Gene list
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COG category: Replication, recombination and repair
Organism: Yersinia pseudotuberculosis IP 32953, IP 32953
Number of genes found: 225
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pseudotuberculosis IP 32953, IP 32953 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | YPTB3343 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3974595 | 426 | + | 0.481221 |
NA | YPTB1778 | hypothetical | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2130242 | 339 | - | 0.427729 |
NA | YPTB2792 | conserved hypothetical protein | RecName: Full=DnaA regulatory inactivator Hda; | chromosome | CDS | 3294852 | 708 | - | 0.477401 |
NA | YPTB2464 | putative deoxyribonuclease | SubName: Full=Putative deoxyribonuclease; | chromosome | CDS | 2909512 | 810 | - | 0.495062 |
NA | YPTB2054 | putative DEAD box family helicase | SubName: Full=Putative DEAD box family helicase; | chromosome | CDS | 2419413 | 1905 | + | 0.507087 |
NA | YPTB0220 | conserved hypothetical protein | RecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; | chromosome | CDS | 262318 | 663 | - | 0.503771 |
NA | YPTB1794 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2142438 | 777 | + | 0.474903 |
NA | YPTB3886 | putative integrase | SubName: Full=Putative integrase; | chromosome | CDS | 4636419 | 1215 | - | 0.503704 |
NA | YPTB1864 | similar to Orf81 bacteriophage 186 | SubName: Full=Similar to Orf81 bacteriophage 186; | chromosome | CDS | 2212145 | 654 | - | 0.415902 |
NA | YPTB3872 | putative IS100 transposase | SubName: Full=Putative IS100 transposase; | chromosome | CDS | 4621286 | 330 | - | 0.493939 |
NA | pYV0016 | tnpA; putative transposase protein | SubName: Full=TnpA putative transposase protein; | pYV | CDS | 11386 | 2316 | - | 0.51943 |
NA | YPTB3875 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase IS100; | chromosome | CDS | 4623749 | 1023 | + | 0.527859 |
NA | YPTB0320 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 386455 | 594 | + | 0.545455 |
NA | pYV0051 | hypothetical protein | RecName: Full=Uncharacterized protein pYV0051; | pYV | CDS | 35593 | 324 | + | 0.382716 |
NA | YPTB3399 | ADP-ribose pyrophosphatase | SubName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; | chromosome | CDS | 4036328 | 633 | - | 0.494471 |
NA | pYV0093 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 63967 | 180 | + | 0.472222 |
NA | YPTB1042 | phage integrase (partial) | chromosome | pseudo | 1247159 | 300 | - | 0.5 | |
NA | YPTB1883 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2223939 | 420 | - | 0.533333 |
NA | YPTB3129 | Possible phage integrase/recombinase | SubName: Full=Possible phage integrase/recombinase; | chromosome | CDS | 3688397 | 984 | - | 0.443089 |
NA | YPTB2510 | conserved hypothetical protein | RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; | chromosome | CDS | 2963088 | 987 | - | 0.478217 |
NA | YPTB0989 | putative primosomal replication protein N'' | SubName: Full=Putative primosomal replication protein N; | chromosome | CDS | 1188732 | 537 | - | 0.433892 |
NA | YPTB0498 | conserved hypothetical protein | RecName: Full=UPF0213 protein YPTB0498; | chromosome | CDS | 587387 | 288 | - | 0.524306 |
NA | pYV0018 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase (Putative IS1617 trans-TRUNCATED-); | pYV | CDS | 15467 | 267 | + | 0.479401 |
NA | YPTB1403 | putative polynucleotide ATPase protein | SubName: Full=Putative polynucleotide ATPase protein; | chromosome | CDS | 1674634 | 1344 | + | 0.526786 |
NA | YPTB1458 | putative DNA helicase IV | SubName: Full=Putative DNA helicase IV; EC=3.6.1.-; | chromosome | CDS | 1752542 | 2055 | + | 0.483212 |
NA | YPTB1808 | putative transposase IS100 | SubName: Full=Putative transposase; SubName: Full=Putative transposase IS100; | chromosome | CDS | 2154075 | 1023 | + | 0.527859 |
NA | YPTB1774 | putative integrase | SubName: Full=Putative integrase; | chromosome | CDS | 2125870 | 1056 | + | 0.464015 |
NA | pYV0022 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 17915 | 1173 | - | 0.544757 |
NA | YPTB1586 | putative IS100 transposase | SubName: Full=Putative IS100 transposase; | chromosome | CDS | 1915048 | 780 | + | 0.503846 |
NA | YPTB3310 | transposase for insertion sequence IS1661 | SubName: Full=Transposase for insertion sequence IS1661; | chromosome | CDS | 3947657 | 786 | + | 0.464377 |
NA | YPTB0186 | putative transposase for IS285 insertion element | SubName: Full=Putative transposase; SubName: Full=Putative transposase for IS285 insertion element; SubName: Full=Putative transposase-like protein; | chromosome | CDS | 225858 | 1209 | - | 0.497105 |
NA | YPTB0068 | bifunctional regulatory protein/DNA repair protein | SubName: Full=Bifunctional regulatory protein/DNA repair protein; EC=2.1.1.63; | chromosome | CDS | 78736 | 1065 | + | 0.522066 |
NA | pYV0023 | possible transposase remnant | SubName: Full=Possible transposase remnant; | pYV | CDS | 19220 | 615 | + | 0.55122 |
NA | pYV0095 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 66154 | 537 | + | 0.489758 |
NA | YPTB1809 | putative IS100 transposase | SubName: Full=Putative IS100 transposase; | chromosome | CDS | 2155097 | 780 | + | 0.503846 |
NA | YPTB3899 | transposase for insertion sequence IS1661 | SubName: Full=Transposase for insertion sequence IS1661; | chromosome | CDS | 4654550 | 786 | + | 0.463104 |
NA | YPTB1300 | putative DEAD box helicase family protein | SubName: Full=Putative DEAD box helicase family protein; | chromosome | CDS | 1547207 | 1758 | - | 0.526735 |
NA | pYV0017 | putative resolvase | SubName: Full=Putative resolvase; | pYV | CDS | 13865 | 552 | + | 0.46558 |
NA | pYV0008 | possible transposase remnant | SubName: Full=Possible transposase remnant; | pYV | CDS | 6779 | 405 | + | 0.516049 |
NA | YPTB1776 | putative integrase | SubName: Full=Putative integrase; | chromosome | CDS | 2128303 | 1023 | - | 0.437928 |
NA | YPTB3422 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4063950 | 1377 | - | 0.488017 |
NA | pYV0028 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 21960 | 204 | - | 0.480392 |
NA | YPTB3209 | Putative endonuclease involved in recombination. | RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; | chromosome | CDS | 3774692 | 423 | + | 0.529551 |
NA | pYV0019 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 15757 | 810 | + | 0.507407 |
NA | YPTB0562 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 663710 | 240 | - | 0.4125 |
NA | YPTB3311 | Putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase for IS285 insertion element; SubName: Full=Putative transposase-like protein; | chromosome | CDS | 3949116 | 1209 | + | 0.497105 |
NA | YPTB0704 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase for IS285 insertion element; SubName: Full=Putative transposase-like protein; | chromosome | CDS | 842257 | 1209 | + | 0.497105 |
NA | YPTB0977 | putative 6-O-methylguanine DNA methyltransferase family protein | SubName: Full=Putative 6-O-methylguanine DNA methyltransferase family protein; | chromosome | CDS | 1174956 | 564 | - | 0.491135 |
NA | YPTB3467 | Putative kinase protein | SubName: Full=Putative kinase protein; | chromosome | CDS | 4127400 | 1500 | + | 0.491333 |
NA | YPTB3628 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 4321182 | 798 | - | 0.501253 |
NA | pYV0091 | putative transposase | RecName: Full=Low calcium response locus protein T; | pYV | CDS | 63141 | 423 | + | 0.453901 |
NA | YPTB1708 | putative DNA-3-methyladenine glycosidase | SubName: Full=Putative DNA-3-methyladenine glycosidase; EC=3.2.2.21; | chromosome | CDS | 2060514 | 612 | - | 0.49183 |
NA | YPTB1585 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase IS100; | chromosome | CDS | 1914026 | 1023 | + | 0.527859 |
NA | pYV0035 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 26357 | 459 | - | 0.551198 |
NA | YPTB3662 | putative DNA-binding protein | SubName: Full=Putative DNA-binding protein; | chromosome | CDS | 4375447 | 561 | - | 0.467023 |
NA | YPTB2480 | (M29945) ORF 2; putative [Yersinia enterocolitica] | SubName: Full=(M29945) ORF 2 putative [Yersinia enterocolitica]; | chromosome | CDS | 2926777 | 117 | - | 0.444444 |
NA | YPTB1648 | MutT-family protein | RecName: Full=Uncharacterized Nudix hydrolase NudL; EC=3.6.1.-; | chromosome | CDS | 2000654 | 600 | - | 0.501667 |
NA | YPTB0302 | putative transposase | SubName: Full=Putative transposase; | chromosome | CDS | 366568 | 756 | + | 0.496032 |
NA | pYV0010 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 7978 | 459 | - | 0.555556 |
NA | YPTB0038 | putative DNA ligase | RecName: Full=DNA ligase B; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)] B; | chromosome | CDS | 51203 | 1704 | + | 0.482394 |
NA | pYV0001 | ypkA; putative targeted effector protein kinase | RecName: Full=Protein kinase YpkA; Short=Protein kinase A; EC=2.7.11.1; AltName: Full=Targeted effector protein kinase; Flags: Precursor; | pYV | CDS | 12 | 2199 | - | 0.482947 |
NA | YPTB1891 | weak similarity to Vibrio transposase | SubName: Full=Weak similarity to Vibrio transposase; | chromosome | CDS | 2232455 | 303 | - | 0.458746 |
NA | YPTB3494 | Conserved hypothetical protein | RecName: Full=UPF0102 protein YPTB3494; | chromosome | CDS | 4160558 | 354 | + | 0.545198 |
NA | pYV0092 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 63560 | 402 | + | 0.470149 |
NA | YPTB1133 | putative IS100 transposase | SubName: Full=Putative IS100 transposase; | chromosome | CDS | 1358149 | 780 | + | 0.503846 |
NA | YPTB0362 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 428763 | 1419 | + | 0.525018 |
NA | YPTB1286 | putative bacteriophage protein GP48 | SubName: Full=Putative bacteriophage protein GP48; | chromosome | CDS | 1535004 | 603 | + | 0.547264 |
NA | YPTB3937 | transposase for insertion sequence IS1661 | SubName: Full=Transposase for insertion sequence IS1661; | chromosome | CDS | 4701470 | 786 | - | 0.464377 |
NA | YPTB1905 | putative transposase (IS285) | SubName: Full=Putative transposase (IS285); | chromosome | CDS | 2239737 | 339 | + | 0.471976 |
NA | YPTB1797 | putative DNA methyltransferase | SubName: Full=Putative DNA methyltransferase; | chromosome | CDS | 2144698 | 927 | + | 0.482201 |
NA | YPTB3551 | putative insecticial toxin | SubName: Full=Putative insecticial toxin; | chromosome | CDS | 4218022 | 2493 | + | 0.389892 |
NA | YPTB3309 | Insertion element IS1661 DNA-binding protein. | SubName: Full=Insertion element IS1661 DNA-binding protein; | chromosome | CDS | 3947088 | 516 | + | 0.478682 |
NA | pYV0003 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 2919 | 321 | - | 0.510903 |
NA | YPTB0666 | putative IS1400 transposase B | SubName: Full=Putative IS1400 transposase B; | chromosome | CDS | 796037 | 378 | - | 0.494709 |
NA | pYV0034 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 26051 | 195 | - | 0.497436 |
NA | YPTB3036 | probable (di)nucleoside polyphosphate hydrolase | RecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; | chromosome | CDS | 3584418 | 528 | - | 0.479167 |
NA | YPTB2096 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase for IS285 insertion element; SubName: Full=Putative transposase-like protein; | chromosome | CDS | 2467797 | 1209 | + | 0.497105 |
NA | YPTB1830 | bacteriophage hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2174583 | 1392 | + | 0.469828 |
NA | YPTB1872 | putative bacteriophage integrase | SubName: Full=Putative bacteriophage integrase; | chromosome | CDS | 2217547 | 420 | + | 0.433333 |
NA | YPTB2757 | conserved hypothetical protein | RecName: Full=GDP-mannose pyrophosphatase NudK; EC=3.6.1.-; | chromosome | CDS | 3257744 | 624 | - | 0.471154 |
NA | YPTB1388 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1652290 | 1668 | + | 0.505995 |
NA | YPTB1874 | putative bacteriophage integrase | SubName: Full=Putative bacteriophage integrase; | chromosome | CDS | 2218415 | 333 | + | 0.462462 |
NA | YPTB3876 | putative IS100 transposase | SubName: Full=Putative IS100 transposase; | chromosome | CDS | 4624771 | 780 | + | 0.503846 |
NA | YPTB0964 | possible DNA uptake protein ComEA related protein | SubName: Full=Possible DNA uptake protein ComEA related protein; Flags: Precursor; | chromosome | CDS | 1160345 | 447 | + | 0.434004 |
NA | pYV0021 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 17484 | 432 | - | 0.571759 |
NA | YPTB0304 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase IS100; | chromosome | CDS | 368495 | 1023 | - | 0.527859 |
NA | YPTB0292 | conserved hypothetical protein | RecName: Full=NADH pyrophosphatase; EC=3.6.1.22; | chromosome | CDS | 351459 | 783 | + | 0.507024 |
NA | YPTB2429 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2872304 | 447 | + | 0.49217 |
NA | pYV0090 | putative transposase | RecName: Full=Low calcium response locus protein S; | pYV | CDS | 62839 | 267 | + | 0.434457 |
NA | YPTB3220 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 3793132 | 759 | - | 0.484848 |
NA | YPTB0261 | cytoplasmic Dnase (function similar to TatD) | RecName: Full=Tat-linked quality control protein TatD; AltName: Full=Deoxyribonuclease TatD; | chromosome | CDS | 307193 | 783 | + | 0.487867 |
NA | YPTB1783 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2134016 | 1605 | - | 0.471028 |
NA | YPTB3938 | insertion element IS1661 DNA-binding protein | SubName: Full=Insertion element IS1661 DNA-binding protein; | chromosome | CDS | 4702309 | 645 | - | 0.493023 |
NA | YPTB3898 | insertion element IS1661 DNA-binding protein | SubName: Full=Insertion element IS1661 DNA-binding protein; | chromosome | CDS | 4653852 | 645 | + | 0.485271 |
NA | pYV0046 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 32890 | 300 | + | 0.436667 |
NA | YPTB3757 | putative hydrolase | SubName: Full=Putative hydrolase; | chromosome | CDS | 4458151 | 546 | - | 0.474359 |
NA | pYV0011 | possible transposase remname | SubName: Full=Possible transposase remname; | pYV | CDS | 8586 | 189 | + | 0.492063 |
NA | pYV0039 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 28171 | 183 | - | 0.513661 |
NA | YPTB0303 | putative IS100 transposase | SubName: Full=Putative IS100 transposase; | chromosome | CDS | 367716 | 780 | - | 0.503846 |
NA | YPTB3601 | putative DNA-damage-inducible protein | SubName: Full=Putative DNA-damage-inducible protein; | chromosome | CDS | 4285383 | 204 | + | 0.485294 |
NA | YPTB2603 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3079076 | 549 | - | 0.515483 |
NA | YPTB1132 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase IS100; | chromosome | CDS | 1357127 | 1023 | + | 0.527859 |
NA | YPTB0012 | putative transposase | SubName: Full=Putative transposase; | chromosome | CDS | 17956 | 1188 | + | 0.494949 |
NA | YPTB3419 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4062370 | 603 | - | 0.527363 |
NA | YPTB3136 | putative conserved bacteriophage protein | SubName: Full=Putative conserved bacteriophage protein; EC=2.7.7.7; | chromosome | CDS | 3693012 | 702 | + | 0.405983 |
NA | YPTB0462 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 548171 | 402 | + | 0.450249 |
NA | pYV0036 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 26842 | 261 | - | 0.509579 |
NA | YPTB1875 | putative prophage integrase | SubName: Full=Putative prophage integrase; | chromosome | CDS | 2219041 | 378 | + | 0.407407 |
NA | YPTB3864 | putative phage integrase (partial) | SubName: Full=Putative phage integrase (Partial); | chromosome | CDS | 4616010 | 273 | - | 0.450549 |
NA | YPTB3233 | Probable integrase fragment. | chromosome | pseudo | 3810323 | 309 | - | 0.466019 | |
NA | pYV0009 | hyothetical protein | SubName: Full=Hyothetical protein; | pYV | CDS | 7489 | 318 | - | 0.493711 |
NA | YPTB3664 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4376472 | 1122 | - | 0.484848 |
NA | YPTB0301 | putative transposase (putative IS1617 trans-TRUNCATED-) | SubName: Full=Putative transposase; SubName: Full=Putative transposase (Putative IS1617 trans-TRUNCATED-); | chromosome | CDS | 366224 | 267 | + | 0.479401 |
NA | YPTB1878 | replicative DNA helicase (partial) | chromosome | pseudo | 2220512 | 228 | + | 0.460526 | |
ArdC | pYptb0035 | antirestriction protein | SubName: Full=Antirestriction protein; | pYptb32953 | CDS | 24036 | 981 | - | 0.474006 |
MJL12.14 | YPTB3884 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4634660 | 915 | + | 0.440437 |
RecN | YPTB1139 | DNA repair protein RecN | RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; | chromosome | CDS | 1361899 | 1680 | - | 0.463095 |
dam | YPTB1863 | putative DNA adenine methylase | SubName: Full=Putative DNA adenine methylase; EC=2.1.1.72; | chromosome | CDS | 2211330 | 819 | - | 0.460317 |
dam | YPTB3747 | DNA adenine methylase | SubName: Full=DNA adenine methylase; EC=2.1.1.72; | chromosome | CDS | 4447147 | 816 | - | 0.459559 |
dbpA | YPTB1652 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; | chromosome | CDS | 2004668 | 1383 | + | 0.501085 |
deaD | YPTB0486 | cold-shock dead-box protein A | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 573404 | 1995 | + | 0.535338 |
dinG | YPTB1245 | putative ATP-dependent helicase DinG | SubName: Full=Putative ATP-dependent helicase DinG; | chromosome | CDS | 1483903 | 2181 | + | 0.492435 |
dinP | YPTB0896 | DNA polymerase IV, devoid of proofreading, damage-inducible protein P | RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; | chromosome | CDS | 1080413 | 1059 | + | 0.495751 |
dnaA | YPTB3943 | chromosomal replication initiator protein | RecName: Full=Chromosomal replication initiator protein DnaA; | chromosome | CDS | 4709259 | 1389 | - | 0.478042 |
dnaB | YPTB0375 | replicative DNA helicase | SubName: Full=Replicative DNA helicase; EC=3.6.1.-; | chromosome | CDS | 448094 | 1407 | + | 0.523099 |
dnaE | YPTB2988 | DNA polymerase III, alpha chain | SubName: Full=DNA polymerase III, alpha chain; EC=2.7.7.7; | chromosome | CDS | 3523794 | 3516 | - | 0.483504 |
dnaG | YPTB3417 | DNA primase | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome | CDS | 4058108 | 1749 | + | 0.479703 |
dnaN | YPTB3942 | DNA polymerase III, beta subunit protein | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome | CDS | 4708154 | 1101 | - | 0.504087 |
dnaQ | YPTB2964 | DNA polymerase III, epsilon chain | SubName: Full=DNA polymerase III, epsilon chain; EC=2.7.7.7; | chromosome | CDS | 3498078 | 765 | - | 0.461438 |
dnaX | YPTB0992 | DNA polymerase III, tau and gamma subunits; DNA elongation factor III | SubName: Full=DNA polymerase III, tau and gamma subunits DNA elongation factor III; EC=2.7.7.7; | chromosome | CDS | 1191307 | 1977 | + | 0.520486 |
endA | YPTB3205 | Putative endonuclease I precursor. | SubName: Full=Putative endonuclease I; EC=3.1.21.1; Flags: Precursor; | chromosome | CDS | 3771254 | 708 | + | 0.478814 |
fiS | YPTB3577 | DNA-binding protein Fis | RecName: Full=DNA-binding protein Fis; | chromosome | CDS | 4258300 | 297 | + | 0.464646 |
flhD | YPTB2409 | regulator of flagellar biosynthesis, acts on class 2 operons | RecName: Full=Flagellar transcriptional regulator FlhD; | chromosome | CDS | 2844982 | 351 | - | 0.384615 |
gyrA | YPTB1256 | DNA gyrase subunit A | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome | CDS | 1497714 | 2694 | + | 0.49703 |
gyrB | YPTB3940 | DNA gyrase subunit B | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome | CDS | 4704462 | 2415 | - | 0.494824 |
holA | YPTB1101 | DNA polymerase III, delta subunit | SubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; | chromosome | CDS | 1318173 | 1035 | - | 0.499517 |
holB | YPTB2465 | DNA polymerase III, delta' subunit | SubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; | chromosome | CDS | 2910336 | 1023 | - | 0.523949 |
holC | YPTB0530 | DNA polymerase III, chi subunit | SubName: Full=DNA polymerase III, chi subunit; EC=2.7.7.7; | chromosome | CDS | 622329 | 450 | - | 0.571111 |
holD | YPTB0573 | DNA polymerase III, psi subunit | RecName: Full=DNA polymerase III subunit psi; | chromosome | CDS | 676033 | 438 | + | 0.534247 |
hrp | YPTB0737 | helicase, ATP-dependent | SubName: Full=Helicase, ATP-dependent; | chromosome | CDS | 882670 | 2487 | + | 0.568154 |
hrpA | YPTB2241 | ATP-dependent helicase | SubName: Full=ATP-dependent helicase; | chromosome | CDS | 2644378 | 3888 | - | 0.492027 |
hupA | YPTB0297 | DNA-binding protein HU-alpha | SubName: Full=DNA-binding protein HU-alpha; | chromosome | CDS | 355900 | 276 | + | 0.452899 |
hupB | YPTB0962 | DNA-binding protein HU-beta, NS1 (HU-1) | SubName: Full=DNA-binding protein HU-beta, NS1 (HU-1); | chromosome | CDS | 1157746 | 273 | + | 0.468864 |
ihfA | YPTB2335 | integration host factor alpha-subunit | RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; | chromosome | CDS | 2757779 | 297 | - | 0.481481 |
ihfB | YPTB1418 | integration host factor beta-subunit | RecName: Full=Integration host factor subunit beta; Short=IHF-beta; | chromosome | CDS | 1697576 | 285 | + | 0.466667 |
insA | YPTB3255 | Insertion element protein | SubName: Full=Insertion element protein; | chromosome | CDS | 3834445 | 264 | - | 0.481061 |
insA | YPTB3242 | Insertion sequence protein. | SubName: Full=Insertion sequence protein; | chromosome | CDS | 3817314 | 276 | - | 0.51087 |
insA | YPTB3236 | Insertion sequence protein | SubName: Full=Insertion sequence protein; | chromosome | CDS | 3812320 | 276 | - | 0.51087 |
int | YPTB3162 | Putative phage integrase. | SubName: Full=Putative phage integrase; | chromosome | CDS | 3718038 | 1215 | - | 0.48642 |
ligA | YPTB2711 | DNA ligase | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome | CDS | 3202933 | 2013 | - | 0.509687 |
mfd | YPTB2443 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 2887557 | 3447 | + | 0.511169 |
mutH | YPTB3037 | DNA mismatch repair protein | RecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; | chromosome | CDS | 3585642 | 687 | + | 0.526929 |
mutL | YPTB0423 | DNA mismatch repair protein | RecName: Full=DNA mismatch repair protein MutL; | chromosome | CDS | 506287 | 1908 | + | 0.504717 |
mutM | YPTB0049 | formamidopyrimidine-DNA glycosylase | RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; | chromosome | CDS | 60713 | 810 | + | 0.488889 |
mutS | YPTB0778 | methyl-directed mismatch repair, recognize exocyclic adducts of guanosine | RecName: Full=DNA mismatch repair protein MutS; | chromosome | CDS | 933577 | 2556 | - | 0.511346 |
mutT | YPTB0698 | 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP | SubName: Full=7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP; EC=3.6.1.-; | chromosome | CDS | 837692 | 387 | + | 0.447028 |
mutY | YPTB3224 | A/G-specific adenine glycosylase. | SubName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; | chromosome | CDS | 3796473 | 1116 | + | 0.502688 |
nfi | YPTB0295 | endonuclease V | RecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; | chromosome | CDS | 354371 | 705 | + | 0.523404 |
nfo | YPTB1337 | endonuclease IV | RecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; | chromosome | CDS | 1592938 | 858 | - | 0.494172 |
nth | YPTB2160 | endonuclease III | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome | CDS | 2539989 | 642 | - | 0.478193 |
nudB | YPTB2037 | putative dATP pyrophosphohydrolase | SubName: Full=Putative dATP pyrophosphohydrolase; EC=3.6.1.-; | chromosome | CDS | 2402311 | 444 | + | 0.52027 |
nudG | YPTB2093 | putative pyrophosphohydrolase | SubName: Full=Putative pyrophosphohydrolase; EC=3.6.1.-; | chromosome | CDS | 2464595 | 387 | - | 0.540052 |
ogt | YPTB2221 | putative methylated-DNA--protein-cysteine methyltransferase | RecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; | chromosome | CDS | 2622424 | 519 | + | 0.479769 |
parC | YPTB3392 | DNA topoisomerase IV subunit A | RecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; | chromosome | CDS | 4028249 | 2274 | - | 0.512313 |
parE | YPTB3395 | topoisomerase IV subunit B | RecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; | chromosome | CDS | 4032383 | 1896 | - | 0.509494 |
phrB | YPTB2913 | putative deoxyribodipyrimidine photolyase | SubName: Full=Putative deoxyribodipyrimidine photolyase; EC=4.1.99.3; Flags: Precursor; | chromosome | CDS | 3443463 | 1464 | - | 0.513661 |
polA | YPTB0018 | DNA polymerase A | SubName: Full=DNA polymerase A; EC=2.7.7.7; | chromosome | CDS | 22983 | 2799 | + | 0.474455 |
polB | YPTB0659 | DNA polymerase II and and 3'--> 5' exonuclease | RecName: Full=DNA polymerase; EC=2.7.7.7; | chromosome | CDS | 786813 | 2370 | - | 0.531224 |
priA | YPTB0101 | primosomal protein n | SubName: Full=Primosomal protein n; | chromosome | CDS | 113469 | 2199 | - | 0.529332 |
priB | YPTB0439 | primosomal replication protein n | RecName: Full=Primosomal replication protein n; | chromosome | CDS | 523841 | 321 | + | 0.476636 |
radC | YPTB0046 | putative DNA repair protein | RecName: Full=UPF0758 protein YPTB0046; | chromosome | CDS | 59284 | 669 | + | 0.45441 |
rapA | YPTB0658 | ATPase associated with RNA polymerase | RecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; | chromosome | CDS | 783446 | 2907 | - | 0.519436 |
rdgC | YPTB0913 | putative exonuclease involved in removal of stalled replication fork | RecName: Full=Recombination-associated protein RdgC; | chromosome | CDS | 1099035 | 912 | - | 0.455044 |
recA | YPTB0823 | DNA strand exchange and recombination protein with protease and nuclease activity | RecName: Full=Protein RecA; AltName: Full=Recombinase A; | chromosome | CDS | 988499 | 1071 | + | 0.463119 |
recB | YPTB3025 | exodeoxyribonuclease V beta chain | SubName: Full=Exodeoxyribonuclease V beta chain; EC=3.1.11.5; | chromosome | CDS | 3567815 | 3663 | - | 0.495495 |
recC | YPTB3027 | exodeoxyribonuclease V gamma chain | SubName: Full=Exodeoxyribonuclease V gamma chain; EC=3.1.11.5; | chromosome | CDS | 3574444 | 3372 | - | 0.473013 |
recD | YPTB3024 | exodeoxyribonuclease V alpha chain | SubName: Full=Exodeoxyribonuclease V alpha chain; EC=3.1.11.5; | chromosome | CDS | 3565860 | 1959 | - | 0.49413 |
recF | YPTB3941 | DNA metabolism protein | RecName: Full=DNA replication and repair protein RecF; | chromosome | CDS | 4706896 | 1284 | - | 0.527259 |
recG | YPTB0033 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; Flags: Precursor; | chromosome | CDS | 44941 | 2082 | - | 0.51633 |
recJ | YPTB3165 | Single-stranded-DNA-specific exonuclease | SubName: Full=Single-stranded-DNA-specific exonuclease; EC=3.1.-.-; | chromosome | CDS | 3722489 | 1734 | - | 0.528258 |
recO | YPTB2888 | DNA repair protein | RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; | chromosome | CDS | 3418602 | 726 | - | 0.511019 |
recR | YPTB0994 | putative recombination protein, gap repair | RecName: Full=Recombination protein RecR; | chromosome | CDS | 1193671 | 606 | + | 0.513201 |
rep | YPTB0163 | ATP-dependent DNA helicase Rep | SubName: Full=ATP-dependent DNA helicase Rep; EC=3.6.1.-; | chromosome | CDS | 193564 | 2022 | + | 0.488131 |
rep | pYptb0001 | plasmid replication protein | SubName: Full=Plasmid replication protein; | pYptb32953 | CDS | 202 | 987 | + | 0.35157 |
reqQ | YPTB0202 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; | chromosome | CDS | 242377 | 1833 | + | 0.525368 |
rhlB | YPTB0165 | putative DEAD-box helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 197253 | 1287 | - | 0.487956 |
rhlE | YPTB1214 | putative ATP-dependent RNA helicase rhlE | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 1447324 | 1356 | + | 0.519174 |
rnhA | YPTB2965 | ribonuclease HI | RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; | chromosome | CDS | 3498912 | 465 | + | 0.498925 |
rnhB | YPTB2989 | ribonuclease HII | RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; | chromosome | CDS | 3527439 | 597 | - | 0.504188 |
rnt | YPTB2296 | ribonuclease T | RecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; | chromosome | CDS | 2709311 | 648 | + | 0.513889 |
ruvA | YPTB2040 | Holliday junction DNA helicase | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; | chromosome | CDS | 2404526 | 681 | + | 0.502203 |
ruvB | YPTB2041 | Holliday junction DNA helicase | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; | chromosome | CDS | 2405368 | 1005 | + | 0.503483 |
ruvC | YPTB2039 | crossover junction endodeoxyribonuclease | RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; | chromosome | CDS | 2403764 | 522 | + | 0.507663 |
sbcB | YPTB1569 | exodeoxyribonuclease I | RecName: Full=Exodeoxyribonuclease I; EC=3.1.11.1; | chromosome | CDS | 1891312 | 1431 | - | 0.49406 |
sbcC | YPTB0915 | putative ATP-dependent dsDNA exonuclease | SubName: Full=Putative ATP-dependent dsDNA exonuclease; EC=3.1.15.-; | chromosome | CDS | 1101662 | 3690 | - | 0.48103 |
sbcD | YPTB0916 | ATP-dependent dsDNA exonuclease | SubName: Full=ATP-dependent dsDNA exonuclease; EC=3.1.-.-; | chromosome | CDS | 1105348 | 1245 | - | 0.48755 |
seqA | YPTB2924 | putative negative regulator of replication initiation | RecName: Full=Negative modulator of initiation of replication; | chromosome | CDS | 3458204 | 528 | - | 0.507576 |
srmB | YPTB2900 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; | chromosome | CDS | 3431229 | 1326 | + | 0.505279 |
ssb | YPTB0380 | single-strand binding protein | RecName: Full=Single-stranded DNA-binding protein; | chromosome | CDS | 456318 | 549 | + | 0.564663 |
tag | YPTB3914 | DNA-3-methyladenine glycosylase | SubName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.20; | chromosome | CDS | 4671662 | 573 | - | 0.481675 |
tnp | YPTB1554 | transposase for the IS1541 insertion element | SubName: Full=Transposase for the IS1541 insertion element; | chromosome | CDS | 1873396 | 459 | + | 0.459695 |
tnp | YPTB2010 | transposase for the IS1541 insertion element | SubName: Full=Transposase for the IS1541 insertion element; | chromosome | CDS | 2365741 | 459 | + | 0.459695 |
tnp | YPTB0621 | transposase for the IS1541 insertion element | SubName: Full=Transposase for the IS1541 insertion element; | chromosome | CDS | 737060 | 459 | + | 0.459695 |
tnp | YPTB3201 | Transposase for the IS1541 insertion element | SubName: Full=Transposase for the IS1541 insertion element; | chromosome | CDS | 3765452 | 459 | - | 0.459695 |
tnpA | YPTB1882 | putative transposase | SubName: Full=Putative transposase; | chromosome | CDS | 2222908 | 960 | - | 0.567708 |
tnpA | YPTB1892 | putative transposase | SubName: Full=Putative transposase; | chromosome | CDS | 2233095 | 960 | - | 0.570833 |
tnpA | YPTB0777 | putative transposase-like protein | SubName: Full=Putative transposase; SubName: Full=Putative transposase for IS285 insertion element; SubName: Full=Putative transposase-like protein; | chromosome | CDS | 932043 | 1209 | - | 0.497105 |
tnpA | YPTB0699 | putative transposase | SubName: Full=Putative transposase; | chromosome | CDS | 838293 | 459 | + | 0.457516 |
topA | YPTB2140 | DNA topoisomerase I | RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; | chromosome | CDS | 2515240 | 2616 | + | 0.484709 |
topB | YPTB2091 | DNA topoisomerase III | RecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; Flags: Precursor; | chromosome | CDS | 2462367 | 1929 | + | 0.494038 |
topB | pYptb0031 | DNA topoisomerase III family | SubName: Full=DNA topoisomerase III family; EC=5.99.1.2; | pYptb32953 | CDS | 21070 | 2163 | + | 0.515488 |
trp1400A | YPTB1130 | IS1400 transposase A | SubName: Full=IS1400 transposase A; | chromosome | CDS | 1356532 | 264 | - | 0.450758 |
ung | YPTB2904 | putative uracil-DNA glycosylase | RecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; | chromosome | CDS | 3435296 | 687 | + | 0.468705 |
uvrA | YPTB0379 | excinuclease ABC subunit A | RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; | chromosome | CDS | 453034 | 2844 | - | 0.518987 |
uvrB | YPTB1187 | excinuclease ABC subunit B | RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; | chromosome | CDS | 1415260 | 2016 | + | 0.498016 |
uvrC | YPTB1736 | excinuclease ABC subunit C | RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; | chromosome | CDS | 2094073 | 1833 | + | 0.448445 |
uvrD | YPTB0194 | DNA helicase II | SubName: Full=DNA helicase II; EC=3.6.1.-; | chromosome | CDS | 232598 | 2163 | + | 0.544152 |
xerC | YPTB0192 | putative integrase/recombinase | RecName: Full=Tyrosine recombinase XerC; | chromosome | CDS | 230872 | 912 | + | 0.533991 |
xerD | YPTB3167 | Probable site-specific integrase/recombinase | RecName: Full=Tyrosine recombinase XerD; | chromosome | CDS | 3724976 | 900 | - | 0.503333 |
xni | YPTB3014 | exodeoxyribonuclease IX | RecName: Full=Flap endonuclease Xni; Short=FEN; EC=3.1.-.-; | chromosome | CDS | 3553925 | 756 | + | 0.478836 |
xseA | YPTB2834 | exodeoxyribonuclease VII large subunit | RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; | chromosome | CDS | 3348401 | 1380 | + | 0.521739 |
xseB | YPTB0941 | exonuclease VII, small subunit | RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; | chromosome | CDS | 1135354 | 255 | - | 0.494118 |
xthA | YPTB2094 | exodeoxyribonuclease III | SubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; | chromosome | CDS | 2465079 | 807 | - | 0.475836 |
yfjY | YPTB3868 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4618494 | 480 | - | 0.541667 |
yjjV | YPTB0579 | putative hydrolase | SubName: Full=Putative hydrolase; EC=3.1.21.-; | chromosome | CDS | 681277 | 789 | + | 0.531052 |