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2024-05-04 10:33:59

Gene list

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COG category: Replication, recombination and repair
Organism: Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4

Number of genes found: 71

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Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PMM0451 possible Arenavirus glycoproteinchromosome CDS430039 513 + 0.259259
NA PMM0502 conserved hypothetical proteinchromosome CDS475580 450 - 0.355556
NA PMM0254 conserved hypothetical proteinchromosome CDS242645 2037 + 0.278351
NA PMM1502 Ribonuclease HII and HIIIchromosome CDS1442320 630 + 0.306349
NA PMM0675 Uracil-DNA glycosylasechromosome CDS643157 504 + 0.299603
NA PMM0398 possible Recombination protein O (RecO)chromosome CDS377005 780 - 0.339744
NA PMM1564 conserved hypothetical proteinchromosome CDS1491846 1449 - 0.266391
NA PMM1647 conserved hypothetical proteinchromosome CDS1575216 1002 + 0.266467
NA PMM0348 possible Spectrin repeatchromosome CDS333688 240 - 0.3125
NA PMM0386 possible uncharacterized DNA methylasechromosome CDS366972 645 - 0.266667
NA PMM1517 conserved hypothetical proteinchromosome CDS1457896 900 - 0.311111
NA PMM1321 Bacterial histone-like DNA-binding proteinchromosome CDS1271727 276 - 0.387681
NA PMM1467 putative DNA helicasechromosome CDS1400415 2727 - 0.316098
NA PMM0659 NAD-dependent DNA ligase N-terminuschromosome CDS626013 750 + 0.332
NA PMM1515 Site-specific recombinasechromosome CDS1456993 687 + 0.276565
NA PMM1059 conserved hypothetical proteinchromosome CDS999094 588 - 0.270408
NA PMM0802 putative endonucleasechromosome CDS760952 654 - 0.324159
NA PMM0775 conserved hypotheticalchromosome CDS739106 291 - 0.343643
NA PMM0839 Transcriptional-repair coupling factorchromosome CDS795015 3516 - 0.281854
NA PMM0524 Phage integrase familychromosome CDS495020 1170 - 0.311966
NA PMM0939 CHC2 zinc finger:Toprim domainchromosome CDS896953 2037 - 0.290133
NA PMM1486 possible deoxyribonuclease, TatD familychromosome CDS1423552 795 - 0.333333
NA PMM0791 conserved hypothetical proteinchromosome CDS752038 456 - 0.311404
NA PMM0234 possible Methylpurine-DNA glycosylase (MPG)chromosome CDS227169 498 - 0.289157
NA PMM0247 conserved hypothetical proteinchromosome CDS239494 972 + 0.269547
NA PMM0480 conserved hypothetical proteinchromosome CDS454404 513 + 0.364522
NA PMM1417 Staphylococcus nuclease (SNase) homologueschromosome CDS1360407 408 + 0.318627
NA PMM0286 NUDIX hydrolasechromosome CDS275944 564 - 0.322695
NA PMM1101 putative ATP-dependent RNA helicasechromosome CDS1045073 1779 - 0.293423
NA PMM0053 Putative RNA methylase family UPF0020chromosome CDS56663 1125 + 0.296
NA PMM1360 similar to DNA photolyasechromosome CDS1308515 1140 - 0.285088
NA PMM0729 possible ATP-dependent DNA ligasechromosome CDS692919 1638 - 0.28022
NA PMM0805 hypotheticalchromosome CDS763548 291 - 0.230241
NA PMM0005 DNA gyrase/topoisomerase IV, subunit Achromosome CDS5887 2442 - 0.282146
FPG PMM0328 Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase)chromosome CDS318175 879 - 0.312856
dnaA PMM0565 chromosomal replication initiator protein DnaAchromosome CDS531716 1392 + 0.336925
dnaB PMM1674 DnaB replicative helicasechromosome CDS1606266 1383 + 0.348518
dnaE PMM0945 DNA polymerase III, alpha subunitchromosome CDS901788 3498 - 0.318182
dnaN PMM0001 DNA polymerase III, beta chainchromosome CDS174 1158 + 0.292746
dnaQ PMM0621 possible DNA polymerase III, epsilon subunitchromosome CDS592537 813 + 0.302583
dnaX PMM1658 DNA polymerase, gamma and tau subunitschromosome CDS1589771 1740 + 0.287356
gyrA PMM1063 DNA gyrase/topoisomerase IV, subunit Achromosome CDS1002199 2604 + 0.353303
gyrB PMM1634 DNA gyrase, subunit Bchromosome CDS1560853 1968 - 0.339939
holB PMM0129 DNA polymerase III, delta prime subunitchromosome CDS126143 960 - 0.259375
lig PMM1679 ATP-dependent DNA ligasechromosome CDS1611933 1332 + 0.337087
mutS PMM0217 putative DNA mismatch repair protein MutS familychromosome CDS210607 2412 + 0.297678
mutS,fdv PMM1645 putative DNA mismatch repair proteinchromosome CDS1571753 2748 + 0.300946
pebA PMM1593 phycoerythrobilin:ferredoxin oxidoreductasechromosome CDS1522121 711 - 0.236287
phr PMM0285 putative DNA photolyasechromosome CDS274511 1437 - 0.304106
polA PMM1140 DNA polymerase Ichromosome CDS1090252 2931 + 0.308768
priA PMM0497 primosomal protein N' (replication factor Y)chromosome CDS470582 2277 + 0.325428
recA PMM1562 RecA bacterial DNA recombination proteinchromosome CDS1490458 1113 + 0.359389
recB PMM1103 possible UvrD/REP helicase subunit Bchromosome CDS1048679 3630 - 0.238567
recD PMM1102 possible exodeoxyribonuclease V 67 kD polypeptidechromosome CDS1046989 1689 - 0.250444
recF PMM1573 putative DNA repair and genetic recombination protein RecFchromosome CDS1501038 972 - 0.298354
recG PMM0756 ATP-dependent DNA helicase recGchromosome CDS715992 2457 + 0.266585
recN PMM1713 DNA REPAIR PROTEIN RECN, ABC transporterchromosome CDS1652530 1680 - 0.264881
recR PMM1097 RecR proteinchromosome CDS1041721 600 - 0.318333
rnhA PMM0200 possible ribonuclease HIchromosome CDS194249 723 - 0.297372
ruvA PMM0942 putative holliday junction DNA helicase RuvAchromosome CDS900350 660 + 0.24697
ruvB PMM1615 Holliday junction DNA helicase RuvBchromosome CDS1545495 1059 - 0.309726
ruvC PMM1054 Crossover junction endodeoxyribonuclease RuvCchromosome CDS995971 474 - 0.364979
ssb PMM1623 single-stranded DNA-binding proteinchromosome CDS1552392 372 + 0.325269
topA PMM0436 Prokaryotic DNA topoisomerasechromosome CDS414484 2613 + 0.34558
umuC PMM0937 putative UmuC proteinchromosome CDS895182 1293 + 0.290023
uvrA PMM1712 Excinuclease ABC, A subunit, ATP/GTP-binding site motif A (P-loop):ABC transporterchromosome CDS1649575 2901 - 0.348501
uvrB PMM1649 Excinuclease ABC subunit B (UvrB)chromosome CDS1578026 2040 - 0.340196
uvrC PMM0882 Excinuclease ABC subunit C (UvrC)chromosome CDS842214 1971 - 0.270928
uvrD PMM0304 UvrD/REP helicasechromosome CDS290882 2409 - 0.338315
xthA PMM0484 exodeoxyribonuclease IIIchromosome CDS458167 846 - 0.308511
yrvN PMM0077 putative ATPase, AAA familychromosome CDS82844 1290 + 0.318605