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2024-05-18 10:32:10

Gene list

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COG category: Replication, recombination and repair
Organism: Prochlorococcus marinus str. MIT 9313, MIT9313

Number of genes found: 99

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Prochlorococcus marinus str. MIT 9313, MIT9313
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PMT1699 Site-specific recombinaseSubName: Full=Site-specific recombinase; chromosome CDS1799354 333 + 0.459459
NA PMT1301 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1389921 525 - 0.533333
NA PMT0936 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1018997 309 + 0.524272
NA PMT1788 Ribonuclease HII and HIIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1886298 657 - 0.585997
NA PMT1107 conserved hypotheticalSubName: Full=Conserved hypothetical; EC=3.1.11.5; chromosome CDS1199183 1473 - 0.55465
NA PMT0074 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS77441 1011 - 0.568744
NA PMT1578 Putative RNA methylase family UPF0020SubName: Full=Putative RNA methylase family UPF0020; chromosome CDS1677975 1125 + 0.562667
NA PMT0865 RecF protein:ABC transporterSubName: Full=RecF protein:ABC transporter; chromosome CDS946491 2757 - 0.463547
NA PMT1083 putative ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; Flags: Precursor; chromosome CDS1169058 1908 - 0.533543
NA PMT0135 probable adenine glycosylaseSubName: Full=Probable adenine glycosylase; EC=3.2.2.-; chromosome CDS154524 1113 + 0.546271
NA PMT0162 possible Bacterial regulatory proteins, crp faSubName: Full=Possible Bacterial regulatory proteins, crp fa; chromosome CDS185029 618 - 0.444984
NA PMT0970 possible Herpesvirus VP23 like capsid proteinSubName: Full=Possible Herpesvirus VP23 like capsid protein; chromosome CDS1048734 291 - 0.460481
NA PMT0211 Recombination protein O (RecO)RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS242124 804 - 0.606965
NA PMT1639 DEAD/DEAH box helicase:Helicase C-terminal domainSubName: Full=DEAD/DEAH box helicase:Helicase C-terminal domain; chromosome CDS1740190 2496 + 0.561298
NA PMT0037 SWI/SNF family helicase_2SubName: Full=SWI/SNF family helicase_2; Flags: Precursor; chromosome CDS38153 1629 + 0.539595
NA PMT1808 possible Methylpurine-DNA glycosylase (MPG)RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS1908794 708 - 0.564972
NA PMT0839 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS914700 531 - 0.508475
NA PMT2184 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2309318 2091 + 0.548541
NA PMT0641 CHC2 zinc finger:Toprim domainRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS692462 2055 - 0.540633
NA PMT0778 Uracil-DNA glycosylaseSubName: Full=Uracil-DNA glycosylase; EC=2.7.7.7; chromosome CDS852991 624 - 0.532051
NA PMT2126 Phage integraseSubName: Full=Phage integrase; chromosome CDS2239027 1530 + 0.504575
NA PMT0833 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS909782 735 - 0.517007
NA PMT2129 hypotheticalSubName: Full=Uncharacterized protein; chromosome CDS2242503 291 - 0.477663
NA PMT1265 conserved hypothetical proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1354246 483 + 0.546584
NA PMT1725 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1827937 1446 + 0.561549
NA PMT0234 Phage integraseSubName: Full=Phage integrase; chromosome CDS268946 1152 + 0.457465
NA PMT0837 possible DNA-3-methyladenine glycosylaseSubName: Full=Possible DNA-3-methyladenine glycosylase; Flags: Precursor; chromosome CDS913690 444 - 0.513514
NA PMT0297 Staphylococcus nuclease (SNase) homologuesSubName: Full=Staphylococcus nuclease (SNase) homologues; Flags: Precursor; chromosome CDS339767 585 - 0.507692
NA PMT2127 possible Pancreatic hormone peptideSubName: Full=Possible Pancreatic hormone peptide; chromosome CDS2240593 1044 + 0.465517
NA PMT0624 Uncharacterised protein family UPF0102RecName: Full=UPF0102 protein PMT_0624; chromosome CDS678229 381 - 0.503937
NA PMT1168 Helicase C-terminal domainSubName: Full=Helicase C-terminal domain; chromosome CDS1260075 1317 + 0.566439
NA PMT0581 putative DNA helicaseSubName: Full=Putative DNA helicase; EC=3.6.1.-; chromosome CDS637572 2541 - 0.541913
NA PMT2071 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2179015 786 + 0.512723
NA PMT1609 possible DNA glycosylaseSubName: Full=Possible DNA glycosylase; Flags: Precursor; chromosome CDS1710489 315 - 0.552381
NA PMT0504 putative endonucleaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS556147 624 + 0.43109
NA PMT0775 Transcriptional-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS846450 3582 + 0.48297
NA PMT1241 phage integrase familySubName: Full=Phage integrase family; chromosome CDS1329296 1164 + 0.539519
NA PMT0960 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1040973 480 - 0.510417
NA PMT1661 SMF familySubName: Full=SMF family; chromosome CDS1766788 1059 - 0.583569
NA PMT0005 DNA gyrase/topoisomerase IV, subunit ASubName: Full=DNA gyrase/topoisomerase IV, subunit A; EC=5.99.1.3; chromosome CDS6115 2490 - 0.478313
NA PMT0302 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS345348 3993 - 0.440771
NA PMT0866 probable DNA repair exonucleaseSubName: Full=Probable DNA repair exonuclease; chromosome CDS949255 1215 - 0.504527
NA PMT1642 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1744383 333 + 0.45045
NA PMT1508 possible deoxyribonuclease, TatD familySubName: Full=Possible deoxyribonuclease, TatD family; EC=3.1.21.-; chromosome CDS1596835 834 - 0.543165
NA PMT1487 putative DNA helicaseSubName: Full=Putative DNA helicase; chromosome CDS1570495 2775 - 0.561081
NA PMT0269 Methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; chromosome CDS308441 402 + 0.542289
NA PMT1319 possible secreted protein MPB70 precursorSubName: Full=Possible secreted protein MPB70; Flags: Precursor; chromosome CDS1403994 1845 + 0.557724
NA PMT1129 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1222192 645 + 0.534884
NA PMT0878 possible alkylated DNA repair proteinSubName: Full=Possible alkylated DNA repair protein; chromosome CDS962849 606 + 0.521452
NA PMT0290 Phage integraseSubName: Full=Phage integrase; chromosome CDS329289 1269 + 0.469661
NA PMT2158 SNF2 related domain:DEAD/DEAH box helicaseSubName: Full=SNF2 related domain:DEAD/DEAH box helicase; chromosome CDS2279486 3300 + 0.57697
NA PMT1404 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1490705 327 - 0.48318
NA PMT0880 Staphylococcus nuclease (SNase) homologuesSubName: Full=Staphylococcus nuclease (SNase) homologues; Flags: Precursor; chromosome CDS964971 636 + 0.525157
NA PMT0526 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS575307 486 + 0.539095
NA PMT0294 Site-specific recombinaseSubName: Full=Site-specific recombinase; chromosome CDS333292 636 - 0.493711
NA PMT1885 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS1989891 576 - 0.548611
NA PMT0154 Eukaryotic protein kinase:Serine/Threonine protein kinaseSubName: Full=Eukaryotic protein kinase:Serine/Threonine protein kinase; chromosome CDS172364 1890 + 0.555556
NA PMT0830 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS906943 795 - 0.525786
NA PMT1395 Bacterial DNA-binding proteinSubName: Full=Bacterial DNA-binding protein; chromosome CDS1481263 276 - 0.532609
NA PMT1583 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1682823 357 + 0.563025
NA PMT0957 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1038579 480 - 0.510417
FPG PMT0186 Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase)RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS215736 876 - 0.52968
dnaA PMT1187 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1277265 1398 - 0.515021
dnaB PMT2176 DnaB helicase:RecA bacterial DNA recombination proteinSubName: Full=DnaB helicase:RecA bacterial DNA recombination protein; EC=3.6.1.-; chromosome CDS2302282 1419 + 0.562368
dnaE PMT0647 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS699452 3516 - 0.503697
dnaN PMT0001 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS174 1167 + 0.453299
dnaQ PMT0386 possible DNA polymerase III, epsilon subunitSubName: Full=Possible DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS434770 930 - 0.524731
dnaX PMT0059 DNA polymerase, gamma and tau subunitsSubName: Full=DNA polymerase, gamma and tau subunits; EC=2.7.7.7; chromosome CDS59078 1821 - 0.556837
gyrA PMT1124 DNA gyrase/topoisomerase IV, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1215746 2628 - 0.533866
gyrB PMT0121 DNA gyrase, subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS138528 1968 + 0.494411
holB PMT1989 DNA polymerase III, delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS2102319 981 - 0.556575
mutS PMT1546 putative DNA mismatch repair protein MutS familyRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS1636739 2487 - 0.581423
mutS,fdv PMT0079 putative DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS84051 2784 - 0.56717
mutT PMT1026 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS1101923 426 - 0.525822
polA PMT1157 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS1246207 2961 + 0.555556
priA PMT1271 primosomal protein N' (replication factor Y)SubName: Full=Primosomal protein N (Replication factor Y); chromosome CDS1357251 2307 - 0.570004
recA PMT1727 RecA bacterial DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1829777 1140 - 0.548246
recB PMT1086 similar to UvrD/REP helicaseSubName: Full=Similar to UvrD/REP helicase; chromosome CDS1173141 3825 - 0.520784
recC PMT1089 possible exodeoxyribonuclease V gamma chainSubName: Full=Possible exodeoxyribonuclease V gamma chain; EC=3.1.11.5; chromosome CDS1179591 3312 - 0.561594
recD PMT1085 similar to UvrD/REP helicaseSubName: Full=Similar to UvrD/REP helicase; chromosome CDS1171414 1731 - 0.533795
recF PMT1715 putative DNA repair and genetic recombination protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS1817124 1098 + 0.566485
recJ PMT0761 Single-stranded DNA-specific exonucleaseSubName: Full=Single-stranded DNA-specific exonuclease; EC=3.1.-.-; chromosome CDS830386 1899 + 0.508689
recN PMT2271 ABC transporter:DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2405246 1683 - 0.607249
recQ PMT0189 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS218066 1485 + 0.598653
recR PMT1077 RecR proteinRecName: Full=Recombination protein RecR; chromosome CDS1163056 570 - 0.529825
rnhA PMT2093 possible ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS2205905 774 + 0.560724
ruvA PMT0644 putative holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS697936 678 + 0.551622
ruvB PMT0156 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS174946 1059 + 0.576959
ruvC PMT1136 Crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1227761 465 + 0.582796
ssb PMT0141 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS160956 387 - 0.552972
topA PMT1353 Prokaryotic DNA topoisomeraseRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1436859 2751 - 0.554344
umuC PMT0638 putative UmuC proteinSubName: Full=Putative UmuC protein; chromosome CDS689823 1275 + 0.557647
uvrA PMT2270 Excinuclease ABC, A subunit, ATP/GTP-binding site motif A (P-loop):ABC transporterRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS2402240 2961 - 0.54002
uvrB PMT0071 excinuclease ABC, subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS72948 2040 + 0.468137
uvrC PMT0724 Excinuclease ABC subunit C (UvrC)RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS782299 2004 + 0.455589
uvrD PMT1917 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; EC=3.6.1.-; chromosome CDS2022796 2409 - 0.534662
xseA PMT1641 Exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; chromosome CDS1743229 1158 + 0.518135
xthA PMT1294 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS1380858 840 + 0.528571
yrvN PMT1618 putative ATPase, AAA familySubName: Full=Putative ATPase, AAA family; chromosome CDS1719617 2208 + 0.564764