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2024-05-01 01:37:42

Gene list

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COG category: Replication, recombination and repair
Organism: Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529

Number of genes found: 140

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Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Bd3139 probable exonuclease RexAchromosome CDS3047683 3024 - 0.527778
NA Bd1013 hypothetical protein predicted by Glimmer/Criticachromosome CDS961827 600 - 0.476667
NA Bd1809 conserved hypothetical proteinchromosome CDS1736934 1089 + 0.48393
NA Bd2680 hypothetical protein predicted by Glimmer/Criticachromosome CDS2599160 4719 - 0.378682
NA Bd0639 hypothetical proteinchromosome CDS595003 687 + 0.475983
NA Bd0820 hypothetical protein predicted by Glimmer/Criticachromosome CDS770307 1161 + 0.486649
NA Bd2678 hypothetical protein predicted by Glimmer/Criticachromosome CDS2597232 1104 - 0.450181
NA Bd0591 Endo III-related endonucleasechromosome CDS548727 666 + 0.518018
NA Bd3140 putative exonucleasechromosome CDS3050754 2724 - 0.521292
NA Bd3507 putative secreted nucleasechromosome CDS3414695 870 + 0.513793
NA Bd3065 hypothetical protein predicted by Glimmer/Criticachromosome CDS2975623 561 - 0.513369
NA Bd0746 hypothetical protein predicted by Glimmer/Criticachromosome CDS707614 486 + 0.481481
NA Bd1244 chromosome CDS1179202 894 + 0.497763
NA Bd1431 putative nucleasechromosome CDS1349170 501 - 0.53493
NA Bd0252 conserved hypothetical proteinchromosome CDS239670 513 - 0.528265
NA Bd0668 conserved hypothetical proteinchromosome CDS618235 1491 - 0.520456
NA Bd2274 spb1 gene forserine protease (AJ428902) related proteinchromosome CDS2173421 894 + 0.513423
NA Bd0414 hypothetical protein predicted by Glimmer/Criticachromosome CDS390547 741 - 0.510121
NA Bd0004 DNA gyrase subunit Bchromosome CDS3966 2421 + 0.48038
NA Bd3304 hypothetical protein predicted by Glimmer/Criticachromosome CDS3220194 2154 - 0.542711
NA Bd1320 hypothetical protein predicted by Glimmer/Criticachromosome CDS1247485 441 + 0.496599
NA Bd0711 DNA-binding protein HUchromosome CDS669934 294 - 0.431973
NA Bd3524 Exodeoxyribonuclease IIIchromosome CDS3427050 858 - 0.463869
NA Bd0003 DNA repair and genetic recombination proteinchromosome CDS2755 1125 + 0.470222
NA Bd3498 conserved hypothetical proteinchromosome CDS3408668 417 - 0.446043
NA Bd2100 hypthetical proteinchromosome CDS2012500 1677 - 0.466905
NA Bd3907 hypothetical protein predicted by Glimmer/Criticachromosome CDS3775248 540 + 0.494444
NA Bd0697 putative actin-binding proteinchromosome CDS649125 513 - 0.385965
NA Bd3551 conserved hypothetical proteinchromosome CDS3453737 1374 + 0.498544
NA Bd0253 DNA methylation and regulatory protein Adachromosome CDS240179 1440 - 0.515972
NA Bd3500 Uracil-DNA glycosylasechromosome CDS3409570 789 - 0.471483
NA Bd2360 conserved hypothetical proteinchromosome CDS2261164 1188 + 0.516835
NA Bd1464 DNA polymerase III, delta subunitchromosome CDS1385281 1011 + 0.521266
NA Bd1666 putative helicase/SNF2 family domain proteinchromosome CDS1597655 3993 + 0.5144
NA Bd2271 chromosome CDS2170236 2091 - 0.527021
NA Bd1934 putative endonucleasechromosome CDS1846065 648 - 0.490741
NA Bd2362 conserved hypothetical proteinchromosome CDS2263457 1182 - 0.510152
NA Bd3546 RRM3/PIF1 helicase homologchromosome CDS3448836 1320 - 0.523485
NA Bd3382 putative DNA-binding protein HU-betachromosome CDS3291022 273 + 0.417582
NA Bd1370 RNA helicasechromosome CDS1294194 1383 + 0.53073
NA Bd0605 putative transposasechromosome CDS563136 657 - 0.438356
NA Bd2755 putative ATP/GTP-binding proteinchromosome CDS2675689 540 + 0.5
NA Bd0654 MutT/nudix family proteinchromosome CDS605794 636 - 0.517296
NA Bd1342 putative DNA alkylation repair enzymechromosome CDS1270906 1134 - 0.518519
NA Bd1631 conserved hypothetical proteinchromosome CDS1568135 738 + 0.47832
NA Bd0467 hypothetical protein predicted by Glimmer/Criticachromosome CDS437652 627 + 0.496013
NA Bd0920 conserved hypothetical proteinchromosome CDS871921 477 - 0.498952
NA Bd3893 transcription-repair coupling factorchromosome CDS3760751 3519 + 0.512646
NA Bd2726 hypothetical protein predicted by Glimmer/Criticachromosome CDS2646640 2775 - 0.500541
NA Bd2115 hypothetical protein predicted by Glimmer/Criticachromosome CDS2025318 294 - 0.469388
NA Bd2355 Hydrolase, TatD familychromosome CDS2256471 810 - 0.535802
NA Bd2306 hypothetical protein predicted by Glimmer/Criticachromosome CDS2201793 498 - 0.508032
NA Bd2400 putative cell surface proteinchromosome CDS2304538 2742 - 0.502188
NA Bd3793 putative 3-methyladenine DNA glycosylasechromosome CDS3665322 579 + 0.474957
NA Bd0172 hypothetical protein predicted by Glimmer/Criticachromosome CDS159377 702 - 0.5
NA Bd0385 hypothetical protein predicted by Glimmer/Criticachromosome CDS361970 1263 - 0.535234
NA Bd0869 ATPase, AAA familychromosome CDS816549 1350 + 0.522222
NA Bd1953 conserved hypothetical proteinchromosome CDS1866215 726 - 0.447658
NA Bd3199 hypothetical protein predicted by Glimmer/Criticachromosome CDS3122776 405 - 0.51358
NA Bd0652 hypothetical protein predicted by Glimmer/Criticachromosome CDS604420 996 + 0.5
NA Bd1343 conserved hypothetical proteinchromosome CDS1272067 813 - 0.493235
NA Bd0622 chromosome CDS580688 600 + 0.503333
NA Bd0682 putative yir2 proteinchromosome CDS631525 984 + 0.465447
NA Bd0946 putative N6-adenine-specific DNA methylasechromosome CDS894600 1125 + 0.489778
NA Bd0255 similar to ATP dependent helicasechromosome CDS243257 2379 - 0.517444
dbpA Bd1394 ATP-dependent RNA helicasechromosome CDS1321014 1518 - 0.532279
deaD Bd1412 ATP-dependent RNA helicasechromosome CDS1333210 1971 - 0.541857
dinP Bd0349 DNA polymerase IVchromosome CDS330910 1071 + 0.526611
dnaA Bd0001 chromosomal replication initiator protein dnaAchromosome CDS1 1416 + 0.484463
dnaB Bd0038 chromosome CDS33558 1416 - 0.510593
dnaE Bd2078 chromosome CDS1985110 3540 - 0.511299
dnaE Bd0384 DNA polymerase III, alpha chainchromosome CDS358792 3186 - 0.530446
dnaG Bd0241 DNA primasechromosome CDS226127 1869 + 0.514714
dnaN Bd0002 DNA polymerase III, beta subunitchromosome CDS1649 1107 + 0.431798
dnaX Bd3731 DNA polymerase III gamma and tau subunitschromosome CDS3607103 1866 + 0.521436
endA Bd0934 putative secreted nucleasechromosome CDS887136 744 - 0.474462
exoA Bd3670 exodeoxyribonucleasechromosome CDS3556108 774 + 0.511628
fpg Bd2176 chromosome CDS2078010 816 - 0.536765
gyrA Bd0005 DNA gyrase subunit Achromosome CDS6410 2484 + 0.507246
himA Bd1639 integration host factor, alpha subunitchromosome CDS1575719 372 + 0.451613
holB Bd1041 DNA polymerase III delta' subunitchromosome CDS985644 945 + 0.522751
hrpB Bd3108 helicasechromosome CDS3015413 2544 + 0.53184
hua Bd2104 DNA-binding protein HU-alpha (HU-2)chromosome CDS2016603 273 + 0.490842
lig Bd2252 chromosome CDS2148270 2223 - 0.527665
lig Bd0057 DNA ligasechromosome CDS50579 2055 - 0.531873
mutL Bd1564 DNA mismatch repair protein MutLchromosome CDS1489758 1881 + 0.53429
mutS Bd1954 DNA mismatch repair proteinchromosome CDS1867041 2523 + 0.512485
mutS Bd1277 DNA mismatch repair proteinchromosome CDS1208644 2331 - 0.531103
mutS Bd2912 MutS-like mismatch repair protein, ATPaseschromosome CDS2822186 1833 - 0.509002
mutT Bd0714 probable pyrophosphohydrolasechromosome CDS672670 462 - 0.504329
mutT Bd2220 Nudix (MutT) family hydrolase/pyrophosphatasechromosome CDS2116281 420 - 0.566667
mutY Bd3437 A/G-specific adenine glycosylasechromosome CDS3349111 1002 + 0.522954
nudF Bd3179 ADP-ribose pyrophosphatasechromosome CDS3099816 549 - 0.484517
ogt Bd0389 6-O-methylguanine-DNA methyltransferasechromosome CDS365668 492 - 0.5
ompA Bd2616 probable outer membrane proteinchromosome CDS2533519 1323 + 0.528345
pcrA Bd3339 ATP-dependent DNA helicasechromosome CDS3249944 2289 + 0.520751
pcrA Bd1321 ATP-dependent DNA helicasechromosome CDS1247948 2019 + 0.518574
phr Bd2206 deoxyribodipyrimidine photolyase-class Ichromosome CDS2104114 1308 - 0.506116
pkn Bd3148 chromosome CDS3060220 1962 + 0.530071
polA Bd0802 DNA polymerase Ichromosome CDS750574 2592 + 0.518519
polC Bd3834 DNA polymerase III alpha subunitchromosome CDS3701454 654 + 0.506116
polC Bd3251 DNA polymerase III alpha subunitchromosome CDS3168925 831 - 0.519856
priA Bd3775 similar to primosomal replication factor Ychromosome CDS3648976 2046 + 0.526882
radC Bd0218 putative DNA repair proteinchromosome CDS206317 513 - 0.497076
recA Bd0386 recA proteinchromosome CDS363240 723 - 0.488243
recA Bd0512 RecA proteinchromosome CDS479471 1134 + 0.474427
recG Bd2324 ATP-dependent DNA helicase RecGchromosome CDS2223247 2106 - 0.517094
recJ Bd2232 single-strand DNA-specific exonucleasechromosome CDS2129645 1728 - 0.510417
recN Bd3173 DNA repair proteinchromosome CDS3089463 1701 + 0.5097
recQ Bd3210 ATP-dependent DNA helicase RecQchromosome CDS3133107 1593 - 0.52354
recQ Bd0988 ATP-dependent DNA helicase RecQchromosome CDS932638 1437 + 0.527488
recR Bd3733 DNA repair and genetic recombination proteinchromosome CDS3609364 615 + 0.520325
rhlB Bd3461 ATP-dependent RNA helicasechromosome CDS3370568 1650 - 0.526667
rhlE Bd0316 ATP-dependent RNA helicasechromosome CDS302718 1422 + 0.538678
rhlE Bd0235 ATP-dependent RNA helicasechromosome CDS220904 1518 - 0.529644
rhlE Bd0324 putative ATP-dependent RNA helicasechromosome CDS308387 1239 + 0.488297
rnhA Bd2138 chromosome CDS2044076 462 - 0.532468
rnhA Bd3131 ribonuclease Hchromosome CDS3036447 792 - 0.537879
rnhB Bd2116 ribonuclease HII (RNase HII)chromosome CDS2025670 666 - 0.493994
ruvA Bd2488 Holliday junction DNA helicase RuvAchromosome CDS2391710 591 - 0.516074
ruvB Bd2487 Holliday junction DNA helicase RuvBchromosome CDS2390724 990 - 0.531313
ruvC Bd2489 crossover junction endodeoxyribonuclease RuvCchromosome CDS2392297 507 - 0.5286
smf Bd2472 putative DNA processing protein (Smf family)chromosome CDS2375103 948 - 0.535865
ssb Bd1582 single-strand binding proteinchromosome CDS1511895 432 - 0.49537
tatD Bd1042 TatD related DNasechromosome CDS986630 771 + 0.50454
top6A Bd2864 chromosome CDS2770655 1164 - 0.478522
top6B Bd2865 type II DNA topoisomerase VI, subunit Bchromosome CDS2771818 1770 - 0.491525
topA Bd0964 DNA topoisomerase Ichromosome CDS909726 2730 + 0.521245
uvrA Bd2442 excinuclease ABC subunit Achromosome CDS2352043 2601 - 0.527489
uvrA Bd0159 excinuclease ABC subunit Achromosome CDS145762 2949 - 0.501526
uvrB Bd2312 excinuclease ABC subunit Bchromosome CDS2207756 2238 - 0.514298
uvrC Bd0254 excinuclease ABC subunit Cchromosome CDS241701 1536 - 0.511719
uvrC Bd2311 excinuclease ABC subunit Cchromosome CDS2205877 1893 - 0.499736
xer Bd2025 probable bacteriophage integrase or recombinasechromosome CDS1933942 534 - 0.475655
xerD Bd3064 site-specific recombinasechromosome CDS2974735 885 + 0.503955
xerD Bd2300 integrase/recombinase XerDchromosome CDS2195550 879 - 0.50967
xseA Bd0197 exodeoxyribonuclease VII, large subunitchromosome CDS183449 1407 + 0.522388
xseB Bd0198 exodeoxyribonuclease VII, small subunitchromosome CDS184857 225 + 0.475556
ybaZ Bd3645 putative methylated-DNA methyltransferasechromosome CDS3537512 360 - 0.516667
yejH Bd3681 putative ATP-dependent helicasechromosome CDS3562205 1743 + 0.501434