Gene list
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COG category: Replication, recombination and repair
Organism: Tropheryma whipplei TW08/27, TW08/27
Number of genes found: 61
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Tropheryma whipplei TW08/27, TW08/27 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | TW381 | putative secreted protein | chromosome | CDS | 412536 | 1209 | - | 0.419355 |
NA | TW394 | conserved hypothetical protein | chromosome | CDS | 430659 | 438 | + | 0.479452 |
NA | TW108 | putative DNA recombinase | chromosome | CDS | 107600 | 1050 | - | 0.479048 |
NA | TW165 | putative serine/threonine protein kinase | chromosome | CDS | 203335 | 1197 | + | 0.444444 |
NA | TW783 | putative DNA methylase | chromosome | CDS | 887009 | 882 | + | 0.459184 |
NA | TW713 | putative DNA polymerase | chromosome | CDS | 806432 | 1236 | - | 0.467638 |
NA | TW090 | ATP-dependent DNA helicase | chromosome | CDS | 88815 | 2232 | + | 0.448029 |
NA | TW691 | conserved large hypothetical protein | chromosome | CDS | 780347 | 3519 | - | 0.460642 |
NA | TW300 | putative DNA-binding/repair enzyme | chromosome | CDS | 337674 | 555 | - | 0.418018 |
NA | TW245 | putative ATP-dependent DNA helicase | chromosome | CDS | 272079 | 1758 | + | 0.466439 |
NA | TW101 | conserved hypothetical protein (putative ATP-binding) | chromosome | CDS | 100840 | 1572 | - | 0.454198 |
NA | TW386 | putative DNA uptake protein | chromosome | CDS | 420613 | 582 | + | 0.408935 |
NA | TW243 | putative ATP-dependent DNA helicase subunit | chromosome | CDS | 267878 | 2922 | + | 0.439425 |
NA | TW446 | putative TatD-family DNase | chromosome | CDS | 486396 | 867 | + | 0.4406 |
NA | TW109 | putative NUDIX hydrolase | chromosome | CDS | 110016 | 609 | - | 0.489327 |
NA | TW315 | putative DNA recombinase | chromosome | CDS | 348498 | 921 | + | 0.470141 |
NA | TW704 | putative exodeoxyribonuclease | chromosome | CDS | 798257 | 846 | + | 0.478723 |
NA | TW130 | putative helicase regulator | chromosome | CDS | 134760 | 2073 | + | 0.485769 |
NA | TW788 | putative serine/threonine-protein kinase | chromosome | CDS | 892514 | 1758 | + | 0.506257 |
NA | TW410 | conserved hypothetical protein | chromosome | CDS | 447831 | 1875 | + | 0.421867 |
NA | TW389 | conserved hypothetical protein | chromosome | CDS | 423503 | 930 | + | 0.476344 |
NA | TW312 | conserved hypothetical protein | chromosome | CDS | 345350 | 363 | + | 0.415978 |
NA | TW242 | putative ATP-dependent DNA helicase subunit | chromosome | CDS | 264900 | 2982 | + | 0.437626 |
NA | TW314 | putative DNA processing protein | chromosome | CDS | 347316 | 1146 | + | 0.482548 |
NA | TW656 | conserved hypothetical protein | chromosome | CDS | 749768 | 564 | - | 0.473404 |
dnaA | TW001 | chromosomal replication initiator protein DnaA | chromosome | CDS | 1 | 1437 | + | 0.388309 |
dnaB | TW752 | replicative DNA helicase | chromosome | CDS | 849132 | 1326 | + | 0.46908 |
dnaE | TW252 | DNA polymerase III alpha subunit | chromosome | CDS | 279326 | 3495 | + | 0.447783 |
dnaG | TW484 | DNA primase | chromosome | CDS | 522062 | 1812 | - | 0.449227 |
dnaN | TW002 | DNA polymerase III, beta chain | chromosome | CDS | 1767 | 1134 | + | 0.377425 |
dnaX | TW727 | DNA polymerase III subunit gamma/tau | chromosome | CDS | 822194 | 1569 | - | 0.457616 |
gyrA1 | TW273 | DNA gyrase subunit A | chromosome | CDS | 307631 | 2466 | - | 0.437551 |
gyrA1 | TW006 | DNA gyrase subunit A | chromosome | CDS | 6438 | 2460 | + | 0.492683 |
gyrB1 | TW005 | DNA gyrase subunit B | chromosome | CDS | 4485 | 1950 | + | 0.475897 |
gyrB2 | TW268 | DNA gyrase subunit B | chromosome | CDS | 301377 | 1989 | + | 0.459025 |
hup | TW128 | DNA-binding protein HU-alpha | chromosome | CDS | 132298 | 282 | + | 0.521277 |
ligA | TW354 | DNA ligase | chromosome | CDS | 386982 | 1887 | + | 0.439322 |
mfd | TW589 | transcription-repair coupling factor | chromosome | CDS | 662858 | 3747 | - | 0.430478 |
nei | TW374 | endonuclease VIII | chromosome | CDS | 406503 | 885 | + | 0.489266 |
polA | TW480 | DNA polymerase I | chromosome | CDS | 517394 | 1071 | - | 0.436041 |
recA | TW628 | recombinase A | chromosome | CDS | 715252 | 1314 | - | 0.488584 |
recF | TW003 | DNA replication and repair protein recF | chromosome | CDS | 2890 | 1092 | + | 0.389194 |
recG | TW195 | ATP-dependent DNA helicase RecG | chromosome | CDS | 232840 | 2022 | + | 0.472799 |
recN | TW111 | DNA repair protein RecN | chromosome | CDS | 115156 | 1638 | - | 0.450549 |
recO | TW487 | DNA repair protein RecO | chromosome | CDS | 526096 | 744 | - | 0.46371 |
recR | TW726 | recombination protein RecR | chromosome | CDS | 821589 | 597 | - | 0.479062 |
rnhA | TW531 | ribonuclease HI | chromosome | CDS | 569929 | 486 | + | 0.475309 |
ruvA | TW502 | holliday junction DNA helicase RuvA | chromosome | CDS | 541501 | 525 | - | 0.468571 |
ruvB | TW501 | holliday junction DNA helicase RuvB | chromosome | CDS | 540495 | 996 | - | 0.482932 |
ruvC | TW503 | crossover junction endodeoxyribonuclease RuvC | chromosome | CDS | 542124 | 552 | - | 0.467391 |
ssb1 | TW116 | single-strand binding protein | chromosome | CDS | 125457 | 561 | - | 0.513369 |
ssb2 | TW367 | single-strand DNA binding protein | chromosome | CDS | 399273 | 447 | + | 0.47651 |
topA | TW715 | DNA topoisomerase I | chromosome | CDS | 808491 | 2526 | - | 0.488124 |
ung | TW179 | uracil DNA glycosylase | chromosome | CDS | 221086 | 693 | + | 0.506494 |
uvrA | TW476 | excinuclease ABC subunit A | chromosome | CDS | 510167 | 2847 | - | 0.425711 |
uvrB | TW477 | excinuclease ABC subunit B | chromosome | CDS | 513025 | 2034 | - | 0.417896 |
uvrC | TW475 | excinuclease ABC subunit C | chromosome | CDS | 508335 | 1824 | - | 0.421601 |
xseA | TW665 | exodeoxyribonuclease VII large subunit | chromosome | CDS | 756796 | 1215 | + | 0.446091 |
xseB | TW666 | probable exodeoxyribonuclease VII small subunit | chromosome | CDS | 758059 | 366 | + | 0.467213 |
xthA1 | TW756 | exodeoxyribonuclease III | chromosome | CDS | 853087 | 810 | + | 0.471605 |
xthA1 | TW323 | exodeoxyribonuclease III | chromosome | CDS | 355281 | 840 | + | 0.496429 |