Gene list
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COG category: Replication, recombination and repair
Organism: Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN
Number of genes found: 31
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Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
deaD | BPEN_113 | cold-shock DeaD box ATP-dependent RNA helicase | SubName: Full=Cold-shock DeaD box ATP-dependent RNA helicase; | chromosome | CDS | 133041 | 1710 | + | 0.31462 |
dnaB | BPEN_027 | replicative DNA helicase | SubName: Full=Replicative DNA helicase; | chromosome | CDS | 32173 | 1416 | + | 0.336864 |
dnaE | BPEN_294 | DNA polymerase III, alpha chain | SubName: Full=DNA polymerase III, alpha chain; | chromosome | CDS | 340151 | 3492 | + | 0.305269 |
dnaG | BPEN_058 | DNA primase | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome | CDS | 69956 | 1746 | - | 0.290378 |
dnaN | BPEN_015 | DNA polymerase III, beta-subunit | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome | CDS | 15161 | 1104 | + | 0.306159 |
dnaQ | BPEN_232 | DNA polymerase III, epsilon subunit | SubName: Full=DNA polymerase III, epsilon subunit; | chromosome | CDS | 262500 | 750 | + | 0.290667 |
dnaX | BPEN_309 | DNA polymerase III, tau and gamma subunits | SubName: Full=DNA polymerase III, tau and gamma subunits; | chromosome | CDS | 364540 | 2097 | + | 0.279447 |
gyrA | BPEN_492 | DNA gyrase, subunit A | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome | CDS | 586917 | 2532 | - | 0.341627 |
gyrB | BPEN_016 | DNA gyrase, subunit B | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome | CDS | 16575 | 2415 | + | 0.330849 |
holA | BPEN_319 | DNA polymerase III, delta subunit | SubName: Full=DNA polymerase III, delta subunit; | chromosome | CDS | 378161 | 1029 | - | 0.258503 |
holB | BPEN_412 | DNA polymerase III, delta prime subunit | SubName: Full=DNA polymerase III, delta prime subunit; | chromosome | CDS | 488141 | 1002 | - | 0.294411 |
holC | BPEN_034 | DNA polymerase III, chi subunit | SubName: Full=DNA polymerase III, chi subunit; | chromosome | CDS | 43659 | 453 | - | 0.300221 |
holD | BPEN_114 | DNA polymerase III, psi subunit | RecName: Full=DNA polymerase III subunit psi; | chromosome | CDS | 134912 | 423 | + | 0.309693 |
ligA | BPEN_524 | DNA ligase | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome | CDS | 625784 | 1788 | - | 0.308166 |
mutY | BPEN_256 | adenine DNA glycosylase | SubName: Full=Adenine DNA glycosylase; | chromosome | CDS | 289949 | 1050 | - | 0.297143 |
nth | BPEN_383 | endonuclease III | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome | CDS | 449664 | 642 | - | 0.313084 |
polA | BPEN_645 | DNA polymerase I | SubName: Full=DNA polymerase I; | chromosome | CDS | 769643 | 2811 | - | 0.290644 |
recB | BPEN_276 | exonuclease V | SubName: Full=Exonuclease V; | chromosome | CDS | 319015 | 3564 | - | 0.283389 |
recC | BPEN_274 | exonuclease V, gamma chain | SubName: Full=Exonuclease V, gamma chain; | chromosome | CDS | 313298 | 3402 | + | 0.280717 |
recD | BPEN_275 | exonuclease V, alpha chain | SubName: Full=Exonuclease V, alpha chain; | chromosome | CDS | 316824 | 1908 | - | 0.29979 |
rnhA | BPEN_231 | ribonuclease H | RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; | chromosome | CDS | 261986 | 456 | - | 0.326754 |
rnhB | BPEN_293 | ribonuclease HII | RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; | chromosome | CDS | 339451 | 654 | + | 0.311927 |
rnt | BPEN_379 | ribonuclease T | RecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; | chromosome | CDS | 445293 | 654 | - | 0.37156 |
sbcB | BPEN_476 | exonuclease I | RecName: Full=Exodeoxyribonuclease I; EC=3.1.11.1; | chromosome | CDS | 567703 | 1503 | + | 0.284764 |
ssb | BPEN_028 | ssDNA-binding protein controls activity of RecBCD nuclease | RecName: Full=Single-stranded DNA-binding protein; | chromosome | CDS | 34030 | 492 | + | 0.361789 |
ung | BPEN_563 | uracil-DNA glycosylase | RecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; | chromosome | CDS | 673829 | 693 | + | 0.318903 |
xthA | BPEN_449 | exonuclease III | SubName: Full=Exonuclease III; | chromosome | CDS | 533574 | 807 | + | 0.337051 |
ycfH | BPEN_411 | putative metallo-dependent hydrolase | SubName: Full=Putative metallo-dependent hydrolase; | chromosome | CDS | 487339 | 786 | - | 0.315522 |
ygdP | BPEN_272 | nucleotide hydrolase | RecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; | chromosome | CDS | 311330 | 477 | + | 0.331237 |
yhhF | BPEN_655 | putative methyltransferase with SAM-dependent methyltransferase domain | RecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; | chromosome | CDS | 786893 | 588 | + | 0.287415 |
yqgF | BPEN_257 | putative endonuclease involved in recombination | RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; | chromosome | CDS | 291941 | 435 | - | 0.337931 |