLKSLLG
EQQVELEFN
>VFA0016 DNA polymerase III epsilon subunit (3'-5' exonuclease)
MSLINSKEAAPAHTVVVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDRF
QGLMNPGFRVSPFIENYTGISNRMLADAASCDEVMNEFANFIQGCNLVAH
NASFDKRFLDGELALIQREYDGDFACSLLVSRRLTQEASSHKLGDLVAYH
QIENDGVFHRALADAEVTASLWLVLLETLEREHGIVNPSFELMMKIGKTP
KASIANFLKKNR
>VFA0154 ATP-dependent RNA helicase DbpA
MSQTSFSSLDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKT
GSGKTAAFGLGLLANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIH
NIKVLTLCGGVPFGPQIGSLEHGAHIIVGTPGRVEEHLRKGYLNLDNLNT
FVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLFSATFPPQIKSIADRIM
NDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQPESTVIFC
NTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVAT
DVAARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEK
EMHNIAQIEEYMNIDIRDEALPSTDYLKEPAYYAEMVTLWIDGGKKNKLR
PGDILGALTGKDGIEGKMVGKINVFDFHAYVAVHNTVAKAALKKLESGKM
KGRSFRVSRMRG
>VF2463 bis(5'-adenosyl)-triphosphatase
MKPSGRHAVMMVPVTEQGDLLLVREYAVGTESYELGFPKGLIDLGETPLE
AANRELKEEIGFGAKTLTPLKEIVLAPSYFSSKMTLILAQDLYPERLEGD
EPEPLDVVRWPLAQASELLHHLDFSEARCITALLLAQQFLAKE
>VF2514 DNA polymerase III, epsilon chain
MIPHAPQEILNWPSFFKHKQEISKDKRLKNFYKTGTYEEETPLSDIEFVA
LDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVV
IHGITHSDLQGAPDLRRILEQVLDALAGKVVVVHYRRIERDFFDANLRSL
IGEGIVFPVVDTMQIEGDYQQEQAKGFINWLKGKRPESIRLANTRLRYGL
PSYPPHHALTDAIATAELFQAQVRYHFSPHDPIRKLWL
>VF1575 O6-methylguanine-DNA methyltransferase
MNEFTQSIYMNLAQIPKGRIISYGQLAKLAGYPNHSRHVGKTLAKLPKDT
TLPWHRVVNSQGRISLSGDSFYKQKERLEKEGIAICENGKIMNFKQVIMQ
>VF0448 integrase/recombinase (XerD/RipX family)
MNNDMALMERFLDTMWMERGLSENTLASYRNDLVKLLQWLEDNHYKCASI
SAMGLNEFQAYLVDKEYKQTSRARMLSALRRFFQYLHREKIRGDDPTALL
ASPKLPQRLPKDLSEEQVDALLNAPNVEDPLELRDRAMLELLYATGLRVT
ELVSLTMENVSLRQGVVRVTGKGDKERLVPMGENAVDWIEQFLTHGRPML
LGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVIAGIDSDKLSPHVLRHAF
ATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHPRS
>VF0455 DNA mismatch repair protein MutH
MSLPPPNTIDELLQRAESIAGYTLSELAEQAGIPVPENLKRDKGWVGQLL
EWHLGASAGSKPLPDFIDLSVELKTIPISYTGKPLETTFVCVAPLTGVHS
LQWEESHVRHKLAHVLWIPVEGEREIPVGDRHVGYPVLWQPSLEEERQLK
QDWEELMDLIVLGKVESITAKHGEVLQLRPKAANSQALTEAYGENGQPIK
TLPRGFYLKTQFTHSILTSFFN
>VF1450 ATP-dependent DNA ligase
MMKIKLLAALVALGLTPLPTYSHDEPNTASIDVVLATQYEKGMDIEGYWA
SEKLDGIRALWTGEKLITRTGHTIYAPDWFTGPLPDHKIDGELWAGRGGF
QQVAKTVLDSQPNDELWKKIRFMAFDLPSSAGMFPKRYYELSTIVKKLDH
PHLKLVEHYPISNEDSLLEALDDISARNGEGVMLRKVSEVYRPGRSDDLI
KVKKHQDNEAIVIGYTDGKGKFRGMVGAMILRMPNGKEFKVGSGLSIEVR
ENPPKLGSTVTYRYNGYTDNGIPRFARYVAVRNNY
>VF0012 DNA gyrase subunit B
MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDE
ALAGHCKDIIVTIHEDNSVSVSDDGRGIPTAIHPEEGVSAAEVIMTVLHA
GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEP
EAPLAVIGKTDTTGTKIRFWPSEETFTNVVFVYEILAKRLRELSFLNSGV
SIKLQDMREEDKADHFMYEGGIQAFVQHLNRNKTPIHQKVFHFDSEREDG
ISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNTFMDK
EGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV
ESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALD
IAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK
ILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA
DVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDE
DAMAEYQIALALDNASLFTNADAPAIAGQALEDLVVQYNSVMKLIDRMSR
RYPVSVLNRLVYTGRLTQEMCADEASAQAWTEAFVAELNATEVGASQYNA
ALLFDEEANAYQPKLVVRTHGVEHEYVLSIDLLNSKEYARIADLAEALDG
LLEESAYAQRGERKQPVSSFEDALAWLTKESRRGFSLQRYKGLGEMNPEQ
LWETTMDPESRRMMQVTINDAVAADELFTTLMGDQVEPRRNFIEENALRV
SNLDI
>VF1687 DNA polymerase III subunit gamma/tau
MSYQVLARKWRPHHFKDVVGQPHVLTALENALDHNRLHHAYLFSGTRGVG
KTTIARLFAKGLNCEEGITSTPCGVCSTCKEIDEGRFVDLLEIDAASRTK
VEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYV
KFLLATTDPQKLPVTILSRCLQFHLKHISVDQIHEQLDFVLDKEEVSKEA
RALGLIAHAADGSMRDALSLTDQAIALGNGSVTAEIVSAMLGTLDTDQAI
RILEAISTKNMQTLMNCVNDLADIGVEWDGLAKELANQLHKLAMYQALPA
TLDKTQPDAERIELLSTQLSPQEVQLFYQIVLQSRKDLPLAPNERTGAEM
MLLRMVAFRPVHAQALEAQPIAVPSTEPQTTNAAPRVQQAPSAPVNVAPQ
AQRPMASQQRPTTPQQTQQGYAPANVPPMQTEQPPVYDAPPMGTPSGESA
SQAPQHSSSAQSPMQETPAPRSGLLGVRNQLRSAKNNLTNTGTGSKKASA
ASDKKKTSSVLERIAEKQHLAPRAQVSQIGNSATQEKKPEEPYRWKSTQP
EMKKVVSDVTPTKLKQALEHEKTPEMVKLLVEESSKQDTWSALAMSLTLP
KLVQQLVLNSAFVEQDNQVKLHLRAAQSHLNGDKANELITQALTQTLNRE
VTVTIDISDEGTTPLELREQMYQTKLQTAYQSLQQDPHVNFFIQRFGAEM
DQESVRPI
>VF0635 conserved hypothetical protein
MQENQCPKCQSELRWQKEGYHCDFCQIDFKKVAYCPDCNKEMEKLNACGA
ASYFCHDCNELKSKSRAKTEFSEIAIS
>VF0535 RecA protein
MDDNKKKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIAL
GAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDP
VYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVIDSVAALTP
KAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV
MFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKI
AAPFKQAETQIMYGQGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQG
KANASKFMRENTEVAAELDKKLREMLLTPAEEKPETDAAPEIEENEEF
>VF2521 ATP-dependent DNA helicase rep
MKLNPQQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNI
AAVTFTNKAAREMKERVGQTLGKQESRGLMVSTFHSLGLDIIRREYKVLG
LKAGFSLFDDQDQLALLKELTEKQIDGDKDLLRQLLSSISNWKNDMLTPA
QVKGVARSEQDQLFAFCYEMYLNQMKAYNALDFDDLISLPVLLLRTNQEV
RERWQMKIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSW
RGAKPQNLVLLNEDYPNLRVIKLEQNYRSTSRILRAANILIANNPHAFEK
RLFSEIPDGEQIKILTAKDDEHEAERVVGELIAHRFLNRTDYKDYAVLYR
GNHQSRLIEKSLMQNRVPYKISGGTSFFARAEIKDIMAYLRLLTNPDDDN
AFLRVVNTPRREIGPVTLEKLGSYANMRGKSLFESSFEIGLEQTLSGRGL
ESLRRFCHWIVSISENAERGNTVEAVRSLVKDIHYEDWLYETSTSAKAAE
MRMKNVSDLYSWIVADLEGDNYDNEEKTLKEVVQKLTLRDMMERGEDEDG
ADQVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEDNVEEERRLAYV
GITRAQKELTFTLCKERRQYGELIRPEPSRFLEELPHDDLDWEMKKPKPT
QEERMERGKANIANLRAMLKK
>VF0751 DNA polymerase III, delta subunit
MRVFPEQLAQNLERGLRQCYLLFGNEPLLKQESLDAIRQAAFTQGFEEKH
QFTLDKQLDWNNVFDCTQALSLFSSRQIIELTIPDTGMTTAHTSKLKELV
PTLHDDIILLLQGPRVNKAQENTQWFKALTQLGLFIPCNTPDNQQLPRFI
QQRCKKLKLKPDAEAIQMLAQWHEGNLLALAQSLDKLALLYPDGLLTLIR
IEEALNRNNHFTPFQLVDTLLSGQAKRAQRILRQLESEGTEVIILLRTLQ
KELLLLQTFQYSLSQGEAMFTVFDRYKVWQNRRALYQAALQRLSITQIKQ
LIRLLAQIEIATKTDYDSDCWPQLSQLTLDMCNIHISVTSNVSH
>VF0301 replicative DNA helicase
MADNRKQNRKPDAQVDALKVPPHSLEAEQSVLGGLLLDNERWDTVAEKVV
ASDFYSRPHRLIFESLKAILEDSLPLDLITLSEHLERHENLDSVGGFAYL
ADLAKNTPSAANINAYADIVRERAMVRNLIGVANEIADAGYDPQGRTSED
LLDMAESKVFAIAEERTTENEGPQNVDSILEKTLERIEILYQTPQDGVTG
VSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPV
LIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILTQ
KKNMYIDDSSGLTPTELRSRARRVARESGGLSMIMVDYLQLMRVPGLQDN
RTLEISEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPINSDLRESG
AIEQDADLIMFIYRDEVYNPESNRKGIAEIIIGKQRNGPIGSVSLTFQGQ
FSRFDNYAGPAFDDE
>VF1514 Exonuclease KapD
MNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYV
KPEKDEISLFCVDLTGISPRKIEKQGRPLADVLKSMVKNFGGTNKIYAAW
GHDEQILEAECKAKGIEVPFNEFLNLATIYRIRSRKKNERMGQRRAMEEL
NIEWEGRQHSGYVDAYNLAQLALKIL
>VF1051 DNA topoisomerase I
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPMGSTSTGKKAAA
STKGLSVEEKARIKKERDKKNLINKMGIDPYNDWAANYQILPGKEKVVAE
LQKLAESADTVYLATDLDREGEAIAWHLREIIGGDDSRFKRVVFNEITKN
AIQQAFETPGELSMPGVNAQQARRFLDRVVGFMASPLLWKKVARGLSAGR
VQSVAVKVLVEREREINAFIPEEFWDIHADTLTADKENFRLQVAQRNGSA
FKPLNQADTEAAVSILQNAEYEVCKREDRPTKSKPSAPFITSTLQQAAST
RLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKEAVEALREFIGSEYGD
SYLPAAPIVYGSKEGAQEAHEAIRPSSVEVKADDLQGMEADAHKLYNLIW
NQFVACQMTPAQYDSTTLSVKADEFTLKAKGRILKFDGWTRVQRPMGKNE
DQLLPAVQLGDKLKLEKLDPKQHFTKPPARFTEAALVKELEKKGIGRPST
YASIISTIQDRGYVRIDNRRFYAEKMGEIVTDRLNQSFDDLMDYDFTARM
EGNLDRIAEGEKDWKDVLNTFFQDFTADIAKAELDESEGGMSPNNIVETD
IKCPTCGRNMGIRTASTGVFLGCSGYALPPKERCKTTINLGSEEGIVNVL
EEDVETAALRAKKRCPKCETAMDPYLIDQERKIHVCGNNPNCEGYVVEKG
EFQLKGYDGPVVECDKCGSDMELKNGRFGKYMDCTSETCKNTRKILKNGE
VAPPKEDPVHLPELVCEKSDAYFVLRDGASGLFLAASTFPKSRETRAPLV
EELVRFKDRLSPKFLYLTEAPTHDPDGKPAVVRFSRKTKENYVRSEVDGK
PTGWTGLYIDGKWAITDKRKKPKAEK
>VF2483 integrase/recombinase (XerC/CodV family)
MSDVLPVQFSKHLDAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLVELGV
ESWQDVDAGWVRQVTSKGMREGLKASSLSTRLSSLRSFFDFLVLRNVLTA
NPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAIMELMYGA
GLRLAELVSIDVRDIQLRQGELRVIGKGDKERKVPFSGQAKEWLGHWLRV
RNQLAKPEEKGLFVSKLGVRISHRNVQKRMAEWGLKQGVNSHISPHKLRH
SFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRA
KKK
>VFB46 DNA topoisomerase III
MRLFIAEKPSLGRAIAASLGVIKNEKGYITCKNGDVVTWCIGHLLELAEP
EAYDKKYKSWSLDTLPIFPKEWILIPTDSSKEQLDVVLEQIKKATVLVNA
GDPDREGDLLINEVIEYANVSNDIKENALRVLINDLNSKAIETALNNLEP
NSKRIPISNAALCRSRADWLLGMNITRACSVLAKRKGHDNVLHVGRVQTP
TIQLVVKRDIEIANFKPVDFFEVEAQFTHADIPFKAKLQNKKRIDKKDLA
ESMITNITGQSATVTLCETKRAKSQPPLPFSLRTLQEAMSSKYGYGAKET
LDIAQSLYETHKITSYPRTDKNYLSTIKEDEIQLIIENLEGLNDTPLAQW
ASDADMSLRSPCWNDKKLEGSAHTAIIPTTRAPDLDALSEAEHNVYTAIA
SRYLAQFYPTAEDDNTTIKIQSGEHEFKTTGKIEIKKGWRTVLGKEKNDT
EEQSLPSLTKDQSIDCTNAEVISKKTSAPKPYTEGTLLSAMCNIGKEVTD
PALKAKLKETAGLGTEATRAGIIEKAKEREYLTLKGKNIVSTPLAKMLVM
ALPNKVRDPAITAIWEQQLDVVERGECSVETFINAIEKTVQSLVDDLKSG
KEPFTLSKSNAPACPQSGCTGFALPFEGKKSKAHQCHVCGTKFKDDNGKV
GKAIKKIKKLDVKK
>VF0950 crossover junction endodeoxyribonuclease RuvC
MSIILGIDPGSRITGYGVIRQNGRHLQYLGSGCIRMSEKELPGRLKQIYA
GVSEIITQFQPDVFAIEQVFMSKNADSALKLGQARGSAIVAAVNADLPVY
EYAARLIKQAVTGTGGADKSQVQHMVMSMLKLPAKPQADAADALGAAICH
ANTNKTLIALAGKATGARRGRYR
>VF2212 endonuclease
MEKKQNKRAKGEFYELMAQRYLEQHQLTFIARNFQSKTGELDLIMRDQDS
FVFVEVKYRNTSNFGSAQEMVTWQKQRKLQRTALFWLMKNKLSVEHTSFR
FDVVAIHAQGKEINWIKNAIVEG
>VF2114 endonuclease IV
MKYIGAHVSAAGGVDQAPKRAYQIGANAFALFTKNQRQWVAKPLTKKIIS
DFKANCKRFGFSSEQILPHDSYLINLGAPETEKLEKSRAAFIDEMERCHQ
LGLTLLNFHPGSHLKKISEDECISLIAESINFAHQAVPDVVAVIENTAGQ
GTNLGWKFEQLAQIIEQVEDKSRVGICIDTCHTFAAGYDLSSKEACEHTF
AEFERIVGSSNLRGMHINDAKSN
>VF0456 bis(5'-nucleosyl)-tetraphosphatase(asymmetrical)
MIDGDGFRPNVGIVICNSHGQVFWAKRYGQHSWQFPQGGIDDGETPEQAM
YRELYEEVGLTKNDVRILASSRHWLRYKLPKRLVRWDSKPVCIGQKQKWF
LLRLECDESKVNMQRDRSPEFDGWRWVSYWYPVRQVVSFKRDVYRRALKE
FAVIAMPFKERKFKRKGKKG
>VFA0501 hypothetical protein
MSEVENTQKEAIDLETISPELKKVIEFENVPEEMWHMLVSVHEVAEIAVR
ESWDAMPASAQKVLDNFEQFHALVSLSQSYAGYDFMAEFENLDLPENMDE
DAQAEYRSQLLDQVLHNCVKDLVKQIKKARRDPIMKRELAEIFKK
>VF0582 exodeoxyribonuclease V beta chain
MTTIAAPNQLNAMTFPLHGTRLIEASAGTGKTFTIASLYLRLLLGHGDEG
TRHQEELTVDRILVVTFTEAATAELRERIRAKIHDARLAFARAVHNNGYK
SGDPVIDPLLASIGDHKSAAQILLNAERSMDEASIFTIHGFCQRMLTQNA
FESGAQFESEFVTDQAKLMHQVAADFWRRSFYHLPKMVAESVYDCWSSPS
ALLGDMGNSLTGVPKHLTVEPLENSLEEFCQQGIARIDELKKQWSEHCAD
FEALIAGSGVDKRSYTKKNLPNWLEQVSSWANNPTTSLQVHDKLEKFSQE
LLIEKTKKGEAPEHAVFKLIDDFLAQSLEIKQPLLSLAIHRCRKTLQQAK
EQKNWLSFDDLLTQLSQATENQDNALLLEKIREQYPVALIDEFQDTDPLQ
YSIFSTLYQDQPQCGLFMIGDPKQAIYAFRGADIFTYIQARRQVVDHYTL
DTNWRSTADMVSSVNRIFEHGKQPFLYDDDIPFYPVKYNPVNAEQKSWAL
DNHTQPAMTFWLQESKDGNPVNKTSYQRVMAESTAAQIQTILTGAQQGSA
YLQNGEKKQAIKAGDIAVLVRTGKEGKLVREALSKQGIASVYLSNRDSVF
SSPLAKDVLRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQW
EQAVNEFRAYRKHWQQRGIMPMLHQIITQQGISERLLAENGGERQLTDLL
HIGELLQQTSQTLDSDYGLLRWLSDSISEPNGDSEEQTVRLESERNLVQI
VTIHKSKGLEYDLVFLPFVCLYRAVDKKGEVSFYDEDNRYSVLDLLKEDD
SVEKAEKERLAEDLRLIYVALTRAVYACYIGMAPITKGISKKPPTGVHLS
GLGYLIQQADECNVEELQACLEKLIVGNSPMVIQSPQTIIDELYQEVQDE
HIELYANKLIEPVKSNWWMTSYSGLVKQGNHHNDTSLELINLDIDSAEDK
DDKELDLEPERTIFTFPRGARAGTFLHSLFEEVEFTQPITSEENTQIIIK
LLEKENYDAEWLEVVQTMMQRVLDCPLDGENLRLASKGPTQRLVEMEFLL
PIELLNSSLVNKTIAKHDEVSARAGELGFSTVSGMLKGFIDLVFEHEGKY
YVLDWKSNHLGDSPECYGGESLVEAMRDHRYDFQYQLYALALHRFLKSRI
ADYDYDTHFGGAYYIFLRGVEETHEGHNANSNGVFYSKPSKALLEELEKL
VDGETVDA
>VF2192 mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase)
MKRLHIVAAIILNAEKSQVFITKRPDKVHKGGFWEFPGGKVEAGESAEQA
LIRELNEEIGINSTELDIFESLSHDYPDKSLYFDFFTVTQFDNQPYGKEG
QEGLWVSISSLKEYEFPEANVPVLNKVVEQFSS
>VFA1102 hypothetical protein
MAYVEPIKNKEHLKYAAKYLQKNHDPAFSLIWNIGLETGLRISDILRLKY
SDIDFRSGHCEVIESKGTLARKARAKHRVLKQVKEELILHYQHNVKKLTA
TYITPFYQIEKLLPKEWILMVNERVSAAKKATPPVTRSFLFSKKMVFMLK
QRKEKFRHINSDSVFSRKTLLSNRAKGVDGLLTRQACWTVFSKLTQVLEK
IGSTAKVGCHTLRKSFARHLYFATGKDISLVMTTIGHKSESVSLRYIGVS
DDDIKLAQKTLITYLSS
>VFA0408 phosphohydrolase (MutT/nudix family protein)
MRILNITTHPDLERLDNHKILHRNATRGIILKGEEILLLYTERYQDYSLP
GGGLDEGEDVIAGLVREIEEETGAKNISNIEPFGMYEEFRPWYKHECNVL
HMISYCYTCECDRELGETNYESYEIRNGMKPVWINIHEAIAHNEDIISNS
DKKGMSIERETFLLHLIAKECLNAE
>VFA0542 superfamily I DNA helicases and helicase subunits
MKKALALHYNLLQGHPFGQLSKPLLSNQDTLIEAHGDIKPNAFGALSKLS
CLYPYKGFETYNKDLLKTLNDVKVSKSKESDSAGDDNQSLDKKLPTFSGD
RYVLAIDVNPAYGRKTITVMIIPVRIKNLSGNYNRFVFYPDTSSFPIINP
ELLEVEGNVPPHCIGKMENFDKFDYSVFKEPTEDLHELFTVSEAMFDKIC
DTTLGSMEHHESLGLDNPDVTVTLRRVMADNSANQHIINLYRDLFTVSDD
SLTGTSVCKTDSAYKDNGNVKNLNDDYLISLLQSREKPFLAHMDECTGTD
TGDYRHRELFALDNTQRGAASVATLMREGDVLAVNGPPGSGKTAMLKAII
SHQYVEAALAKGDCPIVIGVGGTNQSVTNIVNAFPNVLYQGDSKTLLHMR
RWIDGPANYGTYFPSTSIKNNMSPELLKSAVLGEVDKSNKGGVVRWSGEL
ANLNNPSKLDQLIGQFTNYCGQHYTTTFSDLESCVAQLHHTLTAYSKAIN
TLYYQLVEEFDKGFETHPSIHTSFSKFFDEKHSNSQGAAQIKTMYDLLHG
DDSKKIQIISDVCREYLRDNDLEGNNPAILANFGVLSGMAKVILADRAVD
LLVRSELFHYAARYWEGRYLLSCSEHFLIYASPSNLETALRRMCMITPIL
VSTVQSAPKIFAYQKPSGISEQPYLYGKADLLIIDEAGQADIRSTLPLLA
LAKKTIAVGDIAQIPPVIQDVTPIQEQGLFQTLGMGVNEAHTKRCFVHAF
KNQLLPSISGSILHVLRQISCVNHQGQGMSLRGHYRCQEVLSQFCNELVY
DNSIFIIPPLFKERGPFRPLTWVSSASETQKVGTSHKNEKEARTIVEWLI
DQWPRIHDHYNKPSKPKKRLPDLVGIISPYKKQSLVFIGHDEDDSGSKGK
TQGMLHSLLIKKFKGTEYEITVDDVDKMKIGTVNALQGAEKPIILFSGTK
SIKFGGDVHYRAAAYILNVAVSRAKECFVAFICEKTFGIPTVTEGLIPPT
DPKSDSVGYLGYYIGKRGERLFPRSVVIIESDNKIKKLEALLGKRYIVVS
TKGKVLGLPFSDEEALLVKNGLHPKYQYNVKKNPKKKSNDKGNAARKAVS
DILQLCGGADIDEIILATDDDNVGEHIAWHLQELFRQHQPDSLKKLQRVR
LRGLSPKAVKEAFDVDNRDSLDIARASAEMVRESLDLILGRKLSAIAQKC
PLVGQGESVRLALEKRLIQEVDEPQVKGMGRVKAAILSLAYGHLKEQLAS
ITHPTEAPVTVIVNGKKLRGRLVQQRQKTEGQEVDKSIEYIRNKAPFESE
GSGWTVIESEFEERTVSPPDASTLNVMRQNAIEQQVKPVESYKALTGLYE
GNDL
>VF1936 ribonuclease H
MITEIMKQVEIFTDGSCLGNPGPGGYGIVMRYKGTEKTFSEGFNKTTNNR
MEMLAAVVALRKLKEPCSVILTTDSQYVRQGITQWIHGWKKRDWKKADKK
PVVNADLWKQLDAESERHKIDWRWVKGHAGHRENEMCDELARTAAENPTQ
DDTGYPG
>VF0713 exodeoxyribonuclease VII small subunit
MAVKKPENLSFEAAIEELDSVVNQLESGDLPLEDALKKFERGISLARAGQ
EKLTQAEQRVEILLQADDNAELTPFDGQDD
>VFA0384 ATP-dependent RNA helicase
MSESITEFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKA
QTGTGKTAAFSLPLLNKINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRN
IKGLKVLEIYGGASIVDQMRALSRGAHIIVGTPGRVKDLLNRDRLNLGEV
HTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMPPMVKTIVDR
YLREPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETDASIV
FVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVR
TNQMRMLRTIERVTKSTMEEIQLPHRDQVAECRLAALAAELQADKEFVAL
DAFTDLINKLQETLEIDATTIAAMLLKRQQGKRPLFYKGPDPMIAAMERA
KNRRSDRGERGERGGRGDRPERGERRQYNNDDFDTYQLEVGREQGVQVKD
IVGALANELGFTKGSIGAIKLAPGHTYVQLPKKMSADVAGKLKKLRIRQN
ETKAVVVEGVDLTIERRPRTGGGRDDNRGGNGRGGYRGNRENREGGRGGE
RRFDRNKGGDHRGSHRGERAPGGRGRGRSERSEG
>VF2460 ATP-dependent DNA helicase RecG
MTNTMLSAIPLTSLAGVGAKVAEKLEKIGLVSIQDLLFHLPLRYEDRTRV
YPMARVHSGLFAAVQGKVMSCDMQFGKRKMLLVKISDGNGTITLRFFNFN
AGMKNSFSEGKLVHAYGEIKRGGSGLEIVHPEYQFHVPSQPLEIEASLTP
VYPTTDGLRQNTLRSLTDQALELLDKAAVTELLPQGLYNNQITLNQALHI
IHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSMLSVRSKGQQEDALP
LATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQGDVGS
GKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGW
LAGKLTGKAKEKELERIASGEAKMIVGTHALFQQNVEFHHLALVIIDEQH
RFGVDQRLELREKGQKNGAYPHQLIMTATPIPRTLAMTAYADLETSVIDE
LPPGRTPIQTIAVPDTRRDEIVNKVRSACMNDGRQAYWVCTLIDDSEVLE
AQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIMQEFKEGNLHLLVAT
TVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHS
PLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIAD
LVRDQHLIPEVQRIARHLHDNYPKNAKAIILRWLGERDIYSNA
>VF0353 single-strand DNA binding protein
MASRGVNKVILVGNLGQDPEIRYMPSGGAVANITIATSETWRDKATGEQR
EKTEWHRVALFGKLAEVAGEYLRKGSQVYVEGQLQTRKWQDQNGQDRFTT
EVVVQGFNGVMQMLGGRGQGAPAGGQQQQGNWGQPQQPAQQNNFAPQQQQ
APQQQAPQAAQPQYNEPPMDFDDDIPF
>VF0893 hypothetical protein
MKLAALILPFALLTTSAQAADTQCLSDKYSQYVDASLTWYQELIAITVKK
DPNLQSVGDWFLEGRKHHFELNRAAVNYYLENAPEKVKTNQSIESWLQLS
QKEVKELASHDDELGKIAKATFDDRQSQPHKQNYELRSAFADILSHPKTI
DVPLKAYNQKMSEISIIKCQ
>VFA0571 DNA integration/recombination/invertion protein
MDKKHFLSAQLDIDTLATCLTKQYSNNSLISFKNDWNNFVEFCQLNNVIA
LPASTTAIRIFIEKQAKVKKLASIKRALISISHIHTAFEYKDPTQSIQVK
SALGKIRVDKVNDNKQTEGISSDMLDELRHQLFNSVELKDIRDLAIWYLM
FELLLKRGELRDLQLDDICFNDETNSCLVQIHQNYYAISEETTELLNRWL
QHSNIYDGHLFRAIDRHQNVAVNGLNDSSIYRIFRRANELLNLEINFSGL
SARVGATKELAQRGYSIHEIQEMGRWVSPAMPNQYIGNTERSERQKSVFK
TKKA
>VF0130 formamidopyrimidine-DNA glycosylase
MPELPEVETSRLGITPHLQGQTIKAIVVRTDKLRWPIPQELQKLVGQRVQ
SIRRRAKYLMIDTPKGSAIIHLGMSGSLRVLDEEVPSAKHDHVDLVLENG
KVLRYNDPRKFGAWLYSEVGVAHQVLSKLGPEPLTNEFNSEYFAEKAKNK
KTVVKQFIMNNAVVVGVGNIYASESLFMAQIHPKTSVGSLKASQITLLVA
EIKKVLETAIKQGGTTLKDFNQVDGKPGYFAQELHVYGRAKKKCLLCSSI
IQEEKIGQRNTFWCGHCQPFNK
>VF1500 ATP-dependent helicase HrpA
MMRDRFRLSKRIQGASRIKKEESRHAVFDEIALDIAQSMQTANNRETDRP
TISYPEQLPVSQKKDEIAEAIKNNQVVIVAGETGSGKTTQLPKICLELGR
GKFGNIGHTQPRRLAARSVADRIAEEMETELGSHVGYKVRFNDQVSDRTQ
VKLMTDGILLAEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYLRELLPK
RPDLKVIITSATIDPERFSKHFNNAPMIEVSGRTYPVETRYRPIVEDGDD
TDRDQLEGIFDAVDELCEEGLGDILIFMTGEREIRDTAEALEKRNLRDTE
IVPLYARLSAQEQNRVFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTA
RISRYSYRTKVQRLPIEAISQASANQRKGRCGRVSEGICIRLYSEEDFIS
RPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNRNIQDGIKLL
EELGAINSNAKDPKKSLTKVGRELARLPIDPRLARMVLEAPKYNALQEVM
IIAAALSIQDPRERPSDKKQQSDDKHKRFNHEDSDFLTFVNVWEHVKAKQ
KELSSNQFRKQCRKDFLNYLRVREWQDVHYQLSQVMKELNYKVNQEAAGY
QGVHTAILAGMLSHIGQKDQEKNEYQGARNARFHIFPASGLFKKQPKWVM
VAELVETSKLWGRIVAKIQPEWIEPLAGHLIKRSYSEPHWSKKSAAVMAY
EKVTIYGIPIVPKRQINYGAIDAPVCREIFIRSALVEGDWHTKHQFFKQN
RKLLQEVEELEHKSRRRDILVDDDQLAEFYDQRVGVDVVSGRHFDTWWKK
AQKETPELLNFEKEMLFRGDASHVTDLDYPNFWHQGNLKLKLSYQFEPGQ
DSDGVTVHVPLPILNQVEPYGFDWQIPGLRHELVMALIKSLPKTVRKNFV
PAPNYADAFLSRAVPFEAPLLDSLEKELRRMTGFEVFRDDWKLEQIPDHL
KVTYRVVDHRNRKLKESRDLYELKEGLKDKVQETLSQVADDDIEQKGLKT
WSFGELPTLYKQKRGGFEVKAYPAIVDGKDSVEIKLFETEEEQHNAMKAG
QRRLILLNVPSPIKYLHDNLPNKSKLGLYFNQYGRVMDLIDDCIACGIDK
LIDEQGGLVWQPEAFEKMKEHIRAELGDTVVEIAKQVETILTTAFQIQKK
LKGRVDLSMAFALSDIKAQIENLIFKGFATECGWKRLQDIHRYMKAIERR
MEKLPIDPNRDRMHLLKVEGITSDYKELLNKIPKGQPIPDKVKEIRWMIE
ELRVSYFAQQLGTPYPVSDKRVKNAIADC
>VFA0513 DNA integration/recombination/invertion protein
MGFKGRQTSHGLRALASTILNEQNFDADIIEAALSHVDRDKVRSAYNRTD
YLERRKVLMA
>VFB15 resolvease/recombinase
MYSALLNADIRIYGYLRASTDEQDASRAKNELMLFAEQMGFQVACWFEEN
ESGAQLKRPELFRLLDIAISGDVILVEQVDRISRLNTQDWEKLKLMINKK
GLKVVSLDLPTSYQFMSNTDDFTERMLSALNGMMLDMLAAVARKDYEDRR
RRQAQGVQRAKLEGKYKGRPINTKLHNKIEGLLRENKSYSQIENLLGCSR
HTISKVSKLIKSSIG
>VFA0652 hypothetical protein
MNYVSGEGYEVGETLFSTDIKLSPCSDFKNFTIFRAYCRKFNEIDIKQIK
IDDDDCGFLIPSFSLLSQDHDYSSKGNFQVFSDAIIKWHLSNLDTENLKS
EVPLDSFFNENLGFIAISNRNYSNSKDKERKIFFELINAGIYVDILHKSP
SFYTENPLFPNKNLPSTKRITFKTTSNKAILDEFICDIFNSIIFNETDHF
LQFFYLYQVVETLIEFVMSQEYSKVMTKINDLGGGVSTQQLKKLVETLNE
SVQERKRINKLCNEYTDTYNDSFNIQQSLFDFIKQNLNSDFEVNNDIGSC
IYEIRNKSFHEFRTLRNATKLSSITPHVFDYILHLITSYKH
>VF0907 ATPase, AAA family
MSNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQ
IHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIEKAK
ENQITGRRTIMFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFEL
NNALLSRARVYKLKSLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQ
LADLVSGDARMSLNYLELLHDMAEENAQGKKVVDLPLLAEVAGEKVARFD
NKGDMWYDLISAVHKSIRGSNPDAALYWTARIIAAGGDPLYVARRLLAIA
SEDIGNADPRAMEVAMNAWDCFTRIGPAEGERAIAQAVVYLACAPKSNAV
YTAWKQAQMDAINSPDYEVPNHLRNAPTSLMKDMGYGSDYRYAHDEPNAY
AAGENYFPPEMRDRKYYFPTKRGLETKISEKLEYLAQLDQNSPLKRYQ
>VF0936 excinuclease ABC subunit B
MSSAYELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLA
NVIAHSGRPTIIMAHNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEA
YVPTTDTFIEKDSSVNEHIEQMRLSATKALLERKDAIIIASVSAIYGLGD
PKAYLSMILHLRRGDIINQRDMLRRLAELQYKRNDMAFERGTFRVRGEVL
DIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMPRCTIYPKTHY
VTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNE
LGFCSGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGA
MYKGDRSRKENLVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKY
EIEKSDGEIAEQVVRPTGLLDPVIEVRPVATQVDDLLSEIRIRTKNNERV
LVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTVERVEIIRDLRLGEFDV
LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGK
AILYADKITGSMEKAIGETERRREKQQLHNETLGIVPQALKKDVADILEL
GDMTKNKRKVVAPKIKLSEVAEEGASYSAMSPQQLEKAIQKLESKMYQHA
KDLEFEQAAQVRDEIDNLRKQFIVNS
>VF1482 exodeoxyribonuclease I
MPQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCR
PPVDYLPSPEACLITGITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGY
NNIRFDDEVSRYTLYRNFFEPYGWSWQNGNSRWDLLDVMRAVYALRPEGI
NWPKDEEGRPSFKLENLSVANGIEHANAHDAMADVIATIELAKKVKQAQP
KMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIVPVAWH
PTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLV
HLNKCPVLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELY
SIEPNYEKSTNVDTLLYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDP
RIKPLLFRYRARNFPHTLNEAEQLRWHAHLQDYFQTHLPDYEASFENLYL
ESEGNDKKVAILKAVYNYVQQLIS
>VFA0625 hypothetical protein
MSHYTKLIFTFFLWLGLLTPAFSVEPVNSDFFGKAIKGYDPVAYFTESQA
IKGNKNITYKWNGSKWYFCSQNNLKLFVSNPTIYAPQYGGYCAWAVSEGY
TAKIDPNAWDIFEGKLYLNYSKSVQKTWRKDIKGNVVKADVNWPKLLME
>VF1439 putative ATP-dependent RNA helicase RhlE
MTTTTAPANFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIA
GANTGSGKTATFALPLLQQIAELQSGKAQASKGNFVTGLVLVPTRELAKQ
VADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGGADILVATPGRLLD
LISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLALAPKQKQTLLFSA
TFPEEVQTLTQALLNNPVEIQLQSADASTVVQRVFTVNKGEKTSVLAHLI
QKNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEA
FKAGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAG
EVGLALSLIDYEDYHHFKIIEKKNKIRLEREQVEGFEVNEEITEALLASI
KPVAKPEGTGKKNKKKYKDNW
>VFB02 DNA primase TraC
MTHSTAINSTITKETEATNVSPFEQSGSNKNEMGKKRSFGKKRAVVKVSK
DIYQMVTDRVIAALENGVKPWVCPWDKTNECSMLPMNFKTKTNYSGINIL
LLWSETVEKGFTSPYWLTYKQANELGGNVMKGQKGTTIVYYKNWEKEDEE
GNKEVIPMLRTFTVFNIDQVENIEKPMVTVKETREKSEFVKLSYVEEAIH
NTEIKINHCGVRAFYSPAHDEITLPMVDRFNSSSDYYATAWHELVHATGH
KSRLDRDLKNSFGSKDYAFEELIAELGAAFCCADLGIVGEVQHESYIVSW
LERLNGDKKFIFKAASQASKAHQWLLK
>VF1352 hypothetical protein
MIPLSSSVVSGVALSKIDGEVKMLLMKRVKGGFWCHVAGSIEQGETGIDA
IVRELKEETQIDVLNLYNAQYLEQFYEASVNVIQLIPVFVVMCPPQQEVV
LNEEHTEYKWCSLEEALELAPFPNQHAVFKHVWSYFVEKPVNALYRVDIS
>VF0052 Sec-independent protein translocase protein TatD
MIDTHAHIYAKEFDEDRDAVVQRALEQGISKILLPNIDLESIEPMLKTEA
AYPEVCHSMMGLHPCYVNADVKETLAIIHSWFEKHNFIAVGEIGIDLYWD
KTFKAEQEMAFITQLNWAKEMKLPVVIHTRDSIEETLSLLKQEQDGSLSG
VFHCFGGSVDEAKAINDLGFHLGLGGVSTFKNGGMDKIIPHLDMDYLILE
TDCPYLAPVPHRGKRNEPAYTQLVAQRVADLREISLADVDAITTANAMKL
FGV
>VF0056 ATP-dependent RNA helicase RhlB
MKKTHITEQNFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIA
GQAQTGTGKTLAFLTATFNHL
>VF1144 putative ATP-dependent RNA helicase RhlE
MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTG
KTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYIKY
TSLTVTSVFGGKKMSSQERALEPGVDILVATPGRLQEHIEEENVSIANLE
FLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLASDI
LRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQVLVF
VNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVA
TDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAVSFVSR
EEELTVVQVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRT
NNPNEDQSSAERRMRLKNVIQNKARITKLKK
>VFA1156 ATP-dependent DNA helicase RecQ
MYQQTLKETFGFDSLRGGQQQVIEKVLNGHSSAAIFPTGSGKSLCYQLPA
LILPNLTLVISPLLALMKDQIAFLKSKGIAAASIDSTQTREETQAILQGV
RNGEIKILMISVERLKNERFRQFIAQINISLLVVDEAHCISEWGHNFRPD
YLKLPQDREALNIPQVLLLTATATPAVIEDMSKKFDIAQDDIVITGFYRS
NLDISIIPVEEEQKRSALFATLKQRPDQPSIVYVTLQQTAENVAQWLQSN
GIQAKAYHAGLKNDVRETIQYQFMHGEINCIVATIAFGMGVDKSDIRQVI
HFDLPKSIENYSQEIGRAGRDGLPSFCTVLANTSGLNVLENFVYGDTPDR
EAIQYVLDDIYQANETWETQLLRLSKDSNVRQLPLKTLLVYLELKKIIQA
KYSYYADYRFKTLIPVNDIIAKFQTERQQFVSTIFQCSPKAKTWHTVDFD
ALWMGFRGERIRAR
>VFA0177 O6-methylguanine-DNA methyltransferase
MNVYTQFESPIGQITVNANDEGLLGVWYESHKMELSEFGTRADDHPILKL
TVTQLKEYFRGDRRDFSIPLAAKGTEFQNKVWKALTTIPYGKTWCYKDLA
IAVGNPKASQAVGGANGKNPISIIVPCHRVIGKNGSLTGYAGGVDIKEKL
LALESNK
>VF0498 DNA polymerase III, psi subunit
MPQQALQFLNEMDISVWQVRQTSYFPALENTTLSLPETCQLLFVAPAIPT
ERDAFLFGKVLASMKLSPEQALFLSSESLEYIGEHHLDWCWFSGVSTTEL
EGVKILTSPLLSEMHSNTQSRRDLWRQICSYDN
>VFA0459 transcription-repair coupling factor
MCQAKAMDRLVCGDVGFGKTEVAMRAAFLATHNEKQVAVLVPTTLLAQQH
FENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQ
DSIKFDDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNM
AMSGMRDLSIIATPPARRLAIKTFVREKADDVIKEAILREIKRGGQVYVL
HNNVDTIQNAAEEIEKLIPEARVTLAHGQMRERELEKIMGDFYHQRFNVL
VCTTIIETGIDVPTANTIIMDRADKLGLAQLHQLRGRVGRSHHQAYAYLL
TPHPKALSKDARKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDGQSG
QIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRLPSLIPED
YIPDVNTRLSLYKRIASVSSNGELDELKVEIIDRFGTLPEATQTLLISSE
VKMLAASLKVKKLEAHGNGGYIEFEPTADINPMFLVSLLQKDPTGFALDG
PTKVKFIKDLTERQTRIKYVMDLLKLFNENRI
>VFB07 DNA repair protein RadC
MCALVGNNPRPQQREKSMFTENEKMILAEAASIIEVKIRNTSALTSPDLA
AELCVNRLVHQEREVFAILMLDNQHRLIKFVEHSVGSISSASVYPREVLK
SVLHYNAAAVIFAHNHPSGVAEPSDADRRITARLSSALELIDVKVLDHFV
IGVGETVSFAKRGWI
>VFA0460 transcription-repair coupling factor
MPIKNLLSLSLPTKANDTRSVGNLTGSSLALAIAEIEQQHQGPIIVAVTE
PQLAFRLQNEINQFSQNAVDVFPDWETLPYDSFSPHQDIISDRLSRLYHL
PQQKNGTLIVPVSTLLQRQSPQSFLHKHALVVNVGDRLSFDKLKLQLEKS
GYLHVDQVMSHGEYASRGSIIDLFPMGNGHPFRIDFFDDEIDSIRQFDPE
NQRTIEEVKSINLLPAHEFPTDDEAIEDFRIRWRQRFDARREPESVYQQI
SKGAWPAGVEYWQPLFFDETETLFDYLPDNTLLVTIGDIEKAADDFLADA
EYRYDQRRVDPLRPLLPVNELWLNTADMFALFKQYPRVKLSKEPEKEKAG
RFNPDLLELPEIAIQHQNKEPFAQFRQFYEKFSGQVIFSVESEGRREALL
ELLARIKLKPAICETMKEAMSHKNKATLVIGSAERGFILQDPCVAFICES
DLLGERVIQRRRRGDKQSASSDTIIRNLAELKIGQPVVHLDHGIGRYMGL
QTLDVGDMPAEYMMLEYQDQAKLYVPVSSLNLISRYSAGADETAPIHKLG
GEAWTKARRKAAEKVRDVAAELLDVYANALLSPVLPSNRIVKLMLILKRA
SHLKRRTIKTLRLMPYYRICAKLKPWIALCVVM
>VF0951 holliday junction DNA helicase RuvA
MIGRLRGNLLEKQPPELLIEVSGIGYEVQMPMSCFYELPEVGSEAIIYTH
YVVREDAQLLYGFNTKNERALFREVIKANGVGPKLGLAILSGMTAAQFVQ
SVEREDISTLVKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPM
DDGSEFITSPQSAVDEAVSALIALGYKPQQASKTVSQIAKPDMTSEVLIR
ESLKSMI
>VF1628 DNA polymerase II
MLTRQTREINNQSLVDLWVKCDDHIAHLLIENEDAVTFILEDKRSQYEAC
LQKENIPFHIKPTALSTFNHDSVLGLYFKNTYQKRAATQFIEQLHLPIYE
SDIRLADRYLMERFICGGLSFIGNPIQKKDHIEYRNVKIKTTDRSPKFSM
VSLDIECSEKGILYSVALHSELDTRIIMVGDSQDSNLSIQWVENEKALLV
ALESWFYQFDPDIIIGWNVINFDFRLLIQRAKWHKLSFRIGRGNSSLYWR
DSDKNRQQGFLSFPGRVVLDGIDALKTATYHFSSWSLESVAQELLKEGKS
INDQSDKMSEINRMYREDKLSLAKYNLQDCILVTRIFEHTHLLEFLIERT
KLTGVELDRVGGSVAAFTNLYLPRLHRAGYIAPNLESENWVASPGGYVMN
SKPGLYQSVIVLDFKSLYPSIIRTFNIDPLGLIEGLKQEVGTEDNQAIDG
FRGGRFHRSKHFLPKLIENLWSARDEAKRNNEKAFSQAIKIIMNSFYGVL
GSSGCRFFDHRLASSITMRGHEIMKMTRELIEAEGYEVIYGDTDSTFVTL
GQSMSSKEADTIGSSLVEKINQWWISHLSEKYAIDSALEIEYETHYRTFL
MPTIRGSETGSKKRYAGLVKKEGKEEIVFKGLETVRTDWTPLSQEFQKTL
FHKVFHQQDVKEYVRQYVDDTKQGKLDKQLIYRKRLRRQLDEYQKNVPPH
VKAARLADYRNQQIGKRPQYQYGGWIEYVITTAGPEPVEYINNPIDYDHY
VEKQLKPIADGILPFIGLDFNELSNSQLGLF
>VF2289 DNA adenine methylase
MKKHRAFLKWAGGKYSLVEEIQRHLPDARKLIEPFVGAGSVFLNTDYDHY
LLADINPDLINLYNHLKDEPERFIEDARALFQPEYNKKEVYLALRVEFNQ
CTDTYRRSLLFLYMNRHGFNGLCRYNKKGGFNVPFGSYKKPYFPEKEMVF
FAEKAKKATFVCEGYMDTFKRARKGAVVYCDPPYAPLSTTANFTSYAGNG
FSLDDQAALADIAEKAAFERDIPVLISNHDTTLTRRLYHGATLNTIKVKR
TISRNGAGRNKVDELMALFHAPKCTE