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2024-05-19 15:15:24

Gene list

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COG category: Replication, recombination and repair
Organism: Synechococcus sp. WH 8102, WH8102

Number of genes found: 112

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Synechococcus sp. WH 8102, WH8102
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SYNW2181 possible exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2074450 1164 + 0.652062
NA SYNW0722 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS705112 603 - 0.583748
NA SYNW2039 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS1934243 840 + 0.657143
NA SYNW1367 carotenoid binding proteinSubName: Full=Carotenoid binding protein; chromosome CDS1353847 957 + 0.588297
NA SYNW0801 possible Staphylococcal nuclease homologueSubName: Full=Possible Staphylococcal nuclease homologue; chromosome CDS777761 357 + 0.630252
NA SYNW1818 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1741261 534 - 0.56367
NA SYNW1173 Uracil-DNA glycosylaseSubName: Full=Uracil-DNA glycosylase; EC=2.7.7.7; chromosome CDS1164411 564 + 0.609929
NA SYNW0952 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS912650 339 - 0.41003
NA SYNW1177 Transcriptional-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1167825 3579 - 0.621961
NA SYNW0905 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS866910 273 + 0.575092
NA SYNW0039 possible helicaseSubName: Full=Possible helicase; chromosome CDS37349 1620 + 0.642593
NA SYNW1680 putative 6-O-methylguanine DNA methyltransferase family proteinSubName: Full=Putative 6-O-methylguanine DNA methyltransferase family protein; chromosome CDS1617169 339 - 0.625369
NA SYNW1146 possible phage integraseSubName: Full=Possible phage integrase; chromosome CDS1140192 1143 - 0.539807
NA SYNW1030 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1026255 246 + 0.658537
NA SYNW1342 putative endonucleaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1333497 654 + 0.616208
NA SYNW1958 putative ATP-dependent DNA helicaseSubName: Full=Putative ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS1864491 1488 - 0.659946
NA SYNW0348 Staphylococcal nuclease homologueSubName: Full=Staphylococcal nuclease homologue; Flags: Precursor; chromosome CDS343315 615 - 0.526829
NA SYNW0642 hypotheticalSubName: Full=Uncharacterized protein; chromosome CDS627346 963 - 0.3946
NA SYNW1777 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1706536 438 + 0.646119
NA SYNW1206 possible single-stranded-DNA-specific exonucleaseSubName: Full=Possible single-stranded-DNA-specific exonuclease; EC=3.1.-.-; chromosome CDS1195302 1905 - 0.622572
NA SYNW2059 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1955929 1446 + 0.663209
NA SYNW0115 putative adenine glycosylaseSubName: Full=Putative adenine glycosylase; EC=3.2.2.-; chromosome CDS114154 1143 + 0.607174
NA SYNW0219 probable deoxyribodipyrimidine photolyaseSubName: Full=Probable deoxyribodipyrimidine photolyase; EC=4.1.99.3; chromosome CDS219192 1434 + 0.631799
NA SYNW0665 possible Recombination protein O (RecO)RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS649691 807 - 0.671623
NA SYNW1346 phage integrase familySubName: Full=Phage integrase family; chromosome CDS1338474 561 - 0.532977
NA SYNW2362 SNF2 helicase homologSubName: Full=SNF2 helicase homolog; chromosome CDS2267944 3192 + 0.649436
NA SYNW1748 Phage integrase familySubName: Full=Phage integrase family; chromosome CDS1680142 1191 + 0.65911
NA SYNW1051 conserved hypothetical proteinRecName: Full=UPF0102 protein SYNW1051; chromosome CDS1042693 405 + 0.632099
NA SYNW0587 DNA binding protein HUSubName: Full=DNA binding protein HU; chromosome CDS569614 276 + 0.594203
NA SYNW2099 phage integrase familySubName: Full=Phage integrase family; chromosome CDS1982292 1278 + 0.552426
NA SYNW0112 hypotheticalSubName: Full=Uncharacterized protein; chromosome CDS111257 282 + 0.574468
NA SYNW0218 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS218632 564 + 0.657801
NA SYNW0342 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS338614 360 - 0.680556
NA SYNW0370 possible integrase/recombinaseSubName: Full=Possible integrase/recombinase; chromosome CDS363372 912 + 0.547149
NA SYNW0005 putative DNA topoisomerase chain ASubName: Full=Putative DNA topoisomerase chain A; EC=5.99.1.3; chromosome CDS5899 2475 - 0.60404
NA SYNW1807 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS1733077 837 + 0.606929
NA SYNW0779 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS760576 474 + 0.668776
NA SYNW1351 partial homology to phage recombinaseSubName: Full=Partial homology to phage recombinase; chromosome CDS1342597 2004 - 0.501996
NA SYNW0369 weak similarity to phage integrase familySubName: Full=Weak similarity to phage integrase family; chromosome CDS361958 1203 - 0.60931
NA SYNW1662 phage integrase familySubName: Full=Phage integrase family; chromosome CDS1599483 1266 - 0.513428
NA SYNW0181 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; EC=3.6.1.-; chromosome CDS180173 2394 + 0.640769
NA SYNW0295 Methylpurine-DNA glycosylase (MPG)RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS294410 609 + 0.612479
NA SYNW0360 weak similarity to phage integrase familySubName: Full=Weak similarity to phage integrase family; chromosome CDS353145 1281 - 0.628415
NA SYNW0612 possible deoxyribonuclease similar to TatDSubName: Full=Possible deoxyribonuclease similar to TatD; EC=3.1.21.-; chromosome CDS591356 789 + 0.617237
NA SYNW1189 possible phage integrase familySubName: Full=Possible phage integrase family; chromosome CDS1180912 1356 - 0.537611
NA SYNW0564 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS554410 555 - 0.668468
NA SYNW2179 putative HrpA-like helicaseSubName: Full=Putative HrpA-like helicase; chromosome CDS2071435 2520 + 0.664286
NA SYNW0847 possible alkylated DNA repair proteinSubName: Full=Possible alkylated DNA repair protein; chromosome CDS818270 603 - 0.59204
NA SYNW1321 putative ATP-dependent DNA ligaseSubName: Full=Putative ATP-dependent DNA ligase; EC=6.5.1.1; chromosome CDS1315334 1671 + 0.611011
NA SYNW1757 putative deoxyribodipyrimidine photolyaseSubName: Full=Putative deoxyribodipyrimidine photolyase; EC=4.1.99.3; chromosome CDS1686900 1476 - 0.611789
NA SYNW1666 phage integrase familySubName: Full=Phage integrase family; chromosome CDS1605540 927 - 0.484358
NA SYNW0977 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS968928 306 + 0.598039
NA SYNW0346 Putative RNA methylase family UPF0020SubName: Full=Putative RNA methylase family UPF0020; chromosome CDS340858 1167 - 0.624679
NA SYNW0636 putative DNA helicaseSubName: Full=Putative DNA helicase; chromosome CDS617448 2730 + 0.625641
NA SYNW1570 possible phage integrase familySubName: Full=Possible phage integrase family; chromosome CDS1515669 1260 + 0.551587
NA SYNW0920 probable ATP-dependent RNA helicase DeaDRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; Flags: Precursor; chromosome CDS880771 1797 + 0.629939
NA SYNW0744 conserved hypotheticalSubName: Full=Conserved hypothetical; EC=3.1.11.5; chromosome CDS725117 1464 + 0.627049
NA SYNW1144 phage integrase familySubName: Full=Phage integrase family; chromosome CDS1135145 576 + 0.567708
NA SYNW0073 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS70142 966 - 0.679089
NA SYNW1180 hypotheticalSubName: Full=Putative uncharacterized protein; chromosome CDS1173010 411 + 0.540146
NA SYNW1667 partial phage integraseSubName: Full=Partial phage integrase; chromosome CDS1606485 345 - 0.576812
NA SYNW2241 weak similarity to phage integrase familySubName: Full=Weak similarity to phage integrase family; chromosome CDS2138970 1419 + 0.435518
NA SYNW1569 possible phage integraseSubName: Full=Possible phage integrase; chromosome CDS1513971 1140 - 0.572807
NA SYNW1108 possible site-specific recombinaseSubName: Full=Possible site-specific recombinase; chromosome CDS1099790 1899 - 0.503423
NA SYNW0395 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS389286 1314 - 0.595129
NA SYNW2182 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; Flags: Precursor; chromosome CDS2075610 261 + 0.59387
NA SYNW1145 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1137081 2112 - 0.520833
NA SYNW2389 Putative DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2295100 2040 + 0.638726
NA SYNW0689 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS672895 1455 - 0.64055
NA SYNW1578 Staphylococcal nuclease homologueSubName: Full=Staphylococcal nuclease homologue; chromosome CDS1521210 657 - 0.462709
NA SYNW0880 possible phage integrase familySubName: Full=Possible phage integrase family; chromosome CDS842611 1173 + 0.59676
NA SYNW0224 probable deoxyribodipyrimidine photolyaseSubName: Full=Probable deoxyribodipyrimidine photolyase; EC=4.1.99.3; chromosome CDS223452 900 - 0.661111
NA SYNW1493 conserved hypotheticalSubName: Full=Conserved hypothetical; chromosome CDS1446295 471 + 0.558386
NA SYNW2416 possible phage integrase familySubName: Full=Possible phage integrase family; chromosome CDS2321271 1269 - 0.558708
FPG SYNW1961 Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase)RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1867376 837 + 0.632019
dnaA SYNW1536 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1479573 1398 - 0.633763
dnaB SYNW2379 replicative DNA helicase DnaBSubName: Full=Replicative DNA helicase DnaB; EC=3.6.1.-; chromosome CDS2287622 1416 + 0.622881
dnaE SYNW1032 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1028073 3519 + 0.56607
dnaG SYNW1038 putative DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1034616 2052 + 0.622807
dnaN SYNW0001 DNA polymerase III beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS174 1158 + 0.608808
dnaQ SYNW1016 possible DNA polymerase III, epsilon subunitSubName: Full=Possible DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS1014624 771 + 0.623865
dnaX SYNW0061 DNA polymerase, gamma and tau subunitsSubName: Full=DNA polymerase, gamma and tau subunits; EC=2.7.7.7; chromosome CDS56384 1782 - 0.652637
gyrA SYNW0727 DNA gyrase A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS708691 2628 + 0.606545
gyrB SYNW0095 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS96148 1968 + 0.566565
holB SYNW2237 DNA polymerase III, delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS2134434 945 - 0.650794
mutS SYNW1931 putative DNA mismatch repair protein MutS familyRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS1834650 2439 - 0.663797
mutS,fdv SYNW0078 putative DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS75609 2703 - 0.668516
mutT SYNW1334 NUDIX family proteinSubName: Full=NUDIX family protein; chromosome CDS1327195 432 + 0.62037
polA SYNW0702 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS685443 2946 - 0.618466
priA SYNW1782 primosomal protein N' (replication factor Y)SubName: Full=Primosomal protein N (Replication factor Y); chromosome CDS1709712 2244 - 0.651515
psbU SYNW2191 photosystem II extrinsic protein (psbU)RecName: Full=Photosystem II 12 kDa extrinsic protein; AltName: Full=PS II complex 12 kDa extrinsic protein; AltName: Full=PSII-U; Flags: Precursor; chromosome CDS2089405 408 + 0.578431
recA SYNW2062 RecA bacterial DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1958102 1128 - 0.621454
recB SYNW0917 probable exodeoxyribonuclease V, beta subunit RecBSubName: Full=Probable exodeoxyribonuclease V, beta subunit RecB; EC=3.1.11.5; chromosome CDS875214 3561 + 0.660489
recC SYNW0914 probable exodeoxyribonuclease V, gamma subunit RecCSubName: Full=Probable exodeoxyribonuclease V, gamma subunit RecC; EC=3.1.11.5; chromosome CDS871211 3222 + 0.666046
recD SYNW0918 probable exodeoxyribonuclease V, alpha subunit RecDSubName: Full=Probable exodeoxyribonuclease V, alpha subunit RecD; EC=3.1.11.5; chromosome CDS878771 1554 + 0.671815
recF SYNW2049 putative DNA repair and genetic recombination protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS1946881 1098 + 0.674863
recG SYNW1093 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS1079115 2511 + 0.635205
recN SYNW2523 putative DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2428798 1683 - 0.610814
recR SYNW0928 RecR proteinRecName: Full=Recombination protein RecR; chromosome CDS889099 579 + 0.626943
rnhA SYNW2338 possible ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS2241126 747 - 0.629183
rnhB SYNW2144 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS2033555 720 - 0.643056
ruvA SYNW1035 putative holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1032334 618 - 0.555016
ruvB SYNW0135 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS131033 1047 + 0.647564
ruvC SYNW0715 Holliday junction resolvase RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS699792 465 - 0.630108
smf SYNW1977 putative DNA processing protein (Smf family)SubName: Full=Putative DNA processing protein (Smf family); Flags: Precursor; chromosome CDS1885897 1065 - 0.641315
ssb SYNW0121 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS119671 378 - 0.616402
topA SYNW1872 Prokaryotic DNA topoisomeraseRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; Flags: Precursor; chromosome CDS1785158 2703 - 0.624491
umuC SYNW1043 putative UmuC proteinSubName: Full=Putative UmuC protein; EC=3.4.21.-; chromosome CDS1038549 1281 - 0.655738
uvrA SYNW2522 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS2425780 2973 - 0.598385
uvrB SYNW0077 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS73579 2034 + 0.617011
uvrC SYNW1246 Excinuclease ABC subunit C (UvrC)RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1240869 1959 - 0.610005
yrvN SYNW2158 putative ATPase, AAA familySubName: Full=Putative ATPase, AAA family; chromosome CDS2051837 2256 + 0.636082