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2024-05-07 05:50:54

Gene list

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COG category: Replication, recombination and repair
Organism: Rhodopseudomonas palustris CGA009, CGA009

Number of genes found: 161

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Rhodopseudomonas palustris CGA009, CGA009
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPA0486 Staphylococcus nuclease (SNase-like)chromosome CDS536979 726 + 0.669421
NA RPA2204 integrasechromosome CDS2482087 1257 + 0.607796
NA RPA2220 conserved unknown proteinchromosome CDS2514284 2835 + 0.556261
NA RPA2260 possible Viral (Superfamily 1) RNA helicasechromosome CDS2560618 3762 + 0.597555
NA RPA1273 possible deoxyribonucleasechromosome CDS1392794 1110 + 0.648649
NA RPA2980 integrasechromosome CDS3377728 597 - 0.634841
NA RPA1841 conserved unknown proteinchromosome CDS2068059 408 - 0.607843
NA RPA4488 Excinuclease ABC, C subunit, N-terminalchromosome CDS5062553 288 + 0.5625
NA RPA0613 NUDIX hydrolasechromosome CDS680822 933 - 0.675241
NA RPA2982 possible insertion element ISR1 hypothetical 10 KD protein A3chromosome CDS3378641 267 - 0.580524
NA RPA0771 possible protein commonly found in insertion elementschromosome CDS854756 267 - 0.580524
NA RPA3220 AAA ATPasechromosome CDS3638930 1332 - 0.671171
NA RPA0033 conserved hypothetical proteinchromosome CDS38208 885 - 0.646328
NA RPA0770 Integrase, catalytic domainchromosome CDS853839 924 - 0.637446
NA RPA2776 probable DNA polymerase III, delta prime subunitchromosome CDS3147261 1056 + 0.690341
NA RPA0768 possible transposasechromosome CDS851947 804 + 0.659204
NA RPA3200 putative dual serine/threonine-protein kinase/phosphatasechromosome CDS3613758 1797 - 0.648303
NA RPA2778 possible deoxyribonucleasechromosome CDS3149945 789 + 0.673004
NA RPA1292 hypothetical proteinchromosome CDS1410470 195 - 0.635897
NA RPA4546 conserved hypothetical proteinchromosome CDS5124106 2313 - 0.655858
NA RPA3179 Deoxyribodipyrimidine photolyasechromosome CDS3586798 1452 + 0.699724
NA RPA3580 Integrase, catalytic domainchromosome CDS4046232 921 + 0.637351
NA RPA3475 putative transposasechromosome CDS3921408 960 - 0.667708
NA RPA2215 possible ATP-dependent exodeoxyribonuclease (subunit A)chromosome CDS2499276 3402 - 0.650206
NA RPA0491 possible MgpS, ATP-dependent helicasechromosome CDS541410 3282 - 0.676112
NA RPA1309 possible transposasechromosome CDS1429578 294 + 0.646259
NA RPA0782 conserved unknown proteinchromosome CDS866503 435 - 0.652874
NA RPA3579 possible insertion element ISR1 hypothetical 10 KD protein A3chromosome CDS4045969 267 + 0.580524
NA RPA2802 ATP-dependent DNA helicasechromosome CDS3176999 2064 + 0.681686
NA RPA3189 NUDIX hydrolasechromosome CDS3601644 792 - 0.67298
NA RPA4001 putative DEAD-box protein, ATP-independent RNA helicasechromosome CDS4525204 2085 + 0.701199
NA RPA3059 hypothetical proteinchromosome CDS3461736 453 - 0.660044
NA RPA3687 putative MutT/ADP-ribose pyrophosphatasechromosome CDS4160153 639 - 0.666667
NA RPA1033 DUF85:Elongator protein 3/MiaB/NifBchromosome CDS1134224 1161 + 0.660637
NA RPA1187 NUDIX hydrolasechromosome CDS1298486 666 + 0.644144
NA RPA2477 possible ATP-dependent RNA helicasechromosome CDS2815836 1419 - 0.687104
NA RPA2534 hypothetical proteinchromosome CDS2872797 783 + 0.600255
NA RPA3811 Excinuclease ABC, C subunit, N-terminalchromosome CDS4308492 288 - 0.565972
NA RPA3113 conserved hypothetical proteinchromosome CDS3517583 483 + 0.710145
NA RPA3819 hypothetical proteinchromosome CDS4315777 240 - 0.529167
NA RPA0074 Possible exonuclease V and helicase activity based on COG assignmentchromosome CDS79901 3486 - 0.684739
NA RPA1937 possible transposasechromosome CDS2177757 960 + 0.667708
NA RPA2700 putative DNA repair protein RecOchromosome CDS3070697 753 + 0.689243
NA RPA0399 possible transposasechromosome CDS438123 1170 - 0.653846
NA RPA4390 NUDIX hydrolasechromosome CDS4943753 489 - 0.676892
NA RPA4136 possible DNA topoisomerasechromosome CDS4676616 1911 + 0.640502
NA RPA2211 DEAD/DEAH box helicase:Helicase, C-terminalchromosome CDS2489714 3129 - 0.622563
NA RPA0075 conserved hypothetical proteinchromosome CDS83383 3150 - 0.686667
NA RPA3127 NUDIX hydrolasechromosome CDS3535454 756 + 0.675926
NA RPA0032 possible Staphylococcal nuclease homologueschromosome CDS37629 576 + 0.694444
NA RPA3049 conserved hypothetical proteinchromosome CDS3452843 690 - 0.67971
NA RPA1026 possible adenine DNA methyltransferasechromosome CDS1127420 1131 - 0.623342
NA RPA1166 N-6 Adenine-specific DNA methylase:Conserved hypothetical protein 95chromosome CDS1275097 582 + 0.671821
NA RPA4755 possible DNA-3-methyladenine glycosidase IIchromosome CDS5366291 771 + 0.692607
NA RPA0289 conserved hypothetical proteinchromosome CDS318809 1032 + 0.664729
NA RPA0802 possible DNA ligasechromosome CDS888628 1866 - 0.669346
NA RPA3136 conserved unknown proteinchromosome CDS3542561 867 - 0.61707
NA RPA1327 Ser/Thr protein kinasechromosome CDS1446214 957 + 0.652038
NA RPA2738 conserved hypothetical proteinchromosome CDS3109261 537 + 0.662942
NA RPA4520 NUDIX hydrolasechromosome CDS5101811 627 - 0.700159
NA RPA1802 conserved hypothetical proteinchromosome CDS2022532 1437 + 0.704941
NA RPA1671 putative serine/threonine protein kinasechromosome CDS1855925 1440 + 0.665972
NA RPA2156 hypothetical proteinchromosome CDS2428576 279 - 0.620072
NA RPA3836 Integrase, catalytic domainchromosome CDS4331612 921 - 0.637351
NA RPA3518 Excinuclease ABC, C subunit, N-terminalchromosome CDS3976757 288 + 0.583333
NA RPA3670 putative ATP-dependent RNA helicasechromosome CDS4143976 1425 + 0.672281
NA RPA3650 ATP-dependent DNA ligasechromosome CDS4122046 2745 - 0.651366
NA RPA0323 Protein of unknown function UPF0102chromosome CDS351332 393 - 0.681934
NA RPA2214 possible helicasechromosome CDS2495915 3342 - 0.619988
NA RPA3853 hypothetical proteinchromosome CDS4355837 1116 + 0.637993
NA RPA1332 possible phage integrase/recombinasechromosome CDS1456158 843 + 0.589561
NA RPA3830 possible G/U mismatch-specific DNA glycosylasechromosome CDS4324251 495 - 0.614141
NA RPA2207 putative recombinasechromosome CDS2484202 1569 + 0.613129
NA RPA4082 possible phage-like integrasechromosome CDS4619836 1227 + 0.597392
NA RPA3856 hypothetical proteinchromosome CDS4358739 360 + 0.613889
NA RPA2981 P2 ISBm2chromosome CDS3378321 327 - 0.636086
NA RPA2240 possible replication protein Achromosome CDS2538642 903 - 0.642303
NA RPA2690 possible uracil-DNA glycosylasechromosome CDS3061557 675 - 0.685926
NA RPA3625 Excinuclease ABC, C subunit, N-terminalchromosome CDS4087553 573 + 0.682373
NA RPA0506 site-specific integrase/recombinase XerDchromosome CDS560033 1017 + 0.681416
NA RPA2218 possible ATP-dependent RNA helicasechromosome CDS2506544 3519 + 0.627451
NA RPA4277 conserved hypothetical proteinchromosome CDS4826624 630 + 0.661905
NA RPA3837 possible insertion element ISR1chromosome CDS4332529 267 - 0.580524
NA RPA2044 conserved unknown proteinchromosome CDS2300947 717 + 0.658298
NA RPA2252 putative ardC antirestriction proteinchromosome CDS2553276 945 - 0.653968
NA RPA2279 unknown proteinchromosome CDS2580448 2607 - 0.677407
NA RPA0894 putative transposasechromosome CDS995769 960 - 0.669792
NA RPA1293 putative IS5 transposasechromosome CDS1410628 804 - 0.644279
NA RPA2332 Rare lipoprotein A:Staphylococcus nuclease (SNase-like)chromosome CDS2644354 1155 + 0.638095
NA RPA4269 ribonuclease Hchromosome CDS4817500 468 - 0.630342
NA RPA1005 NUDIX hydrolasechromosome CDS1107364 651 + 0.658986
NA RPA2216 hypothetical proteinchromosome CDS2502677 2664 - 0.659535
NA RPA4335 DnaB helicasechromosome CDS4886317 720 - 0.629167
NA RPA3704 Excinuclease ABC, C subunit, N-terminalchromosome CDS4182776 288 + 0.576389
3mg RPA2586 possible DNA-3-methyladenine glycosidasechromosome CDS2941820 678 - 0.690265
DprA RPA3120 DNA processing chain Achromosome CDS3525318 1143 + 0.706037
Mfd RPA2663 transcription repair coupling factorchromosome CDS3033100 3519 + 0.66212
TopA RPA3124 DNA topoisomerase Ichromosome CDS3529873 2736 + 0.663012
alkB RPA1722 alkylated DNA repair proteinchromosome CDS1921936 651 + 0.675883
dcm RPA0349 possible site-specific DNA-methyltransferasechromosome CDS378721 1173 + 0.614663
dinP RPA3135 DNA damage inducible protein Pchromosome CDS3541141 1296 + 0.682099
dnaA RPA0001 chromosomal replication initiator protein DnaAchromosome CDS679 1419 + 0.656096
dnaB RPA3084 replicative DNA helicase (dnaB)chromosome CDS3488450 1497 + 0.641951
dnaE RPA2924 DNA polymerase III alpha subunitchromosome CDS3306165 3456 - 0.66059
dnaE2 RPA1803 putative DNA polymerase III alpha chainchromosome CDS2024122 3588 + 0.658027
dnaG RPA1287 putative DNA primasechromosome CDS1404459 2010 + 0.677114
dnaN RPA0002 DNA polymerase III beta subunitchromosome CDS2332 1119 + 0.648794
dnaQ, mutD RPA0301 putative DNA polymerase III epsilon chainchromosome CDS331177 699 + 0.653791
dnaX RPA0615 possible DNA polymerase III tau subunitchromosome CDS682649 1872 + 0.679487
dnlJ RPA3517 DNA ligasechromosome CDS3974463 2079 - 0.660895
exoI1 RPA0791 similar to Staphylococcus nuclease (SNase-like)chromosome CDS877812 822 - 0.653285
exoI2 RPA4563 Staphylococcus nuclease (SNase-like)chromosome CDS5142735 750 - 0.677333
gyrA RPA2599 DNA gyrase subunit Achromosome CDS2956669 2664 + 0.648649
gyrB RPA0004 DNA gyrase subunit Bchromosome CDS5050 2442 + 0.64742
himA RPA2742 integration host factor alpha subunitchromosome CDS3112791 357 + 0.630252
hrpB RPA0535 putative ATP-dependent helicasechromosome CDS594594 2478 - 0.702179
hupA RPA2953 possible DNA-binding protein hu-alpha (NS2) (HU-2)chromosome CDS3338656 312 + 0.641026
ihfB RPA0066 integration host factor beta chainchromosome CDS73388 315 + 0.612698
invA1 RPA0171 putative dinucleoside polyphosphate hydrolase (AP4A pyrophosphatase) (invasion protein A, NUDIX family, NUDH subfamily.chromosome CDS190619 507 + 0.654832
invA2 RPA0174 putative dinucleoside polyphosphate hydrolase (AP4A pyrophosphatase) (invasion protein A, NUDIX family hydrolase, NUDH subfamily.chromosome CDS193548 522 + 0.681992
mutL RPA4371 DNA mismatch repair protein MutLchromosome CDS4920918 1788 - 0.686801
mutM RPA0084 formamidopyrimidine-DNA glycosylasechromosome CDS96685 876 + 0.671233
mutS RPA0512 DNA mismatch repair protein mutSchromosome CDS569086 2724 - 0.697504
mutT RPA0594 putative mutator protein mutTchromosome CDS663531 402 + 0.669154
mutY RPA4485 adenine glycosylase mutYchromosome CDS5059087 1050 - 0.712381
nth RPA0343 endonuclease III DNA-(apurinic or apyrimidinic site) lyasechromosome CDS370525 786 + 0.656489
ogt RPA0341 possible Ada polyprotein (O6-methylguanine-DNA methyltransferase)chromosome CDS369039 933 - 0.6806
ogt1 RPA4427 putative methylated-DNA-protein-cystein methyltransferasechromosome CDS4986620 549 - 0.672131
ogt2 RPA4762 putative O-6-methylguanine-DNA methyltransferasechromosome CDS5374977 594 + 0.703704
parC RPA2703 DNA topoisomerase IV subunitAchromosome CDS3072963 2262 + 0.653846
parE RPA2486 DNA topoisomerasechromosome CDS2826143 2052 - 0.655945
polA RPA4723 DNA polymerase Ichromosome CDS5330466 3078 + 0.671215
polN RPA1036 possible phage DNA polymeraseschromosome CDS1138032 831 - 0.707581
priA RPA0181 putative priA family helicase (primosomal protein N', replication factor Y)chromosome CDS200717 2211 - 0.673903
radC RPA0385 possible DNA repair protein RadCchromosome CDS420890 726 - 0.640496
recA RPA3851 recombination protein recAchromosome CDS4353490 1092 - 0.641026
recF RPA0003 putative RecF proteinchromosome CDS3667 1167 + 0.689803
recG RPA2662 ATP-dependent DNA helicasechromosome CDS3030557 2103 - 0.674275
recJ RPA2508 putative single-strand DNA-specific exonucleasechromosome CDS2849930 1938 + 0.688339
recN RPA3519 putative DNA repair protein RecNchromosome CDS3977199 1686 - 0.716489
recQ RPA4826 DNA helicasechromosome CDS5449244 1851 + 0.668828
recR RPA0617 putative recombination protein recRchromosome CDS684958 603 + 0.638474
rlgA RPA4541 DNA invertase gene rlgAchromosome CDS5121110 540 - 0.627778
rnh2 RPA1034 possible ribonuclease HIIchromosome CDS1135479 915 + 0.678689
ruvA RPA1100 RuvA; Holliday branch migration proteinchromosome CDS1205358 618 + 0.660194
ruvB RPA1102 RuvB; Holliday branch migration proteinchromosome CDS1206575 1050 + 0.675238
ruvC RPA1099 RuvC; Holliday junction nucleasechromosome CDS1204649 525 + 0.693333
ssb RPA2814 single-strand DNA-binding proteinchromosome CDS3188088 504 - 0.650794
tag RPA1067 possible 3-methyladenine DNA glycosylase Ichromosome CDS1177191 657 - 0.637747
ung RPA1799 Uracil-DNA glycosylase:Phage SPO1 DNA polymerase-related proteinchromosome CDS2018690 1488 - 0.671371
uvrA RPA2816 excinuclease ABC subunit Achromosome CDS3190193 3018 + 0.649768
uvrB RPA4343 possible excinuclease ABC subunit Bchromosome CDS4895687 2589 + 0.655079
uvrC RPA1171 putative excinuclease ABC subunit Cchromosome CDS1278411 2115 - 0.679905
uvrD RPA3506 DNA helicase IIchromosome CDS3958287 2547 + 0.669415
vsr RPA0350 putative patch repair proteinchromosome CDS379890 417 + 0.585132
xerC RPA0182 putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC)chromosome CDS202981 1116 + 0.672043
xseA RPA1161 putative exonuclease VII, large subunit OB-fold nucleic acid binding domainchromosome CDS1267876 1614 - 0.703841
xseB RPA0953 possible exodeoxyribonuclease small subunitchromosome CDS1054542 252 - 0.630952
xthA1 RPA0281 possible exodeoxyribonuclease IIIchromosome CDS310015 813 + 0.621156
xthA2 RPA2861 exodeoxyribonuclease IIIchromosome CDS3237166 912 + 0.654605
xthA3 RPA3307 putative exonuclease IIIchromosome CDS3728453 783 - 0.689655