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2024-05-18 06:30:56

Gene list

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COG category: Replication, recombination and repair
Organism: Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4

Number of genes found: 71

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Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PMM1321 Bacterial histone-like DNA-binding proteinSubName: Full=Bacterial histone-like DNA-binding protein; chromosome CDS1271727 276 - 0.387681
NA PMM0005 DNA gyrase/topoisomerase IV, subunit ASubName: Full=DNA gyrase/topoisomerase IV, subunit A; EC=5.99.1.3; chromosome CDS5887 2442 - 0.282146
NA PMM0524 Phage integrase familySubName: Full=Phage integrase family; chromosome CDS495020 1170 - 0.311966
NA PMM0254 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS242645 2037 + 0.278351
NA PMM0659 NAD-dependent DNA ligase N-terminusSubName: Full=NAD-dependent DNA ligase N-terminus; EC=6.5.1.2; chromosome CDS626013 750 + 0.332
NA PMM1515 Site-specific recombinaseSubName: Full=Site-specific recombinase; chromosome CDS1456993 687 + 0.276565
NA PMM0802 putative endonucleaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS760952 654 - 0.324159
NA PMM1059 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS999094 588 - 0.270408
NA PMM0480 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS454404 513 + 0.364522
NA PMM1517 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1457896 900 - 0.311111
NA PMM1101 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS1045073 1779 - 0.293423
NA PMM1486 possible deoxyribonuclease, TatD familySubName: Full=Possible deoxyribonuclease, TatD family; EC=3.1.21.-; chromosome CDS1423552 795 - 0.333333
NA PMM1564 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1491846 1449 - 0.266391
NA PMM1417 Staphylococcus nuclease (SNase) homologuesSubName: Full=Staphylococcus nuclease (SNase) homologues; Flags: Precursor; chromosome CDS1360407 408 + 0.318627
NA PMM1502 Ribonuclease HII and HIIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1442320 630 + 0.306349
NA PMM0386 possible uncharacterized DNA methylaseSubName: Full=Possible uncharacterized DNA methylase; chromosome CDS366972 645 - 0.266667
NA PMM0939 CHC2 zinc finger:Toprim domainRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS896953 2037 - 0.290133
NA PMM0053 Putative RNA methylase family UPF0020SubName: Full=Putative RNA methylase family UPF0020; chromosome CDS56663 1125 + 0.296
NA PMM0675 Uracil-DNA glycosylaseSubName: Full=Uracil-DNA glycosylase; EC=2.7.7.7; chromosome CDS643157 504 + 0.299603
NA PMM1467 putative DNA helicaseSubName: Full=Putative DNA helicase; chromosome CDS1400415 2727 - 0.316098
NA PMM0839 Transcriptional-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS795015 3516 - 0.281854
NA PMM0502 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS475580 450 - 0.355556
NA PMM0348 possible Spectrin repeatSubName: Full=Possible Spectrin repeat; chromosome CDS333688 240 - 0.3125
NA PMM1360 similar to DNA photolyaseSubName: Full=Similar to DNA photolyase; chromosome CDS1308515 1140 - 0.285088
NA PMM0805 hypotheticalSubName: Full=Uncharacterized protein; chromosome CDS763548 291 - 0.230241
NA PMM0451 possible Arenavirus glycoproteinSubName: Full=Possible Arenavirus glycoprotein; chromosome CDS430039 513 + 0.259259
NA PMM0247 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS239494 972 + 0.269547
NA PMM0234 possible Methylpurine-DNA glycosylase (MPG)SubName: Full=Possible Methylpurine-DNA glycosylase (MPG); EC=3.2.2.21; chromosome CDS227169 498 - 0.289157
NA PMM0775 conserved hypotheticalSubName: Full=Conserved hypothetical; chromosome CDS739106 291 - 0.343643
NA PMM0398 possible Recombination protein O (RecO)RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS377005 780 - 0.339744
NA PMM0791 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS752038 456 - 0.311404
NA PMM0729 possible ATP-dependent DNA ligaseSubName: Full=Possible ATP-dependent DNA ligase; EC=6.5.1.1; chromosome CDS692919 1638 - 0.28022
NA PMM0286 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS275944 564 - 0.322695
NA PMM1647 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1575216 1002 + 0.266467
FPG PMM0328 Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase)RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS318175 879 - 0.312856
dnaA PMM0565 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS531716 1392 + 0.336925
dnaB PMM1674 DnaB replicative helicaseSubName: Full=DnaB replicative helicase; EC=3.6.1.-; chromosome CDS1606266 1383 + 0.348518
dnaE PMM0945 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS901788 3498 - 0.318182
dnaN PMM0001 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS174 1158 + 0.292746
dnaQ PMM0621 possible DNA polymerase III, epsilon subunitSubName: Full=Possible DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS592537 813 + 0.302583
dnaX PMM1658 DNA polymerase, gamma and tau subunitsSubName: Full=DNA polymerase, gamma and tau subunits; EC=2.7.7.7; chromosome CDS1589771 1740 + 0.287356
gyrA PMM1063 DNA gyrase/topoisomerase IV, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1002199 2604 + 0.353303
gyrB PMM1634 DNA gyrase, subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; Flags: Precursor; chromosome CDS1560853 1968 - 0.339939
holB PMM0129 DNA polymerase III, delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS126143 960 - 0.259375
lig PMM1679 ATP-dependent DNA ligaseSubName: Full=ATP-dependent DNA ligase; EC=6.5.1.1; chromosome CDS1611933 1332 + 0.337087
mutS PMM0217 putative DNA mismatch repair protein MutS familyRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS210607 2412 + 0.297678
mutS,fdv PMM1645 putative DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1571753 2748 + 0.300946
pebA PMM1593 phycoerythrobilin:ferredoxin oxidoreductaseRecName: Full=15,16-dihydrobiliverdin:ferredoxin oxidoreductase; EC=1.3.7.2; chromosome CDS1522121 711 - 0.236287
phr PMM0285 putative DNA photolyaseSubName: Full=Putative DNA photolyase; EC=4.1.99.3; chromosome CDS274511 1437 - 0.304106
polA PMM1140 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS1090252 2931 + 0.308768
priA PMM0497 primosomal protein N' (replication factor Y)SubName: Full=Primosomal protein N (Replication factor Y); chromosome CDS470582 2277 + 0.325428
recA PMM1562 RecA bacterial DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1490458 1113 + 0.359389
recB PMM1103 possible UvrD/REP helicase subunit BSubName: Full=Possible UvrD/REP helicase subunit B; EC=3.1.11.5; chromosome CDS1048679 3630 - 0.238567
recD PMM1102 possible exodeoxyribonuclease V 67 kD polypeptideSubName: Full=Possible exodeoxyribonuclease V 67 kD polypeptide; EC=3.1.11.5; chromosome CDS1046989 1689 - 0.250444
recF PMM1573 putative DNA repair and genetic recombination protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS1501038 972 - 0.298354
recG PMM0756 ATP-dependent DNA helicase recGSubName: Full=ATP-dependent DNA helicase recG; EC=3.6.1.-; chromosome CDS715992 2457 + 0.266585
recN PMM1713 DNA REPAIR PROTEIN RECN, ABC transporterRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1652530 1680 - 0.264881
recR PMM1097 RecR proteinRecName: Full=Recombination protein RecR; chromosome CDS1041721 600 - 0.318333
rnhA PMM0200 possible ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS194249 723 - 0.297372
ruvA PMM0942 putative holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS900350 660 + 0.24697
ruvB PMM1615 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1545495 1059 - 0.309726
ruvC PMM1054 Crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS995971 474 - 0.364979
ssb PMM1623 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1552392 372 + 0.325269
topA PMM0436 Prokaryotic DNA topoisomeraseRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS414484 2613 + 0.34558
umuC PMM0937 putative UmuC proteinSubName: Full=Putative UmuC protein; chromosome CDS895182 1293 + 0.290023
uvrA PMM1712 Excinuclease ABC, A subunit, ATP/GTP-binding site motif A (P-loop):ABC transporterRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1649575 2901 - 0.348501
uvrB PMM1649 Excinuclease ABC subunit B (UvrB)RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1578026 2040 - 0.340196
uvrC PMM0882 Excinuclease ABC subunit C (UvrC)RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS842214 1971 - 0.270928
uvrD PMM0304 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; EC=3.6.1.-; chromosome CDS290882 2409 - 0.338315
xthA PMM0484 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS458167 846 - 0.308511
yrvN PMM0077 putative ATPase, AAA familySubName: Full=Putative ATPase, AAA family; chromosome CDS82844 1290 + 0.318605