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2024-05-09 03:55:19

Gene list

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COG category: Replication, recombination and repair
Organism: Vibrio cholerae O1 biovar eltor str. N16961, N16961

Number of genes found: 178

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Vibrio cholerae O1 biovar eltor str. N16961, N16961
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VC0012 chromosomal DNA replication initiator DnaAchromosome I CDS7397 1419 + 0.506695
VC0013 DNA polymerase III, beta chainchromosome I CDS8873 1101 + 0.497729
VC0014 recF proteinchromosome I CDS9991 1092 + 0.475275
VC0015 DNA gyrase, subunit Bchromosome I CDS11103 2418 + 0.504963
VC0048 smf proteinchromosome I CDS46075 1116 + 0.513441
VC0050 DNA topoisomerase I-related proteinchromosome I CDS47679 573 + 0.490401
VC0103 conserved hypothetical proteinchromosome I CDS99867 768 - 0.459635
VC0108 DNA polymerase Ichromosome I CDS103098 2805 + 0.501961
VC0115 conserved hypothetical proteinchromosome I CDS109475 492 + 0.5
VC0128 integrase/recombinase XerCchromosome I CDS122005 936 + 0.518162
VC0146 conserved hypothetical proteinchromosome I CDS136151 600 - 0.498333
VC0167 ATP-dependent DNA helicase Repchromosome I CDS164408 2016 + 0.487599
VC0177 hypothetical proteinchromosome I CDS177861 564 + 0.37766
VC0185 transposase, putativechromosome I CDS188166 1215 - 0.369547
VC0190 DNA helicase IIchromosome I CDS194214 2172 + 0.530847
VC0196 ATP-dependent DNA helicase RecQchromosome I CDS201803 1863 + 0.52657
VC0217 DNA repair protein RadCchromosome I CDS225260 675 + 0.512593
VC0221 formamidopyrimidine-DNA glycosylasechromosome I CDS227365 810 + 0.522222
VC0227 conserved hypothetical proteinchromosome I CDS231950 756 + 0.46164
VC0253 IS1004 transposase-related proteinchromosome I CDS260555 81 + 0.469136
VC0256 transposase OrfAB, subunit Achromosome I CDS262326 345 + 0.431884
VC0257 transposase OrfAB, subunit Bchromosome I CDS262667 873 + 0.444444
VC0266 conserved hypothetical proteinchromosome I CDS271990 573 - 0.542757
VC0273 DNA-binding protein HUchromosome I CDS278432 273 + 0.472527
VC0290 factor-for-inversion stimulation proteinchromosome I CDS299889 297 - 0.427609
VC0299 DNA polymerase III, epsilon subunit, putativechromosome I CDS307273 672 - 0.508929
VC0305 ATP-dependent RNA helicase RhlBchromosome I CDS316344 1317 - 0.509491
VC0331 MutT/nudix family proteinchromosome I CDS349459 810 + 0.503704
VC0334 hypothetical proteinchromosome I CDS352411 960 + 0.513542
VC0345 DNA mismatch repair protein MutLchromosome I CDS367072 1962 + 0.503568
VC0367 primosomal replication protein Nchromosome I CDS384569 303 + 0.455446
VC0371 replicative DNA helicasechromosome I CDS386594 1407 + 0.50462
VC0394 excinuclease ABC, subunit Achromosome I CDS417655 2823 - 0.489196
VC0397 single-strand binding proteinchromosome I CDS422614 534 + 0.498127
VC0452 A/G-specific adenine glycosylasechromosome I CDS483198 1062 - 0.514124
VC0466 conserved hypothetical proteinchromosome I CDS495796 423 - 0.515366
VC0470 extracellular deoxyribonucleasechromosome I CDS498737 696 - 0.498563
VC0498 ribonuclease HI, putativechromosome I CDS530684 441 + 0.464853
VC0510 DNA repair protein RadC-related proteinchromosome I CDS539531 474 - 0.478903
VC0516 phage integrasechromosome I CDS548780 1242 - 0.403382
VC0535 DNA mismatch repair protein MutSchromosome I CDS565832 2589 - 0.521823
VC0543 recA proteinchromosome I CDS574522 1239 + 0.469734
VC0580 conserved hypothetical proteinchromosome I CDS609256 369 - 0.433604
VC0601 ATP-dependent helicase HrpBchromosome I CDS626302 2463 + 0.552984
VC0656 DNA polymerase III, psi subunitchromosome I CDS700767 408 + 0.504902
VC0660 ATP-dependent RNA helicase SrmBchromosome I CDS705587 1272 - 0.516509
VC0668 DNA mismatch repair protein MutHchromosome I CDS715847 666 - 0.534535
VC0671 MutT/nudix family proteinchromosome I CDS717080 582 + 0.465636
VC0718 conserved hypothetical proteinchromosome I CDS771116 915 - 0.495082
VC0766 exodeoxyribonuclease VII, large subunitchromosome I CDS818470 1341 - 0.495899
VC0812 helicase-related proteinchromosome I CDS866873 2940 - 0.436395
VC0817 transposase, putativechromosome I CDS873242 984 + 0.450203
VC0847 integrase, phage familychromosome I CDS912856 1269 - 0.463357
VC0852 DNA repair protein RecNchromosome I CDS916733 1665 - 0.481682
VC0870 IS1004 transposasechromosome I CDS935917 438 + 0.388128
VC0891 exodeoxyribonuclease, small subunitchromosome I CDS950349 243 - 0.518519
VC0898 exodeoxyribonuclease IXchromosome I CDS956372 852 - 0.484742
VC0953 DNA polymerase III, delta subunitchromosome I CDS1016996 1029 - 0.494655
VC0971 DNA ligasechromosome I CDS1035251 2010 + 0.48209
VC1006 ribonuclease Tchromosome I CDS1077421 732 - 0.465847
VC1011 endonuclease IIIchromosome I CDS1080358 642 - 0.47352
VC1054 DNA polymerase III, subunits gamma and tauchromosome I CDS1122690 2079 + 0.515633
VC1056 recombination protein RecRchromosome I CDS1125183 603 + 0.525705
VC1065 methylated-DNA--protein-cysteine methyltransferase-related proteinchromosome I CDS1132052 303 - 0.488449
VC1108 conserved hypothetical proteinchromosome I CDS1177677 1350 + 0.524444
VC1212 DNA polymerase IIchromosome I CDS1287836 2364 - 0.48181
VC1214 excinuclease ABC, subunit Cchromosome I CDS1291219 1833 + 0.492089
VC1222 integration host factor, alpha subunitchromosome I CDS1300276 297 + 0.47138
VC1234 exodeoxyribonuclease Ichromosome I CDS1307189 1425 - 0.50807
VC1247 hypothetical proteinchromosome I CDS1318803 396 - 0.421717
VC1258 DNA gyrase, subunit Achromosome I CDS1330207 2685 + 0.511732
VC1290 DNA polymerase III, epsilon subunit, putativechromosome I CDS1368634 711 - 0.503516
VC1302 MutT/nudix family proteinchromosome I CDS1383034 615 - 0.461789
VC1342 MutT/nudix family proteinchromosome I CDS1428471 1398 + 0.479256
VC1377 conserved hypothetical proteinchromosome I CDS1471032 531 + 0.474576
VC1382 ATP-dependent helicase HrpAchromosome I CDS1472911 3930 + 0.505852
VC1384 hypothetical proteinchromosome I CDS1476980 483 + 0.484472
VC1392 deoxyribodipyrimidine photolyase, putativechromosome I CDS1483164 1515 + 0.533993
VC1407 ATP-dependent RNA helicase RhlEchromosome I CDS1499666 1194 + 0.48995
VC1454 RstA1 proteinchromosome I CDS1564822 1080 - 0.455556
VC1463 RstA2 proteinchromosome I CDS1571738 1080 - 0.456481
VC1477 transposase OrfAB, subunit Achromosome I CDS1583160 354 + 0.429379
VC1478 transposase OrfAB, subunit Bchromosome I CDS1583510 873 + 0.444444
VC1538 hypothetical proteinchromosome I CDS1649994 432 - 0.43287
VC1542 DNA ligasechromosome I CDS1654907 849 - 0.498233
VC1600 hypothetical proteinchromosome I CDS1713805 690 - 0.427536
VC1636 helicase-related proteinchromosome I CDS1761623 1974 + 0.513171
VC1642 hypothetical proteinchromosome I CDS1767753 402 - 0.480099
VC1672 DNA-3-methyladenine glycosidase Ichromosome I CDS1805139 582 - 0.482818
VC1730 DNA topoisomerase Ichromosome I CDS1867219 2631 - 0.503231
VC1758 integrase, phage familychromosome I CDS1896092 1236 + 0.440939
VC1786 DNA repair protein RadC, putativechromosome I CDS1936121 477 + 0.48847
VC1789 transposase OrfAB, subunit Bchromosome I CDS1937519 873 - 0.444444
VC1790 transposase OrfAB, subunit Achromosome I CDS1938388 345 - 0.431884
VC1799 hypothetical proteinchromosome I CDS1944387 1758 - 0.477247
VC1814 deoxyribodipyrimidine photolyasechromosome I CDS1954789 1386 + 0.505772
VC1845 Holliday junction DNA helicase RuvBchromosome I CDS1984896 1005 - 0.471642
VC1846 Holliday junction DNA helicase RuvAchromosome I CDS1985956 615 - 0.482927
VC1847 crossover junction endodeoxyribonuclease RuvCchromosome I CDS1986667 522 - 0.496169
VC1855 ATP-dependent helicase, DinG familychromosome I CDS1994235 2112 + 0.466856
VC1857 primosomal replication protein N``chromosome I CDS1997148 564 + 0.466312
VC1860 exodeoxyribonuclease IIIchromosome I CDS2000266 807 + 0.460967
VC1886 transcription-repair coupling factorchromosome I CDS2030443 3468 + 0.510092
VC1909 hypothetical proteinchromosome I CDS2059194 789 + 0.416984
VC1914 integration host factor, beta subunitchromosome I CDS2063247 279 - 0.476703
VC1917 conserved hypothetical proteinchromosome I CDS2066452 312 - 0.467949
VC1919 DNA-binding protein HU-betachromosome I CDS2068910 273 - 0.487179
VC1990 ATP-dependent helicase, DinG familychromosome I CDS2141426 1941 - 0.515198
VC2014 conserved hypothetical proteinchromosome I CDS2168521 768 - 0.455729
VC2015 DNA polymerase III, delta prime subunitchromosome I CDS2169279 975 - 0.478974
VC2043 DNA topoisomerase IIIchromosome I CDS2200578 1944 - 0.491255
VC2096 seqA proteinchromosome I CDS2257909 534 - 0.466292
VC2233 DNA polymerase III, epsilon subunitchromosome I CDS2388024 744 - 0.475806
VC2234 ribonuclease HIchromosome I CDS2388824 471 + 0.528662
VC2245 DNA polymerase III, alpha subunitchromosome I CDS2397732 3495 - 0.507296
VC2246 ribonuclease HIIchromosome I CDS2401250 621 - 0.515298
VC2287 DNA-damage-inducible protein Pchromosome I CDS2442332 1083 - 0.469991
VC2319 exodeoxyribonuclease V, 67 kDa subunitchromosome I CDS2466516 2121 - 0.525224
VC2320 exodeoxyribonuclease V, 135 kDa subunitchromosome I CDS2468633 3627 - 0.540392
VC2322 exodeoxyribonuclease V, 125 kDa subunitchromosome I CDS2472524 3447 - 0.527415
VC2353 conserved hypothetical proteinchromosome I CDS2509895 852 - 0.503521
VC2359 uracil-DNA glycosylasechromosome I CDS2514885 681 - 0.487518
VC2360 endonuclease IVchromosome I CDS2515934 861 - 0.478513
VC2385 RNA-directed DNA polymerasechromosome I CDS2549642 972 + 0.31893
VC2392 mutator MutT proteinchromosome I CDS2559842 399 - 0.491228
VC2417 single-stranded-DNA-specific exonuclease RecJchromosome I CDS2590808 1755 - 0.5151
VC2419 integrase/recombinase XerDchromosome I CDS2593375 909 - 0.504951
VC2430 topoisomerase IV, subunit Achromosome I CDS2603309 2286 - 0.521435
VC2431 topoisomerase IV, subunit Bchromosome I CDS2605598 1881 - 0.527379
VC2435 MutT/nudix family proteinchromosome I CDS2609692 627 - 0.467305
VC2459 DNA repair protein RecOchromosome I CDS2641725 726 - 0.511019
VC2502 DNA polymerase III, chi subunitchromosome I CDS2688155 450 + 0.504444
VC2506 RNA polymerase-associated protein HepAchromosome I CDS2693488 2910 - 0.518213
VC2564 ATP-dependent RNA helicase DbpAchromosome I CDS2746119 1383 - 0.505423
VC2626 DNA adenine methylasechromosome I CDS2796912 834 - 0.483213
VC2678 primosomal protein N`chromosome I CDS2845351 2205 - 0.526531
VC2711 ATP-dependent DNA helicase RecGchromosome I CDS2883212 2079 + 0.532949
VC2721 MutT/nudix family proteinchromosome I CDS2895391 615 + 0.478049
VCA0010 conserved hypothetical proteinchromosome II CDS8482 438 + 0.449772
VCA0057 deoxyribodipyrimidine photolyasechromosome II CDS64102 1410 + 0.507801
VCA0061 ATP-dependent RNA helicase, DEAD box familychromosome II CDS67304 1359 + 0.479765
VCA0198 site-specific DNA-methyltransferase, putativechromosome II CDS214574 1152 + 0.390625
VCA0202 IS1004 transposasechromosome II CDS219825 438 - 0.388128
VCA0204 ATP-dependent RNA helicase RhlEchromosome II CDS220767 1356 - 0.488938
VCA0275 IS1004 transposasechromosome II CDS292265 438 - 0.388128
VCA0281 integrase, putativechromosome II CDS300467 1158 + 0.458549
VCA0282 IS5 transposasechromosome II CDS301670 981 + 0.518858
VCA0291 site-specific recombinase IntI4chromosome II CDS309750 963 - 0.422638
VCA0313 MutT/nudix family proteinchromosome II CDS323508 387 + 0.410853
VCA0324 DNA-damage-inducible protein Jchromosome II CDS328280 279 - 0.430108
VCA0371 transposase OrfAB, subunit Bchromosome II CDS357184 873 - 0.444444
VCA0372 transposase OrfAB, subunit Achromosome II CDS358053 345 - 0.431884
VCA0421 hypothetical proteinchromosome II CDS387025 426 + 0.394366
VCA0447 haemagglutinin associated proteinchromosome II CDS400356 693 + 0.343434
VCA0472 IS5 transposasechromosome II CDS416601 981 - 0.518858
VCA0493 IS1004 transposasechromosome II CDS428335 438 + 0.390411
VCA0507 transposase OrfAB, subunit Achromosome II CDS435419 345 + 0.431884
VCA0508 transposase OrfAB, subunit Bchromosome II CDS435760 873 + 0.444444
VCA0520 exonuclease SbcD, putativechromosome II CDS450455 1140 + 0.500877
VCA0521 exonuclease SbcC, putativechromosome II CDS451596 3042 + 0.493754
VCA0544 conserved hypothetical proteinchromosome II CDS480084 1665 - 0.490691
VCA0592 MutT/nudix family proteinchromosome II CDS530597 561 - 0.472371
VCA0632 MutT/nudix family proteinchromosome II CDS568826 450 - 0.517778
VCA0717 helicase IVchromosome II CDS659756 2100 - 0.479524
VCA0739 conserved hypothetical proteinchromosome II CDS685631 306 - 0.503268
VCA0764 MutT/nudix family proteinchromosome II CDS708502 558 + 0.480287
VCA0768 ATP-dependent RNA helicase, DEAD box familychromosome II CDS711450 1269 - 0.499606
VCA0790 hypothetical proteinchromosome II CDS734399 1380 + 0.395652
VCA0791 transposase OrfAB, subunit Bchromosome II CDS735771 873 - 0.444444
VCA0792 transposase OrfAB, subunit Achromosome II CDS736640 345 - 0.431884
VCA0795 resolvase, putativechromosome II CDS738052 957 + 0.403344
VCA0804 ATP-dependent RNA helicase DeaDchromosome II CDS746491 1992 - 0.506526
VCA0878 integrase-related proteinchromosome II CDS831895 162 + 0.45679
VCA0880 hypothetical proteinchromosome II CDS832685 381 + 0.409449
VCA0961 hypothetical proteinchromosome II CDS910197 609 + 0.456486
VCA0990 ATP-dependent RNA helicase, DEAD box familychromosome II CDS944006 1287 - 0.508936
VCA1017 methylated-DNA--protein-cysteineS-methyltransferasechromosome II CDS965610 474 - 0.493671
VCA1085 conserved hypothetical proteinchromosome II CDS1039548 1671 - 0.475763