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2024-05-07 08:11:46

Gene list

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COG category: Replication, recombination and repair
Organism: Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043

Number of genes found: 193

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Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECA2645 putative ATPasechromosome CDS2975717 1344 - 0.525298
NA ECA2195 transposase for insertion sequence element IS4 (partial)chromosome CDS2497077 438 - 0.504566
NA ECA0649 putative DNA mismatch repair proteinchromosome CDS720949 1992 + 0.331827
NA ECA0688 conserved hypothetical proteinchromosome CDS759882 417 + 0.467626
NA ECA2855 conserved hypothetical proteinchromosome CDS3197249 474 - 0.533755
NA ECA2892 hypothetical proteinchromosome CDS3239133 804 - 0.366915
NA ECA3119 hypothetical proteinchromosome CDS3483328 1104 - 0.518116
NA ECA0519 replicative DNA helicasechromosome CDS592768 1395 + 0.465233
NA ECA1601 transposase (partial)chromosome CDS1858446 543 + 0.451197
NA ECA3458 conserved hypothetical proteinchromosome CDS3876891 699 - 0.351931
NA ECA3389 probable integrase/recombinase proteinchromosome CDS3802908 1023 - 0.613881
NA ECA1675 putative integrase (partial)chromosome CDS1923640 342 - 0.409357
NA ECA1257 conserved hypothetical proteinchromosome CDS1430628 717 + 0.535565
NA ECA3407 DnaG primase-like proteinchromosome CDS3817656 2880 - 0.582986
NA ECA4429 putative transposasechromosome CDS4969443 225 - 0.488889
NA ECA2379 conserved hypothetical proteinchromosome CDS2689954 579 + 0.557858
NA ECA0835 prophage integrasechromosome CDS925541 1281 - 0.479313
NA ECA4291 DnaG primase-like proteinchromosome CDS4805080 2919 + 0.590613
NA ECA1673 integrase (partial)chromosome CDS1923048 159 - 0.496855
NA ECA1639 hypothetical proteinchromosome CDS1891965 1275 + 0.345882
NA ECA1652 transposasechromosome CDS1902248 840 - 0.488095
NA ECA1164 putative 6-O-methylguanine DNA methyltransferasechromosome CDS1319996 321 - 0.498442
NA ECA2178 prophage integrase (partial)chromosome CDS2480847 336 + 0.416667
NA ECA2508 putative integrase/recombinasechromosome CDS2825271 1611 - 0.436375
NA ECA2879 integrasechromosome CDS3226143 1254 - 0.486443
NA ECA0472 putative TatD-family deoxyribonucleasechromosome CDS536846 798 + 0.545113
NA ECA2375 putative ATP-dependent helicasechromosome CDS2685498 1920 - 0.555208
NA ECA4292 probable integrase/recombinasechromosome CDS4808058 1053 + 0.608737
NA ECA3996 putative DNA topoisomerasechromosome CDS4479616 1119 - 0.484361
NA ECA2122 probable integrase/recombinase (partial)chromosome CDS2427394 192 + 0.619792
NA ECA4282 DnaG primase-like proteinchromosome CDS4798448 2919 + 0.590613
NA ECA0407 putative integrase (partial)chromosome CDS466210 168 + 0.488095
NA ECA2504 resolvasechromosome CDS2821764 639 - 0.474178
NA ECA2637 phage integrasechromosome CDS2965685 987 + 0.436677
NA ECA0672 putative phage-related proteinchromosome CDS743861 2679 + 0.516984
NA ECA3926 conserved hypothetical proteinchromosome CDS4393907 420 + 0.533333
NA ECA0847 putative mutT/NUDIX family proteinchromosome CDS937554 582 + 0.505155
NA ECA0587 conserved hypothetical proteinchromosome CDS649514 891 + 0.417508
NA ECA2625 phage DNA methylasechromosome CDS2957426 690 - 0.513043
NA ECA3340 ribonuclease HIchromosome CDS3749751 465 + 0.52043
NA ECA1057 phage-related hypothetical proteinchromosome CDS1183908 2010 + 0.308955
NA ECA0611 conserved hypothetical proteinchromosome CDS683332 1461 + 0.490075
NA ECA2180 hypothetical proteinchromosome CDS2481997 2271 + 0.346543
NA ECA2629 phage DNA adenine methylasechromosome CDS2962068 849 - 0.471143
NA ECA2201 putative integrasechromosome CDS2499415 567 - 0.525573
NA ECA0665 putative phage integrasechromosome CDS739283 1407 + 0.451315
NA ECA3400 DnaG primase-like proteinchromosome CDS3811018 2892 - 0.585754
NA ECA1647 hypothetical proteinchromosome CDS1899338 687 + 0.417758
NA ECA0834 conserved hypothetical proteinchromosome CDS923068 2445 - 0.354192
NA ECA3460 phage integrasechromosome CDS3878830 1227 - 0.445803
NA ECA2014 conserved hypothetical proteinchromosome CDS2287361 1200 + 0.493333
NA ECA0043 putative DNA ligasechromosome CDS51400 1692 + 0.507683
NA ECA3042 putative NUDIX hydrolasechromosome CDS3400193 681 - 0.506608
NA ECA2441 putative MutT family proteinchromosome CDS2756503 447 + 0.534676
NA ECA2006 ATP-dependent helicasechromosome CDS2275609 3888 + 0.551698
NA ECA1054 putative integrasechromosome CDS1180862 1470 + 0.427211
NA ECA2660 conserved hypothetical proteinchromosome CDS2993972 1665 - 0.539339
NA ECA1153 putative exported proteinchromosome CDS1308888 366 + 0.461749
NA ECA2559 transposase for the IS1541 insertion elementchromosome CDS2889900 459 - 0.46841
NA ECA0725 conserved hypothetical proteinchromosome CDS793859 312 - 0.519231
NA ECA0614 putative phage integrasechromosome CDS687380 1023 + 0.455523
NA ECA3390 DnaG primase-like proteinchromosome CDS3803975 2907 - 0.582731
NA ECA0593 putative DNA repair proteinchromosome CDS653073 414 + 0.471014
NA ECA3406 probable integrase/recombinase proteinchromosome CDS3816588 1035 - 0.606763
NA ECA2306 probable phage integrasechromosome CDS2612727 1563 + 0.483045
NA ECA4347 conserved hypothetical proteinchromosome CDS4869761 576 + 0.553819
NA ECA3399 probable integrase/recombinasechromosome CDS3809930 1059 - 0.612842
NA ECA0907 putative DNA-3-methyladenine glycosylasechromosome CDS1012423 663 - 0.570136
NA ECA1056 putative phage-related reverse transcriptase/maturase family proteinchromosome CDS1182640 1272 + 0.310535
NA ECA3704 conserved hypothetical phage-related proteinchromosome CDS4148757 1770 - 0.555932
NA ECA2182 prophage integrasechromosome CDS2485016 1050 - 0.507619
NA ECA1804 conserved hypothetical proteinchromosome CDS2050132 798 + 0.530075
NA ECA0321 conserved hypothetical proteinchromosome CDS370172 243 - 0.567901
NA ECA3314 ATP-dependent helicasechromosome CDS3725031 2481 - 0.570738
NA ECA1060 putative integrasechromosome CDS1188401 1494 + 0.311245
NA ECA4283 probable integrase/recombinasechromosome CDS4801426 1053 + 0.608737
NA ECA2744 putative helicasechromosome CDS3084876 1761 + 0.539466
NA ECA1067 conserved hypothetical proteinchromosome CDS1195301 1344 - 0.290923
NA ECA3415 probable integrase/recombinasechromosome CDS3823518 1035 - 0.606763
NA ECA3679 conserved hypothetical proteinchromosome CDS4126156 981 + 0.539246
NA ECA1653 transposasechromosome CDS1903090 267 - 0.434457
NA ECA3416 DnaG primase-like proteinchromosome CDS3824586 2880 - 0.583681
NA ECA1059 putative integrasechromosome CDS1187197 1212 + 0.330858
NA ECA1766 conserved hypothetical proteinchromosome CDS2013548 423 + 0.458629
NA ECA0667 conserved hypothetical proteinchromosome CDS741625 192 + 0.447917
ada ECA0908 ADA regulatory protein (methylated-DNA--protein-cysteine methyltransferase)chromosome CDS1013309 1116 + 0.584229
alkB ECA0909 alkylated DNA repair proteinchromosome CDS1014421 657 + 0.56621
ardC ECA1600 antirestriction proteinchromosome CDS1857403 933 + 0.505895
dam ECA4090 DNA adenine methylasechromosome CDS4559278 813 - 0.463715
dbpA ECA3092 ATP-independent RNA helicasechromosome CDS3451774 1383 - 0.53073
deaD ECA0718 ATP-independent RNA helicasechromosome CDS787369 1914 + 0.543365
dinB ECA3468 DNA polymerase IVchromosome CDS3888324 1059 - 0.534467
dinG ECA2786 probable ATP-dependent helicasechromosome CDS3125091 2100 - 0.527619
dnaA ECA4441 chromosomal replication initiator proteinchromosome CDS4983699 1398 - 0.509299
dnaB ECA3664 replicative DNA helicasechromosome CDS4114440 1407 + 0.537313
dnaE ECA1046 DNA polymerase III alpha subunitchromosome CDS1169670 3483 + 0.537468
dnaG ECA0681 DNA primasechromosome CDS753277 1755 - 0.507692
dnaN ECA4440 DNA polymerase III, beta chainchromosome CDS4982594 1101 - 0.543143
dnaQ ECA3339 DNA polymerase III, epsilon chainchromosome CDS3748958 738 - 0.47561
dnaX ECA1176 DNA polymerase III subunit tauchromosome CDS1330287 2076 + 0.556358
ehpF ECA2697 putative phenazine antibiotic biosynthesis proteinchromosome CDS3033456 1062 - 0.492467
fis ECA0255 DNA-binding proteinchromosome CDS299978 297 - 0.484848
gyrA ECA1201 DNA gyrase subunit Achromosome CDS1363499 2640 + 0.535227
gyrB ECA4438 DNA gyrase subunit Bchromosome CDS4979023 2418 - 0.532672
helD ECA1756 helicase IVchromosome CDS2006148 2058 + 0.511176
hepA ECA3853 RNA polymerase associated proteinchromosome CDS4309359 2904 + 0.558884
holA ECA1307 DNA polymerase III, delta subunitchromosome CDS1479093 1026 - 0.537037
holB ECA1803 DNA polymerase III, delta' subunitchromosome CDS2049102 1011 + 0.534125
holC ECA0403 DNA polymerase III, chi subunitchromosome CDS460923 450 - 0.577778
holD ECA0734 DNA polymerase III, psi subunitchromosome CDS802996 432 - 0.597222
hrpG ECA2099 type III secretion proteinchromosome CDS2385990 411 + 0.591241
hupA ECA0238 DNA-binding protein HU-alphachromosome CDS277924 273 + 0.428571
hupB ECA1151 DNA-binding protein HU-betachromosome CDS1306200 273 + 0.479853
ihfA ECA2416 integration host factor alpha-subunitchromosome CDS2728548 297 - 0.491582
ihfB ECA2590 integration host factor beta-subunitchromosome CDS2923649 285 - 0.484211
intA ECA2750 prophage integrasechromosome CDS3092131 1251 + 0.523581
intB ECA2889 integrasechromosome CDS3236381 1287 + 0.478632
intB ECA1679 phage integrasechromosome CDS1925682 1278 - 0.473396
ligA ECA3583 DNA ligasechromosome CDS4025196 2046 - 0.557185
mfd ECA1821 transcription-repair coupling factorchromosome CDS2066956 3450 - 0.555362
mug ECA0679 G/U mismatch-specific DNA glycosylasechromosome CDS750702 504 + 0.537698
mutH ECA0984 DNA mismatch repair proteinchromosome CDS1095149 696 - 0.534483
mutL ECA3936 DNA mismatch repair proteinchromosome CDS4403886 1956 - 0.541411
mutM ECA0148 formamidopyrimidine-DNA glycosylasechromosome CDS168516 810 + 0.519753
mutS ECA1053 DNA mismatch repair proteinchromosome CDS1178139 2565 - 0.552827
mutT ECA3805 mutator protein (7,8-dihydro-8-oxoguanine-triphosphatase)chromosome CDS4252404 396 - 0.537879
mutY ECA0976 A/G-specific adenine glycosylasechromosome CDS1085955 1107 - 0.566396
nei ECA1355 endonuclease VIIIchromosome CDS1534199 792 + 0.54798
nfo ECA2726 endonuclease IVchromosome CDS3065575 846 + 0.533097
nth ECA2282 endonuclease IIIchromosome CDS2585970 636 + 0.498428
nucM ECA3922 endonucleasechromosome CDS4390561 699 + 0.553648
nudB ECA2495 DATP pyrophosphohydrolasechromosome CDS2811511 444 - 0.518018
nudC ECA0234 putative NADH pyrophosphatasechromosome CDS274385 783 + 0.545338
nudE ECA4100 ADP compounds hydrolasechromosome CDS4569837 558 - 0.53405
nudF ECA0331 ADP-ribose pyrophosphatasechromosome CDS379620 633 + 0.526066
nudH ECA0985 (di)nucleoside polyphosphate hydrolasechromosome CDS1096541 534 + 0.513109
ogt ECA2454 probable methylated DNA--protein-cysteine methyltransferasechromosome CDS2769657 537 - 0.478585
ogt ECA2208 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS2507444 534 - 0.509363
parC ECA0345 topoisomerase IV subunit Achromosome CDS392535 2271 + 0.558344
parE ECA0335 topoisomerase IV subunit Bchromosome CDS382412 1896 + 0.545886
phrB ECA1349 deoxyribodipyrimidine photolyasechromosome CDS1528762 1494 + 0.543507
pilP ECA0537 putative Type IV pilus proteinchromosome CDS608990 498 + 0.512048
polA ECA0021 putative DNA polymerase Ichromosome CDS25826 2790 + 0.5
polB ECA3852 DNA polymerase IIchromosome CDS4306807 2367 + 0.547951
priA ECA4258 primosomal protein N'chromosome CDS4770998 2199 + 0.575261
priB ECA3612 primosomal replication protein Nchromosome CDS4060253 321 - 0.507788
priC ECA1173 primosomal replication protein N''chromosome CDS1328319 537 - 0.521415
radC ECA0145 DNA repair proteinchromosome CDS166978 666 + 0.515015
rci ECA0546 shufflon-specific DNA recombinasechromosome CDS616235 1128 + 0.429078
rdgC ECA1106 recombination associated proteinchromosome CDS1253391 930 - 0.502151
recA ECA3369 RecA protein (recombinase A)chromosome CDS3785644 1074 - 0.484171
recB ECA0995 exodeoxyribonuclease V beta chainchromosome CDS1109886 3627 + 0.540116
recC ECA0993 exodeoxyribonuclease V gamma chainchromosome CDS1103446 3399 + 0.532804
recD ECA0996 exodeoxyribonuclease V alpha chainchromosome CDS1113509 1863 + 0.5781
recF ECA4439 DNA replication and repair proteinchromosome CDS4981459 1086 - 0.548803
recG ECA0036 putative ATP-dependent DNA helicasechromosome CDS45107 2082 - 0.561479
recJ ECA0772 single-stranded DNA-specific exonucleasechromosome CDS841615 1746 + 0.556128
recN ECA0840 DNA repair proteinchromosome CDS929441 1662 - 0.544525
recO ECA3276 DNA repair proteinchromosome CDS3681037 738 - 0.49458
recQ ECA4172 ATP-dependent DNA helicasechromosome CDS4662224 1827 - 0.552271
recR ECA1178 recombination proteinchromosome CDS1332732 606 + 0.566007
rep ECA4215 ATP-dependent DNA helicasechromosome CDS4712411 2022 - 0.523739
rhlB ECA4213 putative ATP-dependent RNA helicasechromosome CDS4709598 1293 + 0.524362
rhlE ECA2805 putative ATP-dependent RNA helicasechromosome CDS3145672 1452 - 0.568182
rnhB ECA1045 ribonuclease HIIchromosome CDS1168997 597 + 0.544389
rnt ECA1928 ribonuclease Tchromosome CDS2186929 672 - 0.520833
ruvA ECA2492 holliday junction DNA helicasechromosome CDS2809306 618 - 0.538835
ruvB ECA2491 holliday junction DNA helicasechromosome CDS2808294 1005 - 0.528358
ruvC ECA2493 crossover junction endodeoxyribonucleasechromosome CDS2810151 513 - 0.549708
sbcB ECA2565 exodeoxyribonuclease Ichromosome CDS2895155 1428 + 0.533613
sbcC ECA1108 exonucleasechromosome CDS1255587 3684 - 0.532573
sbcD ECA1109 exonuclease subunit Dchromosome CDS1259267 1227 - 0.531377
seqA ECA1335 putative negative regulator of replication initiationchromosome CDS1511938 537 + 0.521415
smf ECA3998 conserved hypothetical proteinchromosome CDS4481200 1122 - 0.509804
srmB ECA3287 ATP-dependent RNA helicasechromosome CDS3692383 1326 + 0.527149
ssb ECA3690 single-strand binding proteinchromosome CDS4140147 564 + 0.576241
tag ECA0082 DNA-3-methyladenine glycosylase Ichromosome CDS96724 564 - 0.498227
tatD ECA0202 deoxyribonucleasechromosome CDS227773 783 + 0.535121
tnpA ECA2197 transposase transposon tn1721 (partial)chromosome CDS2497516 255 - 0.588235
topA ECA2286 DNA topoisomerase Ichromosome CDS2590532 2601 - 0.519416
topB ECA0525 putative DNA topoisomerasechromosome CDS599597 2019 + 0.430411
topB ECA2337 DNA topoisomerase IIIchromosome CDS2646652 1926 - 0.537902
ung ECA3289 uracil-DNA glycosylasechromosome CDS3694571 687 + 0.516739
uvrA ECA3689 excision nuclease subunit Achromosome CDS4137067 2835 - 0.564374
uvrB ECA2820 excision nuclease ABC subunit Bchromosome CDS3159374 2013 - 0.544461
uvrC ECA2881 excinuclease ABC subunit Cchromosome CDS3228642 1833 - 0.487725
uvrD ECA4179 DNA helicase IIchromosome CDS4670269 2163 - 0.558484
xerC ECA4181 integrase/recombinasechromosome CDS4673230 936 - 0.55235
xerD ECA0770 integrase/recombinasechromosome CDS839867 900 + 0.547778
xni ECA1018 exodeoxyribonuclease IXchromosome CDS1140092 783 - 0.538953
xseA ECA3210 exodeoxyribonuclease VII large subunitchromosome CDS3592378 1389 + 0.561555
xseB ECA1133 exodeoxyribonuclease VII small subunitchromosome CDS1285525 249 - 0.538153
xthA ECA2335 exodeoxyribonuclease IIIchromosome CDS2645457 807 + 0.520446