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2024-05-02 19:37:02

Gene list

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COG category: Replication, recombination and repair
Organism: Bordetella parapertussis 12822, 12822

Number of genes found: 146

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bordetella parapertussis 12822, 12822
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BPP4131 putative primosomal proteinchromosome CDS4465129 2103 - 0.718973
NA BPP2401 putative exonucleasechromosome CDS2567848 744 + 0.676075
NA BPP3931 conserved hypothetical proteinchromosome CDS4255852 402 - 0.691542
NA BPP0017 putative membrane proteinchromosome CDS20817 1227 + 0.715566
NA BPP3084 putative GTP-binding proteinchromosome CDS3323178 2637 - 0.740614
NA BPP2931 transposasechromosome CDS3141378 1221 + 0.613432
NA BPP1422 putative exodeoxyribonuclease IIIchromosome CDS1521966 783 - 0.67433
NA BPP0304 putative DNA methylasechromosome CDS315725 2196 - 0.721311
NA BPP1021 DNA-3-methyladenine glycosylase 1chromosome CDS1096045 660 - 0.751515
NA BPP0396 conserved hypothetical proteinchromosome CDS416535 546 + 0.606227
NA BPP2613 putative exported endonuleasechromosome CDS2812565 741 - 0.680162
NA BPP2886 transposasechromosome CDS3091539 1221 - 0.613432
NA BPP1219 conserved hypothetical proteinchromosome CDS1294847 2661 + 0.745584
NA BPP2508 transposasechromosome CDS2702288 1221 - 0.614251
NA BPP1654 transposasechromosome CDS1764490 1221 - 0.614251
NA BPP3707 putative hydrolasechromosome CDS4007629 660 - 0.665152
NA BPP1254 hypothetical proteinchromosome CDS1349386 675 - 0.568889
NA BPP3777 transposasechromosome CDS4090091 1221 - 0.614251
NA BPP3460 conserved hypothetical proteinchromosome CDS3738023 1380 - 0.675362
NA BPP2796 transposase for IS1002chromosome CDS2993437 951 + 0.652997
NA BPP3937 conserved hypothetical proteinchromosome CDS4260259 1626 + 0.706642
NA BPP1610 transposase for IS1002chromosome CDS1716524 951 - 0.6551
NA BPP1642 conserved hypothetical proteinchromosome CDS1753840 708 - 0.74435
NA BPP1810 conserved hypothetical proteinchromosome CDS1932617 618 + 0.682848
NA BPP1561 conserved hypothetical proteinchromosome CDS1667095 780 + 0.638462
NA BPP0078 transposasechromosome CDS74842 1221 - 0.613432
NA BPP1231 transposasechromosome CDS1314553 1221 - 0.614251
NA BPP2618 conserved hypothetical proteinchromosome CDS2816025 900 - 0.64
NA BPP3085 possible exonucleasechromosome CDS3325811 1122 - 0.730838
NA BPP4042 conserved hypothetical proteinchromosome CDS4377695 534 + 0.782772
NA BPP0808 transposasechromosome CDS869270 1221 + 0.614251
NA BPP1370 conserved hypothetical proteinchromosome CDS1471433 534 + 0.735955
NA BPP2163 putative lipoproteinchromosome CDS2311281 567 - 0.694885
NA BPP2610 hypothetical proteinchromosome CDS2809491 282 + 0.588652
NA BPP0491 phage-related proteinchromosome CDS523892 1347 + 0.518931
NA BPP3054 conserved hypothetical proteinchromosome CDS3293490 780 - 0.666667
NA BPP1220 putative nuclease/helicasechromosome CDS1297520 3405 + 0.734214
NA BPP2668 Conserved hypothetical proteinchromosome CDS2865037 1026 - 0.746589
NA BPP4244 conserved hypothetical proteinchromosome CDS4579702 834 + 0.695444
NA BPP1844 transposase for IS1002chromosome CDS1966792 951 + 0.6551
NA BPP3626 conserved hypothetical proteinchromosome CDS3921717 747 + 0.721553
NA BPP1666 conserved hypothetical proteinchromosome CDS1776703 777 + 0.676963
NA BPP1705 putative ATP-dependent helicasechromosome CDS1815082 3912 + 0.693507
NA BPP0848 conserved hypothetical proteinchromosome CDS918108 621 - 0.689211
NA BPP2589 transposasechromosome CDS2789775 1221 - 0.614251
NA BPP2649 transposasechromosome CDS2848193 1221 + 0.613432
NA BPP0255 transposase for IS1002chromosome CDS264487 951 - 0.654048
NA BPP4247 transposasechromosome CDS4584387 1221 + 0.613432
NA BPP2353 transposase for IS1002chromosome CDS2510626 951 - 0.6551
NA BPP1662 conserved hypothetical proteinchromosome CDS1773091 1296 + 0.68287
NA BPP2362 putative nucleasechromosome CDS2523084 639 + 0.749609
NA BPP0205 putative ATP-dependent RNA helicasechromosome CDS219184 1749 - 0.702687
NA BPP0750 transposase for IS1002chromosome CDS795881 951 + 0.6551
NA BPP2252 transposasechromosome CDS2398291 1221 + 0.613432
NA BPP4061 putative endonucleasechromosome CDS4396372 789 + 0.647655
NA BPP2052 putative deoxyribonucleasechromosome CDS2192069 828 + 0.708937
NA BPP3548 putative ATP-dependent RNA helicasechromosome CDS3835146 1434 - 0.679219
NA BPP0908 transposase for IS1002chromosome CDS980747 951 - 0.6551
NA BPP3286 conserved hypothetical proteinchromosome CDS3545829 456 + 0.730263
NA BPP1690 conserved hypothetical proteinchromosome CDS1799770 735 + 0.770068
NA BPP2054 transposasechromosome CDS2196529 1221 - 0.613432
NA BPP3815 transposasechromosome CDS4131108 1221 - 0.614251
NA BPP0187 putative integrase/recombinasechromosome CDS199918 981 - 0.740061
NA BPP0495 putative integrasechromosome CDS528774 351 - 0.626781
NA BPP0521 putative transposase (partial)chromosome CDS552366 354 - 0.550847
NA BPP3188 transposasechromosome CDS3433405 1221 - 0.614251
NA BPP1641 conserved hypothetical proteinchromosome CDS1752438 1386 - 0.767677
NA BPP3357 bacteriophage-related DNA polymerasechromosome CDS3617159 897 - 0.752508
NA BPP3374 transposasechromosome CDS3635894 1221 - 0.613432
NA BPP3113 transposasechromosome CDS3351800 1221 + 0.613432
NA BPP1897 transposase for IS1002chromosome CDS2031902 951 - 0.6551
NA BPP3293 hypothetical proteinchromosome CDS3551605 588 - 0.695578
NA BPP3200 probable ATP-dependent helicasechromosome CDS3444977 2076 - 0.702312
NA BPP2064 transposase for IS1002chromosome CDS2209308 951 - 0.6551
NA BPP3457 transposasechromosome CDS3734650 1221 - 0.614251
NA BPP3139 transposasechromosome CDS3379678 1221 + 0.613432
NA BPP1903 transposasechromosome CDS2037709 1221 + 0.613432
NA BPP3492 DNA repair proteinchromosome CDS3775267 1662 + 0.712395
NA BPP3572 ATP-dependent DNA helicase; putative ATP-dependent DNA helicasechromosome CDS3858145 1821 - 0.695772
NA BPP2470 transposasechromosome CDS2647067 1221 + 0.611794
NA BPP2284 DNA-3-methyladenine glycosylasechromosome CDS2431729 645 + 0.666667
NA BPP0490 putative DNA primasechromosome CDS522859 1071 + 0.544351
NA BPP4252 conserved hypothetical proteinchromosome CDS4589888 765 + 0.724183
NA BPP1640 putative DNA polymerase III alpha chainchromosome CDS1749271 3159 - 0.708769
NA BPP3493 transposasechromosome CDS3776961 1221 - 0.614251
NA BPP0826 putative membrane proteinchromosome CDS892262 948 - 0.621308
NA BPP1696 putative methypurine-DNA glycosylasechromosome CDS1804948 717 + 0.716876
ada BPP1020 O6-methylguanine-DNA methyltransferasechromosome CDS1094910 1077 - 0.746518
alkB BPP4192 alkylated DNA repair proteinchromosome CDS4523431 651 + 0.726574
bph2 BPP1734 DNA-binding protein Bph2chromosome CDS1857397 318 - 0.638365
dbpA BPP3894 probable ATP-dependent RNA helicasechromosome CDS4212857 1389 - 0.677466
dinP BPP1635 DNA-damage-inducible protein pchromosome CDS1744389 1086 + 0.696133
dnaA BPP4401 chromosomal replication initiator proteinchromosome CDS4744528 1410 - 0.631206
dnaB BPP2472 DNA helicasechromosome CDS2649201 1374 + 0.661572
dnaE BPP1707 DNA polymerase III alpha subunitchromosome CDS1820164 3492 + 0.669817
dnaG BPP2841 DNA primasechromosome CDS3041132 2052 - 0.676901
dnaN BPP4400 DNA polymerase iii, beta chainchromosome CDS4743416 1116 - 0.638889
dnaQ BPP3831 DNA polymerase III, epsilon chainchromosome CDS4147732 735 - 0.669388
dnaX BPP1221 DNA polymerase III subunit Tauchromosome CDS1301628 2127 + 0.722614
fis BPP3565 DNA-binding proteinchromosome CDS3851869 240 + 0.629167
gyrA BPP3134 DNA gyrase subunit Achromosome CDS3372539 2634 - 0.65224
gyrB BPP4399 DNA gyrase subunit Bchromosome CDS4740868 2454 - 0.662184
holA BPP1729 putative DNA polymerase III, delta subunitchromosome CDS1851097 1056 - 0.74053
holB BPP1560 DNA polymerase III, delta' subunitchromosome CDS1666002 1053 + 0.745489
hupB BPP2534 DNA-binding protein Hu-betachromosome CDS2728252 273 + 0.626374
ihfA BPP2600 integration host factor alpha-subunitchromosome CDS2802891 342 + 0.654971
ihfB BPP3127 integration host factor beta-subunitchromosome CDS3365069 360 - 0.638889
ligA BPP3353 DNA ligasechromosome CDS3608847 2091 - 0.692492
mfd BPP3367 transcription-repair coupling factorchromosome CDS3626181 3456 + 0.686632
mutL BPP3623 DNA mismatch repair proteinchromosome CDS3917527 1890 + 0.719577
mutM BPP0813 formamidopyrimidine-DNA glycosylasechromosome CDS874590 828 - 0.727053
mutS BPP2265 mismatch repair proteinchromosome CDS2410415 2742 - 0.704595
mutY BPP3980 putative A/G-specific adenine glycosylasechromosome CDS4310975 1077 + 0.729805
nth BPP3334 endonuclease IIIchromosome CDS3591970 636 + 0.654088
nudH BPP3786 putative Nudix hydrolasechromosome CDS4100746 573 - 0.593368
ogt BPP4040 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS4376121 573 - 0.727749
ogt BPP4193 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS4524102 588 + 0.727891
parC BPP1881 topoisomerase IV subunit Achromosome CDS2012946 2316 + 0.690414
parE BPP1879 topoisomerase IV subunit Bchromosome CDS2010305 2013 + 0.676105
polA BPP1869 DNA polymerase Ichromosome CDS1993141 2715 + 0.674401
priB BPP2467 primosomal replication protein nchromosome CDS2645776 324 + 0.635802
radC BPP1850 DNA repair proteinchromosome CDS1972227 678 - 0.733038
recA BPP2633 RecA proteinchromosome CDS2831904 1062 + 0.642185
recG BPP2973 ATP-dependent DNA helicasechromosome CDS3194360 1992 - 0.714357
recJ BPP2048 single-stranded-DNA-specific exonucleasechromosome CDS2187398 1737 - 0.721934
recR BPP1223 recombination protein RecRchromosome CDS1304135 651 + 0.700461
rep BPP4130 ATP-dependent DNA helicasechromosome CDS4463017 1986 - 0.668681
rhlE BPP4328 putative ATP-dependent RNA helicasechromosome CDS4661631 1446 + 0.711618
rnhA BPP3834 ribonuclease HIchromosome CDS4152822 468 - 0.683761
rnhB BPP1541 ribonuclease HIIchromosome CDS1648897 606 + 0.712871
ruvA BPP3568 holliday junction DNA helicasechromosome CDS3854396 573 + 0.689354
ruvB BPP3571 holliday junction DNA helicasechromosome CDS3857065 1074 + 0.6946
ruvC BPP3567 crossover junction endodeoxyribonucleasechromosome CDS3853767 549 + 0.723133
smf BPP0240 conserved hypothetical proteinchromosome CDS251404 1113 - 0.75292
ssb BPP0077 single-strand binding proteinchromosome CDS74295 489 + 0.676892
topB BPP4374 DNA topoisomerase iiichromosome CDS4715042 2628 + 0.66172
ung BPP0206 uracil-DNA glycosylasechromosome CDS221099 753 - 0.699867
uvrA BPP0075 excinuclease ABC subunit Achromosome CDS69864 2859 - 0.67751
uvrA2 BPP3597 putative excinuclease ABC subunitchromosome CDS3885181 5718 + 0.690801
uvrB BPP2025 excinuclease ABC subunit Bchromosome CDS2165493 2028 + 0.660256
uvrC BPP1765 putative excinuclease ABC subunit Cchromosome CDS1891108 1773 + 0.678511
uvrD BPP1990 DNA helicase IIchromosome CDS2126389 2301 + 0.661886
xerD BPP1212 integrase/recombinasechromosome CDS1288992 933 + 0.71597
xseA BPP2566 exodeoxyribonuclease large subunitchromosome CDS2758719 1392 + 0.731322
xseB BPP2462 exodeoxyribonuclease VII small subunitchromosome CDS2641080 267 + 0.685393
yeeB BPP1264 conserved hypothetical proteinchromosome CDS1361743 2058 + 0.615646