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2024-05-18 11:29:44

Gene list

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COG category: Replication, recombination and repair
Organism: Bordetella bronchiseptica, RB50

Number of genes found: 138

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Bordetella bronchiseptica, RB50
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA BB4534 putative endonucleaseSubName: Full=Putative endonuclease; chromosome CDS4831538 789 + 0.646388
NA BB1437 putative nuclease/helicaseSubName: Full=Putative nuclease/helicase; chromosome CDS1530399 3405 + 0.735683
NA BB3418 conserved hypothetical proteinRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS3662513 735 - 0.770068
NA BB2436 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS2589550 468 + 0.728632
NA BB0906 putative integraseSubName: Full=Putative integrase; chromosome CDS966029 1212 + 0.617162
NA BB1812 putative nucleaseSubName: Full=Putative nuclease; chromosome CDS1914453 639 + 0.749609
NA BB0497 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS525735 3117 - 0.526147
NA BB3983 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS4232973 1272 - 0.690252
NA BB2496 putative exodeoxyribonuclease IIISubName: Full=Putative exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS2650557 783 - 0.671775
NA BB1668 modification methylaseSubName: Full=Modification methylase; EC=2.1.1.73; chromosome CDS1769786 1935 - 0.660465
NA BB0017 putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS20757 1233 + 0.716139
NA BB4404 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS4690699 402 - 0.689055
NA BB3048 possible exonucleaseSubName: Full=Possible exonuclease; chromosome CDS3254022 1122 - 0.729947
NA BB0908 putative helicaseSubName: Full=Putative helicase; chromosome CDS968645 3288 + 0.564173
NA BB1560 putative lipoproteinSubName: Full=Putative lipoprotein; chromosome CDS1664839 681 - 0.69163
NA BB4839 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS5151544 765 + 0.726797
NA BB3909 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS4151976 1380 - 0.676087
NA BB3297 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3529310 618 - 0.684466
NA BB1810 probable ATP-dependent DNA helicaseSubName: Full=Probable ATP-dependent DNA helicase; chromosome CDS1911214 2094 + 0.711557
NA BB2192 phage-related DNA recombination proteinSubName: Full=Phage-related DNA recombination protein; chromosome CDS2340970 987 - 0.654509
NA BB3607 modification methylaseSubName: Full=Modification methylase; EC=2.1.1.72; chromosome CDS3834602 792 - 0.585859
NA BB0914 putative integraseSubName: Full=Putative integrase; chromosome CDS981172 714 - 0.616247
NA BB0942 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1018673 621 - 0.692432
NA BB3461 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3705109 585 - 0.767521
NA BB3808 bacteriophage-related DNA polymeraseSubName: Full=Bacteriophage-related DNA polymerase; chromosome CDS4033621 729 - 0.750343
NA BB2845 Putative ATP-dependent DNA-ligaseSubName: Full=Putative ATP-dependent DNA-ligase; chromosome CDS3008333 2463 + 0.72838
NA BB4410 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS4695105 1626 + 0.707872
NA BB3088 putative DNA polymerase III alpha chainRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS3292075 3159 + 0.709718
NA BB1851 putative exonucleaseSubName: Full=Putative exonuclease; chromosome CDS1959184 744 + 0.678763
NA BB4061 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS4319864 702 + 0.726496
NA BB3017 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3221677 780 - 0.667949
NA BB0307 putative DNA methylaseSubName: Full=Putative DNA methylase; chromosome CDS311072 2196 - 0.722678
NA BB2210 phage-related conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2351285 684 + 0.69152
NA BB4601 putative primosomal proteinSubName: Full=Putative primosomal protein; chromosome CDS4900495 2103 - 0.719448
NA BB1436 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS1527726 2661 + 0.745209
NA BB1235 DNA-3-methyladenine glycosylase 1SubName: Full=DNA-3-methyladenine glycosylase 1; EC=3.2.2.21; chromosome CDS1327161 660 - 0.74697
NA BB3744 hypothetical proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS3968063 588 - 0.697279
NA BB3442 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3685560 726 - 0.687328
NA BB2209 phage-related hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2350347 942 + 0.654989
NA BB2061 conserved hypothetical proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS2205416 900 - 0.637778
NA BB0500 putative integraseSubName: Full=Putative integrase; chromosome CDS530239 366 - 0.63388
NA BB2056 putative exported endonuleaseSubName: Full=Putative exported endonulease; chromosome CDS2201949 741 - 0.672065
NA BB3403 putative ATP-dependent helicaseSubName: Full=Putative ATP-dependent helicase; chromosome CDS3644022 3885 - 0.695495
NA BB4153 putative hydrolaseSubName: Full=Putative hydrolase; chromosome CDS4414218 660 - 0.668182
NA BB3412 putative methypurine-DNA glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS3657353 717 - 0.718271
NA BB2639 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS2800378 780 + 0.641026
NA BB0818 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS861007 1179 + 0.778626
NA BB3941 DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS4189187 1662 + 0.711793
NA BB2185 integraseSubName: Full=Integrase; chromosome CDS2336592 990 + 0.632323
NA BB3647 phage-related conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3862724 1776 + 0.643018
NA BB1736 DNA-3-methyladenine glycosylaseSubName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.21; chromosome CDS1824189 645 + 0.666667
NA BB4832 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS5142717 834 + 0.695444
NA BB0920 putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS992791 948 - 0.621308
NA BB1661 integraseSubName: Full=Integrase; chromosome CDS1765780 960 - 0.592708
NA BB2322 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS2472130 675 - 0.567407
NA BB3691 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3911789 1500 + 0.724
NA BB3446 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3688796 1275 - 0.687059
NA BB4515 conserved hypothetical proteinRecName: Full=UPF0102 protein BB4515; chromosome CDS4812799 534 + 0.786517
NA BB0190 putative integrase/recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS196476 981 - 0.741081
NA BB3606 shufflon-specific DNA recombinaseSubName: Full=Shufflon-specific DNA recombinase; chromosome CDS3833598 1002 + 0.642715
NA BB3509 phage-related conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3747660 684 - 0.69152
NA BB2840 Conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3005221 1026 + 0.752437
NA BB4138 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS4402025 1275 + 0.636863
NA BB3600 probable ATP-dependent helicaseSubName: Full=Probable ATP-dependent helicase; chromosome CDS3824971 2076 - 0.703757
NA BB3510 phage-related hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3748340 942 - 0.654989
NA BB2300 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; EC=3.1.21.-; chromosome CDS2430141 828 + 0.707729
NA BB0398 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS411642 546 + 0.602564
NA BB3737 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3962288 456 + 0.732456
NA BB2492 transposaseSubName: Full=Transposase; chromosome CDS2646061 261 - 0.551724
NA BB4137 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS4401461 222 - 0.612613
NA BB3086 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3289957 708 + 0.745763
NA BB0209 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS215743 1725 - 0.707246
NA BB3047 putative GTP-binding proteinSubName: Full=Putative GTP-binding protein; chromosome CDS3251380 2646 - 0.742252
NA BB3543 phage integraseSubName: Full=Phage integrase; chromosome CDS3762261 1224 + 0.655229
NA BB3087 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS3290681 1386 + 0.76912
NA BB0912 type III restriction-modification system methyltransferaseSubName: Full=Type III restriction-modification system methyltransferase; EC=2.1.1.72; chromosome CDS976070 1842 + 0.538002
NA BB4007 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS4256119 1821 - 0.69687
NA BB2053 hypothetical proteinSubName: Full=Putative uncharacterized protein; chromosome CDS2198881 282 + 0.592199
ada BB1234 O6-methylguanine-DNA methyltransferaseSubName: Full=O6-methylguanine-DNA methyltransferase; EC=2.1.1.63; chromosome CDS1326026 1077 - 0.744661
alkB BB4662 alkylated DNA repair proteinSubName: Full=Alkylated DNA repair protein; chromosome CDS4959069 651 + 0.728111
bph2 BB3374 DNA-binding protein Bph2SubName: Full=DNA-binding protein Bph2; chromosome CDS3604906 339 + 0.637168
dbpA BB4367 probable ATP-dependent RNA helicaseSubName: Full=Probable ATP-dependent RNA helicase; chromosome CDS4647674 1389 - 0.676746
dinP BB3093 DNA-damage-inducible protein pRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS3299031 1086 - 0.697053
dnaA BB4989 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS5310125 1443 - 0.638254
dnaB BB1919 DNA helicaseSubName: Full=DNA helicase; chromosome CDS2039773 1374 + 0.661572
dnaE BB3401 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS3639361 3492 - 0.669817
dnaG BB3162 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS3374239 2031 - 0.677991
dnaN BB4988 DNA polymerase iii, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS5309013 1116 - 0.637993
dnaQ BB4275 DNA polymerase III, epsilon chainSubName: Full=DNA polymerase III, epsilon chain; EC=2.7.7.7; chromosome CDS4551958 735 - 0.670748
dnaX BB1438 DNA polymerase III subunit TauSubName: Full=DNA polymerase III subunit Tau; EC=2.7.7.7; chromosome CDS1534372 2232 + 0.723118
fis BB4000 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS4249847 240 + 0.620833
gyrA BB3473 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS3716894 2634 - 0.65186
gyrB BB4987 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS5306465 2454 - 0.662184
holA BB3379 putative DNA polymerase III, delta subunitSubName: Full=Putative DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS3610494 1056 + 0.738636
holB BB2638 DNA polymerase III, delta' subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS2799285 1053 + 0.74264
hup BB3653 histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS3867544 282 + 0.631206
hupB BB1979 DNA-binding protein Hu-betaSubName: Full=DNA-binding protein Hu-beta; chromosome CDS2117579 273 + 0.626374
ihfA BB2042 integration host factor alpha-subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS2190913 342 + 0.654971
ihfB BB3466 integration host factor beta-subunitSubName: Full=Integration host factor beta-subunit; chromosome CDS3709424 333 - 0.636637
ligA BB3804 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS4025309 2091 - 0.693448
mfd BB3818 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS4042642 3456 + 0.686343
mutL BB4058 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS4315691 1890 + 0.721164
mutM BB0897 formamidopyrimidine-DNA glycosylaseSubName: Full=Formamidopyrimidine-DNA glycosylase; EC=3.2.2.23; chromosome CDS957012 732 - 0.726776
mutS BB1660 mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1763126 2598 - 0.708237
mutY BB4453 putative A/G-specific adenine glycosylaseSubName: Full=Putative A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS4745871 1077 + 0.732591
nth BB3785 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS4008423 636 + 0.650943
nudC BB4301 NADH pyrophosphataseSubName: Full=NADH pyrophosphatase; EC=3.6.1.-; chromosome CDS4578737 735 + 0.707483
nudH BB4231 putative Nudix hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS4506266 573 - 0.600349
ogt BB4513 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS4811225 573 - 0.724258
ogt BB4663 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS4959740 588 + 0.72619
parC BB3227 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS3445950 2316 - 0.689983
parE BB3229 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS3448894 2013 - 0.675112
polA BB3239 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS3465318 2715 - 0.67477
priB BB1915 primosomal replication protein nRecName: Full=Primosomal replication protein n; chromosome CDS2037664 324 + 0.635802
radC BB3258 DNA repair proteinRecName: Full=UPF0758 protein BB3258; chromosome CDS3488347 678 + 0.730088
recA BB2076 RecA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2221376 1062 + 0.642185
recG BB2939 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS3122138 1992 - 0.713855
recJ BB2296 single-stranded-DNA-specific exonucleaseSubName: Full=Single-stranded-DNA-specific exonuclease; EC=3.1.-.-; chromosome CDS2425470 1569 - 0.725303
recR BB1440 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS1537026 609 + 0.689655
rep BB4600 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS4898383 2070 - 0.66715
rhlE BB4914 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS5223306 1446 + 0.71231
rnhA BB4278 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS4557048 468 - 0.683761
rnhB BB2619 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS2782168 606 + 0.711221
ruvA BB4003 holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS4252374 573 + 0.685864
ruvB BB4006 holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS4255041 1074 + 0.695531
ruvC BB4002 crossover junction endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS4251745 549 + 0.723133
smf BB0244 conserved hypothetical proteinSubName: Full=Putative uncharacterized protein smf; chromosome CDS248017 1113 - 0.751123
ssb BB0077 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS74305 501 + 0.680639
topB BB4960 DNA topoisomerase iiiRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS5276718 2628 + 0.66172
ung BB0210 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS217706 753 - 0.699867
uvrA BB0075 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS69874 2859 - 0.678559
uvrA2 BB4032 putative excinuclease ABC subunitSubName: Full=Putative excinuclease ABC subunit; chromosome CDS4283196 5718 + 0.691326
uvrB BB2273 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS2403569 2028 + 0.662722
uvrC BB3343 putative excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS3569749 1740 - 0.679885
uvrD BB2178 DNA helicase IISubName: Full=DNA helicase II; EC=3.6.1.-; chromosome CDS2324960 2301 + 0.663625
xerD BB1429 integrase/recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS1521919 933 + 0.717042
xseA BB2011 exodeoxyribonuclease large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2148016 1392 + 0.733477
xseB BB1910 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS2032964 267 + 0.685393