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# Rhodopseudomonas palustris CGA009, CGA009

>RPA4269 ribonuclease H
MSEADQKPVIIHTDGACSGNPGPGGWGAILKFGDVEKELKGGEPHTTNNR
MELLAAISALEALTRPCSVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKK
PVKNVDLWQRLDAALKTHSIRWHWVKGHAGHAENERADQLARDGLTENRM
KSRVK
>RPA2211 DEAD/DEAH box helicase:Helicase, C-terminal
MTDNRFEAEAALAPLKAFQRRTVDYVFDRLYGDQDPVRQFLVADEVGLGK
TMVARGVIARTIEKLWDSTDRIDILYICSNQAIAAQNINRLNVLGRRELA
LPTRMTLIPLQVRGDQGLDANKVNFISLTPGTTFDLRSTTGVTQERALLL
RMLEDRVSRPRGLHNLLQVSAGVDGWNTAVRELSLDGVDQRIIDRFRRDV
EKDAELFTELEAVCDLFPRRREAYPYELNQRRNALVGRLRGKLSHACIDA
LKPDLIIMDEFQRFRDLLHGETPAADLARELFDYSDGKGHAARTLLLSAT
PYRMLTLSGDEPDDGEHYRDFLETLSFLYGRTNGPDVAKALEREMREFRG
FLHALPGARNEAIGARHVVEDRLRKVMARTERVASTIERDSMVSEPPMAI
TILPSDLRQAAAVSDVARALDAPEITEYWKSAPYLLNFMRDYALKRLLKD
QLDKPAPNLCAALERARPAMLDRDRLDAYEPLEPANGRMRGVMDDVFGDG
LDQHLWIPPSLPYYGPERSGPPLTKALIFSSWSMVPDAIASILSYEAERR
MGVGASGQRYFGHVRPRPIQFRQNQGRLVAMRAMHLVYPSPTLARLADPL
AIFGASNETLSVEGMRKAVADRLRESVAALAERSGDTADGRDWEWAAPAV
IDAMAKASSVAWVNSPYGFALLGNEEGFKEHVAELRTVTTERTFGPVPDT
LIDLLVDVALGSPAVCALRALHRIAPDLAWDDHRLLKAANQISWGFRTLF
NQHDAVALLRKDDDDRYWRQVLTYGVEHNLQAVLDEYVHYLLDAEGLGAK
PAVDRIAGISRAISEALAIRPSQIDVEDPTVDGKKLVINKFQMRGRFAMR
LADYKDEEGGAARLSSVRDAFNSPFRPFALATTSVGQEGLDFHPYCYRLY
HWNLPGNPVDLEQREGRVHRFKGHAIRLNLAHRQVDVVRGRERDHDDPWQ
VMFDAARAETENDSDLIPYWIYEGPVKVERRVPMLPFSREVRRLEWLKRS
LTVYRLAFGQPRQEDLLEYLHSLMGTAMAAEDLADLQIRLQP
>RPA1026 possible adenine DNA methyltransferase
MVVSRRGASARAPRTQFEDMPESRIIVGDCIAEMEKLPPKSVDLVFADPP
YNLQLKGALKRPDESEVDAVDDDWDKFASFAAYDNFTRAWLLAARRIMKP
SATLWVIGSYHNIFRVGTIMQDLGFWVLNDIVWRKSNPMPNFRGRRFTNA
HETMIWAARDENAKGYTFNYDALKAANEDVQARSDWLIPLCTGDERLKGK
DGKKVHPTQKPEQLLARVLLSSSKPGDLVVDPFNGTGTTGAVAKRLRRNY
IGIERDKTYAEAARARIDSIEPLPDDTLKPFLTARDAPRVAFSELIERGM
ISPGARLVDSKKRHGALVRADGAIMLGDKVGSIHRIGAVAQGSEACNGWT
FWHVETSKGLRLIDELRAEIRSTMIA
>RPA0399 possible transposase
MPWREVSAVDQRREFVRLAMQEGANRRELCRRFGIHWTTGYKWLERCAAG
GDVVDLSRRPHESPRQTSAACEAQVLAVRDAHPAWGARKIASSMKRSGHS
APAVSTIHEILRRHGRIKSAGGGPPATLRFEMPAPNMLWQMDFKGWVRLG
NDVRCHPLTVVDDHSRYDLCLQACADQRGETVQDRLQTTFRHYGLPDTIF
VDNGSPWSDSSGERWTWFSVWLLKLGISVIRSRPYHPQSRGKNERFHRTL
DDEVFALRPLRDLAEAQRAFDSWREVYNFERPHESLGQLVPADRYQPSRR
SLPDRLPAPEYDERDIVRSVPKTKAYVSFKGRLWKVPQAFAGERLAIRPL
STDGKYGVFFAAHQVATIDLTGGESVGHVSEHVSTMSPG
>RPA1802 conserved hypothetical protein
MVIACDARASRGGVIPGMPLATARAMHPALDVIDHDPHADAALLNAIADW
CDRFTPLVAFDGSDGLLLDITGCAHLFGDEAKLLNMLTAALTRQGFAVSA
AIAGTAVAARALTRGGSGLIVAPGEEMRAVAPLPVAALGVDEAIVRGLRR
AGFKTVGEVLARQPTELAARFGEGFVAVLRQATGEDDAPISPRRPAPDYV
VDKNFAEPVATTEVILPTLLALARLLIAAMERNGKGARQLTASFFRSDGA
VRSISVETGQPVTRVEVVQRLFAEKLDALNDPLDPGFGFDLIRLAASVSV
AVTEAQRGFDTTAHQAEDVALLADTLAARLGARRVVRYLPQDTHIPERAA
LAVPVQHCPPDVGDAPWPARADEPPLRPLRLLQQPEPIEVIAGAPDDPPA
QFTWRRVHHRVARAEGPERIAMEWWCAAEPGLTRDYFRIEDEAGARFWVY
RDGLYNVEVTPEPDGNGQPRWYMHGLFA
>RPA2982 possible insertion element ISR1 hypothetical 10 KD protein A3
MKRSRFSEEQIIGILKEHEAGVSVADLCRKHGVSDASIYKWKAKFGGMDV
SEAKRLKSLEDENTRLKRLLADAMLDNAALKDLLGKKW
>RPA3179 Deoxyribodipyrimidine photolyase
MLTPASSRPLIVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDDVR
ALGGAVRWWLAQSLRALESELRALGGALILRRGPTAAVLAELAQQHDAAA
VHWNEIEIAAHRAVADALADALTVAGIAYHRHRGDTLVEPSAIRSKDGRG
MRVFTPFWRRVLSLGDPPQPLPRPTTLRPAPAVPTEQLSDWQLEPTAPDW
AGGLRQTWTPGEAAAQTRLAAFLAMQPGYAEGRDYPDRHITSGLSPHLRF
GEISPRQVWYAARFAAAERPAIAPDIDKFLSEVGWREFCRHLLFDHPDLA
SRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRV
RMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAA
PYFRVFNPVLQSEKFDAGGAYIRRWVPELARLPNDLIHQPWTATPLELAA
AGIKLGGNYPGPIVDHKTGRQRALSAYAELRQR
>RPA2981 P2 ISBm2
MVTPAAKRKAVAHLQTAFEMSERRACKAIGCCRMTVRYQTSRSDDAGLRQ
RMRAIAHERRRFGYRRLHVLLKREGYLVNHKKLFRLYREEKLTVRRRGGR
KRAAHELP
>RPA2477 possible ATP-dependent RNA helicase
MSFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTG
KTAAFVLPMLTMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQK
LNVALLIGGVSFGDQDLKLTRGVDVLIATPGRLLDHTERGGLLLTGVEML
IIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEIRRITETFLH
NPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIRGATDLKNAII
FCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPILV
ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVA
PSDQKSMAAVEKLIGQAISRAEVGPSVESEAANTEAEAERPSRSRRAAPE
ARQREPRREPREQRERKPRREPRSPASTTGTTAPPTAHASFGSPPPARDT
SSEAGDHSHLPAFLLRPVRARG
>RPA2980 integrase
MTVPVLPNDRWSLDFVSDQMTDGRRFRILTVVDDCTRECLALVVDTSLSG
ARVARELDRLVAERGKPKMVVSDNGSEFTSNAILTWADQSRIAWHYIAPG
KPMQNAFIESFNGRLRDELLNETLFTSLAQARVALRCWRADYNDARPHSQ
LGWRTPSEFAATCNPRRDLALRYIESSTPAPATAHMGPSNHPNELRPG
>RPA4755 possible DNA-3-methyladenine glycosidase II
MDARVKPAHDAGKPNHLMTIHLDSQADLEDAITTLVKRDPRLKPVLQVAG
MPALRRREPGFAGLAAIVCGQQLSTASAAAIWGRVSAAFEPFEHDAIKRA
RADRLARLGLSTAKIKTLKALAKELAAERLNLDVLAEEDADAAHATLTAL
HGIGPWTADIYLLFCLGHGDAWPAGDLAVQEAMRIGLGLKARPTVKQMAP
LAEPWRPLRGAAAHLWWAYYHAVKRREGVIGDDKAAKVVAKKVTAKTPRA
RKSPSR
>RPA0486 Staphylococcus nuclease (SNase-like)
MQAGDAVAAGCLDLPAQGEGVVASVIDPRTLRLADGREVRLTGIELAREQ
HDAEVAALSSLALGRRVSLHGADDGPDRYGRQWAFVGAEPGAELVQRRLL
ADGGALVGIDAMPAECRQELLAAEAGARAAAVGIWMARDVIKNAANSGDM
VTRIGRFTVIEGRITSVREVGSTVYLNFGGRWTRGFAVTISRRIVGLFEA
AGLAPKSLTGQRIRVRGWVEKRAGASMAVRDVGQIERAGGD
>RPA1166 N-6 Adenine-specific DNA methylase:Conserved hypothetical protein 95
METVAMRVIGGRLRGRNLVAPSSRDIRPTADRLRESVFNILMHAYENPIL
DARVLDLFAGTGALGIEASSRGAKFVLFVDNGAEARALLRANVETLGLGG
VSKVYRRDAANLGPAHPVEPFGVAFLDPPYRKQLAEASLASLRDGGWLLP
GALVIVEEAKDAGFAAPVGYTELDRRAYDDTEFTFLRFGQARS
>RPA2738 conserved hypothetical protein
MIWPFNLLRPPRTPPRGTIEAIYGTIVAQSRLPAFYQEFGVADTVNGRFE
MLVVHLWLVLRRIRSIQDASTFAQALFDYFCSDLDANLRELGVGDLSVPK
RMQAFGEAFYGRSAAYDLALTEGREDLELALNRNVLDGADIENARKLAVY
VGQVIAALDAVPPAKLRSGELPFPQPTA
>RPA3580 Integrase, catalytic domain
MTPAAKRKAVAHLQTAFEMSERRACKAIGCCRMTVRYQTSRSDDAGLRQR
MRAIAHERRRFGYRRLHVLLKREGYLVNHKKLFRLYREEKLTVRRRGGRK
RALGTRAPMTVPVLPNDRWSLDFVSDQMTDGRRFRILTVVDDCTRECLAL
VVDTSLSGARVARELDRLVAERGKPKMVVSDNGSEFTSNAILTWADQSRI
AWHYIAPGKPMQNAFIESFNGRLRDELLNETLFTSLAQARVALRCWRADY
NDARPHSQLGWRTPSEFAATCNPRRDLALRYIESSTPAPATAHMGPSNHP
NELRPG
>RPA1292 hypothetical protein
MLPRWQAVRNKLIGHVRQAIERTFAQLKGRYGFTRMRYAGITANAFHLDL
VSIAYNLRTAAAIR
>RPA1937 possible transposase
MTIAVPLAVAAGVDAGQRFLDVALAPSGQTFRMPNLAEGIAEIIARLERS
GVRRVVLEAIGPYAEPLVKALSVAGFEVGIVNPRRIKAFREAEGSRAKTD
RLDARLIARFALTMPETLRPLPTDTQLELKALSLRRRQLTEMIAMEKTRM
KQVRGTLLLDSHRAAIAALSAQCQAIEAELAKRIGDDAELRRVLHILKSI
PGIGERVATLLITDLPELGQRDRKAIASLAGLAPHVSQSGAAPPRAAIAG
GRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVALIAIARKLLV
TANALVKADTPYQGKTLDT
>RPA2332 Rare lipoprotein A:Staphylococcus nuclease (SNase-like)
MAPDRALRLQSPGAYAKPRHQRQWVGMRFFSKMMIGMAAAATIALAPGGA
DARGWDTVHRFVHKTGKCGAGKEVLASLYKIGSRTSSGEPMNHDGLTAAS
HEYPLGTTVVVTNPANGRSCSIRVNDRGPYGKPRDLGVKIDFTLGSARCL
GMRGTQYVCLPGEEPIEIAGIPLVIDGNTVEISGTKIRLQGIDAPETDQL
CVDEKGTGWTCGLAARDELAKRFGEKPWTCQVAGHDKYGRSLGSCAVNAE
SVEEWMVRSGWAVALVRSARAYEAAEVIARDAQSGLWSGAFIMPSDWRNR
NQQTTIVGAANVPSSALEILRGAASVAEAPSPECVIKGNIGKGGQCTYQQ
PGSHLYAKLKMGTGKRWFCSVKEAETAGCRAVKK
>RPA2776 probable DNA polymerase III, delta prime subunit
MSTRKASSKAAAPESTIRHPRETTELYGHHAAEQALLDAYRGGRIAHAWL
IGGAQGIGKATLAYRMARFVLTHREPQSDAVQSAASLAIDPDHPVARHIA
AEAHGGLLTLERSVNDKGVLRNVITVDESRETISFFGATAAIDGWRVCIV
DTVDDLNANSANALLKVIEEPPQRSLFLLLSNAPARVLPTIQSRCRKLML
RPLATADVIAAAADAAGVERDDPQLGEAAAASEGSVARALMLMGGGALTL
QQTTTALLDSLPNVDPRALHALGDAIGGTDRATLAAFVDGVDRWVAARLR
TPDPNAELPRLARLAEVWEKIGRAARDTEAYNLERKPLVFSVFGLLAEAV
R
>RPA4082 possible phage-like integrase
MAELGITLRTVQSLGPGETIWDAGHRAAVRGFGVRRQRGAPVYVLKYRAH
GRQRFFTIGPHGSPWTPERARREAKRLLGLVADGKDPADDRAEAALQAAD
TLLKIADQYLKHAKQKQRPRTYSEIERYLLTAWKPLHPVSVFLIKRRHVA
IRIAEIATGQGAVTAARARAALSAMFNWAIREGLDIPANPVLGTNRPAAP
RSRDRVLADGELAEIWAALGDDDYGRIVKLLLLTAQRREEVGSMRRTELD
LENSVWKIPGNRTKNHREHKVPLTKAAIALIPLPRGNREYVFGDGPRREG
DNHRGYSGWSKSKAGLDARLLAVRQKALDAGVAAEPLPDWHLHDLRRTAA
TVMADRLGVFPHIVEAVLNHVSGHRAGVAGVYNLARYETDMRAALNAWAD
NIKDIVAS
>RPA1293 putative IS5 transposase
MAQDSFIEALLPAGFGRNERLERISGLIDWGRLAVLIRKVRPGETGRPPY
EPLAMFKALLLQQWYGLSDPGLEEALLDRVSFRRFCGFALDAQTPDETTL
CRFRNALQQAGLGDALFQEVLRQLEAAGYVLKTGTLIDATLVQSSGRTLA
SGSTPREIESRSSHDPQANWTRHGAGRRLFFGYKAHIAIDQGSGLIRARK
LTGAKTYESEVAEDLVLGDEKAVYADKAYEKRARRQASKPAASRIASSIV
ATSTRRCCRDGRRCATS
>RPA2260 possible Viral (Superfamily 1) RNA helicase
MIEGSRRLPWQHITIRVPWHDGGWNGRACIAPSANTSCLVLRRIASAKRD
EQDGVAGKLFDELAPSELPPCIDERVGFMCDHDLVLTKQHPYKLSSPKTH
GHFGETKLRIEAYSAACIPFGWMLKSNVEGNESKGEFGKATTLRLAYDPE
REPDLSFETGWVQDKTNQLIMLDTFFGALQPKTSLCFFYAKKTPLSESAN
RVIIGAARVNGVGEHTEYVYEAPGDLKGVLWERCVRHSLRPGGEDGFLMP
YYEVLATAQADASVPIEDCVAFAPEEQFDAFSYGSEHLGHDGAIASLLAC
AAALRATAKVVEIDVSGALAWIDREIARLWKARGVHPGLGSALSAFGLEH
GSLLAHEIVRVGSREGAVFDGFAFIDGIVKNPSAFPQAEKLGFGSTYRDK
WKSLAPLRRQLLDLVARCSLSADQALRAYQPSQRGVFTEPTSDADLLANP
YLLYERDETAAQRIAFGVVDRGVFPADVIREIAPLPAQARMTDGIDKRRV
RALISDMLEHAVQNEGHTLLPRSWIVSRATGAPLDPRCVVDEDVIDMVAD
YLALTLETARTSDDELALKLRRYGASRTAITSAVHKRVGGKRHSIVHKWR
ALVDAVLPPMEAGPEAEVEELARREKSGALEQLACGRFSVLIGPAGSGKT
TLLKVLCDLPEISSGGILLLAPTGKARVRLEEATKRLGEGQTLAQFLQRY
ERYDGASGRYFRNPKAPREKGYRSVIVDECSMLTEDQLSALIDAIEGVDR
LILVGDPRQLPPIGAGRPFVDICRKLAPSEETPQFPKVAPGYAELTIIGR
QRGTDRGDVLLARQFSGEPLDAGADEVWEALRSGTLSHVRTAHWALPSDL
EPRLTDEIVRGLALADRSDQRGFELSIGGSEWEGHVLFWERRADQREGGA
AEAAHDWQILSPVRAGAPGVEAINLAIQRRFRNKVRERALTPNAKYPKPA
GPQGILWGDKVINLRNNGRRRTYPRQEKPYVANGDIGIVVGGYKRGKMKF
RPRDLEVEFASQPGVKFTYYAGEFSGEEGTPELELAYALTIHKTQGSQFE
RTFVVLPRHCRPLSRELLYTALTRHQEELNLLHEDDIGALRRYSDPSASE
IARRMTDLFDAPGPVEVKTVSGPRFLDKHLLHRTSRGEFVRSKSELAIAE
KLNGMGIGYVYEQPLQLDGKTRWPDFTITDEDSGITYYWEHLGMLSDPQY
AARWQIKRSAYLAAGIRPIGEQADGDVLIETREDAGVGLDMVEVDRLARL
ILR
>RPA0771 possible protein commonly found in insertion elements
MKRSRFSEEQIIGILKEHEAGVSVADLCRKHGVSDASIYKWKAKFGGMDV
SEAKRLKSLEDENTRLKRLLADAMLDNAALKDLLGKKW
>RPA4136 possible DNA topoisomerase
MALAMVSSPTRRLAHQAGVVMTLSGVGLSQSQPPLPTELPGHRSALNHAH
HLASQLVVDHRPPGHQRELMGVLDQRELAARQLDGLLEHALHGLTITSGP
KRQRPRGWPAGKTLEVAQELYDGQGKKIITYPRAEVRYLPQSLIADVPRI
VAGLRVGQSFGAIPVPEPPVIRRGASGSFHDKGLEGASHHAIIPNVNTID
KLPEICPRLSSDEKKLFDVIARAYLAALMPDFRYRQTTATLDVRGYEFRA
AGRQPIELGWRAAFPEWQPAEEKGDEAQLLPPLRDGETAKLQDPKIEDKE
TRPPPRYNEGTLIEAMQNAWRFVEDGALRERLKEAKGIGTPATRAEIIGG
LKKQAFLVIQGKHIVPTEAGLSLFGILQQADPALVDPGVTAQLECLLDDV
VIGKQEMLSAIDAVCHVAQRIIGKLTERAAAGSPALLGDAAGSSARSFPP
TPAMKRYADSLARQLGIKPPSGYKTSISICGAFLKQHAPKKADGDLNATA
EPKPVSSAQLSYATKIAIAKGIAVPDQAEIDAAAMAAWIDLNKRTKRRTR
SRKAAARTAGTTSSRSMASPKRVRKSKVEAPADAAPPTPNSATATPLRIP
YGNKEVALRLGARYRNGGWFAPPGVDLAAFSERGWL
>RPA2216 hypothetical protein
MTTLSNRRTIVAHGRLAMRELRLDAARQRRHGVQIMSFEQLAVRLAGGFA
RPIDDECLRTAIQAVLPDTTLGELESIKLLPGMVDAAADTLHKAWRAGID
LAARAGDHPRLDSIARLEAAVLAQLPPGMMRPTDLVARALERVAHAHAVL
GPLEIVGITELSPCWRPLLQELTAHTSVSWTAGPRPTPPWLDAFDVTINR
ADPTAPAISTVSAATAYHEAIEAIRWARGLMASGEAEPADIAIAAASTGD
YDDHLLALRADANLDLHFVHGIKVTTTRDGQAAAALADLLIRGFSQTRMR
RLAALCGSETGPFAGLPQGWLRVLPTDAPLASPASWHRLLDRLTADDWPD
ATDHTPTLRGIIDLLAKGHPTAAEIGAAFLSGRALAIWRKALLAGPSGSL
DATLDSLKQDDGLEACVSVAWMPASALAASPRRFVRLIGMNSSRWPRGIS
EDRLISDHIIPTAELDPLPVGAADRRDFETILATTSGQIVMSRARRDSEG
RLLGRSALLGPASEEIYIRRNAVPAHAFSETDRLMARPDEFARDSQAISA
TTAWRNWHRKEITPHDGLVRADHPLLQAILGRTQSASSLRLLLRSPLGFV
WRYGMRLRTPESGADPLVLDALAMGDLVHMTLDLALATLEKGGGLAAADE
AQIAGAVQDAAARIAVVWESERAVPPALIWRRTLDDARILTTRALTYGDE
HLPDARSFGEVAFGGATPKADTASPWDSQTPVEIPATGFRIAGYIDRLDI
AGDGKRALVRDYKTGRPPKDDISLDGGRELQRCLYAFAVKALLGDDVSVS
ASLLFPRDQVDFQLGDPEATLTEITGYLQAARANLQSGQALIGPDTGGAY
DDLAFALPANAGATYCKRKLPAATEAFGDAALVWEAQ
>RPA2690 possible uracil-DNA glycosylase
MPTLTRGSGPRVPTSLTDPDRDCPFCPRLAEFRSEVRAREPGWFNAPVPS
FGGADASLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLIDYGFAQGHY
QARPDDGLQLIDCRISNAVRCVPPQNKPLPLEINTCRRFLIATIEAMPKL
RAIVLLGRIAHDSTLKALGLRAAQAPFGHGAVHDAGRLRLYDSYHCSRYN
TNTGVLTPKMFRDVFARVRTDLDT
>RPA0613 NUDIX hydrolase
MSTPFPLGQPAFVTHVLDRAAHLRGNDAKLMAMEERGDTRAYVVHRDSLL
VKHEAGGPRAELTIKEALALGANPGTIFLGLRNSAAVFGMGIGAPAADKL
AGRTDAGLAELRGLAMQGALPVEQLSAIAMAKSLVNWHQRHGYCANCGTR
TAMAQGGWKRDCPSCKAEHFPRTDPVVIMLVTRGDQCLLGRQKQFPAGMY
SCLAGFVEAAETIEDAVRREIVEESGILCTDVRYYMTQPWPYPSSLMIAC
TATATSDDITVDLTELEDARWFSRDEAAQMLKREHPDGLLGPHPFAVAHH
LLGRWLEGQS
>RPA2778 possible deoxyribonuclease
MLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVRKLPDLVAIA
ERFPTVYCSVGTHPHHADEEDGIATDELVKLAQHPKVVAFGEAGLDYFYE
MGSREAQERGFRAHIAAARETGLPLVIHTREADEDCGKILEDEMGKGAFR
AVLHCYTGGRDLAMQAIDLGLMISFTGILTFKKSQALRDLAAELPADRVL
VETDSPYLAPGKYRGKRNEPSYVVETAKVLAEVRGVSLDEIARQTTENFF
RLFGKVPAPAAA
>RPA3853 hypothetical protein
MAQWLPAMGFASLAHISERKARSALERSLRKNKPWRGTRLTVRLAPGAGG
PRGVRYEVELSSLPLALQEAWKALQSPVKAIPNLRDDCNNVGHWRHHIIA
PALRHEKWSAARGEAVRKIAAETRTGPDGKPVTITDRTVQRWLDAYEAEG
IAGLMLRARRDKGAQRVVISQRWDGAVPFDEAIKETIAESLKAYIRGLHK
EGTSAALIDTLAADRLRQLTAARCDYAPAMPALTFKVPRPLIDAERQFRN
VALFKKDRKAYEDSRPRIFRTREGLAPMQIIVGDVHHLDICMMRPDGTVA
WPKAIAWLDLATNRIWLDVVLLEKGEGIRNTHVIARSAAGCRSISSLTQC
STKTPTRYRAPSASRAWMPSG
>RPA3856 hypothetical protein
MGKPFKRTVAGVEVVTIPLADYAKLLDCQRQLAELRAVQSGLKGSSNGHS
RSPIDRDPEVAAFIANRLGQMTFSDIREACLDQFGADRAPSRSAIHLYSI
RVASRLRRTQSHEPPGNPA
>RPA3704 Excinuclease ABC, C subunit, N-terminal
MPYYVYLLASGKHGTLYLGVTNDLVRRVHEHRSKAAPGFSERYSIDRLVW
FEIYDDAVTAITREKQLKKWRRDWKIRLIEEQNPDWADLYPGICS
>RPA3670 putative ATP-dependent RNA helicase
MMERTNLLTSFQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVV
GIAQTGTGKTASFALPILHRLLQNRIKPASKTCRVLVLSPTRELSGQILD
SFNAYGRHVHLSAALAIGGVPMGRQVRSLMGGVDVLVATPGRLLDLVQGN
ALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKD
IADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPAALAQILKDD
KVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRT
GELRTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADG
TAISLCAGEEMAYLRDIEKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQA
PHGHSPRNGDAPTRGKNHRRRGPAAGPARQSDASRHEAAPRPQHGGNGEG
LQGVAFLQRKNRPAQPTAQHRPHR
>RPA2218 possible ATP-dependent RNA helicase
MARLEEIRNGASVRGIASPQAAQILSVDWIGDQAINVVYRDLNGAVAEAV
LYRDDEYRLEVEVNGRPWSFDGDGALLRLVTEANRIKLAHFFDPYLAIHT
SLVDPLPHQISAVYGEMLPRQPLRFLLADDPGAGKTIMAGLLIKELIARS
DLERCLVVAPGSLVEQWQDELGQKFNLEFDILTRDMIETSRSGNPFEDRN
RLIVRLDVLARNEELQEKLASAREWDLIICDEAHRMSATYFGGDVKYTKR
YQVGQKLGEACRHLLLMSATPHNGKEEDFQLFMALLDGDRFEGRFRDGVH
YADTADMMRRLTKEELLRFDGRPLFPERRAYTVKYQLSELEAALYTAVTE
YVRTEMNRVQRFAEGDGKKRNNVGFALQILQRRLASSPAAIYQSLKRRRE
RLENELGEARLAAKGRRAGFAAPDVNADILKNIEEYGQDEIDDLEDLIAT
GATTAETVEQLALEVETLKGLETMALGVLRSGLDAKWTQLNRILDDDLMV
DADGNRRKLIIFTEPKDTLHYLVDKVRARLGNPDAVDVIHGGVSREERRK
VIERFMQDRDMLVLIANDAAGEGVNLQRGHLMVNYDLPWNPNKIEQRFGR
IHRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGGRVYDVLGE
LFEGVALKDLLFQAIQYGEQEDVKARLFRQVDGAVDQGHLLELLQRRALT
NDTMPEAKVEELRLEMERAEAQRLQPHHVQSFFVEAFQHLGGKMKRREEG
RWEITHVPVRIRERDRQIGTGAPIQKKYERICFEKGRINQQPVATFVCPG
HPLLEAVISIVREQYEQIMRQGAILVDDLDAGTDLSAVFLLEHSIQDGLA
TSAGKPHVVSQKLQFASINKAGEAVNAGIAPHLNLRPATPEEIASVQDVL
HEDWLTTELEKTAVRFATVELAQAHVAEIKARRLPEIEKVEREVRARLKK
EINYWDSRAFELKEEEKAGKKTRLSWQNAQRRAEDLAERQKRRMDQLEQE
RFISSQPPRVRGGMVVVPRGLLDARGIPGAAPAEGAPPPFSADADARRVI
ELAAMDAVIATERALGNVPSDVSAQKIGYDIASYDPRTKHLRFIEVKGRV
HGADTVMITRQEVITSLHEPDKYILAIVQVEDGTARDPRYVHGALSDHEP
SFEHTAIQFHLARLLERAEAPR
>RPA3200 putative dual serine/threonine-protein kinase/phosphatase
MAFGSFARSGGSSRFLFTAGRMAQQLTVSIGQASSPGRKPVNQDFYGALI
PAEPLLITKGIALALADGISSSDISQVASESAVKSFLTDYYCTSEAWSVK
SSAQRVIAATNSWLHAETRRSDYRYDRDKGYVCTLSALVIKGAAAHLFHI
GDSRIYRLAGASLEQLTEDHRVRLSAEQSYLGRALGVNPQVEIDYLSVPI
GSGDLFVLATDGVYEHVAHRFVVQTLRDHGDDLDAAARAIVGEAFNNGSD
DNLTVQVVRIESVPGADSIDLFERVAELPLPPLLEPRAEFDGYRIIRELH
GSSRSHIYLASDLATGELVVLKIPSADLRDDPEYRKRFMLEEWAARRIDS
PHVLKPCVVQRPRSYLYVTFEYIEGQTLAQWMIDHPRAELETVRGLIEQI
AKGLYAFHRKEMVHQDLRPANVLIDRSGTVKIIDFGSVRVAGVAELGPAG
GDELLGTVQYMAPEYFAGQGGSALSDQFSLGVIAYQMLTGRLPYGAELAR
ANQALKSRKLRYSAAADHNAKVPVWVDRALQRAVSLDPAKRYPALSEFVH
DLRHPRADYLDARPQPLAARNPLLFLQLLSALLALIVVGLLARLHGSI
>RPA2240 possible replication protein A
MSSRPSAQPGRRHPTPERDQLELFRAIPGDLAPRDAQDLMAYPFFSLAKS
KRLKPIDFQAGSVAIRVEAVPEHGMATIWDADVLIWAASQLVEARDHGFR
TSRLVAATPYEILTFVGRGTSARDYDRLKAGLDRLQATTVATTIRQPSER
RRHRFSWINEWKETSDSKGRPYGVELILPDWFYSAVLDDALILTIDRAYF
DLTGGLERWLYRIVRKHGGRQPGGWSFDLTHLHAKSGSLSPLKHFAYDLR
DIVRRQPLPGYKLTLERPYGFDRLVFVPTTDPLDFAIPRRLRGAFAGDKL
>RPA3127 NUDIX hydrolase
MTESATQTEPKVEQDHQEPSHHPYFRPKDAATLILVDRSGATPKVLVGKR
HDNVVFMPGKFVFPGGRVDKSDVRVPVAAPIPPELEANLLKGSPKTTPSR
ARALAIAAIREACEETGLCLGCKTDAKAKLDGPWQPFVEAGLLPDPSGLF
LIARAITPPGRIKRFDTRFFTADASAIAHRVEGVVHADAELVELVWVELG
SKPLADLHPMTKNVLGELDRRLATGPLRHDAPVPFFHFYGGKMQKDMLPG
G
>RPA0506 site-specific integrase/recombinase XerD
MRRPRTISRAAPLREPEAQAATLRPASYSDAGLTELFLDMIAAEQGASAN
TLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLDNRGFATSSVAR
RLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLAC
ARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARM
IVVRGKGDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFG
ESGYLTRQHFARDLKDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRI
VQTLLGHSDISTTQIYTHVVEERLKSLVRDLHPLGEGR
>RPA2252 putative ardC antirestriction protein
MTRPASKGHARTQRSNIYDEITTKIIAELEAGRLPWVQPWGSNTISAPLA
MPRNAATDRGYSGINVLILWGAVVQHGFATQGWLTFRQALGLGGNVRKGE
HGTTVVYADRFIPDDERRRARDNGDDPAAIPFLKRFTVFNVAQCEGLPDG
LSAPPPPIPEGLIVPEVEALIRASGADLRLGGDKAFYAPSPDFIQIPRPE
AYFEPINWHRTALHELGHWSGHPGRLARDLSGGFGSKAYSREELVAEMTS
AFCCASLGIAPTVRHADYIGAWLDVLREDNRAIVRAASAASKAADYLLAF
APSATAREEDREAA
>RPA1327 Ser/Thr protein kinase
MATSQQTCHGEARCSSEEPRPYQAINRQWWSELALSFTGLADGIETHLAE
EKSGRTWRIRSAAAGTFAAARLEREATLAARVGAAAAELPAYVGNSDKVV
LVYPAARRALASLPIGEVAVDRFLAIAEAAAIALSRVHACDVVHGTLDAG
KVLLDENGLVRFAEFGRARLTGQELAPDMSGLPQIDFKYAAPEQARRDHP
VLDTRSDLYALGVILYEFLVGRPPLLAASIADWLHAHVAIDVLPPSHIRG
GIPPAIDAVLLKLLAKDPGQRYQTASELQAEIARIAVLAWSGGRGGHTSL
SVRKAGRPGPSRRRVVWP
>RPA3819 hypothetical protein
MAEVSNELIFEVLKQVQQRLDKVDHKVDELKSEMNAMRGYLISMQQDVQN
VYAILGRYDGRLEHIERRLELNDAPAIST
>RPA3811 Excinuclease ABC, C subunit, N-terminal
MAYWVYILASAPGGTLYVGVTNDLVRRTYEHREGLVEGFTRKYGVKRLVY
FEAHDSIIAAIQREKNIKHWPREWKIDLIVRGNPDWDDLYEEIIR
>RPA0768 possible transposase
MRVEQELRLKGLQVSAGGIRGAWQRHGLLTKHERLLRLEKTTAERTIELS
DEQTRLLERFSPEFRERHIEAPHTGSLVAVDTFFVGTLKGVGKVYLQTAI
DCHSRYAFARLYSSKLPVTAVHLMNNDVLPTFEAHDAKIETVLSDNGREF
CGRPDQHPYELFLQLEDIDHRTTRVKRPQSNGIVERLHRTLLDEHFRVEG
RRTWFETIDEMQTVLDDYLVGYNQRRPHQGRGMNGRTPATAFVEGLPTSQ
QRKEGKKAGKQATKVAA
>RPA2220 conserved unknown protein
MTSTNNYKKKLIEVAIPLEAINAASAREKSIRHGHPSTLHPWWARRPLAA
CRAVLFAQMVDDPSSDPERFSTDEAVENERQRLFKIIEDLVIWENSTNEE
VIERARVEIRKSCGGELPPIYDPFSGGGSIPLEAQRLGLPAFGSDLNPVA
VMIGKAMIEIPPRYKDCRPVHRGVLDRNHYRNAEGLAEDVRFYGRQIREQ
ALERIGKLYPDVNLPKELGGGNATPMAWIWARTVASPDPSLQGQHVPLVN
SFILSSKKGKEAIVKPIVDRALGAYSFTIERNALSKQDLETAALGTKAGK
AQDFVCVLSKNAITRDYIRTEGKAGRLGARLMAVVCEGKGGRTYISPSAD
METLAQSAGEYADIATAKETFLSGSTPTRAMITGGVCSAYGLSTWGHLFS
DRQMVALLTFSELVHAIGAHIERDAIAAGLADDKIPLRSGGTGAKAYAEA
VSVYLAFAVDKCADYWSSLCSWHSSGEKMRNTFGRQALPMVWDYAEANPF
CDSSGNWGAMLDWVWKTVENIHPGNSGVEVQSDAQAVIYPPNTVISTDPP
YYDNIAYADLSDFFFCWMKPSLKHIYPDLFGLLSTPKAEELVATQFRHGT
KEAAEAFFLSGMRDVISNMAASTSNEYPATIYYAFKQSEIAQEGISSTGW
ATFLQAVVEAGYAVVGTWPLRTEMASRMIASGTNALANSVVLVCRKKSAV
AETVSRAEFIRALKRELPSAIGELQAANIAPADMPQSAIGPGMGVFSRYK
AVIESDDSPMSVKAALQLINRELDEYLGGIQGEFDADTRFAITWFEQHGT
KTGEYGSANSIAQARGISVESVKHAGIVESSAGKVRILGRDELDADWDPA
GDGHLTVWECCQHLIRALETDGEHSAATLLKKIGSEKADAVKDLAYCLYG
ICEKRSDAKDATSYNALIAVWTELTRQAAAIHDTGGDRQTRLDL
>RPA3189 NUDIX hydrolase
MTTEAAARPASTIVLLRQAAAGFDVFMMVRNYQVEFASGALVFPGGSVDA
GDRDIVARPELYAGVDASVGPALEFRIAAIRETFEESGILLARPRGGDAL
VAASRAAEIEAAHRKALCDGSIAFAQILADNELVLALDLLVPYAHWITPE
KLPKRFDTWFFLAEAPPEQLGMHDGWETTDSIWLSPREALDGGDSGRFTL
PFPTTRNLIRLGQQPSVAAALDHARAQSIVTVLPIMSKDGDKRLLRIPAE
AGYDGELFEFSGA
>RPA2204 integrase
MLTDVALKNLKPREKAYKVTDRDGLYVQVSTSGTLTFRLDYRLHGRRETL
TLGKYGPSGLSLARAREATIDAKRAVFEGRSPAQEKQRDKRRIKEAKSFG
EFGERWLVKAPMADSTRAMRRSIFERELLPVWKNRLLTEITPDDLRAHCG
KIVDRGAPATAIHVRDILKQIYGFAILHGEKVANPADDVGPASIATFVPK
DRSLSPTEIRVMLKQLDHVATLPTIRLGMRLFLLTMVRKSELQDAVWDEV
DFENAVWTIPKERMKRSKAHNVYLSQQCLDIMIALKTCAGNSRYLLPSRY
DADAPMSRATFNRVTYAVVERAQKEGLPLEPFTVHDLRRTGSTLLNELGF
NSDWIEKCLAHEDGRSSRGVYNKAEYEHQRRHMMQEWSDIIDAWVAGQKR
VPVLIPPSMPMLAPDPAL
>RPA3059 hypothetical protein
MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDSHLW
TYRDDSFLPHATWRVADAAHQPILLTTGEGNPNGAKVRFLVDNAALPEDS
GSYERMVLLFNGDDDEAVAMARDAWKQCKAKAFEVTYWQADEAGRWQRRD
>RPA3650 ATP-dependent DNA ligase
MASNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRRFVIQKHDATRLHYDLR
LEYGGVFKSWAVTKGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGG
GTVQLWDRGYWECDDPERGFKTGDLKFTLHGEKLHGSWVLVRMRHDRSGG
KRTNWLLIKHRDDDAREGDANTVLDEDRSVASGRAMDTIAEGKGKAPKPF
MLRKAATRVTADAVWDSNTGLAADKRAETGAAKKVAKSKPTTSAKAKAAK
SAKPASRSKPAAQGKRAAMPDFVPPQLCTSVERPPGGEGWGHEIKFDGYR
MQLRVEHGEARLLTRKGLDWTAKFGAIADEAASLPDAIIDTEVVALDSHG
QPDFASLQAALSDGHTENLICFAFDLLYVDGEDLRGLPLAERKARLAALL
KAARGRRKEGLIRYVEHFDTGGDAILQSACKLSLEGIVSKKLDAAYRSGR
SDGWTKAKCRAGHEVVIGGWKTTNGKFRSLLVGVHRGDDLAYVGIVGTGF
GQDVVKRILPELKAHKADTSPFSGANAPKKTREVHWVTPDLVAEIEFAGF
TGAGMVRQASFKGLRADKPAEEVEAEEPQRVELAEPAPMRRIAKASKSGK
PAAKRAAPRRADAARSEVMGVAISKPDKELWPASEIGAAITKRDLADYFA
EVGDWLIPHIKGRPCSILRAPDGIDGEHFFQRHAMPGMSNLIGLAKVSGD
RKPYVQIDRVEGLIAAAQIGGVELHPWNCAPNRYDVPGRLVFDLDPAPEV
GFDEVITAAKEMKQRLEALGLKTFCKTTGGKGLHVVVPLKPDDGIDWKAA
KTFAQTVCAQMAEDSPEQYLLNMSKRKRIGKIFLDYLRNDRMSTAVAVLS
PRARTGATVSMPLTWSQVKAGLDPKRYTIESVPALIKRSKAWTDYDDAAT
PLKAAIRTLTSGKT
>RPA3830 possible G/U mismatch-specific DNA glycosylase
MILPDVLQRGLKVVFCGTAAGRASEKAQSYYAHGRNKFWSVLSETGLTTR
KLAPHEFREVTNFGIGLTDLCKDVAGSDHDVRPRPEHRVVLRRKIEEHRP
DFLAFTSLEAAKRFVGRRVGLGRYEESIGTTSIYVLPSTSPMADWNWMSN
KIHWWEFAELVRAS
>RPA3579 possible insertion element ISR1 hypothetical 10 KD protein A3
MKRSRFSEEQIIGILKEHEAGVSVADLCRKHGVSDASIYKWKAKFGGMDV
SEAKRLKSLEDENTRLKRLLADAMLDNAALKDLLGKKW
>RPA4390 NUDIX hydrolase
MTAVQNLRLKFEPVLTRMFHLYWRFARGMTLGARGVVLDAEDRVFLIQHS
YVGGWHLPGGGVEVGESFVDALTRELMEEGRIALTGAPALHGIFFNSHVS
PRDHVAVYVVRQYQQDRPPEPNHEIIASGFFAADALPVETTPGTRLRIAE
VLEGRPPIATWR
>RPA1033 DUF85:Elongator protein 3/MiaB/NifB
MSRASNALKRPPVTAPSEPVGASSPFPAIEVAVDEQRRRGRGAQSNVSGR
YEAEARTAFDDGWESLEDLPPFKTTVALDTARKVITRNESPDIGFDRSIN
PYRGCEHGCVYCFARPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAP
EYEPRMIAIGTNTDPYQPIERERKIMRGILEVLEKTGHPVGIVTKSALVV
RDIDILARMAKRQLAKVALSVTSLDPKLARSMEPRASTPAKRLEALKLLA
DAGIPTTVMVAPVIPALNDMEIERILDAAAHAGVKEASYVLLRLPLEVRD
LFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGR
RFETACTRLGLNKRRSKLTLDHFEKPEKAGQQLSLF
>RPA3837 possible insertion element ISR1
MKRSRFSEEQIIGILKEHEAGVSVADLCRKHGVSDASIYKWKAKFGGMDV
SEAKRLKSLEDENTRLKRLLADAMLDNAALKDLLGKKW
>RPA4001 putative DEAD-box protein, ATP-independent RNA helicase
MSFVTFPTSPPPLARALAERNYLQATPVQSAVLAPDTAGRDLLVSAQTGS
GKTVAYGLAIAQDLLGDAEQFAPAAAPLALIVAPTRELALQVHRELSWLY
RHAGGRIVSCVGGMDPRREQRELADGAHIVVGTPGRLCDHLRRNRLDVSQ
LKAVVLDEADEMLDLGFREDMEFILETTPETRRTLLFSATLPRGIIALAK
TYQHDAMRIEVEGAEGGHADIEYRAIRIAPNDVEHAVVNVLRYVESPTAI
VFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVC
VATDVAARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGVSVLLV
PPARRRRAELLLQLAGIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTA
EDQALAQALLAERSPEQIAVALARVVRARMPAPEDILDPGERPARGRDER
PGKTAREPRDHEARDKAPRSRSAKAGEKHAITGGVWFRAAIGKRKNAEAR
WLLPMICRRGGITRQDIGAIRILDTTTEFEISSAAADAFAAQIKRPDHDD
NIRIEPLIGAKPIPPRDDNRPPRQDADRKPDRETRRAKRPDSWSPLSGEP
LPDPREQDAPRPGKRVPHDDAPRGGKPARFKDKGFKTRGEDAFEGDFKAK
PFKTDGFKAGKAKGDKPAYVSKARRADPSAKNPPFKKKAKKKFR
>RPA3687 putative MutT/ADP-ribose pyrophosphatase
MSESDQTDQLADRAANVTVSAPELIGQGFMAYERFEVSIRRDGEPPLLQR
RDVLRASRVAAVVPIDLARDSIVLIRQFRLPAHLATGRGDMVEIVAGRVD
PHESDADAARRECIEEIGVAPTQLAELYRVLPTPGLTDEQVIFFVGHVDS
SAVLQRAGLAEEDEDTEPFVVAIDEALAALSRGAFTNALLVTALQWLALN
RARLRECFSRAA
>RPA0323 Protein of unknown function UPF0102
MAKTDRSQPSVLARIAAFRTGLSAEASAADYLERQGYRILARRFKTRCGE
IDLVAQRDALVAFVEVKARGNVDDAAYAVTPRQQSRIVAAAEAWLSRHPE
HAMSELRFDAILIAPNTAPRHLPGAFDATP
>RPA3049 conserved hypothetical protein
MERPVPVRVEPRQLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPN
RIMMLVGPEGSGKSHLAAIWAELAGARSTAAQALNAAAVPGALATGAVVV
EDLVPGSFDERALFHLMNMAREDEAYVLFTGRVEPSALSIELRDLKSRLR
TVPVVSLLPPDDALFRALIVKFCADRQMCIDAALVGYLANRIDRSFVAAR
QVVEKLDTTALRLGRPVTRALASEVLRAD
>RPA0802 possible DNA ligase
MNRFAELLDRLGYEPGRNNKLRLITNYFREVEDPDRGWALAALTGALSFR
HAKPGLIRALIAERTDPVLFGLSYDYVGDLSETVALMWPSPRNTAVSSSP
GWASSPPPCGEGSGVGVHDETPSSERPHPTPLPQAGEGARPASGEDVASQ
RQLISTGHNNPPPPTLTEIVTTLHSLGKAELPAQLARWLDELDEIGRWAL
LKLVTGALRIGVSARLAKTAAAALGDKDPHDVELVWPGLQPPYRELFAWL
EDRGPQPVNRDPAPFRPVMLAHAIDDTDFAAINPADYIAEWKWDGIRVQA
VSGQNEHGDTVVRLYSRSGEDITMSFPDLLPSLHLPGAIDGELLVLRDKR
VQSFNVLQQRLNRKSVTPKLTKDYPIHLRAYDLLGEGDEDLRTLPFAERR
ARLETFIARLDDPKVDLSPIVTFDDWEALRAARRDPASAGAGLDADAVEG
VMLKRRDALYLPGRPKGQWWKWKHDPHIIDAVLMYAQRGHGKRSSYYSDY
TFGVWTEGDAGDQLVPVGKAYFGFTDEELLQIDRFVRRNTTEKFGPVRHV
VHEPDKGLVLEVAFEGLQRSPRHKSGVAMRFPRINRLRWDKPPKDADRLE
TLERMLKAETTNPPATSARGH
>RPA2156 hypothetical protein
MSASFDRYVSFQHCDWEGRSERVMQRLQRHVEAAENPFWAYFAQKRAELR
DKQGLDDLRILHNYLPTLRELLEDNGDLETLEMLEDLEANLM
>RPA0782 conserved unknown protein
MPAHSRPYPLVDRLLETFADWLKHRREVVEMCQFDSAEFGRIAHDLGVTA
SDLDELVRQGPHKVEELPQLLKVLGIDEDAIARAQPLVMRDLERVCALCR
HKAECDHDIADGSLAEHYQAYCANKVTLDALDKDFHVAPGTVRH
>RPA4546 conserved hypothetical protein
MIPARQMTFAEFAALGYTRLVPIIPHDAPISEGSSLFKRVGTKQDSRGKA
VGVRGLNGWYGYDWLNQPDPDEHDLARWQRMGAGVGIMTGGPLNLIAVDA
DTLDQACAGKVMIAGMKHFGSTPVRIGRAPKAVYLIRVTEPIQYCRVEFG
PLNDEGRRVDRVELLSDGRQFVAHGIHPVTKKPYVWTTPLCHVDKLPVVT
PQQLAAFMDELRQILPNTGPLVTEGATTEVSQASLRGDIEKVRAAVAATP
NTSAAFGTREAYRDFGYAIKAALPDDEPEAFEIFADWCARWEDGENDPDI
VAADWRRMKPPFRRGASWIYELAEETSGGKFKRADAFFDVLPDEPESLFP
REAPPAPERPPFKLAPTPYSFPDPASIPRRRWLYGRHYIRGFVSATVAPG
GIGKSSLTIVEALAMTSGKPLLGERSPENLRVWIWNGEDPVDELQRRVAA
AMHHYSVGPADVGDRLLIDSGMEQPITLAEDGRSGARLNEDVMAELVRVI
KSRKIDAVIVDPLVSSHRVSENDNGAVDLVVKAWGRIAFQTGASVMLVHH
VRKTNGDAITVEDARGASALVNGTRVARALTPMTPNEGAKLGVEKPWLFF
RSGGVTKNNLAPAEAAPAEKASWFALQSVPLGNGAGEGVDALMSGDTVGV
VVLADLAAAAGPRDPDTIGRILQALGDDDWRADVRAGDAWIGSPVAGAIG
LNAADAADRAVINGQVKRMLRDGLLEQITLREGRNRKSKAFYRRTAAGKS
VVEGVTTPPALLAEQEGVFA
>RPA4335 DnaB helicase
MRLSAPVYRLKRKAKLLSRAQNVPLHAALDHVAATEGFERWSLLVESAAA
SPAVRLFGALNPGDLVLLGARPGQGKTLLSLELAVEAIKAGRTSAFFTLE
YTEAEVLTRLRAIGADPASLADKFTLDTSDAICSDYIIARLASAARGSLV
VIDYLQLLDRRRDTPDLNSQIRALRSFARRAGVILVIISQIDRSYDPAKK
RCPDLSDVRLMNELDLSLFSHACFVGADEIRWSPVPAAA
>RPA2700 putative DNA repair protein RecO
MEWSDEGIILGVRRHGESAAIVELLTRGHGRHLGMVRGGASARMRPLLQP
GNSVLASWRARLDEHLGYYQLEATKMRAATLLGSSHAVYGVTHLASLARL
LPERDPHEEIYQRLVLTLDDFDDFGVAAAHLIRFELAILAELGFGLDLSA
CAATGSTTELIYVSPKSGSAVSRSAGEPWRDRLLRLPAFLRDDEAESGHG
WSGQDLFDGFELTGRFLLRNVLEPRGQSHSDARAGFINAITRALQRPAES
>RPA3518 Excinuclease ABC, C subunit, N-terminal
MPYYVYLLASRKDGALYVGVTNDLVRRAYEHRTKAVPGFTSKYNIAKLVW
FEIHDDPISAITREKEIKKWRRAWKVALIERDNPGWDDLFETIAS
>RPA3625 Excinuclease ABC, C subunit, N-terminal
MVFSTVQISMPGTSWAVAAGLHSSGASSASAIISLPAIVVSFGCIGHQRS
RWRAGRQQLCPAADCRTQRSRARFANMQEAPAEEECFVYVLGCASAGRYV
TYVGWTLDLDRRLTQHNTGTGARSTRGRAWVLIHSERFTCRRDAMSREWH
LKRDRAFRRRLAAEAQARDAVPTKKTAKTVPAHNTSRRRS
>RPA3475 putative transposase
MTIAVPLAVAAGVDAGQRFLDVALAPSGQTFRMPNLAEGIAEIIARLERS
GVRRVVLEAIGPYAEPLVKALSVAGFEVGIVNPRRIKAFREAEGSRAKTD
RLDARLIARFALTMPETLRPLPTDTQLELKALSLRRRQLTEMIAMEKTRM
KQVRGTLLLDSHRAAIAALSAQCQAIEAELAKRIGDDAELRRVLHILKSI
PGIGERVATLLITDLPELGQRDRKAIASLAGLAPHVSQSGAAPPRAAIAG
GRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVALIAIARKLLV
TANALVKADTPYQGKTLDT
>RPA2534 hypothetical protein
MSYGERRGGKLTGVWIGERVVNGTKRRCRANTKKDADAWETYIDRFGVLP
TDGTGSSNPNTLGALKVRARSERADWKASRDPSLDQRLEEVVSFFGPTSA
PEKVTSTRALDFVKHLENRKGRSGGPLSGKTINRYLAVVSALMDHARFLG
WTKNTPAIPWQNETKGRLLYFKDGQDQPVLEALGARPLQVCFEILAASAM
RPTEFFTLTPDQIDIRNDWAWIRLWKTKNDDARSIPVDIELGRELRALLE
AGEGGCACRG
>RPA4277 conserved hypothetical protein
MRMTTAIIERARRTANGFKDLELAANEVIASGDAARSKEIALELLRSEVH
QARCVATFILGRLAADDGDALAVLKQRVSQDDDWRVQEILAKAFDRFCAD
TGYEAALPTIREWLSAASANTRRAVTEGLRIWTARPYFRAHPEAAVALLS
PLRNDDSEYLRKSVGNALRDISKKHPDLIRSEVATWTLDQQGVRQVHKLA
ARFLTSPAA
>RPA2214 possible helicase
MLTRATAKAPEQDDLFSEEVTLLFPALLALEGRLLGSAVRQQAVPSALTP
CRLKPFTVRRVSGFETNLKSGETLKIISAKTAASLDADLVLLVPGATTAQ
SIREALERGEGRWLHPKPIDPAALGAQAMLQRLTGVTASWEDAFHLREGR
AATDDKPLYPGLRRPQIGALHAALAHATRSTDPATIVMPTGTGKTETMLA
LNARQGFDRLLVVVPTDALREQIAAKFETFGVLKAQSCLDVSALFPVVTR
LTRIPTSIAEVDQIFDSANVIVTTMHIAGRAEPPVQEHMATRASALFIDE
AHHIGARTWASFRGLFAERTPPIPVVQFTATPFREDGRRVDGEFIYTYPL
KKAQQEGYFKPIRFEAVFGLDQLDADQAIIDKLGDVLAADLDAGLNHLAM
ARCSTIERAKHLHRLYTLAYPDYRPVIVHSQQSLKERRENLAALRRFDSR
IIVCVDMLGEGFDLPELKIAALHDHHKSVAVTIQFVGRFTRQDPRLGDAT
VIANTGVDDVDRSLAKLYAEDADWNALVEALSSAKIERQVRRAEMFKGFS
GDLSDIPLQTLEPKMNAVVYRTACDAWDPFQAEELYDAGIYLGMKLNAHK
RVAIFVTRAEEQARWTTAQQAVNVTWDLHMLHWDQASGLLYISSSAKGPF
DRLAKAVCGETARRVEGEEVFRSLHGFKRLILRNLGLTHHQGRGVRYSMY
MGVDVADGLDSAKSQSRIKNNIFATGFLDGMPASRGCSAKGKFWSSAKVR
DLTDWVDWCQDVGRTVNDPSITTDGVFKSAMRPCQINERPAVPPVAIHWP
ESLIMQIEERIEISFGDQPVSFTECDIELLDNARTGPLRFAVRSDDHSAE
FEIVFSDGGARYPQRSGPKATIKIGSKIQSLSESFADDSPQIDFGDGSLL
IYSHLYSLPEGETVEPYPVAKIEAWDWSKANIRVESQGTAKRTDSVQRTV
IEALLTDPDPYDVIFDDDGKGEIADVVALRITDSVVSATLFHCKYSGADT
PGARLSDLYEVCGQAQKSARWRDRPNRMLQHMLKREQKRRDRGLSSRIET
GSAAAIKKLKAGWQDYRFEYDVRIVQPGLSRKAIGEEGLHLLAGVETYLL
ETRGMRLRVIGSD
>RPA3836 Integrase, catalytic domain
MTPAAKRKAVAHLQTAFEMSERRACKAIGCCRMTVRYQTSRSDDAGLRQR
MRAIAHERRRFGYRRLHVLLKREGYLVNHKKLFRLYREEKLTVRRRGGRK
RALGTRAPMTVPVLPNDRWSLDFVSDQMTDGRRFRILTVVDDCTRECLAL
VVDTSLSGARVARELDRLVAERGKPKMVVSDNGSEFTSNAILTWADQSRI
AWHYIAPGKPMQNAFIESFNGRLRDELLNETLFTSLAQARVALRCWRADY
NDARPHSQLGWRTPSEFAATCNPRRDLALRYIESSTPAPATAHMGPSNHP
NELRPG
>RPA0074 Possible exonuclease V and helicase activity based on COG assignment
MSRVIPNEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVS
PERILCITFTKAAAANMAERVFTTLGHWVKLDDEELSAAIHATGVKTVGP
SLLAQARKLFACALETPGGLKVQTIHALCTRLLQQFPFEANVPARFSVLD
DRDQAELMQRASLDVLLRAAAAPESDAGRALAFAMTSAADVTFRDVVQEA
CMSRDRFMAWVAQAGSVERAMAQLSATLGVAPGDSCDAADRDIVDGPNLP
RSEWAAVAATFEGGSANDQAQGRRLRAALALTDAAQIEAYLQVFFTKDNG
LRKSLITKKLGDGVPGLAERLQREGARLAGLLERRRALALRERTRALLVI
AAQVAGNIAREKRERGLLDYDDLIDKTLAMLDSGAAGWVHFKLDRGVDHV
LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGVRRTIFAVGDEKQSIFSF
QGAVPKEFAEQRNELQRRFHGADKRFEKVAFNYSFRSGAAILQSVDHVFR
DPAIYRSIHADSTYPLHQSLADAGPSSIDLWPLEVPDDRQQIEGWQAPFD
AVSETSPEVRLADKVRAEIGALIARGTQTGPMGRRRPLSYGDVLILVRRR
GSAFDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLA
LAVVLKSPLFGLDDDDLFKLAWQRKGSLRAALADHAAGDPRSAAVQHRLE
TYAARAQAETPFGFYAWLLGGDGADSGRARILRRLGPEANDALDEFLELA
LSFEQKRAPSLQGFMAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAP
VVFLIDTTSSPADTQRLNLIRLPGGNAAPGSVAAMVWAGRKADDPHIVEQ
ARSAMIEETEDEYRRLLYVAMTRAADRLIVGGCMPGNRNEVRPHSWYDLI
SRGLESSGLVMQPVPPDGVIKRYCRPEDVIDETGAAVPSHEAVATPLPDW
LRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGTLVHRL
LQSLPEIAAADRPAAAGRFLARNASDWSEEDRAALAAQVLGLIADARFAA
VFGPGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAP
PRVEAEAPRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASA
LDAEQADLTVP
>RPA0770 Integrase, catalytic domain
MVTPAAKRKAVAHLQTAFEMSERRACKAIGCCRMTVRYQTSRSDDAGLRQ
RMRAIAHERRRFGYRRLHVLLKREGYLVNHKKLFRLYREEKLTVRRRGGR
KRALGTRAPMTVPVLPNDRWSLDFVSDQMTDGRRFRILTVVDDCTRECLA
LVVDTSLSGARVARELDRLVAERGKPKMVVSDNGSEFTSNAILTWADQSR
IAWHYIAPGKPMQNAFIESFNGRLRDELLNETLFTSLAQARVALRCWRAD
YNDARPHSQLGWRTPSEFAATCNPRRDLALRYIESSTPAPATAHMGPSNH
PNELRPG
>RPA0491 possible MgpS, ATP-dependent helicase
MPNLYSEAFTADRVPGAGVTAVLGPTNTGKTHLAIERMVAHPSGLIGLPL
RLLAREVYNKIVDKVGANAVALVTGEEKIKPSKPRYWVSTVEAMPRDLDV
SFLAVDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMRPMIQRLLP
GASIVTRPRLSQLEYAGDRKLTRQPRRTAIVAFSADEVYAIAELIKRQHG
GAAVVLGSLSPRTRNAQVAMFQSGDVDYLIATDAIGMGLNLDVDHVAFAS
DRKFDGYQFRRLTPAEFAQIGGRAGRATRDGTFGTTGRCAPFEPELVNAL
QNHSFEPVKMLQWRNAELDFASIGALQVSLAESPRHEALTRAPVAEDLRV
LDHVARDAEVREIAQGKAAVERLWDVCQVPDYRKIAPAAHAELVITLYRF
LMQKGRIPDSWFAAQVDQADRTDGGIDTLSARIAQIRTWTFVANRPDWLA
DPEHWQGISRDVENKLSDALHERLTERFVDRRTSVLMRRLRENTMLNTEI
GKTGEVIVEGHVIGRLDGFTFAPDAAEAGSDAKALQATAQKALAGEIDAR
AEKLSNAPDDQFILTSDGTIRWTGDAVARLVGSDDVLRPRLRIIADDRLA
GAPREAVQTRLDLWLKTHVEKILGPLFELGKAEDVSGIARGIAFQLIESL
GVLERAKIATEMKDLDQPSRATLRKYGVRFGAYHIYFPSLLKPAARALAS
LLWAQKQDNVDLAALSSAQHLAGSGRTSFPADKALDRDAYRTLGYRLCGE
RAVRVDILERLADLIRPALAWREGASGEKPAGAFDGRSFVVTQAMTSLTG
SAGEDFASILKALGYRMERRPAPPPAPKAAETASPATEEAAATSDMSAED
QAILAGAIAFEPSPTAEGDVAEAASTVDEQPAADEPAAVDQPVATAAEPA
AEPAAAETAEQPAADASEAPASEVTTAEASSEAASAEAAPAAKAEPELVE
VWRPGGRSDEHRPRHDRNRHRNRPQHGAPAGANEGESAEAKGDRSGGRRG
KGEFRRDRRDQEGEGVRREASAEGRPPRERFKGRDKFQDKHQGGKGGRDN
QGGGSHRQVHSSAPRERDRPMDPNSPFAKLAALKEQLTAGRKD
>RPA1841 conserved unknown protein
MTYPIAQLDGITEVAASKLKSVGIRTTEALLEAARTVKGRKALAAKTGFT
EQQLLQWANLADCMRVPGLGKAKADLLRAAGVSTLREFTHRNPARLAQNM
KEANLKRKLVRALPSEKEVGQLIEQARKLPLKITY
>RPA1309 possible transposase
MPCSDGSLVGNQGRGGQAGEGALVSAARAAVDLDVHESVLRKWAKQRGVA
PVQAVAGHGQMKPEQREIVRLRRKFAKLQTECDIPKKAAAFFAKEAT
>RPA2279 unknown protein
MSPQNWAAMIQRVLGIIAGVDRKTLQSCPASDKLWATHLGASLCLSFVVV
LGVSFHATGYMIDNIWTRLLVSTVIALTVLMFDRALCQSDWFYQGTLWNT
SAIQSRAEAKQTAWRFVRVGIRLTLSFGLAWVIAMFLELAIFSSTINEKI
EADRVVANQPVYDKIAAFEAGLNAEAKRRLADIEQLEALHRDALTEQPKP
EPTTQARTEDIEQQIRALATREAGIRADIAEIDKTIQRYIADMNAEEFGL
KATPNNSGRPGAGPRYEFARKQRQAFLAQRAEREAEIAQLHIRRDDLRAA
QAKITTDALAAREQERVAIKARADALQQRIDAARADLKQFEVDKAASVAD
FRKKVMSDSYFQEKKDKFDPLTRIAAYQELKNDPRDGATMTLFSWMTRCF
IIFLEIVPVVAKIFFSPPSVYAAKIQAQVERARQRIENNEDLDDEAPKPA
PAPAMAAITLPAMALDPVTVAQPQAQAPKPQAAPEPARAAEPPPAPPRPL
ETARGFEHALHDDEADYDEMRRRDDRRAYEWRRYGGRDSDGGYDDYDPRE
FERREFARRHDYDRYDERPRRAAARRSPPQFVARDYAIRDYGGRDFGEPE
YETSEIDVRNLIMPRRGSARREAYAVEPTARARVPADDRGPARSAGLEPV
AERSLRWPDGIPVDDLNTRELVRQVLADAGTAARAEPIRSEPAQAETTTR
VEPIRPVEPSPAEPVPSEPAVIEPVVSEAVATEPAATATASVAASATSTP
EPEPVLTVAEAVPVPPQALEPDVLPNVLTRARAVPAERPAPPPQTTASDE
AATAGDAHPEEIGTLPKFSADVEKLMTDAVELSRPRKKAAHPRREHHAEG
EAELPLEHKVRHETPPQA
>RPA1332 possible phage integrase/recombinase
MPRRIACLAAFRSTIAHRDVNALSVLGQQRRTTPLDLRRIGRIAPKPDPV
PEEASPRYNGQFSFQQRRLAMQSTEEIARSGHVIPWNKGKLIEPKPPLQT
KHVWAIRSKPLMEGRTRELAMFNLAIDSKLRGCDLVKLRIEDVAPHGLAI
DRAIVRQQKTGHPVKFELTEQTRDAVDAYLKSRRAEARGFLFPSRRHPDA
PMTTRQYARLTKEWVSGIGLDASFFGTHSLRRTKATLIYRRTGNLRAVQL
LLGHTKIESTVRYLGIEVDDALAMAEQVDV
>RPA3136 conserved unknown protein
MPVSRQTTRPSRGLLAIVAVFAMSTGSAAIAGPAINFLPHQALYDLSLVK
TRNNASISTVRGRILYNFSGNACEGYTSDFRQVSEIQSGEGKNTLSDLRS
SSWEDAAGKSYRFKIGTRMDDSKESDVDGMAERTGDHITVKLKQPVQKTF
ELDGATVFPTEQIERIIEAARAGKSLLNLSVYDGSDNGEKVYNTLTVIGQ
PIKGSGAVVSPDPSTNDDAMKSLTRWPVTVSYYDRDAKSATGEQTPVYAM
SFELYENGVSRSLVLDYNDFVLSGAMGKLEVKSDKPCK
>RPA0033 conserved hypothetical protein
MGVVLETIGKLIASYLQKEEPGYEPFTPSDPDHLRTIMEPGDVLLVEGNS
RIAGIIKYLTQSTWSHAALYVGPIDGVTEPDGEPHVLVEANIGEGVSSSP
LSRHLAYHTRVCRPVGLSYEDRHTVCRYAINRIGFGYDTKNIIDLMRYLV
PLPVPQRWRRRMIALGSGDPTKIICSALIAQAFEAVRYPILPKITKAGSR
AARREILHIRHSTLYMPRDFDISPYFEVVKPTIVNGFDYTALHWADKPKP
VVESDSPFASPIEGSESAPSLATQTAEADPALDLAGPPKLGAVA
>RPA3113 conserved hypothetical protein
MPALILPLIEAAVHWPVRGALLGLDLGTKTIGVAASDPDRKLATGVETIA
RKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGPRAQSTRAFARNLS
RLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFILQGAL
DRLAALRRAE
>RPA4488 Excinuclease ABC, C subunit, N-terminal
MPYYVYLLACGKHGTLYLGVTNDLVRRVHEHRSKATPGFSEHYGVGRLVW
FEIYHDAITAITREKQLKKWRRDWKVRLIENQNPDWVDLYPGICR
>RPA4520 NUDIX hydrolase
MSHVHDDATRALIAARCAAFPRHDDGLTPSGLKRAAVAIALVAAEDGSAA
FLLTRRSPRLRSHAYQWALPGGRCDDGETAPETALRELHEELGLALDAGD
VLGILDDYPTRSGYLVTPVVAWAAGSGPLAPNPDEVASVHQVGLAEIAPP
DVFDFTSIPESDRRVVRFRYEDDFIHAPTAALIYQFREVLAGRVTRVADL
EQPVFAWK
>RPA1273 possible deoxyribonuclease
MTTFTPVQDEALKAVGAWLKAKPGRNGTPLVFRLFGYAGTGKTTLAREIA
EGVSGEVKFAAFTGKAALVMRNKGCDDASTIHSLIYRTKESGVEQPSFEL
WDDAPASKAKLIVIDECSMVDEELGRDLMSFDCPLLVLGDPAQLPPIQGG
GFFTNAEPDVMLTEVHRQAQDDPIVRLSMDVREGRALERGRYGETEVVTR
DQLDPQRVMDADQVLVGRNNTRRAYNARFRQRLNIEDPFPVGGDKLVCLR
NNRKKALFNGGLWRVKSRSPIKTKIITMRVTPDEDFGGRLTKVSVRNECF
AGGIEDISWDQRKPYDEFDYGYVLTVHKSQGSQWDDVVLFDESFAFQDSR
ARWLYTGITRAAKRLSVVV
>RPA2215 possible ATP-dependent exodeoxyribonuclease (subunit A)
MTAATNALRDDAARRTAIGVHDRSILVEAGAGSGKTAVMAGRIAAMLAEG
IAPKSIAAVTFTELAASELLIRVRDFVADLAAGTIPTELRIAFPDGLSPN
HSANLAAAASVIDEITCSTIHGFCQRLIKPYPVEADIDPGASVMDRNQAD
LAFIEIVETWLREQLSGGEGGIIAEMVLHNPGGTVGLIHKIVANLRKRRT
VSAPPVSGLAPHLAAFHHAVDGLMEFIRTAPAVEEETAMLAERFAGMAAG
LDSGPVIETPVGLVRLLVTQPHPDLCTKTGSFLAYKKKGKWVEAAKREGL
AKTEGERLNIAADAHYAACCQAWQDLVQNVASRVLCDLIAQVQPVLARFR
DYKRSAAQLDFDDLIFAARDLLRDHDDVRRSLATRFAHVLVDEFQDTDPL
QTEIFWRLCGEPPAGVASADWSAFTIRPGALFLVGDPKQAIYRFRGADVS
AYVRARDAYLAQDPESVLAISTNFRSCAPILTYVNDRFEALLSSEGQPGF
TALDPFHADRGEALCVAALDVAVADENGKASAEQQRDGEADAIAQMCARL
IGGEMILDRRSGASRPCRPGDIALLAPTGSDLWRYEEALERHGIPVATQA
GKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEELLDIIW
ALPRAEDDPERLPRLDLGVELEHIAHPLARSTIETLQALYRQTNSTTPHD
LLSQAIDALRVRPILLERHRGQAERALANVDLYLSLTTSFAVRGLRAFAE
TMTAAWTDEARAVEGRPDAQEEAVALYTMHAAKGLEWPIVVPINTMTGIM
APESAVTDRDSDTFYCPVFGVKPVGYDAARDAEKAELDRERIRLWYVAAT
RARELLVLPRLDAAQSKSAWISLLDLSLAELPALDLSHLPPELDLAAGGE
ANDQTRDDFAAEAASIVARQRRLIWLAPSRDESADGPVLTPEAAEIWAAS
EAGQPDDEAVRPNVQGGRERGLILHKLLEEVLTGETPDDAGALSERARAL
IGEIGRPVMADPSQGLSPDELAGCVVRTLALPEIAELRPTLVPELAVYAA
VDVDGVEQATVGIADATSFDIAGKPTVVIDWKSDVQPTAETLNHYRAQVR
AYLDMTGTDRGLIVLVTTGQVIAVTPTTAPLAA
>RPA0894 putative transposase
MTIALPLAVAAGVDAGQRFLDVALAPSGQTFRMPNLAEGIAEIIARLERS
GVRRVVLEAIGPYAEPLVRALSVAGFEVGIVNPRRIKAFREAEGGRAKTD
RLDARLIARFALTMPETLRPLPTDTQLELKALSLRRRQLTEMIAMEKTRM
KQVRGTLLLDSHRAAIAALSAQCQAIEAELAKRIGDDAELRRVLHILKSI
PGIGERVATLLITDLPELGQRDRKAIASLAGLAPHVSQSGAAPPRAAIAG
GRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVALIAIARKLLV
TANALVKADTPYQGKTLDT
>RPA3220 AAA ATPase
MSPKRPQASDNLFAAAGLERDAPRPLPDRLRPRSLADVVGQDHILGPDGA
LTRMLQTRTLGSLVFWGPPGTGKTTVARLLADATELQFEQISAVFSGVAD
LKKVFDAARARREMGKGTLLFVDEVHRFNKAQQDSFLPVMEDGTVVMVGA
TTENPSFELNAALLSRARVLIFKPLDAAAIEQLFSKAEAAEGRKLPLDDE
ARAVLARMADGDGRASLTLAEEVWRSAREGEVFNAAQLQEILQRRAPIYD
KSADGHYNLISALHKSVRGSDPDAALYYLCRMLDAGEDPLFLARRVVRMA
VEDVGMADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAA
YSAYKSAMRLAKQAGSLLPPKHILNAPTGLMKNEGYGSGYQYDHDTPEGF
SGQDYFPETLGRQTFYDPPDRGFERDIRKRLDYWAKLRAAKGS
>RPA0075 conserved hypothetical protein
MHLFSVPSSAPFLRTTIAALVDGRLVEGFEARAAPERLADATLYLPTRRA
GRMAREIFLDVLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPA
LDGLPRRLLLAQLIASWAARLKPDDPAQAPLVVGGPASALALADDLARLI
DDMSTRGVDWSALGTLVPDAFDRYWSLTLDFLKIAGHAWPQYLKETDRIE
PAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPATAKLLTAIVRLPHGA
VVLPGLDIDLDNAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLDRMGV
TRRDVQQLGTPARHGRELLSSEALRPSSATAVWHDRLKDAEVDRLIGEGT
DGLTLIEAPNSEAEALAIAVVLREAREQGKTAALVTPDRALARRVVAALG
RWHLPVDDSGGDSLMETQPGIFARLAAETVLEGCEPTTLLALLKHPLLRL
GRAGYGWRGAIETLELALLRGPRPPAGCDGLAKEFAIFRGELAKLKRGEA
SALHPSEPRTRLSEPSLDEAQQLIAQLKAALAPLETVGPNPLDLCEIGAQ
HCAALKALTTDDDGIAEVFEGPQGSALLRAFDDLAAVGPASGVLVAARDY
GEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVEGVWP
PAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFITHAAKV
GGAPAVASRFLHRLEAVAGEDRWKAMKARGQTYLDYTHELDRPESVTPIA
QPAPRPPRIARPLKLPVTAIEDWLRDPYTIYAKYILRLSPLDPVDMSLSG
ADRGSAIHAALGEFTERYQDALPDDPVTALRQIGQKHFAPLMDHAEARAL
WWPRFLRIATWFAAWEQQRRTGVVQVQAERRGTLMIPLGGERNFELSARA
DRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGGFEDI
PAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKL
EGLVRRFEDEKQPYRSLVLSMWSQRYGTYDDLARIKEWSAAGGRGDASS
>RPA0032 possible Staphylococcal nuclease homologues
MSPYPRTNPVRISRLPWRSRLWPWVFVLGVAAGTMLPARHWLLHLPWLQP
PASLGIDNDSETVWRRAGNPTTRHPVDVLYTIDGDTFDARVHLWPGTDLR
TRVRLRGIDAPELKAQCACELRMAEAAADELRRLLAEGEVAIYNIGPDKY
QGRVVADVATKRTANVSNALLDGGYARAYGGGHRDGWCDGR
>RPA1671 putative serine/threonine protein kinase
MDEVTFEPGSTIDGFIIEEAIHRGGMATLFKVRRDDDPTPMVMKIPRIGE
GEDPAAIVSFEMEQMLMPRLSGPHVPKFVAMQDFSTQPYIVMERIAGEPL
LARLPELPLGYDEAVAIAAKIATAIADLHRQHVIHHDIKPSNIMFRPSGE
AVLLDMGLACSDQLPDLMQEEFRLPFGTAPYMAPERLLGVRDEPRSDLFA
LGVLLYFFTTGVRPFGETETMYGMRRRLWRDPHPPRKLRPDYPLWLQEIV
LRCLEIEPAWRYPTAAQLVFDLTHPSEVKLTTRSEKLKHDPLRTVLRRRF
NKELTRPRAVESMAAHLASAPIVAVAIDVAEGSGALNDALRTTASRILAT
LPSARLACLNVLKLGRMTIDRTLDEHGHNKHVDRLVQLRHWAEPLKLEDD
RLTVHVLEAVDPASAILEFAQASRVDHILIGARRSSVLRSLLGSVSAKVA
GEASCTVTIVREPQLASPRSGPRAGAQDA
>RPA1187 NUDIX hydrolase
MTGTQSASGSISSADFFDRAQRRLRFDVPAALTDAGVIPATGDQGNDQML
RTIAQERPIRPAAVLIPVVEHAEPTVLLTMRAAHLNDHAGQIAFPGGKID
ATDNSPLDAALREAEEEIGLDRSFVEPIGYLDVYGTSFGFRILPTVARVR
PGFELAINKSEVDDAFEVPLAFLMDPGNHQLHSKEFRGAQRSYYAMPFAE
RYIWGATAGILRALYERVCLP
>RPA2044 conserved unknown protein
MSASAPVTIHRVGQLDLWVGDYAWPFATARRSDIDAHFEHRRAEQPKLWN
GRVLMARRPQFDGPYFSAEFFETDFASFLCWREWEFPDASVFNGFGMGVI
RASDGAILLGEMGAHTSNAGRVYFAGGTPDPSDVRNRRLEMASSVAREVK
EETGLTRFDYQAADHWHCVEAGAFVAMLRILDVDQPGDALKARVEKHLAQ
EEQPEFSRMHLVRSKDDFLPSMPRFVTAFLTMLLRGED
>RPA1005 NUDIX hydrolase
MVEVDFPTTKGDKLRTPVLAAGGIVLRRGKDPLFAVVRMRKRNDWVLPKG
KLDHGETPRQAAEREVLEETGHVVAVHEFIGTLAYDSGGRSKVVHFWRME
AEARQTLPLMKDIRAVDWLPLDEALQRLSRSYEQAFLTEVGPLVLESAGH
LLSAAPTAPPPPRCPTSPLPTGDEIVTDLAEAPSLALEQPSEALEPQPPL
SMLQRLRRWLRGQSRS
>RPA2207 putative recombinase
MNLSESVTAEASPRPPVRAAQYVRMSTEHQKYSTENQAEIIAQYAARRGF
EIVKTYEDSGKSGLRLDGRLSLQQLIADVRGGQTDFKAILVYDVSRWGRF
QDADESAYYEFICREAGIAVQYCAEQFENDGSLSATIIKSMKRAMAGEYS
RELSVKVFTGQCRLIRLGFRQGGAAGFGLRRYLVDEHRQPKAVLNHGEQK
SLQTDRVVLRPGPPEEIEVVRRLYRMFVVQRRTETEIATALNDEGILTDL
GRPWTRGTVHQVLTNEKYIGNNVYNRASFKLKAKRVVNTPDMWVRGDGAF
EAIVERDFFEAAQRIIQERSRRFTDEELLGRLSALLVEKGWLSGLVIDEV
EDMPSSSTFRHRFGSLVRAYQLVGYAPSRDYRYIETNRTLRTLHPDVVAQ
VIADIGAAGGTVRRDPVTDLLHINDEFTASLVISRCHISPAGGLRWKVRF
DSGLRPSITIVARMQEDNAAIHDYYLLPWLDVGTTPNLRLAPENGILLDA
YRFDTLEAFFDLTRRVPLKVAA
>RPA2802 ATP-dependent DNA helicase
MSLPAPILDGLNPEQRCAVEHGAGPAPCPPLLVIAGAGSGKTNTLAHRVA
HLVVGGADPYRILLMTFSRRAAAEMTRRVERIARKVLGDRASALSGGLHW
AGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDLGFSKAD
SRFPAKATCLSIYSRCVNAGQPLDVVLGANYPWCAGWAAELKQLFAAYVE
AKQRHNVLDYDDLLLYWAQVMEEPAFAEEIGSRFDHVLVDEYQDTNALQA
RVLLALKPNGVGLTVVGDDAQAIYSFRAATVRNILDFPKAFDPPARVVTL
DRNYRSTQAILSAANGVIDLARERFTKNLWTDRADGARPLLVSVRDETDQ
ARYIVERVLDAREGGVTLKQQAVLFRTSSHSAPLELELTRRNIPFVKFGG
LKFLDAAHVKDMLALLRFVQNPRDRVAGFRVMLLMQGVGPASAQKALDTM
TAAADPLGALTALPAPPRAGADWRGFVAAVQELRSGDAGWPAEIERALIW
YAPHLDRIHEDAETRKADLVQLAQIASGYPSRERFLTELTLDPPDATSDQ
AGVPTLDDDYLILSTIHSAKGQEWKQVFVLNVVDGCMPSDLGTGTSAEIE
EERRLLYVAMTRAKDDLHLVVPQRFFTHGQNAQGDRHVYAARTRFIPERL
LPLFERTSWPRVTPEAAAAAQRGPRIDINSRMRRMWT
>RPA0289 conserved hypothetical protein
MVALRGKDATSFLARPDPGRPIVLLYGPDAGLVRERADALIAASLDDPKD
PFALVRLDGDELSAEPSRLVDEALAIPMFGGRRAIRVRAGSRSFVAGVEA
LIASPPRECRIVIEAGDIKPDNALRKACEKAATGAVAIGCYPDAEADIAR
LIDDELRGSNLQIAKDARAVLTTLLGGDRQASRNELRKLALYAHGKGEVT
LDDVITCVSDASDLKLDAIVDAAFSGKPVVVETEFAKAMVAGTYPGQIIL
AAQRHAAFLHKTSLVVEGGTPAAVVLDSGFPRLHFSRKAAAETALRNLST
TRLAQIIEQLASAALETRRQATLGAAIAQRTLLSIAVSARRRS
>RPA2586 3mg, possible DNA-3-methyladenine glycosidase
MLELYALRPAPAAPELASPMTKSRAPKPPSDGTHPALGPLLTRWFFARSV
HEVAPELIGATLLFGGAGGIIVEVEAYHHTDPAAHSYGGPTPRNQVMFGP
PGFAYVYRSYGIHWCVNVVCEPEGSASAVLIRALEPTHGLAAMRKRRGLD
EPRSLCSGPGKLAQALGITIADNGLPLDAAPFAIHRRTTTPEIVAGPRIG
ITKAADYPWRFGLKDSRFLSKPFPR
>RPA3120 DprA, DNA processing chain A
MDVGERSSDQGTTVLTEAQRIDWMRLIRAENVGPRTFRSLINHFGSARAA
LERLPELARRGGAARAGRIPSEDEARREIEAGRRIGVELVAPGETGYPTR
LATIDDAPPLLGVHALPEALAVMARPMIAIVGSRNASGAGLKFAGQLAAD
LGAAGFVVISGLARGIDQAAHRASLSSGTVAVLAGGHDKIYPAEHEDLLL
DIIQTRGAAISEMPLGHVPRGKDFPRRNRLISGASVGVAVIEAAYRSGSL
ITARRAADQGREVFAVPGSPLDPRAAGTNDLIKQGATLITSASDIVEAVA
SILERPIELPGREPEHAPPEGEPDTGDRTRILALLGPSPVGIDDLIRLSG
ISPAVVRTILLELELAGRLERHGGSLVSLS
>RPA2663 Mfd, transcription repair coupling factor
MKTPSRSPAEQLTPGKALTFANVAEGAEGLIIADLARAVAAKPKAPAVSL
TVICRDGPRMQQLARSLEFFAPDLEVLQFPAWDCQPYDRVSPHAGILAQR
VTTLAKLSRLTGSDKPLIVLTTVNAAVQRVPVREIIAAQALSVAPGNVVP
MDSIVAWLEHNGYSRASTVREAGEYAVRGGILDLFPAGLDQPVRFDFFGD
QLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAFGA
PHPDDQLYAAVSEGRRHPGMEHWLPLFQERMDTLFDYLKGTPVAIEPQSE
DAARERFKQIADYYDARREAMEQPGSGAIYKPLPPDRLYLTDSEWTARLE
GVALARLTPFALPDDTSDVIDAGARAGRNFAPERADSNVNVFETLVAHVY
ALQAARKKVVIALWSEGSRDRMASMLKDHKLVALTSVNSWRTVQATPRNE
TMLAVVGLESGFETDAFAVITEQDVLGDRLVRQRKASKKLDNFISEVTSL
STGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYANDTKLFLPVENIE
LLSRYGSDGTSVELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLR
EAPKLPIQPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTPMDRLVCG
DVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPV
NVGQASRLVSAKELSQVKKGIADGTTDIVVGTHALLGKSIKFKDLGLVIV
DEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIAS
PPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIDDLAEVKDF
LDKHVPEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERR
LKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQML
EEAITNLKAGIVDEPVADRWSPQITIGMPVLIPDDFVADLSVRLSLYRRL
ADLDTDEEIDNFAAELRDRFGPLPDEVRYLFKIAAIKAYCRRANVEKVDA
GPKGVVITFRDNAFAQPDKLVFFIKRHGDAAKVRPDMKVVFFQVWETPEE
RLMGTTDILKQLADLAENRKAA
>RPA3124 TopA, DNA topoisomerase I
MNLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDADFQM
IWEVDPKAASRLNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKR
ALKDQQVERVVFNAITKQSVTDAMKHPRQIDGALVDAYMARRALDYLVGF
TLSPVLWRKLPGARSAGRVQSVALRLVCDRETEIEKFVPREYWSLIATMA
TPRGETFEARLVGADGKKIQRLDIGTGAEAEDFKKAIEAANFRVATVEAK
PARRNPYAPFTTSTLQQEASRKLGFAPAHTMRVAQRLYEGVDIGGETVGL
ITYMRTDGVQIDSSAITQARKVIAEDFGNAYVPDAPRQYTAKAKNAQEAH
EAIRPTDLSRRPSDVSRNLDSDQARLYELIWIRTVASQMESAELERTTVD
IEAKAGSRVLELRATGQVVKFDGFLAAYQEGRDDDSEDEDSRRLPAMSEN
EALKREALAVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKD
RGYVRLEKKRLHGEDKGRVVVAFLESFFTRYVEYDFTAGLEEDLDRISNN
EVSWKQVLSDFWRDFIGAVDEIKDLRVAQVLDVLDEMLGPHIYPAREDGG
DPRQCPSCGTGKLNLKAGKFGAFVGCSNYPECRYTRPLASDSAGDADRVL
GTDPDSGLEVAVKSGRFGPYIQLGEAKDYAEGEKPKRAGIPKGTSPSDVD
LEMALKLLALPREVGKHPETGQPIKAGIGRFGPYVQHEKTYASLEAGDDV
HTIGLNRAVTLIAEKVAKGPSKGRFGSDPGKALGDHPSLGAVAVKKGRYG
AYVTAGGVNATIPNDKTEDTITLPEAIALLDERAAKGGGKAKKAPAKKAA
AKKASADGEAKPVKKAAAKKAKPKAEGAAASKARAPVAAKTAAKKAAKPK
DAAKSSAAKNG
>RPA1722 alkB, alkylated DNA repair protein
MTADLFDGLDDAPRRQDIAPGAALLSGFARANERELLAAIDAVVARAPFR
HMMTPGGHTMSVAMTSCGSVGWVTDRRGYRYSPNDPDSATPWPKMPAVLR
DLAQRAAADVGFAGFDPDACLINRYVPGAKMALHQDKDEADFSAPIVSVS
LGLPAIFQFGGMARSDKPRRYELRHGDVLVWGGPSRLVYHGVLTLKDGEH
PLLGRQRINLTFRKAL
>RPA0349 dcm, possible site-specific DNA-methyltransferase
MKVAGLFAGVGGLELGLHRAGHDTLVFSEIWDPAGAVLERRFGGVPNVGD
VASLKSLPADVDLMTAGFPCQDLSQAGKTAGIRGRKSGLVSHVFRLIDRS
RPKWVLLENVSFMLRLDAGSAMTRLVSEFEQRGYRWAYRVVNSLSFLPHR
RARVFFLASLEGDPADVLLVDDAEPAEPQTNLRSHAHGFYWTEGTRGLGW
GPDCIPTLKNGSTIGIPSPPAILLTNGEIVTPDIRDAERLQGLPADWTKP
AAQVTRASFRWSLVGNAVSTPVAAWIGKRLVKPGQFDPARDGAAVVKGNW
PKAARSDGEVRREVMISEFPKWAKRESLQDFLRHQPNLLSVRATAGFLSR
IEKSSLRFVPGFKDKVRAHLEHVRAIDSFVEPSRLLVAAE
>RPA3135 dinP, DNA damage inducible protein P
MSGGDPGQRTTPGFCRDCLADQRAEARRCAACGSPRLLRHRSLETLSLAH
IDCDAFYATVEKRDNPALADKPVIVGGGKRGVVSAACYIARTFGVRSAMP
MFKALALCPSATVVRPDMAKYVRVGREVRQAMRALTPLVEPLSIDEAFLD
LAGTERMHGMIPAKVLAKFAREVERDIGVTASVGLSCNKFLAKIASDLDK
PRGFAALDQDEAREMLAPRPVGFIFGVGPATASRLASRGFRTIADLQRAD
EIELMRQFGDEGRRLWRLARGIDDRKVVPDRGAKSISNETTFEDDIRDLA
TLEKILWRLSEKVSSRLKSAALSGSTITLKLKTADFRQRTRAQTIHAPTQ
MANRIFSVSREMLSKEVDGTAFRLIGTGVSALTEQTGPAEDDMLDRRSAH
AERAIDDLRKKFGDAAVIRGIAFDRAQKPQG
>RPA0001 dnaA, chromosomal replication initiator protein DnaA
MSNMEQDRWSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLSVPTRF
LKSWIQTHYSDKVLSCWQAELPEVNRVDLTVRSPVRCATPAKEVPAPVES
RRDEQRPSAERSNGATPVSANHDALGGSPLDPRLTFASFVVGRSNTLAHA
AAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTWAGNAGTERKVLY
LTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAEFC
HTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEDL
RLGILRSRVVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAH
SKLNNQPVTLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLL
SSRRTANVVRPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIE
GLVSKDTTLSDEVESLKRQLQE
>RPA3084 dnaB, replicative DNA helicase (dnaB)
MAASDSNVLKLAPEPGAPAFRTAPHNIEAEQALLGAILVNNDAFYRVSDF
LEPKHFFEPIHQTIFETAASIIRAGKVATPVTLKTFLAADLDLGGLTVAQ
YLARLAAEATTIINAQDYGRTIYELSLRRDLIGIGTDMVNVAFDAPVDFA
PKNQIEDAERRLYELAESGRYDGGFQKFSQALTTAVDMAAKAFQRDGKLS
GISTGLRDLDTRMGGLQHSDLIVLAGRPGMGKTALATNIAYNVAKAYRGE
VQPDGSTKTVNGGIVGFFSCEMSAEQLATRILAEQAEIASSKIRRGGISE
ADFDKLRDVSIELQSLPLFVDETGGLSIAQLTARARRLKRQKGLDMIVVD
YIQLLQGSSKKGDNRVQEVTEITTSLKALAKELNVPVIALSQLSRQVESR
DDKRPQLSDLRESGSIEQDADVVIFVFREEYYLQNKEPRPGTPEHEKWAT
DMELVHGKAEVIIAKQRHGPTGTVDLQFEGQYTRFSDLTDDSHLPERI
>RPA2924 dnaE, DNA polymerase III alpha subunit
MSNAGFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGG
LEFSDKLSGYGIQPIVGLELGIDFGDQDPNSRHGALATPARIVLLAAREQ
GYRSLMRLNSRAFLETPVNQVPHVKLEWLEGETDGVVALTGGPDGPISLA
MLTDPALAAQRCERLQQAFGDRLYVELQRHGTEAERRAEGGLIDLAYDKG
LPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRIQFTPDHRFKTRA
EMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAA
AAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYA
GYFLIVSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLF
ERFLNPERVSMPDFDIDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQA
RGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPITLKQAIEGEPKLQAARD
EDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLVPLYRDPKSDM
PVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI
DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPG
PMANIPTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMA
GYSLGDADLLRRAMGKKIRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLL
AKFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLEIHNTDKLS
EFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAGLKGVGMQAVQQI
VEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRARVFG
GADAIVAACQRNHEAATSGQNDMFGGLSDAPSIILPQLEPWLPAERLRRE
YDAIGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVS
RMERRTKTGNKMGIIGLSDPTGHFEAVLFSEGLAQYREVLEPGAAVLMQL
GAELQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKRLQPP
ETKVAGGNIALVLRLDPQTEVEFDIPGRYHVSPQIAGAIKAVTGVEHVET
L
>RPA1803 dnaE2, putative DNA polymerase III alpha chain
MSARYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLDAIGIADRNTLAGVV
RAFSEFDNEELIHKPKLLIGTRLCFADGTPDLLAYPTDRAAYGRLCRLLS
AGKLRAGKGECHLTFADLEAFIHERSPSIHELATVIHPPSASINQPSASI
HQFPTPSWPGLTRPSTPTSKVVLVSVDARVKPGHDGGKRVADNSQILLVV
MPSYRFQTKTIAIALERLTALNADAVWLGLTPYYRGDDKRRLARLRRIAA
VARVPCIATNDVLYHHPRRRALQDVLTCVREKTSIDKAGRRLEGNAERHL
KPAAEMARLFRHDPEAIAETLRFADRISFTLDELKYHYPDEPVPPGKTAQ
AHLQDLTEQGIKQYFPNGISDRLRATIAKELAIIERRGYAHYFLTVHDIV
RYARSQDILCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEP
PDIDVDFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKAL
GLSEDVTAALADTVWGSWGKGLNEMQVRQAGLDPHNPMIGRAVELATELI
GFPRHLSQHVGGYVLTQDRLDSYVPIGNAAMADRTFIEWDKDDIDAVKMM
KVDVLALGMLTCIRKGFHLIAQHKGVRFQLSDIKSEDDNAVYKMLQRGES
IGVFQVESRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRR
NGQEPVVYPSPSGEAGDKNELRQILGKTLGVPLFQEQAMRIAIEAAHFTP
DEANQLRRAMATFRNVGTIGKFEAKMIGNLVKRGYDATFAKNCFEQIKGF
GSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIV
GDARSNGVEVRPVDVSFSEGQCTLEERCGRHHAVRLGFRMIDGFRWADPD
EERVQLEAGEPPSDDWAARIVAARARGAFTSLEQFARITALPKRALILLA
DADAFRSLGLDRRAALWAVRRLPDDVPLPLFEAASAREQEDERAAPLPAM
PMAEHVVADYQTVRLSLKGHPMEFLRALFAAERVVTCREVSRSEQRASGC
WLRCAGVVLVRQRPGSANGVIFMTIEDETGIANIVVWPAVMEKYRKEVMG
ARLVLVEGKVQASAEGVVHLVAERLIDRSAEMGRLAEGLVRPALPDGADL
YEPLTSEKYNYEALNGDRRDTPDAPAQRHRHPRDVRILPPSRDFH
>RPA1287 dnaG, putative DNA primase
MRFSPQFLDDLKARLSVSEVVGRRVKLKKAGREWKGLSPFQQEKTPSFFV
NDEKQAWFDFSSGKNGSIFDFVMLTEGVDFPEAVERLAAMAGVALPVQSP
DTARQEQRRKSLYDVMELAANYFAENLASRAGARARGYLADRAILPGTQV
KFRLGYASNERYALKEHLGKHGVPVSDMIEAGLLSAGPDIPVPFDKFRDR
VMFPITDLRGRVIAFGGRALEKDVAAKYLNSPETPLFHKGDNLYNHAPAR
KAAHDGGAVIVVEGYVDVIALVTAGFPATVAPLGTALTEAQLQHLWKMAD
EPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPDDLARA
GGRLAVEEVIGAARPLADMLWAREVEGGLFATPERRAALEARINELSNGI
QDEVVRRYYRQDLAERLRAAFAPPGGYGGGFGGGFRGGGGGDSGRRFAPR
DGFPQGGGRFAPRGRPGQPAPMLGRGPYQIASPDLISSPIMRGQRSAMSR
REALILISLLNHPWLLDDHLEEIAALEFAHPEAHRLRAAIIAAFAQHHHR
GDDPVGQAEKLRADLVKAGLSEQLQRVERAITTSAVWGSGPKAAREDVLS
TWQQLVALHRQSHSLLRELKDAELALGDDGSEANMRWLNDVKARLAQVEG
TEALIEGFGESSGRFQRSV
>RPA0002 dnaN, DNA polymerase III beta subunit
MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLD
LEVTETLPAETATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAI
RAGRSRFTLQTLPESDFPDLAAGEMSHAFRLPASDVKRLIDRTQFAISTE
ETRYYLNGIYLHTAGSPKASSLRAVATDGHRLAQLDLTLPSGADGMPGVI
VPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLTSKLIDGTFPDY
GRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSV
TNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEVAVLKLADPG
SPTLIQDRDSKSALYVLMPMRV
>RPA0301 dnaQ, mutD, putative DNA polymerase III epsilon chain
MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPERDMP
AEAFAVHGLSSEFLADKPLFAHVADEFLEFIGDAPLVIHNASFDIGFINA
ELSRLSRAPVPRDRLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKH
GALLDAELLAEVYIDLIGARQSQLILADVPVEVAGAASESRRRQRPAPLP
NRLTDADLEAHRTFIATMGEKAIWPDYLPAGA
>RPA0615 dnaX, possible DNA polymerase III tau subunit
MSDSGLSATPPAAPEQPVSASAPAGAYRVLARKYRPNSFDDLIGQEAVVR
TVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNYELPDGSVKGPTI
HMPVHGVHCKAIMESRHMDVLEMDAASHTGVDDVRQINDSVRYAPASARY
KVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRC
QRFDLRRVEADVLMNHLSNIAQKEGVEVEPEALGIVARAAEGSVRDSLSL
FDQAIAHAAGVVRADAVRQMLGLADRTRVIELFDALARGDIAAAFAEFRD
QYDTGADPVVVLSDLAEFVNFVTRVKIVPAIADNVAFGETERVRGREFAA
KLSMRVLSRMWQMLLKGIAEVQGATRPAAAAEMVLVRIAYAADLPTPDEA
LRMLEQSGGGDAPALSGGGGSSSRGGASASLAPAPALSAPSAMMPRSAPT
MSAGPAPTMLRGGPDGAARSPVSAPAPAPEPPALKITTFPQLVALASEKR
DVMTRLALEADVRLVRIEDGRLELALEPSASRSLINDLGRKLEQWTGRRW
TVIVSNAPGEPTLRQQSMAQQNERERAAENDPRVQEVLARFPGAKLTVRR
LAPEPVEIESDMDDPSERIDDDD
>RPA3517 dnlJ, DNA ligase
MRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNASSP
TQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLDDVP
AIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNT
LKGKHIPATCELRGEVYMLKQDFLALNKRQEEANETVFANPRNSAAGSLR
QKDVTVTASRPLKFFAYAWGEMSDYPMEEPTQHKMLQWLDHAGFVVNPEI
TLCHSVEDALAFYRRIGEKRASLPYDIDGVVYKVDRLDYQERLGFVSRSP
RWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQPVTVGGVVVQNAT
LHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVMEKRP
AGAEPYHFPHKCPVCGSHAVREEGEAVWRCTGALICPAQAVERLKHFVSR
LAFDIDGLGEKQIELFHERGWVQEPADIFTLKARNAELKLEQLEGYGETS
VRNLFAAIDARRSIELHRLVFALGIRHVGEGNAKLLARHYGTLDAFLSAM
RAAADAQTEEGNTSEAYQDLDNIAGIGDVVAEAVVEFFAEERNIKALDAL
LAELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDEAKAAAERLGAKVA
GSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALIGN
>RPA0791 exoI1, similar to Staphylococcus nuclease (SNase-like)
MLPRLWPGRPRFSTIGEPVCGTGACREGRLMLKLNTWLLPLLLLLLPMTA
QAADISGVPKIRDGDHALIGKTRIRLAGIDAPGVDQLCLNPKGDRWTCGV
AARDALAQHTAGKSWTCHVLRVDKAGRSIAKCEVDGEDLGQWMVKNGWAL
AYVQYSHAYEGEEKAAREAKIGLWQGSFIAPWDWRVRSAKTQILGATKPP
KDARRILLASASGPVAPSPDCTIKGNVNKSGECIYHKPTSRWYAQIRMKI
SKGTRWFCSVEEAEAAGCRETRR
>RPA4563 exoI2, Staphylococcus nuclease (SNase-like)
MRRLIVMVLGLSLAAPALAAEAVVKDGDTLQLGDKVFRLEGVDAPELDQR
CVNQFADPSACGLEARDALVKLIGGRSVTCRDLGPDPVFKGRRLGTCAIA
GETDSLSRRLVQDGFALNAAASGKDRFAGDETKAKDERKGLWQGCFVAPN
DFRRWDKDAPLRGAACREDKHSELIEAMFPDQPAMLPGCTIKGKLARRAR
ITGNVGVYQLRGCPSYASLTKPNRWFCSEDDARAAGYRKAYNCRIKLTP
>RPA2599 gyrA, DNA gyrase subunit A
MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKS
ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDM
PAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNL
LVNGAGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPD
FPTGGIILGRAGIRAAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQ
VNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVVL
NQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFREQVVTRRTK
FLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPA
ADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEIS
EELDKLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQE
GEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREE
DFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPL
EQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGII
AMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGV
RGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVE
TPEAEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTT
GRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRV
AGRSTQGVIVFNTADDEKVVSVERIPETDDGENGNGG
>RPA0004 gyrB, DNA gyrase subunit B
MTEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSG
LHHMVYEVVDNAIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIHKG
EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLLLRVW
RNDKEHYIEFAHGDAVAPLKVVGDANGKRGTEVTFYASAETFTHIEYDFA
TLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVTEFVKYLDRNK
KPIVPTPVVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLA
GFRAALTRQITGYAEAGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQ
TKDKLVSSEVRPVVENVINEALAAWLEEHPSEAKIVIGKVVEAAAAREAA
RKARELTRRKGALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQG
RNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGREDFDL
SKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLY
KVTRGKSEQYLKDERALEDYLIATGLDDCAFKLANGEVRGGRDLLALVED
ARAIRSTLHNLHSRYNRSVVEQAAIAGVLSPRITTDIATANEAAAYIARR
LDALADEVERGWVGHFTEGEGFRFERTVRGVKEVAAIDDAMLGSADARKL
DEYAAVLQEVYPRPGVLRRKEAETAIHGPISLFEAVTDAGRKGVALQRYK
GLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDVVEPRRE
FIQENSLHATVDV
>RPA2742 himA, integration host factor alpha subunit
MAGRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLS
SFGSFLVRQKGQRIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANGAM
PMSTEESDENTAQSASGG
>RPA0535 hrpB, putative ATP-dependent helicase
MTRTFDTPLPIDDALDELTAALEASNTAVLVAPPGAGKTTRVPLALLDAP
WLRNQKIIVLEPRRIAARASAERMAKTLSEKAGERIGYRVRFGSKVSRAT
RIEVVTEGIFTRQILDDPELNGVAAVLFDEFHERSLDADLGLALARDAQQ
GLREDLRILVMSATIDGARVARLLGDAPVVESLGRAFPVETRYLGRRSDA
PLERQMAEAIAQALRAETGSVLAFLPGAAEIRRTETMLRERVQDPAVEIV
PLFGALDAAVQDRAIQPAPKGQRKVVLATSIAETSLTIEGVRIVVDCGLS
RVPRYEPDLGLTRLETVRASRAAVDQRRGRAGRIEPGVCYRLWDEPQTAS
LPAYTQPEILSADLSSLLLDLAQWGVADPSSLAFLDPPPQPALKEARELL
GELGALDPDGRITDEGRSLRAMALPPRLARMIVDAARHDCAKDAAEVAAI
LTERGLGGDSADLDNRRDQFRRDRSQRASSARQMAQRWATQAASSSPSPQ
DAGELSSGVLLAFAFPDRVAKNRGNGSFTLANGRGAAVEQTSALARAPYL
AVGELTGSAAQGRILLAAPIALSEIELHFGDQITDADEVSFDRSAMALRA
RRRRALHAITLSEAPLALTPSEQTARVLAEGLVVAGLDRLPWSKQLQQWR
GRVMFLRKAEGDPWPDLSDAALAETRENWLVPALFDKTGLKDFSASDLSD
ALMNLLPWELRARLDREAPTHFEAPTGSKLPIDYEAEQGPTIAVRLQELF
GLTTHPSVAGGAVPLVLELLSPAHRPVQVTRDLPGFWRGSYAGVRADLRG
RYPRHPWPEDPASAPPTRRAKPKGT
>RPA2953 hupA, possible DNA-binding protein hu-alpha (NS2) (HU-2)
MAKKAVAKSATPATVTLKHLAAALAEEHELSKKQTEAILGDMVTRITKHL
KKGERIRIVGLGILQVRKRAARMGRNPATGEQIQIKASKKVAFRAAKELK
EAI
>RPA0066 ihfB, integration host factor beta chain
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGA
FSVKHRPARAGRNPRTGAHVPVDQKTVPFFKTGKEMRERLNRDSGDDAPT
SDTA
>RPA0171 invA1, putative dinucleoside polyphosphate hydrolase (AP4A pyrophosphatase) (invasion protein A, NUDIX family, NUDH subfamily.
MARYEDLPYRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVD
PGEDTWKAAKRELYEETSVNSVEKLAEVPDWLIYDIPRTVAGRAWKGRYR
GQRQKWFAARFTGADSEINVVHPGGGHKAEFTSWRWEPMHNLPELIVPFK
RPVYERVVKEFSQLAAAV
>RPA0174 invA2, putative dinucleoside polyphosphate hydrolase (AP4A pyrophosphatase) (invasion protein A, NUDIX family hydrolase, NUDH subfamily.
MTSRPPIASLPYRRNVGIALFGSDGRVLIGRRFRDDGPEIILPGLEWQMP
QGGIDEGEEPRIAVMRELWEETGVTNAEMLGETDWVSYDFPPYEGPPHRL
AVFRGQRQKWFALRFTGSETEIDPLAVRNDMPPEFDSWRWERLDRVADLV
VPFRREVYREVARSFARFTAAQA
>RPA4371 mutL, DNA mismatch repair protein MutL
MPVRQLPETIVNRIAAGEVVERPASVVKELVENAIDAGASRIDIFSDGGG
RRKIVIADDGSGMTQADLALAVDRHATSKLDDEDLLQIRTLGFRGEALPS
IGAVARLSITTRHAAEPHAWALRVEGGDKTPIAPAALTQGTRVEVADLFF
ATPARLKFLKTDRTEAEAIREVVRRLAMARPDVAFTLAGEERAPVTWAAA
LPGAPGQLIRLGDILGADFRANAIEVRAEREGVVVEGFAAAPSLTKANAL
GQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVVALFVTLDAREVDAN
VHPAKTEVRFRNSGLVRALIVHALKDGLAREGRRTAANSASSVISTFRPA
SMPPANWDWRSSPSYPVGGSAAPSFAERAQAAFDVGAPSADIRPQEVTPD
LLDRPLGAARTQIHETYIVSQTRDGLIVIDQHAAHERIVYERLKASLEAN
GVQRQILLIPDIVEMDEATVERLVARAEELAQFGLVIESFGPGAVAVRET
PSLLGKTDASGLLRDLAEHMAEWDEALPLERRLMHVAATMACHGSVRAGR
VLKPEEMNALLREMEATPNSGQCNHGRPTYVELTLADIEKLFGRR
>RPA0084 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETVRRGLQPAMEGFRIDRAVAHRENLRFPLQKDFVARLTGQTV
TGLGRRAKYLLADLSSGDVLLMHLGMSGSFRVVEADGETRPGEFHYPRSE
DRTHDHVVFEMASGARVVFNDPRRFGFMKVFPRSEIETEPHLKGLGPEPL
GNAFDASLLAKACAGKQTSLKAALLDQRVVAGLGNIYVCEALFRAHLSPK
RKASTLANRKDEPTDHAVRLTEAIREVLGEAIKAGGSSLRDHRQTSGELG
YFQHAFKVYDREGEPCPTCGGTVQRFVQNGRSTFWCPKCQK
>RPA0512 mutS, DNA mismatch repair protein mutS
MTIRPDIALPPDAAPPPEAPAKMSPMMEQYHEIKAANPGLLLFYRMGDFY
ELFFEDAEIASRALGITLTKRGKHLGADIPMCGVPVERSDDYLHRLIALG
HRVAVCEQTEDPAAARARKSVVRRDVVRLITPGTLTEDTLLDARANNYLL
AIARARGSAGADRIGLAWIDISTGEFCVTECSTAELAATLARINPNEAIV
PDALYSDTELAPTLRELAAVTPLTRDVFDSATAERRLCDYFAVATMDGLA
ALSRLEATAAAACVTYVDRTQLGKRPPLSPPAREATGSTMAIDPATRANL
ELTRTLAGERRGSLLDAIDCTVTAAGSRLLAQRLAAPLTDAATIARRLDA
VEAFAVDSGLREQIRSSLRAAPDMARALARLSLGRGGPRDLANLRDGIRA
ADEVLVQLAQLASPPQEIASAMAALQRPSRELCAELGRALADDLPLLKRD
GGFVREGYEPALDETRKLRDASRLVVASMQARYADDTGIKALKIRHNNVL
GYFVEVSAQHGEKLMAPPLNATFIHRQTLAGQVRFTTAELGEIEAKIANA
GDRALGLELEIFDRLAGSIDAAGDDLRAAAHAFALLDVATALAKLASDDN
YVRPEVDESLAFAIEGGRHPVVEQALKRAGEPFIANACDLSPGPAQKNGQ
IWLLTGPNMAGKSTFLRQNALIALLAQVGSFVPAIRARIGIVDRLFSRVG
AADDLARGRSTFMVEMVETAAILNQASERALVILDEIGRGTATFDGLSIA
WAAIEHLHEQNRCRSLFATHYHELTALSAKLPRLFNATVRVKEWRGEVVF
LHEVLPGSADRSYGIQVAKLAGLPPSVVSRAKAVLAKLEANDRGQPKTLI
DDLPLFAITARAPAEAAPPSEAEQLIDAVKALHPDEMTPREALDALYALK
AKLPKAD
>RPA0594 mutT, putative mutator protein mutT
MNLLLVVAVALIDADNRVLIAQRPKHKQLGGLWEFPGGKLDPGERPEAAL
IRELDEELGITVKEACLAPLTFASHAYEDFHLLMPLYVCRRWEGLAMPRE
GQELAWVRANKLRDYPMPPADLPLIPPLIELLM
>RPA4485 mutY, adenine glycosylase mutY
MRARPAALLAWYDRHRRTLPWRAPPGATADPYAVWLSEIMLQQTTVRAVG
PYFDKFMARWPTVTALGEASLDDVLKMWAGLGYYSRARNLHACAVAVTRQ
HGGRFPDTEEGLRALPGVGPYTAAAIAAIAFSRRTMPVDGNIERVVSRLY
AVEDELPKAKPRIKALAETLLGPSRAGDSAQALMDLGATICTPKKPACAL
CPLMQGCTARLRGDAESFPRKAPKKTGTLRRGAAFVVIRGDQVLVRSRPA
KGLLGGMTEVPNSDWLPDQDEAAAKAQAPALKGVSRWHRKAGVVSHVFTH
FPLELAVYVAHAAAGTRAPTGMRWTQISTLSDEALPNLMRKVIAHGLGD
>RPA0343 nth, endonuclease III DNA-(apurinic or apyrimidinic site) lyase
MPKTTRRPAKPAAKTPAVSPAKPAKRTAAAKPKSVSAKPAPSRRGKSPRR
WSAAEVHEAFSRFAKANPEPKGELEHLNPFTLLVAVVLSAQATDAGVNKA
TRPLFAVADTPQKMLALGEDRVREYIKTIGLFRTKAKNVIALSQKLITDF
GGEVPNTREALETLPGAGRKTANVVLNMAFGQPTMAVDTHVFRVGNRTGL
APGDTPLAVELELERVIPAEFMQHAHHWLILHGRYTCLARKPRCEVCLIN
DLCRWPEKTVS
>RPA0341 ogt, possible Ada polyprotein (O6-methylguanine-DNA methyltransferase)
MAARAAADNISGMMNLAIADHQLIKPGARDSALADYDCVRRAIAFISQKW
KAQPTIEAIADAAGLTPDELHHLFRRWAGLTPKAFMQALTLDHAKSLLRD
SASVLDAALASGLSGPGRLHDLFVTHEAMSPGEWKSGGAGLSLRYGFHPS
PFGTAVIIASDRGLAGLAFADPGEEQAAFVDLQQRWPRALCVPDQEATSP
LAQRIFDPAQWRAEQPLRVVLIGTDFEVRVWETLLKIPLGKAVCYSDIAA
KISLPKASRAVGAAVGKNPISFVVPCHRALGKGGALTGYHWGLTRKQAMI
GWEAGQLRAE
>RPA4427 ogt1, putative methylated-DNA-protein-cystein methyltransferase
MPLSQHSHVLFDTAIGRCGIVWGVRGIVAVQLPQPTETQTRARITQRHPD
SVEAAPTADVQRAIDGIVALLEGAATDFADIPLDLDGTSAFQRRVYDIAR
GIPAGKTLTYGDIAKQLGGVELSREVGQALGRNPCPIIVPCHRVLAAGDK
PGGFSANGGVATKLKLLAIEGAAVNYTPSLFD
>RPA4762 ogt2, putative O-6-methylguanine-DNA methyltransferase
MLLTMAGTAYTIFDTMMGRCGIAWGSGGVLAVQLAESREIDTRRRLLRLC
PDTRESRAEAWIEPVIDGLSAALRGEPWDFSDVPLDLGGIPGFDCRVYAA
LRAIPRGETLTFAEIAKQLRSSGAVHAVGQAIRRNPFTLIVPCHRALAAA
GDTSGICANGGTITRRRLLSLEGALATSGPSLLDVLLPFAPPRQADR
>RPA2703 parC, DNA topoisomerase IV subunitA
MGKRLIPPEPAEIHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVH
RRILYGMRLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQD
FSSRYPLVDGQGNFGNIDGDNPAAYRYTEARMTDVARLLLDGIDEDGVAF
RANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNAAELCDAAL
HLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRA
KWEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDE
SAEDVRIVIEPKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKV
LGLAECLREWLDHLRDVLLRRSEYRKGQIEHRLEVLGGYLIAYLNIDKVI
KIIRTEDEPKPVLMKAFNLTEIQAEAILNMRLRSLRKLEEFEIRTEDKNL
RAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPE
HDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQS
FFAETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVT
VFVHTGGRKFLIASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALT
VVSEGDDSIAVIGDNRKMVIFPLDQVPEMTRGRGVRLQKYKDGGLSDIAT
FSSKQGLGWRDSAGREFSATMKELAEWRGNRADAGRLPPKGFPKSNKFGR
SIA
>RPA2486 parE, DNA topoisomerase
MAKALKASSKSKSGDDLFEGAPKSAAPKAPAKPSGAEDGYTAADIEVLEG
LEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTAD
GFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGL
HGVGVSVVNALSSRLEVEVARGQQLHRMVFERGHPKGKLESLGKVNNRRG
TRVRFKPDTEIFGAKAAFKPQRLFKMARSKAYLFGGVKIRWKCDPELLKG
IEDVPAEDEFHFPGGLKDFLGAAIHNDTLVHPDIFAGKSGRNGAHGACEW
AAAWTADADGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERAGQGK
RASSITSEDVMVGAAIMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIKD
PFDHWLSGNPVQANKLLDFVIERAEERLRRRQEKEISRKTAVKKLRLPGK
LADCTSTAAEGSELFIVEGDSAGGSAKQARDRSTQAVLPLRGKILNVASA
GKDKVVANAQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDADVDGAHIA
SLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKEELLK
KEFNANAKVEVGRFKGLGEMMPAQLKETTMDPAKRTMLRVVLLPDDRDGT
ANSVERLMGTKAEARFAFISEKAEFASDELLDV
>RPA4723 polA, DNA polymerase I
MPKTTKSAAATPAASSVTPPAPVGVKPPGKGDHIFLVDGSSYIFRAYHAL
PPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLAIIFDKSEVTFR
NHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIAT
YVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFG
VPPNKVVEVQALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPE
IKQPKRREALIENAEKARISRKLVLLDDHVQLEVPLEELAVHEPDARKLV
AFLKAMEFTTLTRRVADYAQIDPSDVEAETALKSAVPPLAKSAAASGDLF
AGQEPSPQPSPASGGGSALASGQGGPLNAGRGRDGRPGVVLSPEALVAAR
AEAARKIPVDRTAYKTLRSLDELHGFIARIHDTGIVALETVATSIDPMQA
ELIGLALALGPNDACYIPLLHKQSGDGDGLFAAGLAPDQIGPRDALDALK
PILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHA
LDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLR
LARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSAD
FAQTAARIEAEIRELAGEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWS
TSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHT
TYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYS
QIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRA
KAINFGIIYGISAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRD
FCRNHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIR
RAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRAVMQDA
PFPAVILNVPLQVDARAADNWDEAH
>RPA1036 polN, possible phage DNA polymerases
MTPDPAPSLRQLLAFYLDAGVDCALAEDPINRMLDDAPEPAAREAAPEPR
PIVKPALHAKPPPPLAFGAPPASPDAAIISAREAAATAPTLEALRELMQR
FDGCALRATATQLVFADGNPQAKVVFVGEAPGRDEDIEGLPFVGRSGKLL
DLMLAAIGLNRGNVYIANVIPWRPPGNRTPTPQETQICLPFIRRQIELVN
PDLLVTLGNPSTQALLGTRDGIMRTRGRWFDYDTGTRTIRALPTLHPAYL
LRQPTYKRLAWQDLRAIATAIAATSN
>RPA0181 priA, putative priA family helicase (primosomal protein N', replication factor Y)
MDDLPTSSPASHAPASVVDVLVPVAIDQAYSYRVPRGLSLKPGDVVAVPL
GAREVLGVVWAENPNPDPRLHNRLKDVAEKLDVPPLRDELRRMVDWVSTY
TLSARGMVLRMCLRMGEHLGPERQRMGVRLVGSPPQRMTPARRRLLEILS
DGLLHGKSDVAKEAGVSPGVIDGLVDEGTLQVEPMPRENPAPEPDPDFAP
ADFSPEQARAAETMRGLVTAGGFQAALIDGVTGSGKTEVYFEAVAEVVRQ
GRQSLILMPEIALTGQFLDRFAQRFGVRPLEWHSELTPRTRARNWASIAA
GEARVVVGARSSLFLPYADLGLIIVDEEHDQAYKQEDGAHYHARDMAVVR
ASIAKIPIVLASATPSVETEVNARKGRYTRIPLPSRFGGQHMPQIEAIDL
RREPPMRGRFISPRLAEQIGFAIERGEQALLFLNRRGYAPLTLCRACGHR
FACTICDAWLVDHRFRQRLVCHHCGFSMPRPPACPHCGAEGSLVAVGPGV
ERLQEEAANLFPNARTMVLSSDLITSIETMRAELNEIAEGRVDIIIGTQL
VAKGHNFPRLNLVGVVDADLGLSNGDPRAAERTFQLLNQVIGRAGRDQGR
GVGFLQTHQPEHPVMKALIACDREAFYASEIDIRERTLYPPFGRLASLII
SAGDRPTAEGFGRQLASAAPFDERVQVLGPAEAPLAVIKGRYRFRLLVKS
VRGFDLSNYLRSWLAKGPKTKGNLKLEVDVDPQSFL
>RPA0385 radC, possible DNA repair protein RadC
MDMPTDNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELV
LFRALPRRDVKPIAKELIARFGSFAEAVHAPAERLREVSGVGDAAIIEIG
LIAAAAARVTKGQVKQRTVLSSWSAVIDYCRTTMAFADKEQFRILFLDKR
NQLIADELQQVGTVDHTPVYPREIVKRGLELSATAVIMVHNHPSGDPTPS
QADIQMTKSIVAIAEPLGIAVHDHIIVGKNGHASLKGLRLI
>RPA3851 recA, recombination protein recA
MAAPTALRIVEGSSMDKSKALSAALSQIERQFGKGSVMRLGKNDRSMDIE
TISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHCVAEAQKKGG
ICAFVDAEHALDPVYARKLGVNVDDLLISQPDHGEQALEIADTLVRSGAI
DVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM
VIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVV
GNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSG
AWFSHDSQRLGQGRENAKAFLKANPDMTAKIEAAIRQNSGLIAEQILAGS
PESDADGEEPMEE
>RPA0003 recF, putative RecF protein
MSFRARTSSMTAARITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTN
CLEAISFLSPGRGLRRATLEDVANHEGDGSWAVSTEIEGALGLATLGTGI
EPPRGDTTTTRRCRIDREPVGSAAAFGDHLRMVWLTPSMDGLFMGAASER
RRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDVRNADSHWLDAIERE
TAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSE
PATAVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDAS
TGEQKALLIGLVLAHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTEL
GKLGAQVWMTGADPMAFAEIGPAAGIFDVENGQIRPRG
>RPA2662 recG, ATP-dependent DNA helicase
MRPALLNPLFAPVTSLTGVGPKQDKLFRYLLDRDDTPRLADLLLHLPTSV
IDRRARPKIRDAVPGTVVTLEVTVDRHRAPPPGRSRAPYLVHASDDTGDV
VLTFFRAKPDFVQKLLPVGAKRYISGTGQLYDGTLQIVHPDRVVDEEGFA
KLPQIDSVYPLTEGLAIGSLRRAVAQALTKLPALPEWISPEVLRRCRFPS
FADALKHVHIPDQPTDILPDGPYWSRLAYDELLAGQLALALVRAQLRRPA
GSRNAGDGRLRHKIIDALPYALTNSQQQAAAAIAEDLRQPVRMLRLLQGD
VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAPLAERAGMQ
VAILTGREKGKERREILERLAAGEIDFLVGTHALIQDDVIYKSLALAVVD
EQHRFGVRERLALTSKGADVDVLVLSATPIPRTLVLTYFGDMDVSELREK
PAGRQPIDTRTLSDTRLPEVIDGIGRAIAAGKRVYWICPLVEESENVKLT
DAEQRFESLRQRFGDHQVGLVHGRMRGSDKDLVMGQFARGEISVLVATTV
VEVGVDVPEASIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYREPL
GELSGARLRVIRDTTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARSE
VHAQLITQARDEALRILKDNPKLEGPSGEALRCLLYLYERDEAIPLLGAG
>RPA2508 recJ, putative single-strand DNA-specific exonuclease
MLRFARNDGQWVSPAAFLAVCASGASCLSALTMTPPISVLPAETVPAFLG
VTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVE
DFLEPTIRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATS
SALLAWHLRHCGLDPLIHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDC
GTTSLEPLAEARRLGMSVVVIDHHQCGDELPDVDALINPNRPDDLSGLGH
LAAVGLVLMTLVAVNRELRHRGFWTTERPEPNLLDMLHHVALGTVADVAP
LVGLNRAFVAKGLIAMRRRDHVGHTALMDVSRLNGPPEAWHLGFMLGPRI
NAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAE
AEAMASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEP
GGIGTGSGRSISGVDLGKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAE
FRAWLETTLAGDVAKSRHVNELYIDGAVSARGVTTDLAATLNRAGPFGAG
NPEPIVALPAHQLIYADEVGQAHLRLRFKAGDGAIVNGIAFRSVGQKLGN
ALTENRGQTLHVAGSLSVDRWQGAERVQLRVIDVAVPDAGPTMIR
>RPA3519 recN, putative DNA repair protein RecN
MLARLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRG
DAALVRHGAEHGQVTASFDVAKTHPAFAILKANGLDDREVDESGELILRR
VQLADGRTRAFINDQSVSVQTLKAVGATLVEIHGQHDERALVDAATHRRL
LDAFAGLEKDVVSLEALWEGRRTARAALDAHRAGMERAAREADYLRHAAD
ELKQLAPQDGEETSLAERRTTMMQGEKIAADLREAQEVVGGHHSPVAALA
SAVRRLERRAGTAPQLIEPAVRAIDAAINALEEADQHLNAALAAADFDPL
ELERIEERLFALRAAARKYSTPVDSLAALAAQYVADVALIDAGADRLVAL
EKAAAEADARYGAAAAKLSAARAKAADKLNKAVGAELAPLKLERAKFMTQ
VEADEAAPGPQGIDRVEFWVQTNPGTRPGPLMKVASGGELSRFLLALKVV
LSDKGSAPTLVFDEIDTGVGGAVADAIGARLARLASKVQVMAVTHAPQVA
ARADQHLLISKAALDKGKRVATRVAALEQDHRREEIARMLAGAEITAEAR
AAADRLIKAAG
>RPA4826 recQ, DNA helicase
MIAPVSRHTDDDLDARALSVLNHVFGLPSFRGQQEAIVRHVADGGDALVL
MPTGGGKSLCYQLPALLREGCGVVVSPLIALMRDQVAGLLESGVRAAALN
STLSYDEANDIEQQLLKGELDLLYVAPERLLTPRCLSLLARAKISLFAID
EAHCVSQWGHDFRPEYVGLSAIAEKFPNVPRIALTATADALTRREIAERL
SLTDAPCFVSSFDRPNIRYSIVDKQNAPAQLKAFIDDRHRGHSGVVYCLS
RAKVEDIAETLSKSGLTALPYHAGLPPDVRARNQDRFLNEDGIVIVATIA
FGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSEAWMAYGLSDI
VQQRRMIDESSGSDAFKRVSMGKLDALVGLCESTGCRRTRLLGYFGETAQ
HESCGNCDNCLTPPKVIDGTVPAQKLLSCAYRTGQRFGAQHLIDVLLGRL
TDRVTQFGHDKLSVFGIGGEFGEKQWRAVIRQLVSLGHLAPDSEAFGALK
LTETSRAVLKGETQVMLREQTGRPPRAKSRRGDLVGGAQRETSGDPALFA
ALKAWRSEVAKARGVPAYVVLHDATLDGLAAAKPRTLDELRGIAGIGDKK
LDHYGAALLAVIGERR
>RPA0617 recR, putative recombination protein recR
MAGAAGPEIERLIQLLARLPGLGPRSARRAALHLIKKRDALMAPLASALQ
VAIDKIEVCSTCGNIDSQNPCTVCTDPRRDSSIIVVVADVADLWALERAS
ATNGRYHVLGATLSPLDGVGPEDLTIDALVKRAHDPGVAEIILALNATVD
GQTTAHYVTDLLQDANVKVTRLAHGVPVGGELDYLDEGTLSAAMRQRTLF
>RPA4541 rlgA, DNA invertase gene rlgA
MTTIGYARVSTTDQNLEIQQAALRAAGCDLVRSEKRSGTTRTGRAELQTV
LDFLREGDVLMVTRIDRLARSIGDLQDIVRAVKARGATLRATEQPIDTST
AAGKAFLDMLGVFAEFETNLRRERQLEGIADAKARGVYKGRKASIDAAAV
KALKAQGVGPSDIARRLNIGRASVYRVLG
>RPA1034 rnh2, possible ribonuclease HII
MIRDTKQPIKVPAKPASRSGGKAKTVKPKTVKPKAVKAADGKAASAKAST
SKAAVSKTSAKAAAAKPASAKGLKGVIAMAPPSFRRERALIKRGIWPIAG
CDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKREALFEEICAT
AQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRDRLAT
QCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGY
GVPEHLDALARLGPTVHHRRFFAPVAAAWQKIEGAPQPQIRDLFEADVTV
EATA
>RPA1100 ruvA, RuvA; Holliday branch migration protein
MIGKLKGIIDSYGEDYVILDVQGVGYQVHCASRTLQALPSPGEAATLSIE
TYVREDQIKLFGFRTDTEREWFRLLQTVQSVGAKVALAVLSTLPPHDLAN
AIALRDKAAVARTPGVGPKVAERIVTELKDKVPALSAVDPAVVKLSGAID
DNRAPRAVADAISALVNLGYGQPQAAAAVATASRTAGEDAETAQLIKLGL
KELSK
>RPA1102 ruvB, RuvB; Holliday branch migration protein
MTDPSRLVTPERRGDDLGDAALRPQNLSEFVGQQQARANLQVFIDAARKR
KEALDHVLFVGPPGLGKTTLAQIVARELGVGFRATSGPVIAKAGDLAALL
TNLEERDVLFIDEIHRLSPSVEEVLYPAMEDFQLDLIIGEGPAARSVKID
LSKFTLVGATTRAGLLTNPLRDRFGIPIRLNFYTIEELESIVTRGARVLG
TPITADGANEIARRARGTPRIAGRLLRRVRDFASAADAEAIDRAIADHAL
GALEVDSAGLDAMDRRYLTTIALNYGGGPVGVETMAAALSEPRDAIEDII
EPYLIQCGYLQRTPRGRLLTDHAFRHLGLAAPSRDPAQFGLFGDTGDQE
>RPA1099 ruvC, RuvC; Holliday junction nuclease
MTAVSIRRPIRILGIDPGLRRTGWGVVDSDGNRLVYVACGSVEPRDTLPL
AERLLAIHDGLAKVLAAHAPAEAAVEQTFVNKDGAATLKLGQARGVAMLV
PAMHGLLVAEYAPNLVKKTVVGAGHADKTQIQMMLKILLPKADPKTADAA
DALAIAITHAHHRGAAQRLKAVGA
>RPA2814 ssb, single-strand DNA-binding protein
MAGSVNKVILVGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKE
KTEWHRVVIFNEGLCKVAEQYLRKGAKVYIEGQLQTRKWTDQSGAERYST
EVVLQNFNSNLTMLDGRSGGGGGGGYGDDNSGGDFGSSGPSGGGGARRPM
PASSGGGRSDMDDDIPF
>RPA1067 tag, possible 3-methyladenine DNA glycosylase I
MTRGPLAGADGLMRCPWPGDDPLYVAYHDTEWGVPEYDDRALYEKLILDG
FQAGLSWITILRKRDNFRRAFDDFDPAKIARYDADKVAALMNDVGIVRNR
AKIEGTIGSAKAWLKIQEEGPGFSKLLWDFVGGTPKVNTFKTTTGVPAST
PLSVKISKDLSARGFKFVGPTIVYAFMQAVGMVNDHLVDCHCHATCGQMK
KPARRSAAPAKRAPLRQR
>RPA1799 ung, Uracil-DNA glycosylase:Phage SPO1 DNA polymerase-related protein
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDVAGLA
PHAGTFAEMAAPFIHPAQSPSPAQTFNVPARFVELAHIAILHRDPQRFAY
LYQLLWRLRANPELMQVATDPDVARLQAMAKAVRRDEHKMHAFVRFREIG
REPKSRYVAWFEPEHHIVELAAPFFARRFADMEWSILTPDACAHWDGHAI
AITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTRAMQAEMPKKYWRN
LPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLA
HLREEAKDCRACDLWKDATQTVFGEGPQHATVMLVGEQPGDKEDLAGQPF
VGPAGQMLDRALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEI
KACRQWYERELAAVQPLLVVAMGATAAQSVLGRITPINKTRGHLIDRDDG
PQVLVTVHPSYLLRLPDADAKAREYARFVEDLKLIAAHLKKAHAA
>RPA2816 uvrA, excinuclease ABC subunit A
MDEVIKAKRQTPAASSRTAITIRGAREHNLKNVDVTIPRDKLVVFTGLSG
SGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAIS
IEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPYSPATGLPIESQTVSQ
MVDRVLALPEGTRLYLLAPVVRGRKGEYRKELADWLKKGFQRVKIDGAFH
ELAEAPTLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETALKLAEGLAVI
EYADAPAAPPTAEPGQDEPADKKKKADKKVAKIHDKSGAERILFSEKFAC
PVSGFTIPEIEPRLFSFNNPYGACPECGGLGIEQHIDADLVVPDKELTLR
KGAIAPWAKSSSPYYLQTLTALGKHYKFTLDTKWKDLPKKVQNVLLHGSG
DDEIKFSYEDGVRSYDTKKPFEGVVTNIERRFRETESEWAREELGKYFSD
VPCDACHGHRLKPEALCVKVGGKHIGEVSELSVKAAGDWFAKVPEVLNKQ
QNEIAVRILKEIRDRLSFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQI
GSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDEDAI
LLADHVLDIGPGAGVHGGHIIAQGTPAEIMRNPKSLTGKYLTGELSVPVP
ERRPPNHRRTLKLVNARGNNLKNVTAEIPLGLFTCVTGVSGGGKSTLLID
TFYKAIARKLNNASEPPAPYDRIEGLEHIDKIIDIDQSPIGRTPRSNPAT
YTGAFTPIREWFAGLPESKARGYEPGRFSFNVKGGRCEACQGDGVIKIEM
HFLPDVYVTCDVCKGKRYNRETLDVLFKGKSIADVLDMTIEEAAEFFKAV
PRVRETFKTLQRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTL
YILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVID
LGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFLKPVLEKKGPAKALKRKA
DEAAE
>RPA4343 uvrB, possible excinuclease ABC subunit B
MEALGVKATAEALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVR
FVLKSDYQPRGDQPTAIKELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIE
ATQRPAIILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPR
TDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETY
TAMTFALKRGERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVIDIFP
AHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRP
TLIQAIQSIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCA
GIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVSIPQIGAMFKGD
FRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPPTVAVSATPAAWELNES
GGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAARGYRTLITVL
TKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGIN
LLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DQMTGSMQRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERD
HVLVEIGDGKGAGFTDDAAVIGHNFEAVLADLETRMREAAADLNFEEAAR
LRDEVKRLRATELAVIDDPTVKQRKVADKAGSYAGAKRYGDAANLPADAG
KGGRGKSGSRGGAATSPSPLRGGSAEGRGGGAVSTASKVHKPDLDEMGIA
GFHEFKKVQRPKPRKPTLDEMGPGTESKIYQPTSSREAGPEFGPSPRSTG
GAPGKRGGWKKR
>RPA1171 uvrC, putative excinuclease ABC subunit C
MIHDPAEPPAAAAEPPLDTASPDGAAPVADTRPAAGNQDIDAATASLAVE
EDDEARLPEVEDEPEAEPAQAGAGPMAVGRSAIARAVRLAPTSPGVYRML
NAERDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVISTTTE
TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITSDHWAPQILKHRGAQS
RPGRYFGPFASAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRR
CAGPCTGEVDFPGYSELVREATDFLSGRSRAVKELLAAEMEKASGELEFE
TAALYRDRLAALSAIQSQQGINPRTVEEADVFAIHQDGGYSCVEVFFFRT
GQNWGNRAYFPRAEKSFTPAEVLGAFVAQFYDDKPPPKLILLSHEIEEAE
LLADALCVKAGHKVEITVPKRGEKKELVAHAQTNAREALGRKLADTATQA
RLLENLATTLGLPKTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYR
KFNIRSEGLTPGDDYAMMREVLQRRFKRLVTSQAEGDGEAAAKAKPKDDD
VPQWPDLVIIDGGRGQLNAAREALSGIGLTDQVTLLGVAKGPDRDAGRET
LFLPDRDAIKLEPRDPVLYFIQRLRDEAHRFVIGSHRTLRKKDIREAGLQ
EIPGIGPTRKRALLLHFGTLKEIERASIADLGKVPGISAESAKRIFEFFH
ARPD
>RPA3506 uvrD, DNA helicase II
MTDPTKRQPLDLSSYQPAAGGIAARARAAAGPAYLSGLNPEQREAVETLD
GPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKL
RLGQMLGQAVEGMPWLGTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIR
LLKQLLAADNIDDKRWPARMLAGLIDGWKNRGLTPSQVPAGEAAMFGNGR
GGKLYAQYQERLKILNAADFGDLLLENIRLFREHPDVLRSYQNRFKFILV
DEYQDTNVAQYLWLRLLSQTPSSSSLPGSTRQSISSQEDGSPGLAASRRP
GDDVETSGNVVASTSAPPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFP
GAKVIRLERNYRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGEMVTVTG
AWDSEEEARAIGEEIEQLQRQGHALNEIAILVRASFQMREFEDRFVTLGL
PYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDAT
VQMLHDHARKRRIPLFDAARMVIDTDELKPKARGSLRGLIESFERWQVQR
DAVAHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENL
QGFLEHISLVMDREGGADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPH
QRALDEQGRAGLEEERRLAHVGITRARKRAKLYFATNRRIHGTWNTTIPS
RFLDELPAANVEITESKGGSGWGGMSGYGPSRFDNVESFGSSYSTPGWQR
AQAQRGRSGGGSNGGRSGGFGESSSSYSSGSTRRAPFTIEGELVAKSTGT
ESAFSLKDRVFHQKFGYGHVTKIDGNKLTIVFDKAGEKKVVDSFVERA
>RPA0350 vsr, putative patch repair protein
MTSPGFEKPTDPARSALMRRVRQTGTKAEDEVAAILRQSGLRFRRNVKSL
PGSPDFANKTNQWAIFVHGCFWHRHEGCPRTTTPTRNRDFWLAKFAANVN
RDTIKARLLRAMGFKVLTIWECETRNPSNVRRRLQRLR
>RPA0182 xerC, putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC)
MIAASSPRHCEEQSDEAIQRPNALSSWNCFASLAMTAVAHHPMTDELAMA
PSKSAPPPLELSCAAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQF
LQFLAGHWGGEVTLGRFARLEATDVRAFMAARRADEIAGRSLMRALAGMR
SFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRLADADERAGE
ERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDTLIVHGKG
NKTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLA
MERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQ
VYTGIDTERLLEVYNSAHPRA
>RPA1161 xseA, putative exonuclease VII, large subunit OB-fold nucleic acid binding domain
MARLQTPQALANVGEFTVSELSQALKRTVEDTYGHVRVRGEITGFRGPHS
SGHCYFALKDEGAKIEAVIWKGVAGRMRFKPQEGLEVIATGKLTTYPGSS
KYQIVIEALEPAGVGALMALMEERKKKLAAEGLFDEARKQLLPWLPEVIG
VVTSPTGAVIRDILHRLEDRFPRRVLVWPVRVQGEGSAEQIAAAIHGFNA
LPEDGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAADSMIPLISAVGH
ETDVTLIDFASDKRAPTPTAAAEMAVPVRAELFVEVGGLARRILSSWQRG
QDFRRNELRAAARALPGASDLLAIPRQRLDGASAALPRALRASTNAHHRR
FAAAAAGMTLKVLRAQVAHSAHRLDSAGTQLQRCARATLRHRRERFEGLA
VRLQASKLANQQAQRMRIAREQERLQRLAERARRALITLLERRQARVDAT
GKLLTALSYRGVLARGFALVRDADGRSVHAAASVAAGARLSVEFADGRVA
VTADGGSGSPVEAAKPTPAPAKPVKRPPSPAGQGSLF
>RPA0953 xseB, possible exodeoxyribonuclease small subunit
MAEAATTDVKKLSFERALEELETIVKRLEDGKVPLEESVTIYERGEALKR
RCEDLLRQAEARVDKITTDAQGAPTGTEPLDVQ
>RPA0281 xthA1, possible exodeoxyribonuclease III
MRLTLTTWNINSVRLRIDLVAKFLKAQRPDILCLQETKCPDDAFPLKRFK
RLGYEHIALNGQKGYHGVAVISKLPFVTTDIRTFCDIIDSRHISVSVKTD
ENAPPLVLHNFYVPAGGDIPDPAVNPKFKHKLSFLDEMKACEPLHPSGDQ
RHILVGDLNVAPHEHDVWSHKQLLKVVSHTPVECEKLLAVLRAGNWVDVA
RERIPLDQKVYTWWSYRAADWTVGDRGRRLDHIWVSEALKDRVVDFKVLR
DARSWERPSDHVPVTMTMEL
>RPA2861 xthA2, exodeoxyribonuclease III
MARRLTRLPRQICVRRGLLYHSAARHDLPRRKSSRATDGAMRIATWNVNS
VRQRLDHLVSWLQDCQPDVVCLQEIKCVDEAFPREPIEALGYNVVTHGQK
TFNGVALLSKYPLEEANPGLAGDESDVHARFLEGVVSLKHGVVRVACLYL
PNGNPVGSEKYPYKLSWMARLRDYAQQRLKTEEPLILAGDFNVIPQAEDV
HNPAAWTEDALFRPETRESFQTLLGLGLTDALRATTDAPGQYTFWDYQAG
AWQKNWGIRIDHLLLSPQAADRLRHVGIDSYVRNWEKPSDHVPVWADFDL
EAA
>RPA3307 xthA3, putative exonuclease III
MRGGVKIATFNVNNVNKRLPILLAWLKTARPDIVCLQELKAAEADFPEAA
LRKAGYAAAWVGQKSWNGVAVLARRREIVVTRRRLPGAPHDKQSRYIEAA
VAGIIVGCLYAPNGNPQPGPKFDDKLAWLKRLNRHAATLLKSGAPVVLAG
DFNVVPTPADIYPGKSWDKDALVQPAPRKLFAALLRQGWTDALRHCHPED
APYTFWSYWRNRFERDAGLRIDHLLLDPSLAARLKRAGVDRKVREAPEAS
DHAPAWIVIE