Gene list
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COG category: Replication, recombination and repair
Organism: Rhodopseudomonas palustris CGA009, CGA009
Number of genes found: 161
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| Rhodopseudomonas palustris CGA009, CGA009 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | RPA3811 | Excinuclease ABC, C subunit, N-terminal | SubName: Full=Excinuclease ABC, C subunit, N-terminal; | chromosome | CDS | 4308492 | 288 | - | 0.565972 |
| NA | RPA3670 | putative ATP-dependent RNA helicase | SubName: Full=Putative ATP-dependent RNA helicase; | chromosome | CDS | 4143976 | 1425 | + | 0.672281 |
| NA | RPA3189 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 3601644 | 792 | - | 0.67298 |
| NA | RPA4520 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 5101811 | 627 | - | 0.700159 |
| NA | RPA3853 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4355837 | 1116 | + | 0.637993 |
| NA | RPA1005 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 1107364 | 651 | + | 0.658986 |
| NA | RPA2981 | P2 ISBm2 | SubName: Full=P2 ISBm2; | chromosome | CDS | 3378321 | 327 | - | 0.636086 |
| NA | RPA0771 | possible protein commonly found in insertion elements | SubName: Full=Possible insertion element ISR1; SubName: Full=Possible insertion element ISR1 hypothetical 10 KD protein A3; SubName: Full=Possible protein commonly found in insertion elements; | chromosome | CDS | 854756 | 267 | - | 0.580524 |
| NA | RPA2220 | conserved unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2514284 | 2835 | + | 0.556261 |
| NA | RPA2156 | hypothetical protein | RecName: Full=N(2)-fixation sustaining protein CowN; AltName: Full=CO weal-nitrogenase; | chromosome | CDS | 2428576 | 279 | - | 0.620072 |
| NA | RPA4082 | possible phage-like integrase | SubName: Full=Possible phage-like integrase; | chromosome | CDS | 4619836 | 1227 | + | 0.597392 |
| NA | RPA3113 | conserved hypothetical protein | RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; | chromosome | CDS | 3517583 | 483 | + | 0.710145 |
| NA | RPA0032 | possible Staphylococcal nuclease homologues | SubName: Full=Possible Staphylococcal nuclease homologues; | chromosome | CDS | 37629 | 576 | + | 0.694444 |
| NA | RPA0894 | putative transposase | SubName: Full=Putative transposase; | chromosome | CDS | 995769 | 960 | - | 0.669792 |
| NA | RPA3837 | possible insertion element ISR1 | SubName: Full=Possible insertion element ISR1; SubName: Full=Possible insertion element ISR1 hypothetical 10 KD protein A3; SubName: Full=Possible protein commonly found in insertion elements; | chromosome | CDS | 4332529 | 267 | - | 0.580524 |
| NA | RPA3625 | Excinuclease ABC, C subunit, N-terminal | SubName: Full=Excinuclease ABC, C subunit, N-terminal; Flags: Precursor; | chromosome | CDS | 4087553 | 573 | + | 0.682373 |
| NA | RPA1841 | conserved unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2068059 | 408 | - | 0.607843 |
| NA | RPA2044 | conserved unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2300947 | 717 | + | 0.658298 |
| NA | RPA0613 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 680822 | 933 | - | 0.675241 |
| NA | RPA2260 | possible Viral (Superfamily 1) RNA helicase | SubName: Full=Possible Viral (Superfamily 1) RNA helicase; | chromosome | CDS | 2560618 | 3762 | + | 0.597555 |
| NA | RPA3200 | putative dual serine/threonine-protein kinase/phosphatase | SubName: Full=Putative dual serine/threonine-protein kinase/phosphatase; | chromosome | CDS | 3613758 | 1797 | - | 0.648303 |
| NA | RPA3518 | Excinuclease ABC, C subunit, N-terminal | SubName: Full=Excinuclease ABC, C subunit, N-terminal; | chromosome | CDS | 3976757 | 288 | + | 0.583333 |
| NA | RPA2738 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3109261 | 537 | + | 0.662942 |
| NA | RPA3136 | conserved unknown protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 3542561 | 867 | - | 0.61707 |
| NA | RPA0486 | Staphylococcus nuclease (SNase-like) | SubName: Full=Staphylococcus nuclease (SNase-like); | chromosome | CDS | 536979 | 726 | + | 0.669421 |
| NA | RPA3687 | putative MutT/ADP-ribose pyrophosphatase | SubName: Full=Putative MutT/ADP-ribose pyrophosphatase; | chromosome | CDS | 4160153 | 639 | - | 0.666667 |
| NA | RPA2215 | possible ATP-dependent exodeoxyribonuclease (subunit A) | SubName: Full=Possible ATP-dependent exodeoxyribonuclease (Subunit A); EC=3.1.11.5; | chromosome | CDS | 2499276 | 3402 | - | 0.650206 |
| NA | RPA0782 | conserved unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 866503 | 435 | - | 0.652874 |
| NA | RPA2216 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2502677 | 2664 | - | 0.659535 |
| NA | RPA3856 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4358739 | 360 | + | 0.613889 |
| NA | RPA3049 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3452843 | 690 | - | 0.67971 |
| NA | RPA1026 | possible adenine DNA methyltransferase | SubName: Full=Possible adenine DNA methyltransferase; | chromosome | CDS | 1127420 | 1131 | - | 0.623342 |
| NA | RPA1273 | possible deoxyribonuclease | SubName: Full=Possible deoxyribonuclease; | chromosome | CDS | 1392794 | 1110 | + | 0.648649 |
| NA | RPA0323 | Protein of unknown function UPF0102 | RecName: Full=UPF0102 protein RPA0323; | chromosome | CDS | 351332 | 393 | - | 0.681934 |
| NA | RPA4488 | Excinuclease ABC, C subunit, N-terminal | SubName: Full=Excinuclease ABC, C subunit, N-terminal; | chromosome | CDS | 5062553 | 288 | + | 0.5625 |
| NA | RPA0802 | possible DNA ligase | SubName: Full=Possible DNA ligase; | chromosome | CDS | 888628 | 1866 | - | 0.669346 |
| NA | RPA2477 | possible ATP-dependent RNA helicase | SubName: Full=Possible ATP-dependent RNA helicase; | chromosome | CDS | 2815836 | 1419 | - | 0.687104 |
| NA | RPA0289 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 318809 | 1032 | + | 0.664729 |
| NA | RPA4390 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 4943753 | 489 | - | 0.676892 |
| NA | RPA3059 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3461736 | 453 | - | 0.660044 |
| NA | RPA3819 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4315777 | 240 | - | 0.529167 |
| NA | RPA0075 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 83383 | 3150 | - | 0.686667 |
| NA | RPA2982 | possible insertion element ISR1 hypothetical 10 KD protein A3 | SubName: Full=Possible insertion element ISR1; SubName: Full=Possible insertion element ISR1 hypothetical 10 KD protein A3; SubName: Full=Possible protein commonly found in insertion elements; | chromosome | CDS | 3378641 | 267 | - | 0.580524 |
| NA | RPA4755 | possible DNA-3-methyladenine glycosidase II | SubName: Full=Possible DNA-3-methyladenine glycosidase II; | chromosome | CDS | 5366291 | 771 | + | 0.692607 |
| NA | RPA2776 | probable DNA polymerase III, delta prime subunit | SubName: Full=Probable DNA polymerase III, delta prime subunit; EC=2.7.7.7; | chromosome | CDS | 3147261 | 1056 | + | 0.690341 |
| NA | RPA3475 | putative transposase | SubName: Full=Possible transposase; SubName: Full=Putative transposase; | chromosome | CDS | 3921408 | 960 | - | 0.667708 |
| NA | RPA0506 | site-specific integrase/recombinase XerD | RecName: Full=Tyrosine recombinase XerD; | chromosome | CDS | 560033 | 1017 | + | 0.681416 |
| NA | RPA1671 | putative serine/threonine protein kinase | SubName: Full=Putative serine/threonine protein kinase; | chromosome | CDS | 1855925 | 1440 | + | 0.665972 |
| NA | RPA0033 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 38208 | 885 | - | 0.646328 |
| NA | RPA0770 | Integrase, catalytic domain | SubName: Full=Integrase, catalytic domain; | chromosome | CDS | 853839 | 924 | - | 0.637446 |
| NA | RPA2778 | possible deoxyribonuclease | SubName: Full=Possible deoxyribonuclease; | chromosome | CDS | 3149945 | 789 | + | 0.673004 |
| NA | RPA0491 | possible MgpS, ATP-dependent helicase | SubName: Full=Possible MgpS, ATP-dependent helicase; | chromosome | CDS | 541410 | 3282 | - | 0.676112 |
| NA | RPA4277 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4826624 | 630 | + | 0.661905 |
| NA | RPA3179 | Deoxyribodipyrimidine photolyase | SubName: Full=Deoxyribodipyrimidine photolyase; | chromosome | CDS | 3586798 | 1452 | + | 0.699724 |
| NA | RPA1033 | DUF85:Elongator protein 3/MiaB/NifB | SubName: Full=DUF85:Elongator protein 3/MiaB/NifB; | chromosome | CDS | 1134224 | 1161 | + | 0.660637 |
| NA | RPA1187 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 1298486 | 666 | + | 0.644144 |
| NA | RPA1292 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1410470 | 195 | - | 0.635897 |
| NA | RPA0768 | possible transposase | SubName: Full=Possible transposase; | chromosome | CDS | 851947 | 804 | + | 0.659204 |
| NA | RPA2204 | integrase | SubName: Full=Integrase; | chromosome | CDS | 2482087 | 1257 | + | 0.607796 |
| NA | RPA3580 | Integrase, catalytic domain | SubName: Full=Integrase, catalytic domain; | chromosome | CDS | 4046232 | 921 | + | 0.637351 |
| NA | RPA4136 | possible DNA topoisomerase | SubName: Full=Possible DNA topoisomerase; EC=5.99.1.2; | chromosome | CDS | 4676616 | 1911 | + | 0.640502 |
| NA | RPA2207 | putative recombinase | SubName: Full=Putative recombinase; | chromosome | CDS | 2484202 | 1569 | + | 0.613129 |
| NA | RPA3836 | Integrase, catalytic domain | SubName: Full=Integrase, catalytic domain; | chromosome | CDS | 4331612 | 921 | - | 0.637351 |
| NA | RPA2802 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; | chromosome | CDS | 3176999 | 2064 | + | 0.681686 |
| NA | RPA2534 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2872797 | 783 | + | 0.600255 |
| NA | RPA4001 | putative DEAD-box protein, ATP-independent RNA helicase | SubName: Full=Putative DEAD-box protein, ATP-independent RNA helicase; | chromosome | CDS | 4525204 | 2085 | + | 0.701199 |
| NA | RPA3830 | possible G/U mismatch-specific DNA glycosylase | SubName: Full=Possible G/U mismatch-specific DNA glycosylase; | chromosome | CDS | 4324251 | 495 | - | 0.614141 |
| NA | RPA0399 | possible transposase | SubName: Full=Possible transposase; | chromosome | CDS | 438123 | 1170 | - | 0.653846 |
| NA | RPA4335 | DnaB helicase | SubName: Full=DnaB helicase; | chromosome | CDS | 4886317 | 720 | - | 0.629167 |
| NA | RPA2214 | possible helicase | SubName: Full=Possible helicase; | chromosome | CDS | 2495915 | 3342 | - | 0.619988 |
| NA | RPA1937 | possible transposase | SubName: Full=Possible transposase; SubName: Full=Putative transposase; | chromosome | CDS | 2177757 | 960 | + | 0.667708 |
| NA | RPA1166 | N-6 Adenine-specific DNA methylase:Conserved hypothetical protein 95 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1275097 | 582 | + | 0.671821 |
| NA | RPA1293 | putative IS5 transposase | SubName: Full=Putative IS5 transposase; | chromosome | CDS | 1410628 | 804 | - | 0.644279 |
| NA | RPA4546 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 5124106 | 2313 | - | 0.655858 |
| NA | RPA2252 | putative ardC antirestriction protein | SubName: Full=Putative ardC antirestriction protein; | chromosome | CDS | 2553276 | 945 | - | 0.653968 |
| NA | RPA3650 | ATP-dependent DNA ligase | SubName: Full=ATP-dependent DNA ligase; EC=6.5.1.1; | chromosome | CDS | 4122046 | 2745 | - | 0.651366 |
| NA | RPA2332 | Rare lipoprotein A:Staphylococcus nuclease (SNase-like) | SubName: Full=Rare lipoprotein A:Staphylococcus nuclease (SNase-like); | chromosome | CDS | 2644354 | 1155 | + | 0.638095 |
| NA | RPA1332 | possible phage integrase/recombinase | SubName: Full=Possible phage integrase/recombinase; Flags: Precursor; | chromosome | CDS | 1456158 | 843 | + | 0.589561 |
| NA | RPA2218 | possible ATP-dependent RNA helicase | SubName: Full=Possible ATP-dependent RNA helicase; | chromosome | CDS | 2506544 | 3519 | + | 0.627451 |
| NA | RPA1802 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2022532 | 1437 | + | 0.704941 |
| NA | RPA3579 | possible insertion element ISR1 hypothetical 10 KD protein A3 | SubName: Full=Possible insertion element ISR1; SubName: Full=Possible insertion element ISR1 hypothetical 10 KD protein A3; SubName: Full=Possible protein commonly found in insertion elements; | chromosome | CDS | 4045969 | 267 | + | 0.580524 |
| NA | RPA1309 | possible transposase | SubName: Full=Possible transposase; | chromosome | CDS | 1429578 | 294 | + | 0.646259 |
| NA | RPA0074 | Possible exonuclease V and helicase activity based on COG assignment | SubName: Full=Possible exonuclease V and helicase activity based on COG assignment; | chromosome | CDS | 79901 | 3486 | - | 0.684739 |
| NA | RPA2980 | integrase | SubName: Full=Integrase; | chromosome | CDS | 3377728 | 597 | - | 0.634841 |
| NA | RPA2690 | possible uracil-DNA glycosylase | SubName: Full=Possible uracil-DNA glycosylase; | chromosome | CDS | 3061557 | 675 | - | 0.685926 |
| NA | RPA3704 | Excinuclease ABC, C subunit, N-terminal | SubName: Full=Excinuclease ABC, C subunit, N-terminal; | chromosome | CDS | 4182776 | 288 | + | 0.576389 |
| NA | RPA2279 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2580448 | 2607 | - | 0.677407 |
| NA | RPA4269 | ribonuclease H | RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; | chromosome | CDS | 4817500 | 468 | - | 0.630342 |
| NA | RPA3220 | AAA ATPase | SubName: Full=AAA ATPase; | chromosome | CDS | 3638930 | 1332 | - | 0.671171 |
| NA | RPA3127 | NUDIX hydrolase | SubName: Full=NUDIX hydrolase; | chromosome | CDS | 3535454 | 756 | + | 0.675926 |
| NA | RPA2700 | putative DNA repair protein RecO | RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; | chromosome | CDS | 3070697 | 753 | + | 0.689243 |
| NA | RPA2211 | DEAD/DEAH box helicase:Helicase, C-terminal | SubName: Full=DEAD/DEAH box helicase:Helicase, C-terminal; | chromosome | CDS | 2489714 | 3129 | - | 0.622563 |
| NA | RPA1327 | Ser/Thr protein kinase | SubName: Full=Ser/Thr protein kinase; EC=2.7.1.-; | chromosome | CDS | 1446214 | 957 | + | 0.652038 |
| NA | RPA2240 | possible replication protein A | SubName: Full=Possible replication protein A; | chromosome | CDS | 2538642 | 903 | - | 0.642303 |
| 3mg | RPA2586 | possible DNA-3-methyladenine glycosidase | RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; | chromosome | CDS | 2941820 | 678 | - | 0.690265 |
| DprA | RPA3120 | DNA processing chain A | SubName: Full=DNA processing chain A; | chromosome | CDS | 3525318 | 1143 | + | 0.706037 |
| Mfd | RPA2663 | transcription repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 3033100 | 3519 | + | 0.66212 |
| TopA | RPA3124 | DNA topoisomerase I | RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; | chromosome | CDS | 3529873 | 2736 | + | 0.663012 |
| alkB | RPA1722 | alkylated DNA repair protein | SubName: Full=Alkylated DNA repair protein; | chromosome | CDS | 1921936 | 651 | + | 0.675883 |
| dcm | RPA0349 | possible site-specific DNA-methyltransferase | SubName: Full=Possible site-specific DNA-methyltransferase; | chromosome | CDS | 378721 | 1173 | + | 0.614663 |
| dinP | RPA3135 | DNA damage inducible protein P | RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; | chromosome | CDS | 3541141 | 1296 | + | 0.682099 |
| dnaA | RPA0001 | chromosomal replication initiator protein DnaA | RecName: Full=Chromosomal replication initiator protein DnaA; | chromosome | CDS | 679 | 1419 | + | 0.656096 |
| dnaB | RPA3084 | replicative DNA helicase (dnaB) | SubName: Full=Replicative DNA helicase (DnaB); | chromosome | CDS | 3488450 | 1497 | + | 0.641951 |
| dnaE | RPA2924 | DNA polymerase III alpha subunit | SubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; | chromosome | CDS | 3306165 | 3456 | - | 0.66059 |
| dnaE2 | RPA1803 | putative DNA polymerase III alpha chain | RecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; | chromosome | CDS | 2024122 | 3588 | + | 0.658027 |
| dnaG | RPA1287 | putative DNA primase | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome | CDS | 1404459 | 2010 | + | 0.677114 |
| dnaN | RPA0002 | DNA polymerase III beta subunit | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome | CDS | 2332 | 1119 | + | 0.648794 |
| dnaQ, mutD | RPA0301 | putative DNA polymerase III epsilon chain | SubName: Full=Putative DNA polymerase III epsilon chain; | chromosome | CDS | 331177 | 699 | + | 0.653791 |
| dnaX | RPA0615 | possible DNA polymerase III tau subunit | SubName: Full=Possible DNA polymerase III tau subunit; | chromosome | CDS | 682649 | 1872 | + | 0.679487 |
| dnlJ | RPA3517 | DNA ligase | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome | CDS | 3974463 | 2079 | - | 0.660895 |
| exoI1 | RPA0791 | similar to Staphylococcus nuclease (SNase-like) | SubName: Full=Similar to Staphylococcus nuclease (SNase-like); | chromosome | CDS | 877812 | 822 | - | 0.653285 |
| exoI2 | RPA4563 | Staphylococcus nuclease (SNase-like) | SubName: Full=Staphylococcus nuclease (SNase-like); Flags: Precursor; | chromosome | CDS | 5142735 | 750 | - | 0.677333 |
| gyrA | RPA2599 | DNA gyrase subunit A | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome | CDS | 2956669 | 2664 | + | 0.648649 |
| gyrB | RPA0004 | DNA gyrase subunit B | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome | CDS | 5050 | 2442 | + | 0.64742 |
| himA | RPA2742 | integration host factor alpha subunit | RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; | chromosome | CDS | 3112791 | 357 | + | 0.630252 |
| hrpB | RPA0535 | putative ATP-dependent helicase | SubName: Full=Putative ATP-dependent helicase; | chromosome | CDS | 594594 | 2478 | - | 0.702179 |
| hupA | RPA2953 | possible DNA-binding protein hu-alpha (NS2) (HU-2) | SubName: Full=Possible DNA-binding protein hu-alpha (NS2) (HU-2); | chromosome | CDS | 3338656 | 312 | + | 0.641026 |
| ihfB | RPA0066 | integration host factor beta chain | RecName: Full=Integration host factor subunit beta; Short=IHF-beta; | chromosome | CDS | 73388 | 315 | + | 0.612698 |
| invA1 | RPA0171 | putative dinucleoside polyphosphate hydrolase (AP4A pyrophosphatase) (invasion protein A, NUDIX family, NUDH subfamily. | RecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; | chromosome | CDS | 190619 | 507 | + | 0.654832 |
| invA2 | RPA0174 | putative dinucleoside polyphosphate hydrolase (AP4A pyrophosphatase) (invasion protein A, NUDIX family hydrolase, NUDH subfamily. | RecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; | chromosome | CDS | 193548 | 522 | + | 0.681992 |
| mutL | RPA4371 | DNA mismatch repair protein MutL | RecName: Full=DNA mismatch repair protein MutL; | chromosome | CDS | 4920918 | 1788 | - | 0.686801 |
| mutM | RPA0084 | formamidopyrimidine-DNA glycosylase | RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; | chromosome | CDS | 96685 | 876 | + | 0.671233 |
| mutS | RPA0512 | DNA mismatch repair protein mutS | RecName: Full=DNA mismatch repair protein MutS; | chromosome | CDS | 569086 | 2724 | - | 0.697504 |
| mutT | RPA0594 | putative mutator protein mutT | SubName: Full=Putative mutator protein mutT; | chromosome | CDS | 663531 | 402 | + | 0.669154 |
| mutY | RPA4485 | adenine glycosylase mutY | SubName: Full=Adenine glycosylase mutY; | chromosome | CDS | 5059087 | 1050 | - | 0.712381 |
| nth | RPA0343 | endonuclease III DNA-(apurinic or apyrimidinic site) lyase | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome | CDS | 370525 | 786 | + | 0.656489 |
| ogt | RPA0341 | possible Ada polyprotein (O6-methylguanine-DNA methyltransferase) | SubName: Full=Possible Ada polyprotein (O6-methylguanine-DNA methyltransferase); | chromosome | CDS | 369039 | 933 | - | 0.6806 |
| ogt1 | RPA4427 | putative methylated-DNA-protein-cystein methyltransferase | SubName: Full=Putative methylated-DNA-protein-cystein methyltransferase; | chromosome | CDS | 4986620 | 549 | - | 0.672131 |
| ogt2 | RPA4762 | putative O-6-methylguanine-DNA methyltransferase | SubName: Full=Putative O-6-methylguanine-DNA methyltransferase; | chromosome | CDS | 5374977 | 594 | + | 0.703704 |
| parC | RPA2703 | DNA topoisomerase IV subunitA | RecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; | chromosome | CDS | 3072963 | 2262 | + | 0.653846 |
| parE | RPA2486 | DNA topoisomerase | RecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; | chromosome | CDS | 2826143 | 2052 | - | 0.655945 |
| polA | RPA4723 | DNA polymerase I | SubName: Full=DNA polymerase I; Flags: Precursor; | chromosome | CDS | 5330466 | 3078 | + | 0.671215 |
| polN | RPA1036 | possible phage DNA polymerases | SubName: Full=Possible phage DNA polymerases; | chromosome | CDS | 1138032 | 831 | - | 0.707581 |
| priA | RPA0181 | putative priA family helicase (primosomal protein N', replication factor Y) | SubName: Full=Putative priA family helicase (Primosomal protein N, replication factor Y); | chromosome | CDS | 200717 | 2211 | - | 0.673903 |
| radC | RPA0385 | possible DNA repair protein RadC | SubName: Full=Possible DNA repair protein RadC; | chromosome | CDS | 420890 | 726 | - | 0.640496 |
| recA | RPA3851 | recombination protein recA | RecName: Full=Protein RecA; AltName: Full=Recombinase A; | chromosome | CDS | 4353490 | 1092 | - | 0.641026 |
| recF | RPA0003 | putative RecF protein | RecName: Full=DNA replication and repair protein RecF; | chromosome | CDS | 3667 | 1167 | + | 0.689803 |
| recG | RPA2662 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; | chromosome | CDS | 3030557 | 2103 | - | 0.674275 |
| recJ | RPA2508 | putative single-strand DNA-specific exonuclease | SubName: Full=Putative single-strand DNA-specific exonuclease; Flags: Precursor; | chromosome | CDS | 2849930 | 1938 | + | 0.688339 |
| recN | RPA3519 | putative DNA repair protein RecN | RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; | chromosome | CDS | 3977199 | 1686 | - | 0.716489 |
| recQ | RPA4826 | DNA helicase | SubName: Full=DNA helicase; EC=3.6.1.-; | chromosome | CDS | 5449244 | 1851 | + | 0.668828 |
| recR | RPA0617 | putative recombination protein recR | RecName: Full=Recombination protein RecR; | chromosome | CDS | 684958 | 603 | + | 0.638474 |
| rlgA | RPA4541 | DNA invertase gene rlgA | SubName: Full=DNA invertase gene rlgA; | chromosome | CDS | 5121110 | 540 | - | 0.627778 |
| rnh2 | RPA1034 | possible ribonuclease HII | RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; | chromosome | CDS | 1135479 | 915 | + | 0.678689 |
| ruvA | RPA1100 | RuvA; Holliday branch migration protein | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; | chromosome | CDS | 1205358 | 618 | + | 0.660194 |
| ruvB | RPA1102 | RuvB; Holliday branch migration protein | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; | chromosome | CDS | 1206575 | 1050 | + | 0.675238 |
| ruvC | RPA1099 | RuvC; Holliday junction nuclease | RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; | chromosome | CDS | 1204649 | 525 | + | 0.693333 |
| ssb | RPA2814 | single-strand DNA-binding protein | RecName: Full=Single-stranded DNA-binding protein; | chromosome | CDS | 3188088 | 504 | - | 0.650794 |
| tag | RPA1067 | possible 3-methyladenine DNA glycosylase I | SubName: Full=Possible 3-methyladenine DNA glycosylase I; EC=3.2.2.20; | chromosome | CDS | 1177191 | 657 | - | 0.637747 |
| ung | RPA1799 | Uracil-DNA glycosylase:Phage SPO1 DNA polymerase-related protein | SubName: Full=Uracil-DNA glycosylase:Phage SPO1 DNA polymerase-related protein; | chromosome | CDS | 2018690 | 1488 | - | 0.671371 |
| uvrA | RPA2816 | excinuclease ABC subunit A | RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; | chromosome | CDS | 3190193 | 3018 | + | 0.649768 |
| uvrB | RPA4343 | possible excinuclease ABC subunit B | RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; | chromosome | CDS | 4895687 | 2589 | + | 0.655079 |
| uvrC | RPA1171 | putative excinuclease ABC subunit C | RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; | chromosome | CDS | 1278411 | 2115 | - | 0.679905 |
| uvrD | RPA3506 | DNA helicase II | SubName: Full=DNA helicase II; EC=3.6.1.-; | chromosome | CDS | 3958287 | 2547 | + | 0.669415 |
| vsr | RPA0350 | putative patch repair protein | SubName: Full=Putative patch repair protein; EC=3.1.-.-; | chromosome | CDS | 379890 | 417 | + | 0.585132 |
| xerC | RPA0182 | putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC) | RecName: Full=Tyrosine recombinase XerC; | chromosome | CDS | 202981 | 1116 | + | 0.672043 |
| xseA | RPA1161 | putative exonuclease VII, large subunit OB-fold nucleic acid binding domain | RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; | chromosome | CDS | 1267876 | 1614 | - | 0.703841 |
| xseB | RPA0953 | possible exodeoxyribonuclease small subunit | RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; | chromosome | CDS | 1054542 | 252 | - | 0.630952 |
| xthA1 | RPA0281 | possible exodeoxyribonuclease III | SubName: Full=Possible exodeoxyribonuclease III; | chromosome | CDS | 310015 | 813 | + | 0.621156 |
| xthA2 | RPA2861 | exodeoxyribonuclease III | SubName: Full=Exodeoxyribonuclease III; | chromosome | CDS | 3237166 | 912 | + | 0.654605 |
| xthA3 | RPA3307 | putative exonuclease III | SubName: Full=Putative exonuclease III; EC=3.1.11.2; | chromosome | CDS | 3728453 | 783 | - | 0.689655 |
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