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2024-05-17 11:22:18

Gene list

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COG category: Replication, recombination and repair
Organism: Bordetella parapertussis 12822, 12822

Number of genes found: 146

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Bordetella parapertussis 12822, 12822
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA BPP1640 putative DNA polymerase III alpha chainRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS1749271 3159 - 0.708769
NA BPP1666 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1776703 777 + 0.676963
NA BPP0187 putative integrase/recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS199918 981 - 0.740061
NA BPP1231 transposaseSubName: Full=Transposase; chromosome CDS1314553 1221 - 0.614251
NA BPP1690 conserved hypothetical proteinRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS1799770 735 + 0.770068
NA BPP2508 transposaseSubName: Full=Transposase; chromosome CDS2702288 1221 - 0.614251
NA BPP4131 putative primosomal proteinSubName: Full=Putative primosomal protein; chromosome CDS4465129 2103 - 0.718973
NA BPP3374 transposaseSubName: Full=Transposase; chromosome CDS3635894 1221 - 0.613432
NA BPP2252 transposaseSubName: Full=Transposase; chromosome CDS2398291 1221 + 0.613432
NA BPP0017 putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS20817 1227 + 0.715566
NA BPP2649 transposaseSubName: Full=Transposase; chromosome CDS2848193 1221 + 0.613432
NA BPP3777 transposaseSubName: Full=Transposase; chromosome CDS4090091 1221 - 0.614251
NA BPP4244 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4579702 834 + 0.695444
NA BPP1844 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS1966792 951 + 0.6551
NA BPP0490 putative DNA primaseSubName: Full=Putative DNA primase; chromosome CDS522859 1071 + 0.544351
NA BPP2470 transposaseSubName: Full=Transposase; chromosome CDS2647067 1221 + 0.611794
NA BPP3548 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS3835146 1434 - 0.679219
NA BPP3188 transposaseSubName: Full=Transposase; chromosome CDS3433405 1221 - 0.614251
NA BPP0205 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS219184 1749 - 0.702687
NA BPP1561 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1667095 780 + 0.638462
NA BPP1705 putative ATP-dependent helicaseSubName: Full=Putative ATP-dependent helicase; chromosome CDS1815082 3912 + 0.693507
NA BPP1021 DNA-3-methyladenine glycosylase 1SubName: Full=DNA-3-methyladenine glycosylase 1; EC=3.2.2.21; chromosome CDS1096045 660 - 0.751515
NA BPP3937 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4260259 1626 + 0.706642
NA BPP1696 putative methypurine-DNA glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS1804948 717 + 0.716876
NA BPP3357 bacteriophage-related DNA polymeraseSubName: Full=Bacteriophage-related DNA polymerase; chromosome CDS3617159 897 - 0.752508
NA BPP1370 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1471433 534 + 0.735955
NA BPP3457 transposaseSubName: Full=Transposase; chromosome CDS3734650 1221 - 0.614251
NA BPP2589 transposaseSubName: Full=Transposase; chromosome CDS2789775 1221 - 0.614251
NA BPP4247 transposaseSubName: Full=Transposase; chromosome CDS4584387 1221 + 0.613432
NA BPP2796 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS2993437 951 + 0.652997
NA BPP2401 putative exonucleaseSubName: Full=Putative exonuclease; chromosome CDS2567848 744 + 0.676075
NA BPP3085 possible exonucleaseSubName: Full=Possible exonuclease; chromosome CDS3325811 1122 - 0.730838
NA BPP3707 putative hydrolaseSubName: Full=Putative hydrolase; chromosome CDS4007629 660 - 0.665152
NA BPP0078 transposaseSubName: Full=Transposase; chromosome CDS74842 1221 - 0.613432
NA BPP0908 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS980747 951 - 0.6551
NA BPP0808 transposaseSubName: Full=Transposase; chromosome CDS869270 1221 + 0.614251
NA BPP1641 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1752438 1386 - 0.767677
NA BPP2931 transposaseSubName: Full=Transposase; chromosome CDS3141378 1221 + 0.613432
NA BPP1254 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1349386 675 - 0.568889
NA BPP0491 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS523892 1347 + 0.518931
NA BPP0396 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS416535 546 + 0.606227
NA BPP3286 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3545829 456 + 0.730263
NA BPP1219 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1294847 2661 + 0.745584
NA BPP3293 hypothetical proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS3551605 588 - 0.695578
NA BPP2362 putative nucleaseSubName: Full=Putative nuclease; chromosome CDS2523084 639 + 0.749609
NA BPP3200 probable ATP-dependent helicaseSubName: Full=Probable ATP-dependent helicase; chromosome CDS3444977 2076 - 0.702312
NA BPP0826 putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS892262 948 - 0.621308
NA BPP2668 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2865037 1026 - 0.746589
NA BPP0255 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS264487 951 - 0.654048
NA BPP2613 putative exported endonuleaseSubName: Full=Putative exported endonulease; chromosome CDS2812565 741 - 0.680162
NA BPP2886 transposaseSubName: Full=Transposase; chromosome CDS3091539 1221 - 0.613432
NA BPP4252 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4589888 765 + 0.724183
NA BPP0848 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS918108 621 - 0.689211
NA BPP0495 putative integraseSubName: Full=Putative integrase; chromosome CDS528774 351 - 0.626781
NA BPP2064 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS2209308 951 - 0.6551
NA BPP3139 transposaseSubName: Full=Transposase; chromosome CDS3379678 1221 + 0.613432
NA BPP1642 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1753840 708 - 0.74435
NA BPP3084 putative GTP-binding proteinSubName: Full=Putative GTP-binding protein; chromosome CDS3323178 2637 - 0.740614
NA BPP1903 transposaseSubName: Full=Transposase; chromosome CDS2037709 1221 + 0.613432
NA BPP2052 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; EC=3.1.21.-; chromosome CDS2192069 828 + 0.708937
NA BPP2353 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS2510626 951 - 0.6551
NA BPP3460 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3738023 1380 - 0.675362
NA BPP1810 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1932617 618 + 0.682848
NA BPP3113 transposaseSubName: Full=Transposase; chromosome CDS3351800 1221 + 0.613432
NA BPP4042 conserved hypothetical proteinRecName: Full=UPF0102 protein BPP4042; chromosome CDS4377695 534 + 0.782772
NA BPP3492 DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS3775267 1662 + 0.712395
NA BPP2163 putative lipoproteinSubName: Full=Putative lipoprotein; chromosome CDS2311281 567 - 0.694885
NA BPP1220 putative nuclease/helicaseSubName: Full=Putative nuclease/helicase; chromosome CDS1297520 3405 + 0.734214
NA BPP1610 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS1716524 951 - 0.6551
NA BPP3493 transposaseSubName: Full=Transposase; chromosome CDS3776961 1221 - 0.614251
NA BPP2284 DNA-3-methyladenine glycosylaseSubName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.21; chromosome CDS2431729 645 + 0.666667
NA BPP1662 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1773091 1296 + 0.68287
NA BPP3572 ATP-dependent DNA helicase; putative ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS3858145 1821 - 0.695772
NA BPP3931 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS4255852 402 - 0.691542
NA BPP0304 putative DNA methylaseSubName: Full=Putative DNA methylase; chromosome CDS315725 2196 - 0.721311
NA BPP1897 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS2031902 951 - 0.6551
NA BPP1654 transposaseSubName: Full=Transposase; chromosome CDS1764490 1221 - 0.614251
NA BPP4061 putative endonucleaseSubName: Full=Putative endonuclease; chromosome CDS4396372 789 + 0.647655
NA BPP3054 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3293490 780 - 0.666667
NA BPP3626 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3921717 747 + 0.721553
NA BPP2054 transposaseSubName: Full=Transposase; chromosome CDS2196529 1221 - 0.613432
NA BPP0750 transposase for IS1002SubName: Full=Transposase for IS1002; chromosome CDS795881 951 + 0.6551
NA BPP2610 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2809491 282 + 0.588652
NA BPP3815 transposaseSubName: Full=Transposase; chromosome CDS4131108 1221 - 0.614251
NA BPP0521 putative transposase (partial)SubName: Full=Putative transposase (Partial); Flags: Fragment; chromosome CDS552366 354 - 0.550847
NA BPP1422 putative exodeoxyribonuclease IIISubName: Full=Putative exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS1521966 783 - 0.67433
NA BPP2618 conserved hypothetical proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS2816025 900 - 0.64
ada BPP1020 O6-methylguanine-DNA methyltransferaseSubName: Full=O6-methylguanine-DNA methyltransferase; EC=2.1.1.63; chromosome CDS1094910 1077 - 0.746518
alkB BPP4192 alkylated DNA repair proteinSubName: Full=Alkylated DNA repair protein; chromosome CDS4523431 651 + 0.726574
bph2 BPP1734 DNA-binding protein Bph2SubName: Full=DNA-binding protein Bph2; chromosome CDS1857397 318 - 0.638365
dbpA BPP3894 probable ATP-dependent RNA helicaseSubName: Full=Probable ATP-dependent RNA helicase; chromosome CDS4212857 1389 - 0.677466
dinP BPP1635 DNA-damage-inducible protein pRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS1744389 1086 + 0.696133
dnaA BPP4401 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS4744528 1410 - 0.631206
dnaB BPP2472 DNA helicaseSubName: Full=DNA helicase; chromosome CDS2649201 1374 + 0.661572
dnaE BPP1707 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS1820164 3492 + 0.669817
dnaG BPP2841 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS3041132 2052 - 0.676901
dnaN BPP4400 DNA polymerase iii, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS4743416 1116 - 0.638889
dnaQ BPP3831 DNA polymerase III, epsilon chainSubName: Full=DNA polymerase III, epsilon chain; EC=2.7.7.7; chromosome CDS4147732 735 - 0.669388
dnaX BPP1221 DNA polymerase III subunit TauSubName: Full=DNA polymerase III subunit Tau; EC=2.7.7.7; chromosome CDS1301628 2127 + 0.722614
fis BPP3565 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS3851869 240 + 0.629167
gyrA BPP3134 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS3372539 2634 - 0.65224
gyrB BPP4399 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS4740868 2454 - 0.662184
holA BPP1729 putative DNA polymerase III, delta subunitSubName: Full=Putative DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS1851097 1056 - 0.74053
holB BPP1560 DNA polymerase III, delta' subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS1666002 1053 + 0.745489
hupB BPP2534 DNA-binding protein Hu-betaSubName: Full=DNA-binding protein Hu-beta; chromosome CDS2728252 273 + 0.626374
ihfA BPP2600 integration host factor alpha-subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS2802891 342 + 0.654971
ihfB BPP3127 integration host factor beta-subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS3365069 360 - 0.638889
ligA BPP3353 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS3608847 2091 - 0.692492
mfd BPP3367 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS3626181 3456 + 0.686632
mutL BPP3623 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS3917527 1890 + 0.719577
mutM BPP0813 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS874590 828 - 0.727053
mutS BPP2265 mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS2410415 2742 - 0.704595
mutY BPP3980 putative A/G-specific adenine glycosylaseSubName: Full=Putative A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS4310975 1077 + 0.729805
nth BPP3334 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS3591970 636 + 0.654088
nudH BPP3786 putative Nudix hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS4100746 573 - 0.593368
ogt BPP4193 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS4524102 588 + 0.727891
ogt BPP4040 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS4376121 573 - 0.727749
parC BPP1881 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS2012946 2316 + 0.690414
parE BPP1879 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS2010305 2013 + 0.676105
polA BPP1869 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS1993141 2715 + 0.674401
priB BPP2467 primosomal replication protein nRecName: Full=Primosomal replication protein n; chromosome CDS2645776 324 + 0.635802
radC BPP1850 DNA repair proteinRecName: Full=UPF0758 protein BPP1850; chromosome CDS1972227 678 - 0.733038
recA BPP2633 RecA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2831904 1062 + 0.642185
recG BPP2973 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS3194360 1992 - 0.714357
recJ BPP2048 single-stranded-DNA-specific exonucleaseSubName: Full=Single-stranded-DNA-specific exonuclease; EC=3.1.-.-; chromosome CDS2187398 1737 - 0.721934
recR BPP1223 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS1304135 651 + 0.700461
rep BPP4130 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS4463017 1986 - 0.668681
rhlE BPP4328 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS4661631 1446 + 0.711618
rnhA BPP3834 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS4152822 468 - 0.683761
rnhB BPP1541 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1648897 606 + 0.712871
ruvA BPP3568 holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS3854396 573 + 0.689354
ruvB BPP3571 holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS3857065 1074 + 0.6946
ruvC BPP3567 crossover junction endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS3853767 549 + 0.723133
smf BPP0240 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS251404 1113 - 0.75292
ssb BPP0077 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS74295 489 + 0.676892
topB BPP4374 DNA topoisomerase iiiRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS4715042 2628 + 0.66172
ung BPP0206 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS221099 753 - 0.699867
uvrA BPP0075 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS69864 2859 - 0.67751
uvrA2 BPP3597 putative excinuclease ABC subunitSubName: Full=Putative excinuclease ABC subunit; chromosome CDS3885181 5718 + 0.690801
uvrB BPP2025 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS2165493 2028 + 0.660256
uvrC BPP1765 putative excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1891108 1773 + 0.678511
uvrD BPP1990 DNA helicase IISubName: Full=DNA helicase II; EC=3.6.1.-; chromosome CDS2126389 2301 + 0.661886
xerD BPP1212 integrase/recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS1288992 933 + 0.71597
xseA BPP2566 exodeoxyribonuclease large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2758719 1392 + 0.731322
xseB BPP2462 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS2641080 267 + 0.685393
yeeB BPP1264 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1361743 2058 + 0.615646