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2024-05-21 13:29:45

Gene list

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COG category: Replication, recombination and repair
Organism: Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529

Number of genes found: 140

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Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Bd3793 putative 3-methyladenine DNA glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS3665322 579 + 0.474957
NA Bd0605 putative transposaseSubName: Full=Putative transposase; chromosome CDS563136 657 - 0.438356
NA Bd3893 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS3760751 3519 + 0.512646
NA Bd3498 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS3408668 417 - 0.446043
NA Bd0252 conserved hypothetical proteinRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS239670 513 - 0.528265
NA Bd0639 hypothetical proteinSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS595003 687 + 0.475983
NA Bd2362 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS2263457 1182 - 0.510152
NA Bd2271 SubName: Full=AJ428902 Bdellovibrio bacteriovorus gene for putative recombinase; chromosome CDS2170236 2091 - 0.527021
NA Bd2678 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS2597232 1104 - 0.450181
NA Bd1631 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1568135 738 + 0.47832
NA Bd3546 RRM3/PIF1 helicase homologRecName: Full=ATP-dependent DNA helicase pif1; EC=3.6.4.12; chromosome CDS3448836 1320 - 0.523485
NA Bd2755 putative ATP/GTP-binding proteinSubName: Full=Putative ATP/GTP-binding protein; chromosome CDS2675689 540 + 0.5
NA Bd0668 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS618235 1491 - 0.520456
NA Bd0253 DNA methylation and regulatory protein AdaSubName: Full=DNA methylation and regulatory protein Ada; EC=2.1.1.63; chromosome CDS240179 1440 - 0.515972
NA Bd2115 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS2025318 294 - 0.469388
NA Bd0255 similar to ATP dependent helicaseSubName: Full=Similar to ATP dependent helicase; chromosome CDS243257 2379 - 0.517444
NA Bd0172 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS159377 702 - 0.5
NA Bd1464 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS1385281 1011 + 0.521266
NA Bd2726 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS2646640 2775 - 0.500541
NA Bd1013 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS961827 600 - 0.476667
NA Bd2100 hypthetical proteinSubName: Full=Hypthetical protein; chromosome CDS2012500 1677 - 0.466905
NA Bd0414 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS390547 741 - 0.510121
NA Bd3139 probable exonuclease RexASubName: Full=Probable exonuclease RexA; chromosome CDS3047683 3024 - 0.527778
NA Bd2274 spb1 gene forserine protease (AJ428902) related proteinSubName: Full=Spb1 gene forserine protease (AJ428902) related protein; Flags: Precursor; chromosome CDS2173421 894 + 0.513423
NA Bd1666 putative helicase/SNF2 family domain proteinSubName: Full=Putative helicase/SNF2 family domain protein; chromosome CDS1597655 3993 + 0.5144
NA Bd0467 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS437652 627 + 0.496013
NA Bd3382 putative DNA-binding protein HU-betaSubName: Full=Putative DNA-binding protein HU-beta; chromosome CDS3291022 273 + 0.417582
NA Bd1320 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS1247485 441 + 0.496599
NA Bd3500 Uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS3409570 789 - 0.471483
NA Bd3304 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS3220194 2154 - 0.542711
NA Bd0711 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS669934 294 - 0.431973
NA Bd0920 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS871921 477 - 0.498952
NA Bd3524 Exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS3427050 858 - 0.463869
NA Bd0946 putative N6-adenine-specific DNA methylaseSubName: Full=Putative N6-adenine-specific DNA methylase; chromosome CDS894600 1125 + 0.489778
NA Bd0820 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS770307 1161 + 0.486649
NA Bd3551 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3453737 1374 + 0.498544
NA Bd2360 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS2261164 1188 + 0.516835
NA Bd3199 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS3122776 405 - 0.51358
NA Bd1343 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1272067 813 - 0.493235
NA Bd3507 putative secreted nucleaseSubName: Full=Putative secreted nuclease; Flags: Precursor; chromosome CDS3414695 870 + 0.513793
NA Bd3140 putative exonucleaseSubName: Full=Putative exonuclease; chromosome CDS3050754 2724 - 0.521292
NA Bd0003 DNA repair and genetic recombination proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS2755 1125 + 0.470222
NA Bd0746 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS707614 486 + 0.481481
NA Bd0682 putative yir2 proteinSubName: Full=Putative yir2 protein; Flags: Precursor; chromosome CDS631525 984 + 0.465447
NA Bd2680 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS2599160 4719 - 0.378682
NA Bd1244 SubName: Full=COG2356 Endonuclease I; EC=3.1.-.-; Flags: Precursor; chromosome CDS1179202 894 + 0.497763
NA Bd1953 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1866215 726 - 0.447658
NA Bd3907 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS3775248 540 + 0.494444
NA Bd1809 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1736934 1089 + 0.48393
NA Bd0869 ATPase, AAA familySubName: Full=ATPase, AAA family; chromosome CDS816549 1350 + 0.522222
NA Bd0622 SubName: Full=Putative uncharacterized protein; chromosome CDS580688 600 + 0.503333
NA Bd3065 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS2975623 561 - 0.513369
NA Bd0591 Endo III-related endonucleaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS548727 666 + 0.518018
NA Bd0654 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS605794 636 - 0.517296
NA Bd0652 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS604420 996 + 0.5
NA Bd1934 putative endonucleaseSubName: Full=Putative endonuclease; Flags: Precursor; chromosome CDS1846065 648 - 0.490741
NA Bd1370 RNA helicaseSubName: Full=RNA helicase; chromosome CDS1294194 1383 + 0.53073
NA Bd0004 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS3966 2421 + 0.48038
NA Bd2400 putative cell surface proteinSubName: Full=Putative cell surface protein; Flags: Precursor; chromosome CDS2304538 2742 - 0.502188
NA Bd2355 Hydrolase, TatD familySubName: Full=Hydrolase, TatD family; EC=3.1.21.-; chromosome CDS2256471 810 - 0.535802
NA Bd0697 putative actin-binding proteinSubName: Full=Putative actin-binding protein; chromosome CDS649125 513 - 0.385965
NA Bd0385 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; chromosome CDS361970 1263 - 0.535234
NA Bd2306 hypothetical protein predicted by Glimmer/CriticaSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS2201793 498 - 0.508032
NA Bd1431 putative nucleaseSubName: Full=Putative nuclease; Flags: Precursor; chromosome CDS1349170 501 - 0.53493
NA Bd1342 putative DNA alkylation repair enzymeSubName: Full=Putative DNA alkylation repair enzyme; chromosome CDS1270906 1134 - 0.518519
dbpA Bd1394 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS1321014 1518 - 0.532279
deaD Bd1412 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS1333210 1971 - 0.541857
dinP Bd0349 DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS330910 1071 + 0.526611
dnaA Bd0001 chromosomal replication initiator protein dnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1 1416 + 0.484463
dnaB Bd0038 SubName: Full=DnaB protein; EC=3.6.1.-; chromosome CDS33558 1416 - 0.510593
dnaE Bd2078 SubName: Full=DnaE protein; EC=2.7.7.7; chromosome CDS1985110 3540 - 0.511299
dnaE Bd0384 DNA polymerase III, alpha chainRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS358792 3186 - 0.530446
dnaG Bd0241 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS226127 1869 + 0.514714
dnaN Bd0002 DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1649 1107 + 0.431798
dnaX Bd3731 DNA polymerase III gamma and tau subunitsSubName: Full=DNA polymerase III gamma and tau subunits; EC=2.7.7.7; chromosome CDS3607103 1866 + 0.521436
endA Bd0934 putative secreted nucleaseSubName: Full=Putative secreted nuclease; EC=3.1.-.-; Flags: Precursor; chromosome CDS887136 744 - 0.474462
exoA Bd3670 exodeoxyribonucleaseSubName: Full=Exodeoxyribonuclease; EC=3.1.11.2; chromosome CDS3556108 774 + 0.511628
fpg Bd2176 RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS2078010 816 - 0.536765
gyrA Bd0005 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS6410 2484 + 0.507246
himA Bd1639 integration host factor, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1575719 372 + 0.451613
holB Bd1041 DNA polymerase III delta' subunitSubName: Full=DNA polymerase III delta subunit; EC=2.7.7.7; chromosome CDS985644 945 + 0.522751
hrpB Bd3108 helicaseSubName: Full=Helicase; chromosome CDS3015413 2544 + 0.53184
hua Bd2104 DNA-binding protein HU-alpha (HU-2)SubName: Full=DNA-binding protein HU-alpha (HU-2); chromosome CDS2016603 273 + 0.490842
lig Bd0057 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS50579 2055 - 0.531873
lig Bd2252 SubName: Full=Lig protein; chromosome CDS2148270 2223 - 0.527665
mutL Bd1564 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1489758 1881 + 0.53429
mutS Bd1954 DNA mismatch repair proteinSubName: Full=DNA mismatch repair protein; chromosome CDS1867041 2523 + 0.512485
mutS Bd2912 MutS-like mismatch repair protein, ATPasesSubName: Full=MutS-like mismatch repair protein, ATPases; chromosome CDS2822186 1833 - 0.509002
mutS Bd1277 DNA mismatch repair proteinRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS1208644 2331 - 0.531103
mutT Bd2220 Nudix (MutT) family hydrolase/pyrophosphataseSubName: Full=Nudix (MutT) family hydrolase/pyrophosphatase; EC=3.6.1.-; chromosome CDS2116281 420 - 0.566667
mutT Bd0714 probable pyrophosphohydrolaseSubName: Full=Probable pyrophosphohydrolase; EC=3.6.1.-; chromosome CDS672670 462 - 0.504329
mutY Bd3437 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS3349111 1002 + 0.522954
nudF Bd3179 ADP-ribose pyrophosphataseSubName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; chromosome CDS3099816 549 - 0.484517
ogt Bd0389 6-O-methylguanine-DNA methyltransferaseSubName: Full=6-O-methylguanine-DNA methyltransferase; EC=2.1.1.63; chromosome CDS365668 492 - 0.5
ompA Bd2616 probable outer membrane proteinSubName: Full=Probable outer membrane protein; Flags: Precursor; chromosome CDS2533519 1323 + 0.528345
pcrA Bd1321 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS1247948 2019 + 0.518574
pcrA Bd3339 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS3249944 2289 + 0.520751
phr Bd2206 deoxyribodipyrimidine photolyase-class ISubName: Full=Deoxyribodipyrimidine photolyase-class I; EC=4.1.99.3; chromosome CDS2104114 1308 - 0.506116
pkn Bd3148 SubName: Full=Pkn protein; EC=2.7.1.37; chromosome CDS3060220 1962 + 0.530071
polA Bd0802 DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS750574 2592 + 0.518519
polC Bd3251 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS3168925 831 - 0.519856
polC Bd3834 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS3701454 654 + 0.506116
priA Bd3775 similar to primosomal replication factor YSubName: Full=Similar to primosomal replication factor Y; chromosome CDS3648976 2046 + 0.526882
radC Bd0218 putative DNA repair proteinSubName: Full=Putative DNA repair protein; chromosome CDS206317 513 - 0.497076
recA Bd0386 recA proteinSubName: Full=RecA protein; EC=3.1.-.-; chromosome CDS363240 723 - 0.488243
recA Bd0512 RecA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS479471 1134 + 0.474427
recG Bd2324 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS2223247 2106 - 0.517094
recJ Bd2232 single-strand DNA-specific exonucleaseSubName: Full=Single-strand DNA-specific exonuclease; EC=3.1.-.-; chromosome CDS2129645 1728 - 0.510417
recN Bd3173 DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS3089463 1701 + 0.5097
recQ Bd3210 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome CDS3133107 1593 - 0.52354
recQ Bd0988 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome CDS932638 1437 + 0.527488
recR Bd3733 DNA repair and genetic recombination proteinRecName: Full=Recombination protein RecR; chromosome CDS3609364 615 + 0.520325
rhlB Bd3461 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS3370568 1650 - 0.526667
rhlE Bd0235 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS220904 1518 - 0.529644
rhlE Bd0324 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS308387 1239 + 0.488297
rhlE Bd0316 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS302718 1422 + 0.538678
rnhA Bd2138 SubName: Full=RnhA protein; EC=3.1.26.4; chromosome CDS2044076 462 - 0.532468
rnhA Bd3131 ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS3036447 792 - 0.537879
rnhB Bd2116 ribonuclease HII (RNase HII)RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS2025670 666 - 0.493994
ruvA Bd2488 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS2391710 591 - 0.516074
ruvB Bd2487 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS2390724 990 - 0.531313
ruvC Bd2489 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS2392297 507 - 0.5286
smf Bd2472 putative DNA processing protein (Smf family)SubName: Full=Putative DNA processing protein (Smf family); chromosome CDS2375103 948 - 0.535865
ssb Bd1582 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1511895 432 - 0.49537
tatD Bd1042 TatD related DNaseSubName: Full=TatD related DNase; EC=3.1.21.-; chromosome CDS986630 771 + 0.50454
top6A Bd2864 SubName: Full=Top6A protein; EC=5.99.1.3; chromosome CDS2770655 1164 - 0.478522
top6B Bd2865 type II DNA topoisomerase VI, subunit BRecName: Full=Type 2 DNA topoisomerase 6 subunit B; EC=5.99.1.3; AltName: Full=Type II DNA topoisomerase VI subunit B; chromosome CDS2771818 1770 - 0.491525
topA Bd0964 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS909726 2730 + 0.521245
uvrA Bd2442 excinuclease ABC subunit ASubName: Full=Excinuclease ABC subunit A; chromosome CDS2352043 2601 - 0.527489
uvrA Bd0159 excinuclease ABC subunit ASubName: Full=Excinuclease ABC subunit A; chromosome CDS145762 2949 - 0.501526
uvrB Bd2312 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS2207756 2238 - 0.514298
uvrC Bd2311 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS2205877 1893 - 0.499736
uvrC Bd0254 excinuclease ABC subunit CSubName: Full=Excinuclease ABC subunit C; EC=2.7.7.7; chromosome CDS241701 1536 - 0.511719
xer Bd2025 probable bacteriophage integrase or recombinaseSubName: Full=Probable bacteriophage integrase or recombinase; chromosome CDS1933942 534 - 0.475655
xerD Bd2300 integrase/recombinase XerDRecName: Full=Tyrosine recombinase XerC; chromosome CDS2195550 879 - 0.50967
xerD Bd3064 site-specific recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS2974735 885 + 0.503955
xseA Bd0197 exodeoxyribonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; chromosome CDS183449 1407 + 0.522388
xseB Bd0198 exodeoxyribonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS184857 225 + 0.475556
ybaZ Bd3645 putative methylated-DNA methyltransferaseSubName: Full=Putative methylated-DNA methyltransferase; chromosome CDS3537512 360 - 0.516667
yejH Bd3681 putative ATP-dependent helicaseSubName: Full=Putative ATP-dependent helicase; chromosome CDS3562205 1743 + 0.501434