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# Synechococcus sp. WH 8102, WH8102

>SYNW0952 conserved hypothetical protein
MAPARAGSFNANFSPETLESFKSLCRDQSRQYTKVLERLAELYLGSQGSI
LDTPEENLIGTQTSSPEVDNLAKSVEQLETATAIYREDFEEIVSQLKSIE
ARIKKLEGNIVK
>SYNW0073 conserved hypothetical protein
MPIHLIWGDDAAARDRAINGLIEKVVDPSWASLNLSRLDGAEAGQAAQAL
DEARTPPFASGERLVLLQRSPFCNGCPTELADRFEAALTLIPDSSHLVLV
NPSKPDGRLRTTKALQKRIKAGLDQEQSFPLPAVWDGAGQRQLVQRTAEA
LGLRLEPDAIDALVDAIGTDSARLESELRKLSLRSITISADLVAELVGGL
ATNALQVGDALLEGNPGDAIARWDALIEAGEPALRIVATLSGQIRGWLWV
SLMEQQGERDVAVIAKAAGIGNPKRIYVMRKQLQGRPPQRFLSLLGRLLE
VEARLKRGSQPGDAFRDGLLG
>SYNW0587 DNA binding protein HU
MNKADLVNLVAARTELTKTDVSMVVDAAIETIIDSVVEGKKVSILGFGSF
EPRERSARQGLNPKTGEKIAIPAKRVPAFTAGKMFKDRVQG
>SYNW1351 partial homology to phage recombinase
MVAQKSKTKASTKADVAGHKVAISYSRVSTGKQSGEDRSGEERQQRAIES
WLSEHPDYSLDREIRVTVSGAKAGRFEWFISELEKGVLPRGTCLVVEKVS
RFSREPIEAVLKTLLRLWDAGGAIAFCELGGKVLSCFEQDSGDAYVVLGA
IQRARGEWLERQDRSLAARRKERDLHKQGTHKPKARTKRGRADYPFWLDV
KDGEYVLNDWATHVKTIFSLAPKLGITRIANHLDSQGIKAVSDGRRRWTP
NSVSGVLRNEAALGYKVFWKDNKPSDEKVVCYPPVVTQEEWDAAQMGLSS
RSQSRPSNNSPTQQNLFAGSIYCRHCGSPMVVKNAGNGQKFLRCRNDFSI
CTQRGHKYLEAFLLNHLAQYRWEEFFNAGVQEAALTSARSSLLEAEKTLR
SIQEDVAKVNSNITKLTTSDSPELLRVLPQFSRQLDKLLADQNVAQAAVD
DVRAEVNKLTHQQTGREAERALKRQIDGFISGEDNSLEQRVSFNTWLREQ
KLVLCLEDGHAIAELDDEVFPADEMKAFVNIGEPVFDQGRLVMVNCLLET
MKNHSSFDKMSDALKAKVHSIYQFQDNTIDPERLQKGWEEKIDKGWPIVD
LIGIRTPEEHDYWQKVVAAGGDDPSSTFEGHIGLLNQPETYGTDLVGPWT
SREQRKRGRPARRRRMN
>SYNW0977 conserved hypothetical protein
MGLIQTLQSRLLRYESTALRYRQAYFSAARNLARAQFLLGDAELSQRLWQ
DVADRGLDVERIEQLMYGCWFQDDPDAMAEADAAYLSRTAPHESPGIFEH
C
>SYNW2179 putative HrpA-like helicase
MTLKPRQDAYPIDALLPELCARFQPGRTLLLQAPPGAGKTTRVPLALIGA
LGDQVRRDGRIWMIEPRRLAARAAADRLASSLEEPVGQRIGFAVRGEQRR
SARTQVEVITDGLFLRRLQADPSLDGVSCVLFDEFHERRRDADLAFALLR
EAAALLRPDLSLMLMSATLDIADLRSRLPEATLLTSQGRAHPVDTLHQPP
RADEPLPQQVLRAVETHGLDLPTGSGVLVFLPGLAEIERCRERLEHADAL
RHWQICPLHGQLPLERQSDALKRCPANRDGKLVLASGIAESSVTIDGVRL
VIDSGLSRQLRFDPNTGMEGLETVPASLASADQRRGRAGRQGPGCCVRLW
SPAEQQRRPSFSPPELLLADPQPVVMELAGWGAGLGDALPWLDPPPQAAL
REGQGELKSLGILDRDGRLTAIGLQLTQLGVHPRLGLLMVEAQRHGRSRL
GCDLAALLSDRDPLSAAEVGCDLEARLEAMGEQKRCKPLRELSRQLERQL
ERLGIDPDAEGTGIDSAQLILTAFPKWLALQRPGQTGRYRLRQGRGAILR
PTDPLAGSEALAVARLDMGQRDTRIQLAVPLSRQRVEQLALQQGEWLDQV
SWDDKSERIRAERQLKLGALVLRQEAQPAPPAEQCRDLLLGRFRESGRLE
LLPWSDSCEQLRRRLALAHRHRGSPWPNRDRIPLIEHPEQWLGPCLEGCL
SWRDLDELSLQEALWGELSWEHRQQLNRLLPLRLSIPSGREATLRYEDEE
VVLAVKLQEMFGCQEGPTVLDNRLAVTVELLSPAGRPLQRTRDLRGFWQG
SYNDVRREMRGRYPKHPWPDNPLEAIATAFTKRRSDTRE
>SYNW0642 hypothetical
MSFESFLHYRLRVRIRNQMQYWYSTTNILSSLRDKLAKAGLKPLTSINSD
NEPQNVLLIYSAPNQVLEQKRLEESTATTCNEIRAYYEELSLLSAKYKNI
SSSWRLNSLDSTSIIRLCNGENPLLDKSINFPSPKSLSSLLSLEIARKEP
RIIDIYLDLELKSHLFGLEADSNYLQRLSQGSLIDLALMDWWEVNLDREA
SFEEVENSLNQLTQMQSNYDCLVRENERLQKSLRKQRAKYALLVEENKEL
KESLSDQPISNKPEIEDHNLRGDHDEVVSQESGTNMSETERQLEVITSDK
GGLFPALVRQLLKLASKNNQ
>SYNW0219 probable deoxyribodipyrimidine photolyase
MTTPRVLFWHRRDLRLTDNLGLAAAAAISPAVTGVYVLDPQVISPSEHLL
PMAPARLWFLIESLIELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEA
VVWNRDVEPYARERDRQVAQRLQADGRKVVVDWDQLLIAPELLKTGGGDP
YRVYGPFLRNWRGQVQAKQPVTVPAPAGLVDLDPAAVPSGEPLMARRDSH
GFKGTELCPCRPGEAAAMQQLTSFCDGALFGYEPDRNFPGVVGTSYLSAA
LSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWREFYQQALFH
FPELSDGPYREQWRRFPWENNEDWFDFWREGQTGMPIIDAAMRQLNQTGW
MHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS
GMDPKPLRIFNPATQASKFDAAGDYIRQWVPELRHVNTKDLLSGEIGALE
RRDYPEPLVNHKTQQAKFKALYATIRS
>SYNW0612 possible deoxyribonuclease similar to TatD
MSSIPTLIDSHCHIVFRNFDDDLDEVASRWREAGVKALLHACVEPSEIPA
IRALADRFPEMRYSVGVHPLDTEHWRDDTIAVLRRAALADKRVVAIGELG
LDLFRDKNLEEQLQVLRPQLDLAVELDLPVIIHCRDAAEPMLNELRARVP
EGLCPRGVMHCWGGTPDEMDGFLELGLYISFSGTVTFPKAVPTHDCARQV
PEDRFLVETDCPFLAPVPRRGKRNEPAFVASVANRVAELRGVDLDTVAAS
STSNARRLFGLP
>SYNW1666 phage integrase family
MGLAVREYLATSRHRESTRKDYANCLNNQVLPVLGAETPLSCFAFSDVQR
DGRTGRRIVLDMKKDLEKRAPVQADKALMVLRQVFGYAIDQGWMSEPNPA
QGSRHARSSHVVQHHPTLTADQLPTFFERLNFNETKGSLVVRSAVKLLFL
SFLRVGSLAGIRWSEIDEGESILTIPAERMKSKKSHLVPLTQPMIDVLEP
LKDLTGDTGYVFDTGRGGCYPHMNPASINAYLIKLGYQGLLRAHGVRSIP
LTIGQDILGYKPEVIQRQLAHAIGDKVRQAYDRSTLLKERRDFMIAWSDY
LLDQGLEG
>SYNW2181 possible exodeoxyribonuclease VII large subunit
MSADRIPSFSVAELNTAIGNLLERGFAPRFLVEATVSRPQLKKGHLWLTL
TDGEASISAVAWASQLRQLRYRPEDGDGVTVVGKLNFWAARASLNVQVLD
IRPSLSTVLRQFELVRRRLEEAGLLDITRRRPLPRQPRTLAVLTSVPSSA
LADMLRTASERWPMTRLLVVPIPVQGSVAARIREVLGRLAEEASALGLDA
LVLARGGGSREDLAVFDDEDLCRDLAAFPVPVVTGLGHEDDLTVADLVAD
HRAATPTAAIVALLPDRHVALRELQQQRQRLRELRSRWLERQHQRLLDRR
QALALLTPQRRLQQLRQQLEQRRALLRALSPQRWLKQGLALVSNGQGMTI
DGVKGVRKKDTLTLSFHDGSIETVVTQVRPQNSSSTP
>SYNW1030 conserved hypothetical protein
MSPLIRPLRSLANGVGLAWWARVETTGPDVTYWFGPFLTRTGLEAELATF
LEDVGSEQPRSIRHTLLRTRRSEPLTTAAEG
>SYNW1173 Uracil-DNA glycosylase
MAMLELRDCEQCTGCDLALTRERVVISRGAATAPLMLIGEAPGAREDALG
QPFVGRSGQLLDRLLQDVGLNPESDLYICNAVKCRPPQNRRPKRAELTAC
RPWLDHQIDQVNPRVIVLLGATAVESLLGIKGGMTQLRGQWLSWDGRDVM
PIFHPSYLLRNPSKASDAPTALTRSDLSTVQQRLCER
>SYNW0342 conserved hypothetical protein
MARYALLRHTGAPDDPSGCHFDLLLEDGDACRTWRLAKVPALNGISQPAV
PLAPHRLVWLEHRSAAVSGGRGWAERVMSGHFSGSLPDNPADPLVLTLLD
GDLQGLLRIQAGQCSLTRT
>SYNW2099 phage integrase family
MPLTDSGVRSLTATDKMQKKSVGNCLYVVVEPSKKGGGKSFYGEIRFPPG
GGGQKVRVCIGPYGTAPGQWTLKAAKDEWTRIRAWSLETGRDPRELNGRG
RKQNQDQGPSKTLQDAIDGFLSTKTSLKEFTLTNYRRQLENQVRECIPGA
TPLRELEWDNGGREKVVALREYIEDRGSYDQAFRVQKVLAQALDYAILQG
WMRRNQNPATKQKGEESKHDPKHHPHIQWEQVPELLEAIHLNRCSGHVQS
VMALKLLLMTFLRAGALARLKWKWISRKENLLVIPGTTPGLKRTKKTEDL
PHHVPLTKEMNALLKQAKQMNGHLPYVFGPVREQSRYPHLDPESPNNLLK
GLGYREVLRAHGWRSLPLTAGQEVLKAPHDIIQRQMGHLIGDKVRKAYDK
SLMLEERRDFLEQWCKLLVKNGLKI
>SYNW1206 possible single-stranded-DNA-specific exonuclease
MSATSPHTWVLPAVVDASPLPQLPLPLALRTLLLRRGLSEEDVAELITPQ
ELPDACGHFPDLEAAVERICRACEQGEALAVCGDYDADGMTSTALLLRAL
IPLGAKAEPAIPSRMEEGYGLNPAMVDRLHGQGIRLLVTVDNGVAAVEAL
QRARTLSMDVIVTDHHSIPEPRPWMTALLHPATTPEASPYRGLAGVGLAY
VLASSVAERLGRMDAIQVARDLFCIGTVADMAPLTGANRRWLLEGLTTLH
RSRCEGVVALQRLAGLGETPLTAEDIGFQLAPRINAVGRLGDPVLVVDLL
TESDPGKTMALARRCDDLNRQRRDLCDAIEAEATALVESDAEGLIPPFLL
LAQSHWHHGVIGIVAARLMERYHRPVALLAGDGEGLLRASARAPQGFAVD
KALTTCADLLERFGGHPAAGGFTVKASQVHALHDRLNQLTQPWLDQEGAG
RPVRPEACLKLNEINWDLWAALETLTPHGVGHPAPLFWSRGCQVADWRTL
NGGHLAVTLQQGTHQRRAVAWRCSPLTPMPERVDVAYELKLNVWRGERRL
QLELKSIREHTDTVRLSCGERSYLASRKLGDDNAVTFGLTNAGGDHLDAS
ITKDQTVSCKDQRASHSRIQTLLEEAALALGLRA
>SYNW1145 conserved hypothetical protein
MACWLWDVLDKRWWASQSALDKIQAKCDNARNLSIDVDQWISDCIDLLKQ
GWQQYDRFSLRRGGDLATLAIDLLMQFEFVEANTWRSRFYELTLLSEELQ
HHIYPDGEPGICHGLVRNLRTAKKLRKGGKHENANLFLLPKDQWEKPINC
SAEEWANIIKPFNRRNIDELVDEYLARVELARHGLTTPKGKSAIETLEQH
ENDAHTKIKEAIQQGASADEVQLLVNQYGTRSNGFGLAKFAEQYRESLER
QQDIADALDDLLLRGEPPQIHLADYVPADWLPMFRVLRDGLKFSDEAIVM
TLMAGVAAMLPPQVRIRGRSMEEIPTVWVFHIGSSGTAKSVLLQWLINGP
MAKPIAFIDGWNEREQQRRKTAAADGEDLPAFRKRNLIYTAPSTQGIRAD
FAIHGEDVPGLLVRDELNGWLKQMADEGGAGVGDVEFWLSSYDGAYSNDV
FADAKKSREVRAGKLGVIGGIQPKVFLDQLEAGNANGFNSRPLFVHLPRS
RRQLVDGDVNTEKLSAVLGNLYLAALQDGNHAYVLSAVAEQLFTSLFNQL
ENLSLQACSEEVEALWAKGPGQVLRVAAAIHFIRIATGQEELVERGMVQP
ATVVSERSLQLAANLVMAGKTRAVELHERARNPMLELADKLLEKARKKQG
KAPGRGVALSSIRKSWSSKDRPTLAVLKQMALMLQSRGLVQVFDGGLSIR
VVR
>SYNW1667 partial phage integrase
MRKSGVVRMPQTSLNDSQVRALQAGPKRSTHALGNSLLLVVEPALKGGSK
RFVGRYRFPPGRSGKQKEYSLGVYGRGHGQLTLKEARDTWTKIRAWGLDS
GEDLHVYKQSVLPA
>SYNW0115 putative adenine glycosylase
MGQRSGAEHRDLSALAPELSQSLLAWWEIHGRKDPALKPWMFTKDGRWPE
PHEHLNVLECWIAEVMLQQTQLKVVLPYWQGWMKVFPTVDALAAASLEQV
RLQWQGLGYYSRARRLHAAAQRLAQGPWPRDLDSWMGLPGIGRTTAGSIL
SSGFNAPLAILDGNVKRVLARLHAHPRPPAREQVLFWQWSEVLLDPARPR
DFNQALMDLGATVCTPRNPDCGRCPWQFCCAAYAAGDPTRWPMTDAPKPL
PFQVIGVGVVLNAEGHVLIDQRLDEGLLGGLWEFPGGKQEPGESIEACIE
RELKEELGIVISVGEELITLDHAYSHKKLRFVVYLCAWVSGDPQPLASQQ
VRWVSPDQLDTFAFPAANAKMIEALRRSIN
>SYNW1662 phage integrase family
MPFTDSEIRALKVGEKMKDFSAGPGLRIRLEPAKKGGGKSFYGYMYFPPG
GGGKKVWVCIGPYGKGPGKWTLKDARDEWVRIRTWSQETGKDPRELKKEE
RAVVVEQQKTPTLERAATEFLERSHLKRTTLKDYRNMLFDQIIPKFGAET
PIKNLAWDAKQPDGKTGRQAILDFRKKIEGRGSKIASEKMLGVMRGVFAY
SIDQAWMNEPNPAQSSRFSKAQHKPQPNPSLDWDQLPKFFDDLERNDPNA
ALVILLAVKILVMTFLRVGSLTPAKWDEFDFKKEIWTIPADRMKTGKSHK
VPLTAPIKDVLNRLHTFTGETDYVFFSPRGREYQHVHRDSLNAHLKKMGY
KGLTTAHGFRHLALTAGQEVLKVDHEIIQRQMAHSFGDKIRGYYDKSQML
TERKDFMIAWCDALVEQGLIT
>SYNW0564 conserved hypothetical protein
MPRRHWLDPLARRVLQAAGQLPTSPAATSPPPAPPAWTMEVNRASREQWL
QLPGCSDDTADLLLRLQQGGVQFSSVEELFRLLELPEQQRRSWEPHLIVH
WHGDAPPQPAAAPLDLNNASADELEQLYWPEQRLQGLLRERRRGGFRDLA
DLQERLCLPASAIEALIGRVCFEAKRAGPSLPLN
>SYNW1180 hypothetical
MSAEFQSIDDQIKASYQSASQVETQARQLEARIAKIDGAKRYLPSRRYGQ
PIDIAKIRSNLTLTSLIAQDSAELAHFCGIHPGIRHRMDEEKEARALAAQ
ALQMRTEALRQQNQQRQQQVQQRSQLSPWQRGYGSV
>SYNW1807 exodeoxyribonuclease III
MRIATWNVNSVRTRLEQVLCWLEQTKPDLLCLQETKVDDPLFPMQAFENA
GWQVSIHGQKSYNGVALVSREPLEDVRCGFVGELPDDAEAATLGEQRRVI
SGLLDGVRVLNLYVPNGSSLSSEKYPYKLTWLGCLKRYLDAQAERGEPLC
MVGDFNIALEARDIHDPDRLSGSVMASDAERDALREALGNRLQDAFRMFE
PDAGHWSWWDYRTGAWDRDRGWRIDHIYLCEELMGLARSCSIHKQLRGNV
QPSDHAPVSVDLDWPPADDDQDEDDQLF
>SYNW0369 weak similarity to phage integrase family
MRHTATSKIRLRVRSGERCVGEQAVLPLAWEARNVAEAMQWIGRIYKLIH
TGDHSLKTARDAVLGKATTHVEKKDWTWDQICEKYRNHLQTRKNKIKDTT
FEASYGRYFEVMLKLLRSNTPPRTGAQLLDAVLSAPRVNKKPGKMFGTPL
KTWGEQDASRLECCLAIKNMLTYAVSMDYRPGLWLIPEALYEDLRGSDSA
AAALKGKSDLTDIEILELIQTIEQRSPGWASVLRLCATFGLRPCEADRNR
HLEVRVNSRGQEQLHCSYQKKAGKRLTPQRWLVPLPFIDHGGERVWWDGW
RGLNDLPWPPVERVDGAALGKFLRRQPEWKSLVAEKAKQGLQLKPYAFRD
SFTHRCARFGIADADAALASGHSVKVHRESYINTSTETMLDAFERAAGRN
>SYNW1051 conserved hypothetical protein
MGSSRGESFGNFVDRIPMKMQPPGAQAETRVSSLLQRQGWQLLDRNWSCR
WGELDLVLHKNEQLLVVEVKKRRSLAWGPWSVDPTKRRRLGRAISCWRAE
HPIQTDWLLQVAVAVVPLPPSQGAPRWCRLDRLC
>SYNW0224 probable deoxyribodipyrimidine photolyase
MPSTPSPHNPGDLPRQFASRDALEALLVEEFPSAEGPLSPIPGGRQAAEA
KLAGVQPARYAKSRNHLNGAVTGLSPYIRHGVLTLAEVKQAVFERIRKRD
DGGKLINELGWRDFWQRMWLDLGDGIHDDQEAFKTGHDASSYARELPQDV
RDGRTGLACMDGFRDKLVTTGWLHNHARMWMAAWLVHWRRVHWTAGANWF
LEHLLDGDPASNHLSWQWVASSFSHKPYFFNRGNLERYSDGRYCEECPSA
ADCPFEGSYDQLESQLFAPMPAIRDTGTGRNRQRRNGGGASAALARPKR
>SYNW0218 NUDIX hydrolase
MAPLPAPEPFELLDTVEAVDARKIRFERNRIKLPMGVEATFGMIRHPGAS
LAVPITADGHVVLLRQYRFAVQARLLEFPAGTLEEGEDPLESMQRELGEE
AGYSAARWDSLGPMLPCPGYSDEVIHCFLARELTPLENPPAGDEDEDLEV
VLMTPMDLDARLGSGDEWLDGKSVTAWYRAKQLLGLG
>SYNW0779 conserved hypothetical protein
MPRPCSVLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQL
CQDRRVQGLVVGLPLDAAGQPTAQADHCLRYGRRLAQALQLPLAWVNEHS
STWAAGERHGLKGDRSGRLDSAAAALLLDQWLREGPDLKPVQGLLGGAGA
ELVDGGS
>SYNW0636 putative DNA helicase
MAASGLDPSKIFPFPLDDFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYA
IHRALAHGQKVFYTTPLKALSNQKLRDFREAYGDDNVGLMTGDLSVNREA
SIVVMTTEIFRNMLYAEASEQDDPLADVEAVVLDECHYMNDSQRGTVWEE
SIIHCPPSVQLVALSATVANAGQLTDWIQKVHGPTTLVLSDYRPVPLQFS
FCSAKGLHPLLNDAGTGLHPNCKVWRAPKGHKRKGRSAKPPQPEPPPISF
VVAQMAERDMLPAIYFIFSRRGCDKAVRDLGIQCLVNKEEQARIRARLKA
YSSENPEAVRDGIHADALLRGIAAHHAGVLPAWKELIEELFQQGLVKVVF
ATETLAAGINMPARTTVIAALSKRTERGHRPLMGSEFLQMAGRAGRRGLD
SRGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLLQRHDLN
KARELVERSFGRYLASLDLVEEEDVLSQLRLQLGQLEGVAGDIPWEDFEE
YEKLRGRLREERRLLRILQQQAEETLANELTLALQFASTGTLVSLKSPQL
RGRVTPAVIVDKIEGPGQFPLLLCLSDENLWLLLPCQSVVSIHAELSCLQ
VDGVTAPDLHKAGELRHGDQASGGLALAVAHVARRHDMTMPQYDLAGEVL
TQARTVQALEQEQEAHPAHRWGDRKQLKKHRRRMEELEQEIEERQRLLHH
RSNRHWETFLALLEILQQFGCLDELTPTEIGRTVAALRGDNELWLGLALM
SGHLDDLSAPDLAAVFEAISTEVNRPDLWSGFPPPPAAEEALHDLSGLRR
ELLRAQERLGVVLPAWWEPELMGLVESWARGTDWSDLIANTSLDEGDVVR
IMRRTVDLLAQVPYCEAISEQLRSHARQALRAINRFPVAEAEDLLKQAGD
QNPATERAA
>SYNW2416 possible phage integrase family
MPAQQWEKTLRRQIKDNHGFGWNLIAQSGKTKLTRVHEDGTKSAKVLPIE
WKATNSVQILNAVTRVRQLMESRNLSLAEAVRLDTAELAVPSSHSGVAEQ
GWSAVVQEYLKGKQGLRSSTLSDLRTRLNRLLVCLDQKPKPRDSRALLKR
YAQLFFSDMESGGEGRRRNIQSIVAFLRYAVDRAGAHQCWLPQEKSFTAE
LIGVSATSTQARLTPPIKSPDLAALLDQMEADGRHDLRLATALISLFGLR
PAELALLSVKEGRLYAGAVKRNTASLAQKPKPPRLCLPLDIEGREGEGMK
ALQLYASGLVKLPQSVLNEISKVEEKQSFKQVGHAYGQLLRRYAPWQNLV
RSNPDTTIYSLRHSWAWRCHVCSTHPLHVRQASALMGHTPTVHMATYGQW
VDEASLEAAVERYTEGLVTADY
>SYNW2182 conserved hypothetical protein
MSQPNDLQAQIETWREDAAGLSYEEALQALDLLLAELQSDTVPLAELQQR
VAHGEVYLDHCESLLKSVERAVDTLDPDSLEPTTDA
>SYNW0348 Staphylococcal nuclease homologue
MKAATALLLAACLTTNVNAATVVSVGDGDTIRVSEGNKKITVRLACIDAP
ERSQQPWGARSTELLKQLTPIGSQVTLRVQTTDRHGRVVAELINYQGNVN
KLMVGAGQAFAYRKYLRKCDAQKYLGIEDEAKRRGIGIWSVGRSGITRPW
DYRKGGGSSITNSSSSRKYRCKDIGSWSRAQQLLTKGHRYLDGDGDGEAC
ESLR
>SYNW1777 conserved hypothetical protein
MNHCVLEVEVIDAPTVRYTQDNQTPIAEMSVRFDPLREGDQPGELKVVGW
GNLAQELQSRVQVGQRLMLEGRLRMNTVPRQDGMKEKRAEFTLARMHPIS
PGSAPQPSQPTAAPTAAAAPPAKAEPEAASWNAAPLVPDTDEIPF
>SYNW0880 possible phage integrase family
MPRVSETEAWIKPFRRQIAETCGESWYVRNNRGRIRLEVRDAGTVSLPFE
WTARGSALALPRIQQIFKRWNGGQITLAAAAQNADTSSAHQKLDFSQLIE
KYRAFVPNAGDTTWQTFYLPVLRNCAKAFDGRPPVDGEALAMACLSQWEQ
GSRMRQTSRQKLYGFLNWAVQRGHLKPIYSPPAALPEVLKPKRIGYPLSD
AQILQLLDNLPEGEAHDRWRFAIQLCAVYGLRPEELRHLRIKDGASGEEL
WTIYQKSMGGTKGAKTEPRRLHPLLLRDADGSAIDWKLQARLQVGEQLPP
LNRDGDGGQALNQYLRRRKVWMALRGEAEHQSEQLTPYSFRHRYAKQAHA
ARLAVAEISEAMGHTIEVHLKSYARFKPDATAANFAAVNV
>SYNW0801 possible Staphylococcal nuclease homologue
MPGLSAGSPQPTAPLVNPRIGVIQKLVRPGDVGDFELRARDVYGRLVGRF
LINGQDLGAELVRRGAVFSWDGFLGRCDDLDYDGIEAKAQAARRGIWSAP
AGVKRPWDVMEASNDGEP
>SYNW1144 phage integrase family
MKSNRHGQSRVLDTNQLDLLISNLSDQYHQLVAEVCRRTGCRVGEATQLT
WGMVSESAITFQRGITKGKLASRSVPVTPVLWEALRAWRDVWVVRQGRDP
VAGDYLVPGQFAGSCLSTRSFMDALEKAAAESGLEGVSSHSFRRSALTSA
HSAGVPLRVLMALSGHKSMSALQRYLEVTPAQRVAAAAAFA
>SYNW1321 putative ATP-dependent DNA ligase
MKAFQALFDRLDRMNGTNAKVRALAEHFRSTPAADGAWALQLLLGKRRRR
LITGRRLRDILRDRGGLPEWLIADCHGQVGDSAETISLLWPAVKDRIQGQ
ATDLPSINPEQPLHWWMETLLPAIGALKDDKQADAVIHLWHAVPDERHFI
VNKLLTGGFRVGVSTGLISRALATAFELEDTLVVQRLMGGFTPSAAAFLA
LSRPEAPEEQQSSGVPYPFFLASPLEPERLVETPASDWRVEWKWDGIRGQ
LIHRGTGVYLWSRGEELVNDSFPELVDVAAALPQGTVLDGEVICWREGDE
TPLGFDQLQRRLGRKTVGSTLKRECPMRFVAYDLLERSGTDIRQRPLHER
QHQLDDVLNHVDHGEAWRLHRSPSWVLQSWGELDQQRNNAREVRAEGLML
KNIDSPYLSGRKRGHWWKHKLEPMTLDAVLLYAQAGSGRRANLFTDYTFG
LWSDAAEPQLVSFAKAYSGLNDEEILELDRWIRRNTLQRFGPARSVKAEL
VFEIGFEGIHPSKRHKSGIAVRFPRILRWRRDKPADEADRIQTALSLIRD
QPEASL
>SYNW1189 possible phage integrase family
MPKLRSGEEWAKSLRQDIKTEIGLGWNVCGHKRSDGNLSGSCKLTHRTED
GRRSSVMLPFPWEASSKRQILNKVIAIAKALQADPQKELNEVAKINADTL
DEQAEAQSGHGLTTNKGWDAVLEKFLKSKSSCRWKTLRDYDYRLERAMAL
LNHHKPKPRTGLGLMQAYKEVHFLGPNGEEHKPGAQIEAGASGRKKSLDD
IGRFLKFAVDVCGMPKRYLPPDRKQIEELVGFKTVSTTHALTPAIKPDMF
VELLDDLLEEGRVREYVAVAIVGYCGIRPSELATLHQVDGQARVVSTKRN
TKQMKHPPEARDIFPLEIKGRNREGAKVLQQFFGGKAKLPAALQVQIDRM
KPDHPNHIDSFSYVGVEFRQMLCVRCRAWKNLKSNPGTEDITPYSLRHGF
AWRANYGDTKMSHRAAAKLMGHDLVTHQRWYGRWIDAASLKAEVERVNSE
M
>SYNW0744 conserved hypothetical
MSSEAQLTEDLTDDQRKAAEAFADWLTSPADGTPFVLSGFAGSGKTFLSM
RLLRMVEVHGLCWTVVAPTHKAVGVLRQALDLEGLQPTWYPSTIHRLLRL
KLKRSADAEVCEPTEQTAMALENLGLVLIDEASMVDSTLLGIALQCAHPF
KTRLVFVGDPAQLPPVGEDSSPVFSMQRACAATLEEVVRHQGPVLQLASR
LRDGGLPCQNPPALPPICNDSGQVRCLPQKDWLDQARQALRQASLQDNPD
AARILCYTNRTLERLVPLARRAIHGDMADQMAVLPGEVLISRAAVMAPAS
RDGEETGEEPDMVLGSNREVTVRDVTPESCDLMDFGLSPADGAVPVIETL
SAQVSAGELELCLRLQPPVGSEARRELDGVMQRLRQQARDAGKQNGRAIW
RRYFLLRDAFASLGPAAVLTVHRSQGSSFGEVFVAPDVFRADLSIRQQLC
YVAVSRARTGVWLIGGTASSATARAWRDEFASTLSAP
>SYNW1818 conserved hypothetical protein
MKAGELSLGQSLDLPALDRVDTLAQELALLQDKGKRRIAILGSRHVPVVA
IHLVQLVARSLVQEGHSLITSGSQGVNAAVIRGCLDVDASQLTVLLPQSL
DRQPTEIRDLLDRVLHLVEKPEQDDLPLPMASSLCNQEIINRCDQLICLA
FHDSETLLSSARTAEDMGKVVSLLYFD
>SYNW0295 Methylpurine-DNA glycosylase (MPG)
MEPIPAPFFARPAEVVGPELIGCLLVKRQEDGSLLWGVIVETEAYSQDDP
ACHGYRRRTPQNETLFGEPGRFYVYVSYGIHQCVNVVTDRSNWANGVLLR
AAALPGEPERVAAGPGLLARRFGLTRSNDSWPVTGEHDLWLAPRLASFDS
PELVTTTRIGISQGQDLPLRWYFRLSRSVSRRAKGDRTPSLSQAWFPSPE
FG
>SYNW0847 possible alkylated DNA repair protein
MGDDVLQIQSESTTLPWTLHRSWLPPLTAIDWSSTLMRRVHWQQPIVQVY
GRHHPVPRLTMFLAEQDVSYRYSGTRHCGAGWPNWFLPMLNQVNTACGCR
FNGCLLNLYRHGEDRMGWHADDEAEIDQSQPIASLSLGSNRDFQLRHRHQ
RQHRHTLELTSGDLLIMHPGCQRDWLHGVPQRRRIKTPRINLTFRCFQPR
>SYNW0665 possible Recombination protein O (RecO)
MAERTLVGLALKVGPLGEHDRLLSLLSDAEGVTRLAVPGARRPKSSLAAA
APLTLLELQVGGRSGLARVRQLRVLHSHAGLGRQLETLSAAQAFCDLCLQ
IGREDPVEGLLATLQLHLERLDQRSDCLDELLASSVQGAIHLLTLGGYSL
PLQSCCLSGAPLEPPIGTWEWRCSLLPMDGFAIDRQPGAAMTLNPSELAL
LQRLTRADLPRRRDGELMGPRPVWLRLLAVVEIWIRTHLQRGNPALAMLR
ECVTAKQVSQHGADAANS
>SYNW2241 weak similarity to phage integrase family
MFRVCSNRVVPKVLEKRKVAGIKGDIVLLQRGHNSIGYYYREYRSLTRDY
KFQKIEGAKDMYEACEQAVDIAFKFKSEFSKEKKVISEQVGVYAPKRQSR
KRYKPIKAAIDEYLGEEEKRARSGLIQPGTFKTKNESFRLYIEPYIASKG
IKYTQQIDHSTFEEYFIYRARTTALMRQRELAFIKQWINNYLLPNKLLNE
MPSKAWYPRQIVRQTDRMANPAINPADWKVIIDYIRDDWRHYHEQGGMKG
PATRIWRDAFWHFCLFMKNTGMSPEEILKLKWKNVEIRDIGRIDSKGERQ
EWLVAYINTIRAKTQQMREIPTNQGKELKRYMQMLKDYCAKYKIPNSIGP
NTLVFGNPNLNFEPYGHWRYGRCWREIREELADKLKGHKFSNHPYTLYSM
RATFIEDHLRRGTDIFLLARMAGHDVKELMKSYERLDIRERTKEITTIEF
GKQKSKEEDFLIDLMQPEDDQI
>SYNW1342 putative endonuclease
MRKKERAQVVLERLNDQYPETPVPLDHSDSFTLLIAVLLSAQCTDKKVNE
VTPALFAAGPEPAAMAQLEEQEILEHIRQLGLAKTKAKNVRRLAQLLLER
HDGEVPQSFEALEALPGVGHKTASVVMSQAFGVPAFPVDTHIHRLAQRWG
LSNGDNVQRTERDLKDLFPREAWNRLHLQIIFYGREFCTARGCDGRICPM
CRELYPNRRKPVITRKA
>SYNW1108 possible site-specific recombinase
MTAASQHSGSTAQDRTKKSVEEVTRIGFSYERVSTKSQVDGVGLKRQHDA
FEPFCQRHGLIPNADPIRDEGLSAFHGTHKSKGALGAFIQARRDDLIPAG
SVLVVEEWDRFSRRTTSVSERMLHELWDLDLALGIVSQDSIVTEELYNEN
IGLSVMLKVLQNESNAESSKKSRRIKNVWQERRDSYLNSGKKFLSLSDAP
KWLAIGENDFVPAPLAETIQLIFELAAKQGLSSVQIAEELNRRGLSTATG
GTWGNANVCKVLRNDQVMGHKCWGDGIISQGYYPVIVDAKTVELARENVK
RRYSAPARGRTTRKNGELGPCRNIFKGLTYCCCGAPMVDTSSHSGKYLDL
VCSAQNDGRDCIVKSKQRWKVDEELLLRAFMDRRWERFFKNPGTGPRIRD
LQDRLLEQERLAGELRTQAKAAEDNASKAFTQTNADKDLLVFYGELAIKA
KKQANAAEDKTKQTRAELEAFQALPDGADMKEQIRIKLEEFLSLPNRADP
EVRNKFNQWVQTLGARIIFMNTNPVRVRITLKDLPIDHWWREIRPDVTDK
QLLNSIDDVYLYRRGDDCVIDQTIQDLAELRATPQQITEQREKLESSIPV
PKRIKSPTFTAEEAGRLSAGARADAVDWAKTA
>SYNW1367 carotenoid binding protein
MFTLDKARQIFPDTLSAAAVPAITARFKLLSAEDQLALIWFAYLEMGRTI
TVAAPGAARMALAQPTLDEIQAMSFDEQTKVMCDLAGKINSPISARYAYW
SVNVKLCFWYELGEFMRQGKVAPIPQGYRLSANANSVLEAVKKVEQGQQI
TLLRNFVVDMGYDPDVDDSQVVTEPIVAPTPVDQREEILIPGVLNQTILS
YMQLLNANDFDQLIDLFLNDGALQPPFQRPIVGRDAILKFFKRDCQNLKL
MPQGGYGEPTEGGFNQIKVTGKVQTPWFGREVGMNVAWRFLLDENDKIYF
VAIDLLASPAELLKLGGK
>SYNW2039 conserved hypothetical protein
MPGHTSSHRQRCGKHLSLGGLALTLLLCPATTAQPRQNWLTPQPKPAPQA
PRTAPATPCPVSGNPDPLLGPRTRMPGRWVGRGAVKPDLPIVVMAGHADS
QAMASAGTPGFAVDKRRQAPMDPRMRDELYWNLQVQKAVVRLGRTRGLNI
SAYTPPALTIRNDEDPRTNWSQAKTRSARGDYILEIHFDAYRPYGFGSGL
IPAINRPLHAVDESLAQAFGRFPRLFRSGLGGPRRGIGILEIAMLEPPLE
NKLRNPSTRSQTLECIAERVVNALVQGVS
>SYNW0181 UvrD/REP helicase
MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGAD
PAQILAVTFTNKAAREMKERLEVLLAQKLAQSQYGQPWSTLPPVDQRQLR
SRIYREVSKELWIGTFHALFARMLRYDIDKFKDAEGLSWTKQFSIYDEAD
AQSLVKEIVTQELQLDPKRFEPKKTRWAISNAKNQGWLPDQLEANAEGQR
GKLTANVYRRYRRALAANNALDFDDLLLLPVQLLQQNEQVRSYWHRRFAH
VLVDEYQDTNRTQYDLIKLLVTDGKDPQTYNNWSGRSVFVVGDADQSIYS
FRAADFTILMGFQEDFGDQAPDDATRTMVKLEENYRSTATILAAANALIA
NNSERIDKVLRPTRGDGELITLTRCDDEIAEAEAVVHRLRTMEAANPELS
WGDMAVLYRTNAQSRSIEESLVRWGIPYIVVGGLRFYDRREIKDLLAYLR
LLVNPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDAEA
VRSLGGRSARGLLQFCELLHDLRRQVQEVAPSELIQQVMEKSGYISELIA
EGTDEAEERRRNLQELVNAALQYQEENEEGDLEGFLATAALSSDADSKDT
AADRVTLMTLHSSKGLEFPVVCLVGLEQGLFPSYRSLDDPASLEEERRLC
YVGITRAKERLFLSHASERRLWGGMREAAVPSVFLSELPEALVQGDLPQS
GGAALRRERRLERLTRVDRDRPSSAPANAVRRRQAGPAPGRSWSVGDRVT
HASFGVGEITHTFGSGEKVSIAVKFAGMGPKILDPRLAPIEPIAADG
>SYNW1346 phage integrase family
MKINRFGKAEVLSTAELDLLLSVLPENHRVLATLLRRTAARVSEGLQLKW
QYVGKTEIIFAAPTTKGKKRTRTVPIHPDLADQLSSWRQVVAPLNGPDNW
VFPGRNPGEHLTRRGFDHALRKAAGEIGMQGISTHTFRRSFLTAASQNGI
PLRNIQSISGHSSLTMLSNYLDVSESAKNDCVMAGA
>SYNW0905 conserved hypothetical protein
MTSLDDPESIRHFQSLCDACQELTTRYHSPSELRLYADGYLHALRRCGSL
DSSQQHRLEQLIDRWIMDPSSFIGPDGDVSTLYLRRPHSY
>SYNW2389 Putative DNA ligase
MAEQQQRAAELRSLLNRAAHAYYVLDAPVMEDTLYDRLYRELQQLEQADP
SLLSADSPTQRVGKAPATGFHSVEHRIPLQSLDNAFDHGELKAWHERLLK
VLDRADDSPLPLVGELKIDGNALALSYRHGVLERAATRGDGSSGEEITAN
VRTISSIPLRLQIDDPPEWVEVRGEAFIPDDTFAAINNERAAHGDALFAN
PRNACAGTLRQLDPKVVAARRLDFFAYTLHLPSDHSNSPECQWDVLAWLE
QAGFRVNPNRELCDGLNGIERFCDRWEQQRHQLTYATDGVVVKLNDLRLQ
DEAGTTQKAPRWAIALKYPAEEAPSKLLKLAVQVGRTGAVTPVAEFEPVA
LAGTSVSRATLHNADRIAELDLHLGDTVVVRKAGEIIPEVVRVLPELRPT
GAVPLELPDHCPECGSNLVRDDSEAATRCINSSCPAILRGGLRHWVSKGA
LDVDGLGNKLIQQLVERGLVRSIADLYRLDAALLASLERVGEKSAANLVA
ALEQSKQQPWHRQLYGLGIRHIGEVNAKALAAAYPNSASLAAAEPESIAA
LHGIGPEISSSLQQWHANPPNQRLLEDLRAVGLSLEANTSELNANSTGEG
NSSGALLGKTLVLTGTLPNLSRSDAKTLIEGAGGKVSGSVSKKTDYLVAG
EAAGSKLSKAESLGVEILTEAELQKLLST
>SYNW1578 Staphylococcal nuclease homologue
MARTTAKECFARRGHVLESLAIGMSKLVLGLLVFTPQPLTASEVIRVVDG
DSLIVRLNGIPQQIRLACVNAPEIGQYPYGRLAMNAFRGLIPADSAITIY
PIKKDRYGRTVAHVSTPGGVDVAGELVRKGLVFVYTRYLSDCDGPNLLLL
ESQARDLKQGIWSEGKQGITRPWIYRRGTNARLRCSEISSWDKAQLLLQE
GHVYLDSDNDGEACEGLR
>SYNW1146 possible phage integrase
MSEVGDLVKAVNQGLKAEKAGVSIRQRRNKLCLRAVLPHKDGSNHEVQYD
VPTGCDATKAGLNRAKTLAIKLSTDRKLGTFSWDGWLQSGETTQAPEEPS
ESQTIGAWTARFKADWYEKRDVSTTAQKSQAKRTWDRIEASFKKNPDTSD
LLTIEALVAVAKSLPAASKARHEFCQKAKALAKFAELPTKELDKVHTKYL
TRVPKLPLDEELFEFALNNRHSSIYGWCFAALLVYGCRVSEVFSLVPSET
GATASVLGIKQKNAPPEQREALALPKEWIEPLEICTVERPNEFLDPVAYD
SNKTKGHVDRMNKWLQSRWCGTVKLENSNLRHSWCIRSILKSQLGDGVAA
KAAGHDISIHMRTYAAAMQKRDILRAAENL
>SYNW1177 Transcriptional-repair coupling factor
MPLRSLVTQLRSAALTGELLQRTERDARLLLRGAGRISRALVASALAQKE
GRPLLLVVPTLEEAGRWTALLELMGWSSASLYPTSEGSPYEPFDPTSEII
WGQLQVLSDLIGTDDPAGKAIVATERCLQPHLPPRQALEATCRTLKKGDE
LDLDELAETLARLGYERMSTIDQEGTWSRRGDIVDIYPVSSELPVRLEFF
GEELDKLREFDPATQRSLDPVDRLQLTPTGFSPLVADQLRESMPEGLDRL
LGDEATEELLEGGTPEGLRRLMGLAWGQPACLLDYLPASAAVVIDERRHG
VAHGQQWLDHAIDHYSDMASELGLSEEERDLLWPAVLQRTIDKAYGLAEA
FHGFDMAELLEEDGHPNSFDLASRPMPAYPNQFGKLGELIKGFQKEKTAV
WLISAQPSRAVALLEEHDCIGRFVPNPADAPAIERLIEQNTPVALKSAGT
AELEGLQLPAWRLALVTDREFFGQQTLGSSGYVRRRRKAASRTVDPNKMR
PGDFVVHRNHGIGRFKAMEKLAVSGDVRDYLVVQYADGLLRVAADQLGSL
GRYRATSETPPQLSKMGGAAWTKAKERAKKAVRKVAMDLVKLYAERHQAN
GFAFPSDGPWQNELEESFPYEPTPDQLKATADVKRDMEKAEPMDRLVCGD
VGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIK
VALLNRFRTASERKTILEGLKGGTIDAVVGTHQLLGKGASFQQLGLLVVD
EEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTP
PPLRRPIKTHLAALDPEAVRSAIRQELDRGGQVFYVVPRVEGIEDVAAGL
REMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPR
VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNGSLSDNARQR
LRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEML
QESLAEIQGQDIPSVDDTQVDLPVTAFVPADWITDPDEKIAAYRAAADCR
SGEALVELAAGWADRYGALPAAVQSLLQLMELKLLAKRCGVARIKPEKPN
IVLETPMEEPAFRLLRQGLPQHLHGRLVYQSGKALQHKVMARGLGVLPMD
KQLEQLMEWLRLMAAQIPDADGTTEAQRLEAEGQRNEAVLQV
>SYNW1493 conserved hypothetical
MAIDASRIVSVIPGYNTTTVDAVVTTASGDEEMLLVLDEDGKLLAWKWAD
RVQPIETTALEFTSDLAAGRLIAARSKMSLQLQQELAPGDLERKWSKLVR
VAGGFRKVKDAVIAHQGGSQQLVLVAVEFGKATSNLFVIFDERGRIINVD
ISRDFV
>SYNW0360 weak similarity to phage integrase family
MAPDDSRPRWEQRLVETTEPWNGWSISRVRDRIVLRVRKRGRPAETAYLP
RPNTWDEVHHRNAIRWIEAVYKAWDNGEKTLKAAVADAHDTSDLQGEEKA
KTWAQIADAMEASRVQQSQKCSAHTFRKNWRPFIDYAVRLINTGKAHDGY
GLLKEALKNWEGAPTMKVECGRYLGLFMQFAVSRHKAPASWLITEFDKDE
LIPKAPKPRLKAVLDDLEMLRLIELADSVNVRWGNVFRLLTQFGLRPIEL
QHLSSRVNPVTGKPAIWCNYRKTGGEEETDPRFLEAMYIRDGNDQPVVWP
LEQAMADGTLQLPTGRDGDVRKLSGSAVNCYIHRKSRSTGKPSGAVQIYW
AELVEHYDKQDPSEWLRPYSFRDTYSIRCHREGVPVASICDAMGHSEAVH
SHSYRTMTLGMRTRDFAAKTGTIPLP
>SYNW0370 possible integrase/recombinase
MTAGGWKSPLNHSSKSDLALTLDPQKTLSDKSSDKLPPVLVGMDKAEALA
YVSRLFDAAQAGAVLWSDSLLLKRFLAQCSRTGSQETQDGYRREIRHYVR
WRDRVHPHLHLREIDSTLVEDWIAELRQQVELGDLKPRSFNRRISAISSL
YRWASEATRSAVSGVPRNPVPRRTGLSAAKLAKPLSEADLTSVFGAISAV
KVKGSTIAARDLVLVRGSYLIGCRVSELIALKWQDIERLETGGQIHLLGK
GSKPRTVRVSEETIQLFESIGRGEPDQWLFPSSRRKGPLTRQAVADRMKR
WGC
>SYNW0395 conserved hypothetical protein
MNDPFKLLLIGDSDSQLLACEALCRFPSDLNVQVTINAIPREGTPDSILQ
RAAALGDLWRLDMGQLLTHSELLHFDAIGVYLTGSKISDFRLALGLLPSR
ERPLLFCGFNGVVLEKFMEGMSWRLGYDLVCLSGPRDREALDRMLEGSPF
AGQRTVLTGLHRQEISDDQLLDQEQRRKQLVFAEQVVMPSSPADRAEMVR
ILADLARRSPDWEVLIKPRIAPGEATFHSITDHISTTLQQALGHPPDNLR
FDYRPLPDLLRQARLTATISSTAFFDALDMGCRPLVMADFGINPANGSHV
FAGSGVWRCLDQVEDLDALDRSLPSPDADWLAWMGYGTNLDPVDLIEALG
QLRADPPERLSTTSGYLSNANLSFTQLRRDAEQAIGQKNWEEAQSLLQLG
SLMRPTHRNVARRLRAVQQRNRIIRRLLLSLTYRDVG
>SYNW1748 Phage integrase family
MSVTRVNVILGAEASAMDLRNSLNALNAQLAVQGTRLRIEQRGQSLNLRG
PLPLREETSKTKVQRISLGLRADAAGLQEARESLDQVQRQLDRERFNWED
WQSKPRGSTGTGADAAIGSFEQAFFSDPRRRRAAAGSRTTWSGAYLPYLR
RLRHLSGEAPLNAALLLQTLRSYEDGSRSRQQCSTALAALAQHLGLALPE
DWRQEAGGYGLHRARFRQLPTDAQILEAVLRIPNPRWRLAYGLMATYGLR
NHEVFFCDLSALAEHGDRVIRVLPTTKTGEHQVWPFQPEWVDRFSLTSLG
SCEEALPQIQTDLRRTTLQQVGRRVSEQFRRYALPITPYDLRHAWAVRTI
HIGLPDTVAARMMGHSVAIHTRTYHHWITRRDQQQAVDAALARQQA
>SYNW2362 SNF2 helicase homolog
MSLLHATWLPAIRTSGSSGQPALLIWADTWRVATPEGPGLTPALHPFTLE
PDDLKAWLQERDLLPGGSIDATACLTLPSRTVKPRKSRSKTAEPAPEEPI
WTGLPMQAGEPIPKQTEWWPWQVQGLAVEPSAATEWLSRLPLSGRNPDLA
DELRWWSHLQRWALSLVARGRWIPQMELSKGEGYPHRARWVPLLNREEDR
RRLEDLAASLPLVATCALPWREPMGRRSNRMTRLRPEAMRAANPVACCRP
RSGRLRVATLLEDLVDAQLRKDFEPSTDGLDPLLTLWQDALGSETGVIEI
GDEQAERLASASFHWREGIAGDFAAARTCLELQTPAEGEELWELRFGLQA
ESDPSLKLPAAAAWASGADQLQLGEVTVEQPGEVLLEGLGRALTVFPPIE
RGLETATPDTMQLTPAEAFVLVRTAARQLRDAGVGVDLPPSLSGGLASRL
GLAIKAELPERSSGFSLGESLDWSWDLMIGGVTLTLRELERLSGKRSPLV
RHKGAWIELRPNDLRNAERFCGANPELSLDDALRITATEGDLLMRLPVHR
FEAGPRLQAVLEQYHQQKAPDPLPAPEGFCGQLRPYQERGLGWLAFLNRF
DQGACLADDMGLGKTIQLLAFLQHLKAEQELKRPVLLVAPTSVLTNWRRE
AEAFTPELAVREHYGPRRPSTPAALKKALKDVDLVLTSYGLLQRDSELLE
SQDWQGVVIDEAQAIKNPSAKQSQAARDLARPAKGNRFRIALTGTPVENR
VSELWALMDFLSPKVLGEEDFFRQRYRMPIERYGDMASLRDLKARVGPFI
LRRLKTDKTIISDLPEKVELSEWVGLSKEQKSLYSKTVEDTLDAIARAPR
GQRHGQVLGLLTRLKQICNHPALALSENAVDDGFLGRSAKLQRLEEILDE
VIEAGDRALLFTQFAEWGHLLQSWMQQRWKADVPFLHGGTRKNERQAMVD
RFQEDPRGPQLFLLSLKAGGVGLNLTRASHVFHIDRWWNPAVENQATDRA
YRIGQTNRVMVHKFITSGSVEEKIDRMIREKSRLAEDVIGSGEDWLGCLA
GDQLRNLVALEDT
>SYNW0920 probable ATP-dependent RNA helicase DeaD
MNDQQLGETPCAVDLSASSLPEQATSEQGSADVFTTTIDAQQPESGFDGF
GFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFA
LPLLERLASGQKTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYG
GTDFRSQINTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEM
LRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKRYLKDPAEVTIR
TKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFARTKAITLTV
AETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDV
DRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLE
RATGQPIEAMEVPGNSAINQGRLDRLHKRLSEAAHNERSYEEEAALLKEL
LQRIGTELELSPEQLAYAALSMAIGPDPLLRQKGDDEWIHNNQRRDRDRD
RDRGGERRERRSDRPARAPEENMQRYRVEVGHRDRVKPGNLVGAIAGETG
LQGRAIGRIQIFDNHSFVDLPKGMPEDVFNSLRRLRVMNRELQITQAS
>SYNW0689 conserved hypothetical protein
MPLHTISPYSFDVGSSGSVSAIQPRQWQTQLIQLLRRRLDGKATGEKDVL
VSAGPGAGKTLGALLAFRSMRQEQLLQHFLVFCHRTSILEQWQRSAARVG
LELVSWPCEQKTLSQADGLLLTYQSASRQPQQLATALDPWPASTLIAIAD
EAHHLGLDPEEPGAAAWSQTFEEQTSQCRLRLGLTGTPFRADNLGFCAAR
RIRTIQNGELVEQIQPDLCVEPRELIAAGDVRPLEFHFQDGWVEHSQEAR
PDRDVSPLSQEQRESWRARNLRRAIRLADSSCIGQQVILQAQRRLARVRQ
QQPNAAGLVIARDIEHASAIATLLEDDGDRVDLVHSQDPEAAARLDGFQA
GAADWLVSIDMCAEGFDAPRLRVVAYLTTVVTRSRFLQGITRAVRMTPEL
AEQEPIPRNPSYVVAPADPLLMGYARSWSVAEPYVLTSQDSDQAPLSGFP
GHGRGPSLPLEAVNDGAGAMIRLKTPQLPSFLQR
>SYNW1757 putative deoxyribodipyrimidine photolyase
MSSLQIVWFKRDLRVDDHRPLLEAAARGPVLPLYVVEPELWQQPDASERQ
WLFCRESLLELRQALAELGQPLVVRSGDVVQVLERARRQFGVDGLWSHEE
TGNGWTYQRDKRVGAWARAHGIQWGEIRQFGVTRRMRSRNGWAKRWEEQM
AEPITPAPAGVPALEEIDPGVIPERPCPELLPDDCSQRQTGGRSIGLGEL
RDFLQHRAPCYQRAMSSPKSAFTGCSRLSAYLAWGCLSMREVLQTSRHHS
GRGVSSFESRLHWHCHFIQKLEDQPEIEFSDFHPYMRGIRETNAERLAAW
TEGRTGVPFVDACMRALKAHGWINFRMRAMLMSFASYNLWLPWRDSGLHL
ARQFVDYEPGIHWSQCQMQSGSTSINTIRIYNPIKQGMDHDPQGVFIRQW
CPELKDVSTIHIHEPWMLGGGRSAPIVDVTTSMQLAKDRIWEIRRSAGFD
RHADAIQRMHGSRKAGLKPTASRRRQKRSNDNGVRQLSLEL
>SYNW1680 putative 6-O-methylguanine DNA methyltransferase family protein
MGDRISFDSSVWDAVSRIPHGRLATYGQIADLIGAYGCARQVGWALRRLP
LPSNVPWHRVVNAQGRISMSLSREGSDWIQRELLLAEGVPVDEEGRLPLK
ERLWRPDAMSGS
>SYNW0346 Putative RNA methylase family UPF0020
MVTWSTTVLGRGNRLNGVAVLPQGLETLGCDELVALGAHGVQPLRRAAAF
QADMACLYRLHLQARLPFRLLREMAVFPCQGRADLYDGISNALNWEQWLH
PSMSFRVDVTGTAPGLNHSHYSALQVKNTLVDLQRELWGERSSIDLAHPD
LALHLHLNRGGAVLSLDGSGVSLHRRGYRAAMGAAPLKENLAAGLIQLTG
WDGRMPLVDPFCGSGILLIEAVTMALQQAPGLGRQFGLEGWADFDRELWE
REHARARQRRRSDLDLAPVVGYEQDPLIADQARDNIRAAGLDGLISIHSG
SFEQQTLPPGPGLLVCNPPYGHRVGSEDDLEQLYRLLGSFVREQASGWQL
WLLSGNASLTGALRLKASRRIPVSNGGIDCRWLNYGIR
>SYNW0112 hypothetical
MVRGFGRLMADRSLVPSVSDQTVFMGVISRSVPAMAQHLLGWWQINGRCD
SAQKPWMVNLAGRWPTVTDELDLYGIWIAEVMLQPPAVSAGSD
>SYNW0722 conserved hypothetical protein
MRLISGRRLLSPRGSGTRPTTSRVREAVMNIVRPRLLDCRWLDLCSGSGV
MACEAIERGARSVTAVEKDPRCASICERNLMEVAQSGSRRADVTVVKRDL
MIWLQQDWRQEGFDLIYFDPPYDGGLYSKTLSLLANQEWLRPDGLLICEH
PSDQPLDPGGQWTVMDRRRYGSSSLVMISRPERCRRDGTDSRQPRTDPEA
>SYNW0005 putative DNA topoisomerase chain A
MAEERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAM
QELGLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPL
LDGHGNFGSVDDDPPAAMRYTETRLAPIAHQALLEEIGDDTVDFAPNFDG
SQQEPTVLPAQLPFLLLNGCSGIAVGMATSIPPHNLGEVVDGLVALIRQP
ELSDSKLLELIPGPDFPTGGEVLLSSGLRDTYLVGRGSIPMRGIAHIEEV
QPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESD
REGMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVDGQPRQLSL
RQLLQTFLDYRELTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMI
QEARDAASARASLMVRLDLSERQADAVLAMPLRRLTGLEQESLRQELEEL
QAERERLRLLLDNRDQLLDAMVQELKGLKKRFSTPRRTRLVEGGDALMAE
RAASQRPNTELLRQQALEALPADARLLIQADGQVKVMSPPVLGRMHLSEP
CAVGDHPSPAQVILPIEPSPRLLGVSASGRVALVRWEFAGQQPGSLEKFL
PSGLDGDPLIAILELPVGDGTEFSLGLLSSDGRFKRLPLADVLDLSGRAT
SVVKLKEGLSLCSAVICREHSDLVLVSSMGRLLRLPVNDSVLPKMGRLAQ
GPMTMRLLPGEELVGSLSIDVAETDPTLLLVSRKGQMTRIDLTPLRRCQR
GDLGIMAVVLSADEDSVAGLCSGDSLAGIVTDQKRHGRLDASAVELTAPG
QSWGNQLDLNSKEQVFSVVALKTS
>SYNW1570 possible phage integrase family
MAKVIWSDNLRQVLKREHGKGWSVRDHRGRVQLTRIFEDRSRSAVYLPLT
WTADNATSILNTVAAIHDLMDSRKVSLKEAARLNTQALAEPAKSAKTVAD
KGWDAVAADFLKSRGDRRSSTLRDLKLRVERAVAVINQKPKPRDGMSVLE
AYAAAYFKEMAPGGQGRKRNLNDVVAFLQFAVDRCGAPDRFLPPPKDRIN
ELIGTSPTSTTERLTPPIKADQFTALLDALEADGRHDLKLAVALVGYLGL
RPAELAVLRVGDDEKARVGSIKRNIQTMQQADKPPRLVMPLEIDGRNNEG
ARAIAQFASGLVKLPKALRKQIDLVEEKGRFQDVGAEFAQQLSRCKHWQA
MFKADPRITPYSLRHGFAWRATVGQNKIPVRTTAALMGHTMQVHHRHYGA
WVDEAAIEEAVGMHNAVVA
>SYNW1569 possible phage integrase
MVVCQIRERMEKGEESLAKAFQLLQKQHGATPTVSKSVDDEDSGWQAVIY
DFIERRRQNSRSTTMKDLTRHMERVKQTLAKKPRPQSGADLMRSFARQHF
KNCPPGKSGRITQMNNVRGLLRHAIKEFGYDSRWKPLETDDLRELIGTDD
RPTEDKLTPPVMPNDLGNLLDALRDADRTSLMLLVGIIGIYGLRPLEVSQ
LIWEDGHLKVRPGGKRNKATRGKKQKNRLVLPFDVPGREGEGERLVMLWR
TGTIRFPQTVLNRINEAEEKGFKPVGDEIRQQLQRFRFWQGLEATRSGLT
PYSLGHGCAYRMHKSYDRPLSIRDAAALLGHTPQEHHASYGQWIDEAGLI
EAVERITGAGRTTLEGDTLSPLDLHPEAA
>SYNW0039 possible helicase
MGDLISDSGSLSCGLDLSAAGLIRVVCPFDAVTQAQLRRIRPRGSWMGPS
RGWEFPLAAAAALIQGFGTRFPVTPQLQQWLDWCHHPLPPLPPHRDLVAA
ADLTMALRDGRRPLPHQRSGARWLLARRGAVLADEMGLGKTLTALLAARA
MVRCAELRVMVVAPVGLHAHWRREAETVDLQPELVSWARLPAELPPAGTL
LVVDEAHFAQSLQANRTAALLRLARHPRLRAIWMLTGTPMKNGRPAQLYP
LLAAMDHPIARDQRQFEERYCQGHWREQRGQRRWQASGATQLEELRRLTR
PLILHRRKAQVLELPPKQRREHPIALSDAESLGFDHRIDLLVDDFRRRAL
KGEVRSDAEPLAVLTALRRVAAEFKLPAAETLVRTLLQAGEAVVLFSGFV
EPLQLLQQRLGGALLTGRQRPVERQQAVDCFQQGGEDLLLATFGTGALGF
TLHRARHVVLLERPWTPGDVAQAEDRCHRLGMEDEVLTCHWLQLGPADQL
VDGLVASKAERIEILLGPRRLTLERQSLPLMVRRCLQVA
>SYNW2059 conserved hypothetical protein
MLEAQAHSHLKTLLRQGESNWPHHLTLSRLVGRSLRRGDRTLLRLAPNQR
ERWWLGLLMPLCLQSSSAVLVLTAQQRQRLLQVERPRLARQGFRLACWEG
NTPPPQDQLWLLDHAGLIQAHRNDLLGDRQLLLPGIDQLSEQLRRCMAIR
LDASHWEQLRLALPQAEKPLLELHERLSRQLFREAPRVDACIRLDNSACQ
SLRDLLAVMGPCPSPWSELLACDPREWSHWAELDHTMLQWSWCLEPLEPL
QQLQGLLSQRPTLMLSDSGDSARLEQELQEANASPTVTAVLREAELEEPL
PLFAPRRQPLPNTEIYAEHLLEQSRRLILGRPGLTVLLLDDPSLRRSLTA
SLAAEFGTRVQDECTAPEDNGVISGSWSWWLQHLDQLPEPEQIIIGLLPI
ASLTSPITAARVERLKSQGADWFRSLLLPEALRQIPAAVAPLRRSGGRLA
VLDGRLRGRSWGDQVLQRLEPWRPLQRLLPD
>SYNW1958 putative ATP-dependent DNA helicase
MVVDSLETALHTHFGWSRFRAGQRPVVEAVLSGRDALAVLPTGGGKSLCY
QLPALIRGGLVVVISPLVALMEDQVLQLRRRGISAACLHAGLDPVRRQQA
MAALRDESLRLLYLAPERLQGEATQRLLETHAAEGRLVALAVDEAHCISA
WGHDFRPDYRRLGLIRRLCPGVPMLALSATAAPRVRADILRLLDLRSPLV
QVSSARRENLRYAMQRRPRDPMPQVLEALEQSRGATLIYARTRRSVEHWA
ERLQGQSVEATPYHAGLDPATRQTALTQFLEQERPVLVATVAFGMGVDRG
DVGLVLHLDLPSTPEGYLQESGRAGRDGQPARCLVLFSPGDRTSLGWAMQ
AAAGQGTTADERHRLDLAQQQLRRMEAVAEGEMCREQALLLAVGELVDPC
GRCDRCSASPKRKDWSRQATTLLTHLDDLDGTDMRRLGEHLALHETGQGE
RWTWLARRLVQEELIRESNDGVQRLQLRDSGRRYLERPWPLDFAA
>SYNW1961 FPG, Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase)
MPELPEVETVRRGLADRLSLFEIERVEVCRSRAIASSGGVAAFLVGLTGA
RVGTWSRRGKYLMAALEPNRGIWGVHLRMTGQFQWIEEPSTPCTHTRVRF
WNANGHELRFVDVRSFGEMWWVPPDVELTVGIPGLARLGPEPFSEAFSAP
YLKRQLKNSSRPIKTALLDQALVAGVGNIYADESLFSAGIPPLTPAGRLT
LAQLERLRSSLVEVLTTSIGAGGTTFSDFRDLEGVNGNYGGQAWVYRRGG
EPCRRCGTIIRRDKLSGRSTHWCPTCQG
>SYNW1536 dnaA, chromosomal replication initiator protein DnaA
MVLTGEELWSKVREGLQTKLSKPTFETFIRPTACSGFANGELRLLAPNPF
AGVRLREQLLPSITQLASEACGGPVQVVVLADSAVVSPGVTNQDADPPEP
ASAPGDSAAARESAPSRSPRRVLPGLNPRYVFGRFVVGPNSRMAHAAALA
VAEAPGREFNPLFICGGVGLGKTHLMQAIGHYRLEIDPSARVSYVSTETF
TNDLIDSIRKDGMKAFRDRYRAADLLLVDDIQFIEGKEYTQEEFFHTFNA
LHEAGKQVVIASDRPPSQISRLQQRLISRFQMGLIADIQAPDLETRMAIL
QKKAEQERMALPRDLIHYLAGRFTSNIRELEGALTRAVAFASITGLPMTV
ESVAPMLDPTGQGVDVTPQQVIDKVSEVFDVTAEEMLSSTRRRAVSQARQ
VGMYLMRQGTDLSLPRIGDTFGGKDHTTVMYAIEQVEKKLASDPQLAGQV
QKVKDLLQIDSRRKR
>SYNW2379 dnaB, replicative DNA helicase DnaB
MVSVPLSDSGENAEGGRRKFGHSRRDQEPSFEALPDSVPPQNLEAEEAVL
GGILLDPDAIGRVADVLQPEAFYLNAHREIFRTALMLHSQGKPTDLTAMS
AWLADTGSLEKVGGNSRLIELVERVPSTASIEQVARLVMDKFLRRQLIRS
GNEVIKLGFDQSLPMEQVLDQAEQTIFAISQEKPSKGLTPTAEILTQTFE
EIESRSLGTSVAGIPVNFYDLDAMTQGLQRSDLIIVAGRPAMGKTSIVLN
LAKNVAQLHDLPVCVFSLEMSKEQLTYRLLSMEVGIEAGRLRTGRLQQEE
WPLLGQGINTLGQLPIFIDDKPNSGVLEMRSLCRRLMAEQGKELGLVVID
YLQLMEGSSPDNRVQEISRITRALKGMARELNVPVIALSQLSRGVESRTN
KRPMLSDLRESGSIEQDADLVLMIYRDEYYNPETPDRGITEVIVTKHRNG
PVGTVKLLFEPQFTRFRNLAA
>SYNW1032 dnaE, DNA polymerase III, alpha subunit
MAFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIEL
LKLCKGSDLKPIIGNEMYVINGSIDDPQPKKEKRYHLVVLAKNAVGYRNL
VKLTSISHLRGMRGRGIFSRACIDKHLLKTYSEGLIISTACLGGELPQAI
LRGRPDVARNVARWYQEVFGEDFYLEIQDHGSPEDRIVNVELVRIAQELG
IQLVATNDAHYLSKQDVEAHDALLCVLTGKLISDEKRLRYTGTEYIKTEE
EMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFPIPEGHT
AVTYLREVTEQGLRERLELSSDASIPENYAERMAHELKIMEQMGFPTYFL
VVWDYIRFAREQKIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFL
NPERKSMPDIDTDFCIERRSEVIDYVTERYGDDKVAQIITFNRMTSKAVL
KDVARVLDIPYGDADRLAKLIPVVRGKPAKLKAMIGEESPTPEFREKYES
DPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLDELVPLQRNNDGQVI
TQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTRLDPDKLPPE
DADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGP
LDAGLIPKFINRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDL
AGYSLGQADLLRRAMGKKKVAEMQKHRGIFVKGAAERGVDEAVSDELFDQ
MVLFAEYCFNKSHSTAYGAVTYQTAYLKAHYPVAYMAALLTVNAGAADKV
QRYIANCNAMGIEVMPPDVNASRTDFTPNGDRILFGLSAVRNLGDGAIRQ
LIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHCGALDSMDPAANRA
QLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAPKAA
PVADYGPAEKLKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPD
KAKVSAVTMITELRQVTTRKGDGMAILQLEDLSGSCEAVVFPKSYARLAD
HLMTEARLLVWAGVDRRDDRVQLIIDDCRAIDDLAVLLVELSSQQASDIA
IQHKLRECLTQYRPEREELGVKVPVIAAVRDGHSVRYVRLGSQFCVKDAE
AALQALKTQAFTARHSEPMVLG
>SYNW1038 dnaG, putative DNA primase
MANARLHPRTIDAVKERADIVDVVGDHVVLKKKGREFVGICPFHDDSKPS
MTVSPAKQFYYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQVPVET
VDGPQQERLKQQLSRREKLQRALALAAGWFRSQLRSTTGEQALAYLTEAR
GLTLATQETFGLGYAPDQWDSLLNHLQQVEGLSAELLEAAGLVVPRKGGN
GFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEPKYLNSPETEVFEKGKH
LFGLDKATNTIRKQDRAVVVEGYFDVIALHAAGITNAVASLGTALSSQQI
TQLCRVTDGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLHLP
SGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQALADRDLAKADQFQQA
VSALVALLGKLPQSAVRTHYLQRVAERLSGGQGRLALQLEDDLRQQVKGQ
RWHGRSSRHDQPGDTSQRERCEADLLRLYLHAPRYRGTIRQELRQRELED
FAIPHHRLLWASLTELEETNLGVGRLESISHGEDDGDGLDGLDLPRLLTD
QLLLENSPLLSRLTPLLEPGELERVALAEPLEQLRGLAALLERQKSFKRC
RHLLEAWGGQRLQTLEACISVLVQDNQEDQQGVDMEGRIEQLFEELNRDA
LHYQELYYSERKHIQHLDQQRRGGFQTIDALSA
>SYNW0001 dnaN, DNA polymerase III beta subunit
MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTDRLSLTGFD
LNLGIQTSLAASVETSGAITLPARLLGEIVSRLASDSPLTLTTEESGEQV
QLNSLSGSYQMRGMPADDYPDLPMVESGLTLKLQASGLVQALKGTLFASS
GDEAKQLLTGVHLSFTDTNLEAAATDGHRLAVLQVNDALQAAAEGTEGEG
AAFAVTLPARSLREVERLVAGWRSEDPISLFCDRGQVVFLAADQMVTSRT
LEGTYPNYRQLIPDGFSRTLTMDRRALVGALERIAVLADQHNNVVKFSSQ
PESGVVLISADAQDVGSGSESLAAELSGDAIQIAFNVRYMLDGLKAMAGD
RVVLHCNAPTTPAVLRPVEDGDGFIYLVMPVQIRS
>SYNW1016 dnaQ, possible DNA polymerase III, epsilon subunit
MADQLTLLEAVPEHRSEPTASAGPATLLIIDTETTGLDPEKDRCLEVGAI
LFDVSTRSVLAQQSFLLPVETNAAEPINRIPASVTRLPQPWTGALRWFDE
LLTASDVLVAHNAVFDRQWFGRDPLPAVSHPWLCSMEDLRWPAERQLRSR
PSVRDLALAYGVPVWSAHRALTDCNYLAEVFARCDDLETMLLHGLEPRQL
MRARVSYDNRHLAREAGFRWNDPVKGAWTRRLSQREVKSLDFPVEVVEPG
PERRAA
>SYNW0061 dnaX, DNA polymerase, gamma and tau subunits
MSTAYQPLHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRG
TGKTSSARILARSLNCLNSDGPTPEPCGTCELCTTIAAGTALDVIEIDAA
SNTGVDNIRELIERSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEP
PPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLDALEAHLSWIAEQEAI
EIQPEAIHVVALRSQGGLRDAESLLDQLSLLPPPIEATAVWDLLGAVPEQ
ELLQLVQAMSSAEPVALLEATRNLLDRGRDPGAVLQGLAGILRDLVLMAA
APDRPELTGVSPQFRDQLPPLAKALGRARLLQWQAQLRGSEQQLRQSVQP
RLWLEVLLLGLLAEAPAAAPATSAPVTAAVPSQTAPAITPTPAVPAPSPT
PSAAPATAPELPKVAPAAAEGAAPNLAELWQQILGSLELPSTRMLLSQQG
QLVRLDANRAVVQVASNWMGMVQSRAALLEQAMAKALGGSRQLVLEASSG
GAAPKVQPPPAAVVTPPVINTPSPTPEPTPPAQTRAAPAATPQLPEPVSQ
APKPPEPKRPPANTSEPSGLDRQAKNLADFFNGQVLDMDNPEV
>SYNW0727 gyrA, DNA gyrase A subunit
MADSVGPGGGGPGDSDDRIIQADLRNEMSRSYLEYAMSVIVGRALPDARD
GLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDAL
VRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLLEDI
EAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHNLN
ELINGLLALIENPDLTDQELVRLIPGPDFPTGGQILGREGIRETYLGGRG
SITMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKK
LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTALQSNFSAYML
ALVNGEPILLTLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLL
ALDQLDPIIALIRAAPDTATARQQLQDRHGLSDIQADAILQMQLRRLTAL
EADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSDRYTTPRRT
EILDLGGGLEDIDLIANERSVVLVTETGYLKRMPVSEFEATSRGTRGKAG
TRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPV
VQLLPIPREEAITSLIPVSEFNDDMDLLMLTRGGFIKRTRLSAFSNIRSN
GLIAINLEEGDALRWVRLAVPGDSVLIGSNAGMTIHFRLSDEELRPLGRT
ARGVRSMNLREGDGLVSMDVLPVELADRIAQSAEDDEEDDASSGDGPWVL
VASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDDALVGLRVLGAGEEV
LLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVLVPPEAED
DTTATDDTNADDTETSDTESSAQDS
>SYNW0095 gyrB, DNA gyrase subunit B
MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVD
NSVDEALAGHCDRILVTLGEDGSASISDNGRGIPTDVHPRTGKSALETVL
TVLHAGGKFGAGGYKVSGGLHGVGVSVVNALSEWVQVTVRRQGQVHRQRF
ERGAAIGSLASEDQPASEAGETGTTVCFKPDIEIFTGGIVFDYATLSARL
RELAYLNGGVRIVFRDERESARNEVGEAHEETYFYEGGIKEYVAYMNTEK
DALHPDIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTHI
EGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEF
EGQTKTKLGNTEVRGIVDNLVGEGLSQFLEFNPSVIGLILEKAIQAFNAA
EAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEGDSAGGSA
KQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGED
FDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKALVEGGYIYIACP
PLYKVERGKNHTYCYNEGDLQKTLQSFGEKANYTIQRFKGLGEMMPKQLW
ETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAELDM
TALDI
>SYNW2237 holB, DNA polymerase III, delta prime subunit
MTNLFEDLIGQPLAVDLLKAALNRQRLAPAYLFAGPDGVGRRLAAVRFLE
GVLGAGQQAERQRRRLEERNHPDLLWVEPTFQHQGRLLTREEAEEAGITR
RTPPQLRLEQVRSISRFLARQPVEAERGMVVIEAVEAMPEAAANALLKTL
EEPGHGLLILLSAAPERLLSTIRSRCQLIRFLRLAQADLNRVLEGCGAVA
EHDPPELLAMAAGSPGALLEHRRQRAGLPEELTGRLASMRDQPMEALALA
RDVCEALDGEQQLWLINWWQQQLWARGAGDRPLQRLETLRRQLLSFVQPR
LAWEVALLELTTGK
>SYNW1931 mutS, putative DNA mismatch repair protein MutS family
MNPPVAFLPTAADPTKGIDQAFQETLELLEWPRVCDHLASFASTRMGRDA
ARNLVLPETLEASRQRLAETVEMAVLDDLTEGGLSFRGVQDLTPVLLRCS
KGGVATGEELLAVAETLAAARRLRRQIDEPELRPACSALIDTMVTLPELE
QRLKFSIEEGGRIADRASAPLAWLRQQWHGLRQERRDKLQDLLRRLAPFL
QDSVIAQRHGRPVLAVKAGAVAQVPGQVHDSSASGSTVFVEPRSVLTIGN
RLTDLEGRIRDEERKVLIELSAVVADDHPVLLQLVSILLQLDLALARGRY
GRFLGGTAPRMEASAAAPFRFETLRHPLLVWQHKRAGGPAVVPISMEVSV
DLRVVAITGPNTGGKTVTLKSIGLASLMARAGLLLPCAGMPTLPWCAQVL
ADIGDEQSLQQSLSTFSGHIKRIGRILEALQSGPSPALVLLDEVGAGTDP
SEGTALATSLLKALADRARLTIATTHFGELKALKYNDARFENASVAFNAE
TLSPTYELLWGIPGRSNALAIASRLGLDDQVLEEASQLLAPAADGEVNSV
IRGLEEQRQRQQAAAEDAAALLARTELLHDELLQRWQKQKQQSAERQEQG
RQRLERSIRDGQKEVRSLIRRLRDDRADGETARRAGQRLRRLEDRHRPEP
ERRQPLPGWRPEPGERIRLLALGKAAEVLAISDDGMQLTVRCGVMRSTVE
LSGVESLDGRKPEPPAKPVVKVNARINPGSGAQVRTSRNTLDVRGMRVHE
AEAAVEEHLRGANGPVWVIHGIGTGKLKRGLRAWLETVPYVERVTDAEQG
DGGGGCSVVWVR
>SYNW0078 mutS,fdv, putative DNA mismatch repair protein
MPGPSDDPTEIALQGNLFSDAEPTVSATGVEPSTACEAFSDMELTADAAS
RPRRRAPADHNAADHDSNTDESSDNSDDPAWAHHSQVDPQQLTPMLRHYV
ELKAAHPERVLLYRLGDFFECFFEDAITLSRLLELTLTGKEGGKAVGRVP
MAGIPHHAAERYCGELIRRGFSVALCDQLETTPAKGALLKRDITRVLTPG
TVLEEGMLSSRRNNWLAAVVIEPAHRDEPFRWGLASADVSTGEVQVMQRQ
DSDALHQQLAQLGAAELLSSTPESNPAWCPDQLRLTSVASTPFSRPAAEA
ALLRHYKLANLDGLGLPELPLALRAMGGLLAYLRDTQPLEENASVPLEVP
AIVQRGDALVLDAQTRRNLELTATQRDGSLQGSLLWAIDRTLTAMGGRCL
RRWLEAPLMDLDAIRQRQQLVSTLVEQRNLRQALRRLLRPMGDLERLAGR
AGAGHAGARDLVAIADGLERLPQLAARLEGTIIRGPDWLDDLLQPDPALQ
DLASSIRHTLLESPPLSLSEGGLIHDGVDPLLDGLRNQLDDQDAWLSQQE
KQERQRSGNSNLRLQYHRTFGYFLAVSKAKASAVPDHWIRRQTLANEERF
ITPALKEREGRIFQLRARACQREYELFCTLREQVGALAASIRRAARAVAG
LDALTGLADTAASGAYCAPELVEGRALSLSEARHPVVEQLLVETRFTAND
VHLGSGTDLVVLTGPNASGKSCYLRQIGLIQLLAQIGSWVPAAKARIGIA
DRIFTRVGAVDDLAAGQSTFMVEMAETANILHHATELSLVLLDEIGRGTA
TFDGLSIAWAVSEHLAGDLRARTVFATHYHELNNLANERANVANFQVLVE
ETGDDLLFLHRVSQGGASRSYGIEAARLAGVPTPVVQRARQVLDQIEAAA
>SYNW1334 mutT, NUDIX family protein
MTISVALAMLHRDGRWLLQLRDDIDSIIYPGHWGLFGGHVEPGESPADAV
QRELEEEISWVPSAPLQLWFSDASGTRIAHVFRGPLTVPLEQLKLREGQD
LKLASLEELCSETIWSDHCQEQRPIAPGLSIVMRRLLAEMDDA
>SYNW0702 polA, DNA polymerase I
MPEASTKPLLLLVDGHSLAFRSFYAFSKGGEGGLATNDGRPTSVTYGFLK
SLLDTGKSLKPEGVAIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLDQ
LQEILRHKLDLPLCMAPGYEADDVLGTLANRAADDGWGVRILSGDRDLFQ
LVDDNRDIAVLYMGGGPYAKNSGPTLIREEGVLGKLGVMPNKVVDLKALT
GDSSDNIPGVRGVGPKTAISLLKDNNDLDAVYATLEELEAEGPKASRGAI
KGALKGKLRNDKDNAYLSRKLAEILVDIPLPQEPSLPLSTVNAEGLSSCL
EDLELNSLLRQVGGFVAAFSEGGYGANADAAAPAQPSSRPKVTKDDRGLE
ETVGSVPALRPQLIQDTAALQGLVQRLMTCTDTGSPVALDTETTDLNPFK
AELVGIGVCWGEELDALAYIPLGHNGSADSQPVQLPLETVVTALAPWLGS
EDHPKALQNAKFDRLILMRHGLALDGVVIDTLLADYLRDAAAKHGLELMA
EREFGFQPTAYSDLVGKKQTFADVPLEAASQYCAMDVHVTRRLALLLRNQ
LAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMGTTLE
RLETEAKEAAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATV
LEKLGDDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAV
TATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQAGWTLLSADYSQIELRI
LTHLSGEEVLQEAYRSGDDVHALTARLLLDKDEVSADERRLGKTINFGVI
YGMGAQRFARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSRGYV
ETILGRRRPFHFDRNGLGRLLGKEPLEIDLDVARRGGMEAQQLRAAANAP
IQGSSADIIKVAMVQLQAALTSQGLPARLLLQVHDELVLEVEPDALETTR
DMVVRTMENAVKLTVPLVAETGVGANWMEAK
>SYNW1782 priA, primosomal protein N' (replication factor Y)
MKFSGLCNPSEKPPDLVEVWLEAGREGRTFTYSADAALGLQAGDLVQVRL
RGRPLHGLVVARYNVSLGATVPDKVQAVEGLVQQAAVDPQWRLWLEGVAE
RCHLSVFRMLKAALPAGWLGQARTLSEGRALLWVERLQPPVPAPPLTSRQ
QQLLNALDVAGSGLWQRSLEASGFSPSMVRVLETKGWVRRDRRPLSTGVM
SVAPLEAARPLTSEQQQVMQRFEAVPDGEGMLLWGITGSGKTEVYLQLAE
KELAAGRHVLILTPEIGLIPQLVDRCRRRFGSRVLEYHSGCRDRERLQVW
RRCLAPEQPLLVVGTRSAVFIPLSPLGLVVLDEEHDSSYKQAAPMPCYHA
RDLAWDRIRAGGGRLVLGSATPSLDSWVQLHPDGPLRLGRLTQRISQQSL
PPVHVVDMRHELAEGHRRLISRPLMDRLAELPEKGEQAVILVPRRGYSPF
LGCRSCGEVVMCPNCDVALTVHRGSGGRQWLRCHWCDHRDEIGNRCAHCG
STAFKPFGAGTQKVMELLNEELDGLRLLRFDRDSTGGRDGHRRLLDRFAS
GKADVLIGTQMLAKGMDLPQVTLAAVLAADGLLHRPDLRASEQALQLLMQ
LAGRAGRGERPGQVLVQTYCPDHPVIRHLVDGRYEAFLAQEVQLRREAAL
VPFSRACLLRLSGESASATATAASVLAERVRPLCRDRGWWLLGPAPAPVA
RVAGRSRWQLLLHGPVGSPLPLPPGPTLWDELPRGVALAVDPDPLEL
>SYNW2191 psbU, photosystem II extrinsic protein (psbU)
MKRLLSWLTGALLMAGLLAGLILPGSVHADEDLVGKYSGNEIRNIADDKI
AAREGKVDLNNSSVRRFQQFPGMYPTMAGKIVLGGPYNDVDEVLNLDLSE
RQIELFNKYKENFTVTPPEIALNEGDDRINDGQYR
>SYNW2062 recA, RecA bacterial DNA recombination protein
MPAEMKSAASGSDPRSSGERDKALNLVLGQIERNFGKGSIMRLGDASRMR
VETISTGALTLDLALGGGYPKGRVVEIYGPESSGKTTLTLHAIAEVQKRG
GVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAA
VDIVVIDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGC
TVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEE
FGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRK
GAWYSYEGDNIGQGRDNTITWMEENPEAAITIEQLVRQKLTEGSEVKANS
MKPLAAAARTAAAAAPKATADEAAA
>SYNW0917 recB, probable exodeoxyribonuclease V, beta subunit RecB
MRFDPNRYPLDPGLRLLEASAGTGKTFALAHLTLRLISEAAMPLPSLLVV
TFTDAAAAELRSRIGQRLQDALAGLEAVARGDALPKADSVLQQWWQQAPQ
GQSRRDWISRVLMALEQLDAADITTIHGFCSRSLRRQAINSGAAMQQQLE
TDATALVQEVVQELWQQQLLTLPLPQLQGLVRAGLTADGLAAALLRLDAD
PQAWLQTDGDDFDPNQPLGAQLEVSLQLSWERFVQFWTRDGEGLEQCFRA
TAKQWKAMGFKPSPYSPKPTSDRFGQVDRWVAAQHDTPDLSTIRAQQKPL
HDYFHPGVWCRTARKCGEQEPSLAAPELQQAIADLWDGPIERVWRYALQR
GLQQLQRRRQRSGTVSFAGLLTAMDPGDAEASWLEPLQQRYRAVMVDEFQ
DTDPVQWRLLQRSFGGGSHLLLLVGDPKQAIYRFRGGDLDTYRRARGLVS
RIDTLEDNYRTTPPLMAGLNALMAPGLPESRLEVPAVHARTARSAAVLPE
GQQPLQLLQFEQDLPAGKTAIEAAVPPAVAEVVMQLLIEQPALSPDQLCI
LVSRHDQAADLRRALAERGVPTRLVAQGDVLDSDAALMMQHLLDALAAPA
DDRRLRLLAASPLVGWSADQLRCEAQDPQLDALAQRLRQAADQLPRLGLL
GCLSGLLDAERTAGLSDEGRMLGDLQQAARLVQEEMHRQGLDLAAAALWL
RRQRLHPPSPLPPAREPHSDLAESAVAVVTVHRSKGLEFPLVICPYLWAG
AKEARYVTGPLWRDGAAGGWRIALNRDWGLGWTVWQRSHAEQVAEAERLA
YVAVTRARSQLLLLWARCAPQQSVLQHWLFEGDADTLRDLPLSHRPLKPE
VGQQRWRPPHRQETLAIGATPQRIDRSWGRSSYSAWIAAPAAEALLEQGR
DQDPEAEEVTAAGLEEWPDRGPLADFPRGAAAGDCLHRMLEQLPFQCSGD
WGHVIEQELQRSGLSLDWREAVEQGLQQVLDTPLGGPLAALPLSALTPDR
RLHELSFDLPVRHARTDDLVEAFRLDPEARFGRDYIDQLSSLQVNSRGFL
TGSIDLVFSDAADPLQARWWVADWKSNWIGERGEPGSPSCCGPRHYDQVA
MEEQMRHHHYPLQAHLYLVALHRHLQWRLPGYVPERHLGGYVYVFLRGMP
GQSIGSSGETGPGRIVEPAPLQRVLALDRMLQQVAV
>SYNW0914 recC, probable exodeoxyribonuclease V, gamma subunit RecC
MLTLYRSNRAEFLATLLARQLLEERPDPFETVEVLVNTWPTSRWLGEQLA
TANGISSLVRFPFPGSRLRQLVRRVLDLPDQEQDPWRATSLVWAVLEQMP
ALLEQPVARPLQLWLQQRDGGDASGLSRDRWQLARAIADAFDDYALYRPE
TLHSWIQSQGSRAASAETDWQPWLARQLAASLHRQPFGLQVQSAVERLRS
GAVDPQVLPKVIRLFGISALAPVQVELIQALSGSTDVQVYLLTPCRDLWQ
RCGNRREQLGATWTEPPDGGWLQQAPRLEAMLGRMGAEFQQLLEGSGDSQ
LGEVREGDLFADPVRIAEGEGRSATLLEQLQQQLVEPGCRESLDRDLDDR
SLLFQAAPGPWREVQLVRDQVLQWLAADPELEPRDVLVMTPQIDRYAPLL
SSVLNDRDAIGVDLPWRLTDRSQQSTPGLTMVMLELLDLASGRLTATGLE
RLLANPALQTQQGLSGTEASALTRCLQRTGFRWGLDARERGGDETHSLSW
CLDRWLLGLALPQRDGLAPGGAAPFHQDLDPQRLVRWWSVLDRLVRWLQQ
LRRPRTSTAWVELLQAVLEDLFADGGAWSWERQGWSAALAEWQQRAASCS
LELEVAVAAEVLAEALSVDSGRFGHRSGALTVSALEPMRAIPHKVIVLMG
LDDGVFPRVDQRPGFHLLEQRRWLGDPRGGDQDRYVLLEALMSARRHLLI
SWCGRNEHTGEPRPAAAPVEQWLQDLTRQLGTEASAGLCIEPDPNPLDRS
NFQVAGHGQPLSCDRRQLAARRWLDQHQSHAATAGLAWPLHWSAPDPEVT
IDPRSDEELLQWLVDPQSAWLRQLGLHPAERVDPVEDLEALTLSSLLQAQ
VLNQDLEDHLLAAETPAWCETLAGQGVFPPAAGAQLEEGILSHRLQALQL
QLDRLGRCSRQGTLLMAGDIQVVVQPGRFTPRGLMRGWLQHLRLCADDAV
FGGSAVIARADKGDDAKPHVRWGRLEPAVAQAQLLTLQRLAQQGQHQCWP
VPPRSGWLLMSRDHYKAGSGVAAFQDGWIRERQDPQQRLCFGADAEADQL
LQSQGFEQACALLYKPMLQALVH
>SYNW0918 recD, probable exodeoxyribonuclease V, alpha subunit RecD
MSSSWSPAFATAVHAALVRRCPPAEGGAALAELSQALVDALERGELDLPL
TPDRAAVVQASGWLEGDDSPLLQRGERIGWRRWLEAMEGVVEQLLERQPP
SLPTPQEAPELPSTLNPEQQAAVLAMDGAAVVLLSGGPGTGKTSTVVELL
RRASQRHPTLRIGLAAPTGKAARRLGDAVRPGLNELPCFTLHRWLEAAGD
GFRRHRQRPLELDLLVVDEMSMVDLELMSALLEALPDACRLLLVGDPAQL
PPVGSGAVWQRLQDPAVRERFGSAAVHLLHTYRNRGALAALATTLRQQGI
EAFRRDLEQLPATANVQHQRASLRRLPPSVRDGWRDRHQRLSALATGLVE
MPESELNDAAGQLLLELENDLVLCPRRRGPWSLEDVHRSLLGGGGWMEPL
HWPEGVPVICGSNQPEVGLANGDLGVKLGSGEQSRVLFRVMAADGQPQIR
RLHPARLTSLEPALALTIHRAQGSEADRVTVLWPPLQEDNIAYDSCLLYT
AITRARGSLDLITAVDR
>SYNW2049 recF, putative DNA repair and genetic recombination protein RecF
MQGFRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQD
RDLIQWEAPRALLRAGLDDGDQLELELRRQGGRQARRNGKTLDRQLDLIG
PLRCIGFSALDLELVRGEPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQ
RSQLWRRGAQTNPNQRDALLDAFDVQMALVSTRIHRRRQRALRRLEPIAR
RWQSHLSAGSEELELHYQPGSRLDAEEAEEPWRLAIEEQLRLQRPEEERL
GSCRVGPHRDEVSLQLGGTPARRFGSSGQQRSLVLGLKLAELELVTQLFG
EAPLLLLDDVLAELDPTRQHLLLEAVGQEHQCLVSATHLSGFEGGWREHS
QILKPGDLSPGVEIG
>SYNW1093 recG, ATP-dependent DNA helicase
MADSSRSQESRGLNREQLTELLGWLKPLQQALSLEVETGFNNLQGRQQRF
DGFLVHQLAAPPPLPYPPGVEARLQRLHQGFVGYEELPESGRRRLVTDTR
QWLHELRLRLEPSAPMAPPRLRLATATASAPRRELGLDSPLTQLQGVGPK
LAGRLAAIGLLLVRDLLKHYPRDHVDYATRRRIEALVVGETATIVATIRR
CNGFVSPRNPNLSILELQLQDPTGRIKVTRFLAGKRFSSPAYLKGQQRLY
PQGATVAVSGLIKEGPYGATFQDPLIEVLESSNAEVRSRNIGRLMPVYGL
TEGVAADRFRQLIDQVLPLARAWPDPLNQTERRDWSLVSLPEAFQGLHAP
DDPSQLDQARRRLVFDEFLLLQLGLLRRRRTLSQRPCPQLELIRRGDGLV
GKFLASLPFAFTAAQERVFGEIEADLQRSQPMARLVQGDVGSGKTVVAIA
ALLSTISSGWQGALMAPTEVLAEQHHRNLCRWLPPLHVTVELLTGATPKT
KRRQLLDDLANGSLKVLVGTHALLEDPVVFSRLGLVVVDEQHRFGVHQRD
RLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTAM
LTAAQRSQAYELIREEVARGQRAYVVLPLVEESEKLELRSAVEVHAELAS
EVFPELTLGLLHGRLNSADKQSVLRDFADGRSQVLVSTTVVEVGVDVPEA
SVMVIDHAERFGLAQLHQLRGRVGRGAAASHCLLINGSSNPLARQRLDVL
VCSNDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALASLADDGAVLEDARA
AAQQLMEQDPDLSAHQVLLALLEEQQRRLSGAAPLN
>SYNW2523 recN, putative DNA repair protein
MLTGLQLQNIALIDRLELEFGSGFTVLTGETGAGKSLLLDALDAVLGGAQ
GSAGQRLLREGSERSRIEASFQLTPILRAWLSDGDFESEDELLVSREWKR
LDGERWSSRSRLNGTPVNRQQLLSLRPLLIDLTVQGQTQLLSKPGQQRQW
LDRLGGSSLAALRADVAAAWQGWCESATALEAVEREQQRCEEERAEQEAL
LEQLEAAGLEDPGEQEQLEQDQDRLVHGVRLQEGLAQLFRRFRDGADQAP
SLQDHLAASVQELQVMAQLDGSLTGVKDQALDLEANVEELLRSLDHYSLA
LESDPEHLDRIQERLAELKRLQRRHGLDLAGLIDRRDGLRQRLGDRGFEA
DLQRLRMVEQSQRQQRDQANAALRQARSQAAIDLQASLLKLLPPMGLANV
RFEVDLRYAEPADHGADAVSFLFSANPGQPLAPLVEVASGGEMSRFLLAL
KTTLAAVDGSSTLLFDEIDAGVSGRVSGAMADLLRSLGEQRQVFCVTHQP
LVAAAADHHLRINKEVKEGVTYSRVSRLRDTRERQQELAELAGGDQADLY
AASLLAQRSA
>SYNW0928 recR, RecR protein
MARLIDQFERLPGIGPRTAQRLALHLLNQPEEQIRQFADALLAARTQVGQ
CQTCFHLSADPECEICRNPERRNGLICVVADSRDLLALERTREFQGRYHV
LGGLISPMDGIGPELLHVTPLVARINQEDITEVILALTPSVEGDTTSLYL
ARLLKPFCPVSRIAYGLPMGSELEYADEVTLSRALEGRRPLD
>SYNW2338 rnhA, possible ribonuclease HI
MAEERGRVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGHDPATTNN
RMELQAALELLQRLKQLPRHPDLTIRTDSKYLIDGLGSWMKGWKRKGWKT
AAGKPVLNQDLWKALDAARLDDVPLAYVKGHSGDPDNDRVDRIAVAFSQG
RSLDLGQPAVESDVAAVDVDADPAPQPLVQLLNRLELADRLADGGFSLSL
VELAQLVELPLKQLEQRRESWSWRDWRVHPDKEGRWTLQRREAGSEQS
>SYNW2144 rnhB, ribonuclease HII
MRCRHCLSPRRLSLLMGLKPPLKTRNPRNPAVAGVGLRPQPLLIDSIPCH
RGVAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRG
DLVPLIEHEAEAWGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELV
LVDGNLPLRPWTGEQRSIVAGDQHSLAIAAASVIAKQCRDALMQRLSQRF
PGYGLERHAGYGTALHRAALLDLGPSALHRRSFLRRFLG
>SYNW1035 ruvA, putative holliday junction DNA helicase RuvA
MIGWLKGDVQHRDQKGSRNLVLIACGGVGYDVQLIERDWQAVSTDQRHEF
WIHQVVSADNLQLFGFLQLAERDLFRELIQVSGVGPQAGLALLNACAYKE
LVTALVHSDLKTLCRAKGVGKRTAERLALELRTRLTDSVASTGPERNQLD
PVAPDLIATLETLGFETHEIRDALQRLNGMGGPQDGDDDDAWLRACIKLM
SSTDP
>SYNW0135 ruvB, Holliday junction DNA helicase RuvB
MAIVSSNAGSSAPRREPVLDAQPLPEESSGRPDDGLRPKRLDDYIGQDEL
KQVLGIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEELGVTCRITS
APALERPRDIVGLLVNVQPRDLLFIDEIHRLNRVSEELLYPAMEDRRLDL
TVGKGSTARTRSLELPPFTLVGATTKAGSLSSPLRDRFGLIQRLEFYGQE
DLEAIVSRTADLLGVSLSAGACRRIAGCCRGTPRIANRLLRRVRDVACVQ
GRQNQIDEGLVSQALSLHRVDHRGLDAGDRRLLAQLDQHHDGGPVGLETL
AAALGEDPTTLESVVEPFLLQQGLLVRTPRGRMLTEAARAHLREQEVA
>SYNW0715 ruvC, Holliday junction resolvase RuvC
MRILGIDPGLARVGYGVIDTSGGHQRMLDCGIIRTDPGRSDGERMVEIAS
DLRQLIRAWRPELAAVEKFFFYRSSNTINVVQARGVVMMTLARFKVPVVE
FPPMQIKLALAGFGHAEKDEVLEAVMRELDLTEPPRPDDAADALAVALTG
WFQR
>SYNW1977 smf, putative DNA processing protein (Smf family)
MRGWWWAWSGCPGIGSSRMAALQVAAVEHGVGLDDCWAWSRERLAQVLSW
PDPLLDKVERYRRLHGSSPQLKIPSNVLTPLDQIWPQGLNKLDRPPLVLH
QQGRADVLAWLGQRRAVAVVGTRAASDHGLRMAEHLGSVLAGAGWPVVSG
LAEGIDAAAHRGCLAADGVPVAVLGTPLDRVYPRHHQALQEEVARNGLLL
SERQPGESVQRGHFAARNRLLVSLSCALVVVECPDRSGALISARLAAEQQ
CPVWVVPGDAGRWSSRGSNRLLQNAAAPLLSPKELVEHLGPGPFHRANAT
APALVKALGAGASIEQLQQTLKLPAGRLASDLLELELAGQVVCESGFLWK
PCRP
>SYNW0121 ssb, single-stranded DNA-binding protein
MGVNSVTLVGRAGRDPEVRYFESGSMVANLTMAVNRRSRDDEPDWFNLEI
WGKQAQVAADYVKKGSLLGIIGSVKLDRWTDRNSGEERSKPVVRVDRLEL
LGSKRDNQEAAGSFGGQASDEEIPF
>SYNW1872 topA, Prokaryotic DNA topoisomerase
MAHTLVIVESPTKARTIRGFLPKGFKVEASMGHVRDLPNNASEIPASAKG
QKWANLGVNTEADFDPLYVVPKDKKKVVRELKDALKGADQLLLATDEDRE
GESISWHLLQLLAPKVPVKRMVFHEITKEAIGKALDQTRDLDMELVHAQE
TRRILDRLVGYSLSPLLWKKVAWGLSAGRVQSVAVRLLVQRERARRAFCS
GSYWDLKAQLEHSGSGFEAKLTHLVGRRIATGNDFDESTGGLKAGSEVRL
LTEKEARALAETVQAATWSVDAVEEKPTVRKPVPPFTTSTLQQEANRKLR
LSARETMRCAQGLYERGFITYMRTDSVHLSDQAISASRSCVESLYGKEYL
SKGPRQFSNKARNAQEAHEAIRPSGESFRTPGDTGLEGRDLAVYDLIWKR
TVASQMAEARLTMLSIDLSSGEASFRASGKRIDFPGFFRAYVEGSDDPDA
ALEGQELLLPALAVGDAPAPKQVEPLGHQTQPPARFSEASLVKMLEKEGI
GRPSTYASIIGTIVDRGYSTLQGNALTPSFTAFAVTALLEEHFPDLVDTS
FTARMENTLDEISHGKVEWLPYLEGFFKGDQGLETQVQQREGDIDPGASR
TVDLEGLSCVVRIGRFGAYLESKRVGDDGEEELIKATLPREITPADLDAD
QAELILKQKADGPESIGEDPETGDLVYLLFGQYGPYVQRGQVSDENPKPK
RASLPKGQKPEDLTLDDALGLLRLPRLLGEHPDGGRVQAGLGRFGPYVVW
DKGKSEKDYRSLKGDDDVLAVGLSRALELLAMPKRGRGGRTALKDLGKPE
GSEETIQVYDGPYGLYVKQGKVNASLPEGKGADDVTLEEAVELLAAKASA
KKSSRKTTAAKKAPAKKAAAKKTAAKKPPATTKSGRLRASAVRVIKPADS
>SYNW1043 umuC, putative UmuC protein
MGLATALIDGNNFYASCEQSLDPSLIGKPVVVLSNNDGCIVARSAEARAL
GIAMGTPYFKARQELERQNVVVRSSNYALYADMSQRMMSLLEIHCEELEI
YSIDEAFGRVRRPKDGDLQSWGRSLRARVRQDLGLPIAIGLGASKSQAKL
ANRLAKQVPAHAGIFDLGHCTDPDAWLETIAIEDVWGIGRKLARWCRLRG
VNNARLLRDMPSGELRAKCGVVGLRLQRELRGHACLPLALAPSPKQETCV
SRSFSRPITTLEELRQAVATYVVRAAEKLRKQHQRAAALTVYTRTSPFIP
AFYSQAASTRLDLPSNDTTVLLEAALPLVDRIFRPHRQLAKAGVLMQHLQ
GTELLQSHLLVPLSEAQQQRREELMRTIDRLNRRYGRGTVQWAACGLHPS
WMMRRERLGRTATTRLSDVPVVHADR
>SYNW2522 uvrA, excinuclease ABC subunit A
MVRAAAKSTDRTAPVNLSGGSLEDVIRVRGARQHNLKNVDVTIPRNKLVV
FTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQVDKPDVDAIEG
LSPAISIDQKSTSHNPRSTVGTVTEIQDYLRLLFGRAGEPHCPQCDRSIR
PQSIDEMVDQILVLPEGTRYQLLAPVVRGKKGTHTKMISGLAAEGFARVR
IDGEVRELADNIELDKNHSHNIEVVVDRLVARDGIQERLTDSLRTVLKRG
DGLALVEVVPKKGEELPDGVERERLYSEKFACPVHGAVMDELSPRLFSFN
SPYGACEACHGIGHLRKFTVDRVIPDPTQPVYSAVAPWAEKDNSYYFSLL
YSVGEAFGFEIKTPWNQLTDEQRDVLLHGSREPILIQADSRYRKGKAGYN
RPFEGILPILERQLRDASGEAQRQKLEKFLELVPCEACAGQRLRPEALAV
KVGPFCIPELTAVSVGQTLDRIEQLMGVGSHEGANPLLNDRQIQIGDLVL
REIRLRLKFLLDVGLDYLSLDRPAMTLSGGEAQRIRLATQIGAGLTGVLY
VLDEPSIGLHQRDNDRLLNTLVRLRDLGNTLVVVEHDEDTIRAADHVVDI
GPGAGVHGGHIVAEGSFEDLINSEASLTGAYLSGRRSIPTPAERRQSGTR
SLKLLDCNRNNLKNVSVEFPLGRLVSVTGVSGSGKSTLVNELLHPALENG
LGMKVPFPQGLAELRGLKSIDKVIVIDQSPIGRTPRSNPATYTGAFDPIR
QVFAATVEAKARGYQVGQFSFNVKGGRCEACRGQGVNVIEMNFLPDVYVQ
CDVCKGARFNRETLQVKYKGYTIADVLQMTVEQAAEVFDAIPQAADRLRT
LVDVGLGYVKLGQPAPTLSGGEAQRVKLATELSRRATGKTLYLIDEPTTG
LSFYDVHKLMDVMQRLVDKGNSIICIEHNLDVIRCSDWIIDLGPEGGDKG
GELLVTGTPEEVAQHPTSHTGRYLARVLEQHPPEIPLIAA
>SYNW0077 uvrB, excinuclease ABC subunit B
MPAYDLTAPYTPKGDQPTAIKQLVQGVNGGERYQTLLGATGTGKTFTMAN
VIAQTGRPALVLAHNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAY
VPVSDTYIAKTASINEEIDMLRHSATRSLFERRDVIVVASISCIYGLGIP
SEYLKAAVKFEVGETLNIRSQLRELVNNQYSRNDTEIARGRFRMKGDVLE
IGPAYEDRLVRIELFGDEVEAIRYVDPTTGEILQSLETVNIYPAKHFVTP
KDRLDSAIGEIRQELRDRLDFLNGEGKLLEAQRLEQRTKYDLEMLGQVGY
CNGVENYARHLAGREEGTPPECLIDYFPKDWLLIVDESHVTCSQLQAMYN
GDQARKKVLIEHGFRLPSAADNRPLKGEEFWEKAHQTVFVSATPGNWELE
VSGGEVAQQVIRPTGVLDPIVEVRPTTGQVDDLLGEIRDRASKQQRVLVT
TLTKRMAEDLTDYLAENEVRVRYLHSEIHSIERIEIIQDLRLGEYDVLVG
VNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVEGVALL
YADNMTESMAKAISETERRRKIQQTYNEKHGIVPTAAGKKASNSILSFLE
LSRKLKQDGPDADLVQVAGKAAQALEEDPDAGLALEALPELIDQLEGKMK
EAAKKLDFEDAANLRDRIKQLRQKMAG
>SYNW1246 uvrC, Excinuclease ABC subunit C (UvrC)
MPPLLTQPEVLERRLKEIPPEPGCYLMRDGEDRILYVGKSKSLRSRVRSY
FRSRHDLSPRIRLMTRQVCEIEFIVTDSEAEALALESNLIKNHQPHFNVL
LKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLDRFYGPYVDVGLLRRTL
FLVKRVFPLRQRPRPLHPDRTCLNYSIGRCPGVCQEKITSEDYHRTLRKV
AMVFQGRSDELQRLLDEQMNRYAERLDFESAARVRDQLQGLDQLTADQKM
SLPDSSVSRDVLALACDDRLAAVQLFQMRAGKLVGRLGYTADASALAPGL
ILQRVIEEHYSQVDAVEVPPELLVQHALPQQQLLEDWLTEQRERKVQIHC
PKQRQKADLIELVQRNAEFELLRAKQGQEQQALATEDLAQLLEMPTPPRR
IEGYDISHIQGSDAVASQVVFIDGLPAKQHYRKYKIRSSSIQSGHSDDFM
AMAEIMRRRFRRWARAKADGVDVGALRHKGGSALQTDGLNDWPDVVMIDG
GKGQLSAVMEALRELDLHEDLNVCSLAKQREEVFLPGESQPLESEPDQLG
VALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHF
HSIDAIQMASVDLLSKAPGVGTALARDIHGFFHPAEEAGQDECSEEPRAH
TA
>SYNW2158 yrvN, putative ATPase, AAA family
MQYPREKCSIGTVDADSLSQDLFTYQGEQRRRQQAPLADRMRPRTLEEFE
GQQGILAQGRLLRRAIKADRVGNLILHGPPGVGKTTLARIVANHTRAHFS
SLNAVLAGVKDLRAEVDAAKLRLERHGLRSILFIDEVHRFNSAQQDALLP
WVENGTVTLIGATTENPYFEVNKALVSRSRLFRLLPLEPDDLHQLLQRAL
NDEERGYGTRRVTVTPDAAAHLVDVAGGDARSLLNALELAVESSEPEPDG
VIQINLAIAEESIQQRAVLYDKQGDAHYDTISAFIKSLRGSDADAALFWL
SRMVEAGENPRFIFRRMLIAAGEDIGLADPQAIVVVEACAAAFERVGLPE
GLYPLAQAALYLAGTEKSNSVLGFFDALKSVREANRQDVPSHLRDANRDG
DSFGDGVGYRYPHAYAEHWVEQQYLPTALQGEVFWQPGQLGWEGERRERM
AERRAAQLAAAAELASEQPLLLSSGPDSPAMERWIQRQLGQEGERLHLLR
RRLWAGVSWQRQDRVLLLGCHSLLWALDPLRQVPEGGVTLICPSPDDRQR
LAAQIDLLEPERQPQLLDGFDALPSDQVFDWIGGRLGTVDLLETDWTELA
QTLTDHADSNASLRLLISCAGCGPAGALSASHIAETSLSQLVEQEQSWLQ
QLQIQTQPLEEQGWSLNTDQWDEVLTLPGGKSLAERWLANDSDYRRMLGS
IQPEPLQLLRTTLEGLGSEGLRLPMRHQLLAGKRSQPTTEHRVLSPQTER
A