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2024-05-05 15:37:26

Gene list

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COG category: Replication, recombination and repair
Organism: Yersinia pseudotuberculosis IP 32953, IP 32953

Number of genes found: 225

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pseudotuberculosis IP 32953, IP 32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pYV0009 hyothetical proteinpYV CDS7489 318 - 0.493711
NA pYV0091 putative transposasepYV CDS63141 423 + 0.453901
NA YPTB3399 ADP-ribose pyrophosphatasechromosome CDS4036328 633 - 0.494471
NA pYV0092 putative transposasepYV CDS63560 402 + 0.470149
NA YPTB3937 transposase for insertion sequence IS1661chromosome CDS4701470 786 - 0.464377
NA YPTB1794 hypothetical proteinchromosome CDS2142438 777 + 0.474903
NA YPTB3601 putative DNA-damage-inducible proteinchromosome CDS4285383 204 + 0.485294
NA YPTB0498 conserved hypothetical proteinchromosome CDS587387 288 - 0.524306
NA YPTB0964 possible DNA uptake protein ComEA related proteinchromosome CDS1160345 447 + 0.434004
NA pYV0021 putative transposasepYV CDS17484 432 - 0.571759
NA YPTB3309 Insertion element IS1661 DNA-binding protein.chromosome CDS3947088 516 + 0.478682
NA YPTB1586 putative IS100 transposasechromosome CDS1915048 780 + 0.503846
NA pYV0028 putative transposase remnantpYV CDS21960 204 - 0.480392
NA YPTB2464 putative deoxyribonucleasechromosome CDS2909512 810 - 0.495062
NA YPTB0302 putative transposasechromosome CDS366568 756 + 0.496032
NA pYV0036 hypothetical proteinpYV CDS26842 261 - 0.509579
NA YPTB3233 Probable integrase fragment.chromosome pseudo3810323 309 - 0.466019
NA YPTB0562 hypothetical proteinchromosome CDS663710 240 - 0.4125
NA pYV0008 possible transposase remnantpYV CDS6779 405 + 0.516049
NA YPTB1875 putative prophage integrasechromosome CDS2219041 378 + 0.407407
NA YPTB0462 conserved hypothetical proteinchromosome CDS548171 402 + 0.450249
NA YPTB0304 putative transposasechromosome CDS368495 1023 - 0.527859
NA YPTB1403 putative polynucleotide ATPase proteinchromosome CDS1674634 1344 + 0.526786
NA YPTB0303 putative IS100 transposasechromosome CDS367716 780 - 0.503846
NA YPTB1809 putative IS100 transposasechromosome CDS2155097 780 + 0.503846
NA YPTB1585 putative transposasechromosome CDS1914026 1023 + 0.527859
NA YPTB2792 conserved hypothetical proteinchromosome CDS3294852 708 - 0.477401
NA YPTB1286 putative bacteriophage protein GP48chromosome CDS1535004 603 + 0.547264
NA YPTB2054 putative DEAD box family helicasechromosome CDS2419413 1905 + 0.507087
NA YPTB3220 Conserved hypothetical proteinchromosome CDS3793132 759 - 0.484848
NA YPTB3136 putative conserved bacteriophage proteinchromosome CDS3693012 702 + 0.405983
NA YPTB0666 putative IS1400 transposase Bchromosome CDS796037 378 - 0.494709
NA YPTB1808 putative transposase IS100chromosome CDS2154075 1023 + 0.527859
NA YPTB0292 conserved hypothetical proteinchromosome CDS351459 783 + 0.507024
NA YPTB3875 putative transposasechromosome CDS4623749 1023 + 0.527859
NA pYV0090 putative transposasepYV CDS62839 267 + 0.434457
NA YPTB3662 putative DNA-binding proteinchromosome CDS4375447 561 - 0.467023
NA YPTB3419 Hypothetical proteinchromosome CDS4062370 603 - 0.527363
NA pYV0019 putative transposasepYV CDS15757 810 + 0.507407
NA YPTB0977 putative 6-O-methylguanine DNA methyltransferase family proteinchromosome CDS1174956 564 - 0.491135
NA YPTB1878 replicative DNA helicase (partial)chromosome pseudo2220512 228 + 0.460526
NA YPTB3938 insertion element IS1661 DNA-binding proteinchromosome CDS4702309 645 - 0.493023
NA YPTB3898 insertion element IS1661 DNA-binding proteinchromosome CDS4653852 645 + 0.485271
NA YPTB0320 conserved hypothetical proteinchromosome CDS386455 594 + 0.545455
NA YPTB0220 conserved hypothetical proteinchromosome CDS262318 663 - 0.503771
NA YPTB1874 putative bacteriophage integrasechromosome CDS2218415 333 + 0.462462
NA YPTB3664 conserved hypothetical proteinchromosome CDS4376472 1122 - 0.484848
NA YPTB3467 Putative kinase proteinchromosome CDS4127400 1500 + 0.491333
NA YPTB3876 putative IS100 transposasechromosome CDS4624771 780 + 0.503846
NA pYV0001 ypkA; putative targeted effector protein kinasepYV CDS12 2199 - 0.482947
NA pYV0093 putative transposasepYV CDS63967 180 + 0.472222
NA YPTB2603 conserved hypothetical proteinchromosome CDS3079076 549 - 0.515483
NA YPTB1783 conserved hypothetical proteinchromosome CDS2134016 1605 - 0.471028
NA YPTB3886 putative integrasechromosome CDS4636419 1215 - 0.503704
NA YPTB3864 putative phage integrase (partial)chromosome CDS4616010 273 - 0.450549
NA YPTB3899 transposase for insertion sequence IS1661chromosome CDS4654550 786 + 0.463104
NA YPTB0261 cytoplasmic Dnase (function similar to TatD)chromosome CDS307193 783 + 0.487867
NA YPTB1872 putative bacteriophage integrasechromosome CDS2217547 420 + 0.433333
NA YPTB3628 conserved hypothetical proteinchromosome CDS4321182 798 - 0.501253
NA pYV0023 possible transposase remnantpYV CDS19220 615 + 0.55122
NA YPTB3551 putative insecticial toxinchromosome CDS4218022 2493 + 0.389892
NA YPTB2429 conserved hypothetical proteinchromosome CDS2872304 447 + 0.49217
NA YPTB0038 putative DNA ligasechromosome CDS51203 1704 + 0.482394
NA YPTB1864 similar to Orf81 bacteriophage 186chromosome CDS2212145 654 - 0.415902
NA YPTB1388 conserved hypothetical proteinchromosome CDS1652290 1668 + 0.505995
NA YPTB3872 putative IS100 transposasechromosome CDS4621286 330 - 0.493939
NA YPTB0989 putative primosomal replication protein N''chromosome CDS1188732 537 - 0.433892
NA pYV0010 hypothetical proteinpYV CDS7978 459 - 0.555556
NA YPTB1300 putative DEAD box helicase family proteinchromosome CDS1547207 1758 - 0.526735
NA pYV0034 putative transposase remnantpYV CDS26051 195 - 0.497436
NA YPTB1830 bacteriophage hypothetical proteinchromosome CDS2174583 1392 + 0.469828
NA pYV0018 putative transposasepYV CDS15467 267 + 0.479401
NA YPTB1797 putative DNA methyltransferasechromosome CDS2144698 927 + 0.482201
NA YPTB1648 MutT-family proteinchromosome CDS2000654 600 - 0.501667
NA YPTB0362 conserved hypothetical proteinchromosome CDS428763 1419 + 0.525018
NA YPTB1133 putative IS100 transposasechromosome CDS1358149 780 + 0.503846
NA YPTB0704 putative transposasechromosome CDS842257 1209 + 0.497105
NA YPTB3209 Putative endonuclease involved in recombination.chromosome CDS3774692 423 + 0.529551
NA pYV0051 hypothetical proteinpYV CDS35593 324 + 0.382716
NA YPTB1778 hypotheticalchromosome CDS2130242 339 - 0.427729
NA pYV0039 putative transposasepYV CDS28171 183 - 0.513661
NA pYV0046 putative transposase remnantpYV CDS32890 300 + 0.436667
NA YPTB2757 conserved hypothetical proteinchromosome CDS3257744 624 - 0.471154
NA YPTB3494 Conserved hypothetical proteinchromosome CDS4160558 354 + 0.545198
NA YPTB1883 conserved hypothetical proteinchromosome CDS2223939 420 - 0.533333
NA pYV0011 possible transposase remnamepYV CDS8586 189 + 0.492063
NA pYV0016 tnpA; putative transposase proteinpYV CDS11386 2316 - 0.51943
NA YPTB0012 putative transposasechromosome CDS17956 1188 + 0.494949
NA YPTB1042 phage integrase (partial)chromosome pseudo1247159 300 - 0.5
NA YPTB3310 transposase for insertion sequence IS1661chromosome CDS3947657 786 + 0.464377
NA YPTB1132 putative transposasechromosome CDS1357127 1023 + 0.527859
NA YPTB0186 putative transposase for IS285 insertion elementchromosome CDS225858 1209 - 0.497105
NA YPTB2510 conserved hypothetical proteinchromosome CDS2963088 987 - 0.478217
NA pYV0017 putative resolvasepYV CDS13865 552 + 0.46558
NA YPTB3129 Possible phage integrase/recombinasechromosome CDS3688397 984 - 0.443089
NA YPTB3757 putative hydrolasechromosome CDS4458151 546 - 0.474359
NA YPTB3343 Conserved hypothetical proteinchromosome CDS3974595 426 + 0.481221
NA YPTB0301 putative transposase (putative IS1617 trans-TRUNCATED-)chromosome CDS366224 267 + 0.479401
NA YPTB1458 putative DNA helicase IVchromosome CDS1752542 2055 + 0.483212
NA YPTB2096 putative transposasechromosome CDS2467797 1209 + 0.497105
NA YPTB3311 Putative transposasechromosome CDS3949116 1209 + 0.497105
NA pYV0003 putative transposase remnantpYV CDS2919 321 - 0.510903
NA YPTB1905 putative transposase (IS285)chromosome CDS2239737 339 + 0.471976
NA pYV0095 putative transposasepYV CDS66154 537 + 0.489758
NA YPTB1776 putative integrasechromosome CDS2128303 1023 - 0.437928
NA YPTB1708 putative DNA-3-methyladenine glycosidasechromosome CDS2060514 612 - 0.49183
NA YPTB0068 bifunctional regulatory protein/DNA repair proteinchromosome CDS78736 1065 + 0.522066
NA YPTB3422 conserved hypothetical proteinchromosome CDS4063950 1377 - 0.488017
NA YPTB2480 (M29945) ORF 2; putative [Yersinia enterocolitica]chromosome CDS2926777 117 - 0.444444
NA YPTB1891 weak similarity to Vibrio transposasechromosome CDS2232455 303 - 0.458746
NA YPTB3036 probable (di)nucleoside polyphosphate hydrolasechromosome CDS3584418 528 - 0.479167
NA pYV0022 putative transposasepYV CDS17915 1173 - 0.544757
NA pYV0035 hypothetical proteinpYV CDS26357 459 - 0.551198
NA YPTB1774 putative integrasechromosome CDS2125870 1056 + 0.464015
ArdC pYptb0035 antirestriction proteinpYptb32953 CDS24036 981 - 0.474006
MJL12.14 YPTB3884 conserved hypothetical proteinchromosome CDS4634660 915 + 0.440437
RecN YPTB1139 DNA repair protein RecNchromosome CDS1361899 1680 - 0.463095
dam YPTB1863 putative DNA adenine methylasechromosome CDS2211330 819 - 0.460317
dam YPTB3747 DNA adenine methylasechromosome CDS4447147 816 - 0.459559
dbpA YPTB1652 ATP-dependent RNA helicasechromosome CDS2004668 1383 + 0.501085
deaD YPTB0486 cold-shock dead-box protein Achromosome CDS573404 1995 + 0.535338
dinG YPTB1245 putative ATP-dependent helicase DinGchromosome CDS1483903 2181 + 0.492435
dinP YPTB0896 DNA polymerase IV, devoid of proofreading, damage-inducible protein Pchromosome CDS1080413 1059 + 0.495751
dnaA YPTB3943 chromosomal replication initiator proteinchromosome CDS4709259 1389 - 0.478042
dnaB YPTB0375 replicative DNA helicasechromosome CDS448094 1407 + 0.523099
dnaE YPTB2988 DNA polymerase III, alpha chainchromosome CDS3523794 3516 - 0.483504
dnaG YPTB3417 DNA primasechromosome CDS4058108 1749 + 0.479703
dnaN YPTB3942 DNA polymerase III, beta subunit proteinchromosome CDS4708154 1101 - 0.504087
dnaQ YPTB2964 DNA polymerase III, epsilon chainchromosome CDS3498078 765 - 0.461438
dnaX YPTB0992 DNA polymerase III, tau and gamma subunits; DNA elongation factor IIIchromosome CDS1191307 1977 + 0.520486
endA YPTB3205 Putative endonuclease I precursor.chromosome CDS3771254 708 + 0.478814
fiS YPTB3577 DNA-binding protein Fischromosome CDS4258300 297 + 0.464646
flhD YPTB2409 regulator of flagellar biosynthesis, acts on class 2 operonschromosome CDS2844982 351 - 0.384615
gyrA YPTB1256 DNA gyrase subunit Achromosome CDS1497714 2694 + 0.49703
gyrB YPTB3940 DNA gyrase subunit Bchromosome CDS4704462 2415 - 0.494824
holA YPTB1101 DNA polymerase III, delta subunitchromosome CDS1318173 1035 - 0.499517
holB YPTB2465 DNA polymerase III, delta' subunitchromosome CDS2910336 1023 - 0.523949
holC YPTB0530 DNA polymerase III, chi subunitchromosome CDS622329 450 - 0.571111
holD YPTB0573 DNA polymerase III, psi subunitchromosome CDS676033 438 + 0.534247
hrp YPTB0737 helicase, ATP-dependentchromosome CDS882670 2487 + 0.568154
hrpA YPTB2241 ATP-dependent helicasechromosome CDS2644378 3888 - 0.492027
hupA YPTB0297 DNA-binding protein HU-alphachromosome CDS355900 276 + 0.452899
hupB YPTB0962 DNA-binding protein HU-beta, NS1 (HU-1)chromosome CDS1157746 273 + 0.468864
ihfA YPTB2335 integration host factor alpha-subunitchromosome CDS2757779 297 - 0.481481
ihfB YPTB1418 integration host factor beta-subunitchromosome CDS1697576 285 + 0.466667
insA YPTB3236 Insertion sequence proteinchromosome CDS3812320 276 - 0.51087
insA YPTB3255 Insertion element proteinchromosome CDS3834445 264 - 0.481061
insA YPTB3242 Insertion sequence protein.chromosome CDS3817314 276 - 0.51087
int YPTB3162 Putative phage integrase.chromosome CDS3718038 1215 - 0.48642
ligA YPTB2711 DNA ligasechromosome CDS3202933 2013 - 0.509687
mfd YPTB2443 transcription-repair coupling factorchromosome CDS2887557 3447 + 0.511169
mutH YPTB3037 DNA mismatch repair proteinchromosome CDS3585642 687 + 0.526929
mutL YPTB0423 DNA mismatch repair proteinchromosome CDS506287 1908 + 0.504717
mutM YPTB0049 formamidopyrimidine-DNA glycosylasechromosome CDS60713 810 + 0.488889
mutS YPTB0778 methyl-directed mismatch repair, recognize exocyclic adducts of guanosinechromosome CDS933577 2556 - 0.511346
mutT YPTB0698 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTPchromosome CDS837692 387 + 0.447028
mutY YPTB3224 A/G-specific adenine glycosylase.chromosome CDS3796473 1116 + 0.502688
nfi YPTB0295 endonuclease Vchromosome CDS354371 705 + 0.523404
nfo YPTB1337 endonuclease IVchromosome CDS1592938 858 - 0.494172
nth YPTB2160 endonuclease IIIchromosome CDS2539989 642 - 0.478193
nudB YPTB2037 putative dATP pyrophosphohydrolasechromosome CDS2402311 444 + 0.52027
nudG YPTB2093 putative pyrophosphohydrolasechromosome CDS2464595 387 - 0.540052
ogt YPTB2221 putative methylated-DNA--protein-cysteine methyltransferasechromosome CDS2622424 519 + 0.479769
parC YPTB3392 DNA topoisomerase IV subunit Achromosome CDS4028249 2274 - 0.512313
parE YPTB3395 topoisomerase IV subunit Bchromosome CDS4032383 1896 - 0.509494
phrB YPTB2913 putative deoxyribodipyrimidine photolyasechromosome CDS3443463 1464 - 0.513661
polA YPTB0018 DNA polymerase Achromosome CDS22983 2799 + 0.474455
polB YPTB0659 DNA polymerase II and and 3'--> 5' exonucleasechromosome CDS786813 2370 - 0.531224
priA YPTB0101 primosomal protein nchromosome CDS113469 2199 - 0.529332
priB YPTB0439 primosomal replication protein nchromosome CDS523841 321 + 0.476636
radC YPTB0046 putative DNA repair proteinchromosome CDS59284 669 + 0.45441
rapA YPTB0658 ATPase associated with RNA polymerasechromosome CDS783446 2907 - 0.519436
rdgC YPTB0913 putative exonuclease involved in removal of stalled replication forkchromosome CDS1099035 912 - 0.455044
recA YPTB0823 DNA strand exchange and recombination protein with protease and nuclease activitychromosome CDS988499 1071 + 0.463119
recB YPTB3025 exodeoxyribonuclease V beta chainchromosome CDS3567815 3663 - 0.495495
recC YPTB3027 exodeoxyribonuclease V gamma chainchromosome CDS3574444 3372 - 0.473013
recD YPTB3024 exodeoxyribonuclease V alpha chainchromosome CDS3565860 1959 - 0.49413
recF YPTB3941 DNA metabolism proteinchromosome CDS4706896 1284 - 0.527259
recG YPTB0033 ATP-dependent DNA helicasechromosome CDS44941 2082 - 0.51633
recJ YPTB3165 Single-stranded-DNA-specific exonucleasechromosome CDS3722489 1734 - 0.528258
recO YPTB2888 DNA repair proteinchromosome CDS3418602 726 - 0.511019
recR YPTB0994 putative recombination protein, gap repairchromosome CDS1193671 606 + 0.513201
rep pYptb0001 plasmid replication proteinpYptb32953 CDS202 987 + 0.35157
rep YPTB0163 ATP-dependent DNA helicase Repchromosome CDS193564 2022 + 0.488131
reqQ YPTB0202 ATP-dependent DNA helicasechromosome CDS242377 1833 + 0.525368
rhlB YPTB0165 putative DEAD-box helicasechromosome CDS197253 1287 - 0.487956
rhlE YPTB1214 putative ATP-dependent RNA helicase rhlEchromosome CDS1447324 1356 + 0.519174
rnhA YPTB2965 ribonuclease HIchromosome CDS3498912 465 + 0.498925
rnhB YPTB2989 ribonuclease HIIchromosome CDS3527439 597 - 0.504188
rnt YPTB2296 ribonuclease Tchromosome CDS2709311 648 + 0.513889
ruvA YPTB2040 Holliday junction DNA helicasechromosome CDS2404526 681 + 0.502203
ruvB YPTB2041 Holliday junction DNA helicasechromosome CDS2405368 1005 + 0.503483
ruvC YPTB2039 crossover junction endodeoxyribonucleasechromosome CDS2403764 522 + 0.507663
sbcB YPTB1569 exodeoxyribonuclease Ichromosome CDS1891312 1431 - 0.49406
sbcC YPTB0915 putative ATP-dependent dsDNA exonucleasechromosome CDS1101662 3690 - 0.48103
sbcD YPTB0916 ATP-dependent dsDNA exonucleasechromosome CDS1105348 1245 - 0.48755
seqA YPTB2924 putative negative regulator of replication initiationchromosome CDS3458204 528 - 0.507576
srmB YPTB2900 ATP-dependent RNA helicasechromosome CDS3431229 1326 + 0.505279
ssb YPTB0380 single-strand binding proteinchromosome CDS456318 549 + 0.564663
tag YPTB3914 DNA-3-methyladenine glycosylasechromosome CDS4671662 573 - 0.481675
tnp YPTB3201 Transposase for the IS1541 insertion elementchromosome CDS3765452 459 - 0.459695
tnp YPTB0621 transposase for the IS1541 insertion elementchromosome CDS737060 459 + 0.459695
tnp YPTB1554 transposase for the IS1541 insertion elementchromosome CDS1873396 459 + 0.459695
tnp YPTB2010 transposase for the IS1541 insertion elementchromosome CDS2365741 459 + 0.459695
tnpA YPTB0777 putative transposase-like proteinchromosome CDS932043 1209 - 0.497105
tnpA YPTB0699 putative transposasechromosome CDS838293 459 + 0.457516
tnpA YPTB1882 putative transposasechromosome CDS2222908 960 - 0.567708
tnpA YPTB1892 putative transposasechromosome CDS2233095 960 - 0.570833
topA YPTB2140 DNA topoisomerase Ichromosome CDS2515240 2616 + 0.484709
topB pYptb0031 DNA topoisomerase III familypYptb32953 CDS21070 2163 + 0.515488
topB YPTB2091 DNA topoisomerase IIIchromosome CDS2462367 1929 + 0.494038
trp1400A YPTB1130 IS1400 transposase Achromosome CDS1356532 264 - 0.450758
ung YPTB2904 putative uracil-DNA glycosylasechromosome CDS3435296 687 + 0.468705
uvrA YPTB0379 excinuclease ABC subunit Achromosome CDS453034 2844 - 0.518987
uvrB YPTB1187 excinuclease ABC subunit Bchromosome CDS1415260 2016 + 0.498016
uvrC YPTB1736 excinuclease ABC subunit Cchromosome CDS2094073 1833 + 0.448445
uvrD YPTB0194 DNA helicase IIchromosome CDS232598 2163 + 0.544152
xerC YPTB0192 putative integrase/recombinasechromosome CDS230872 912 + 0.533991
xerD YPTB3167 Probable site-specific integrase/recombinasechromosome CDS3724976 900 - 0.503333
xni YPTB3014 exodeoxyribonuclease IXchromosome CDS3553925 756 + 0.478836
xseA YPTB2834 exodeoxyribonuclease VII large subunitchromosome CDS3348401 1380 + 0.521739
xseB YPTB0941 exonuclease VII, small subunitchromosome CDS1135354 255 - 0.494118
xthA YPTB2094 exodeoxyribonuclease IIIchromosome CDS2465079 807 - 0.475836
yfjY YPTB3868 conserved hypothetical proteinchromosome CDS4618494 480 - 0.541667
yjjV YPTB0579 putative hydrolasechromosome CDS681277 789 + 0.531052