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2024-05-19 13:45:08

Gene list

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COG category: Replication, recombination and repair
Organism: Xylella fastidiosa 9a5c

Number of genes found: 148

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Xylella fastidiosa 9a5c
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA XF0968 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS926826 834 - 0.526379
NA XF1859 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1777003 1179 + 0.448685
NA XF0554 conserved hypothetical proteinRecName: Full=UPF0102 protein XF_0554; chromosome CDS543926 366 + 0.560109
NA XF1933 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; chromosome CDS1836138 795 + 0.537107
NA XF2157 DNA polymerase III, epsilon chainSubName: Full=DNA polymerase III, epsilon chain; chromosome CDS2047997 720 - 0.513889
NA XF2311 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS2194674 1884 - 0.556263
NA XF0680 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS650674 1419 - 0.570825
NA XF2290 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2178671 939 + 0.635783
NA XF2409 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2288085 1044 + 0.545977
NA XF2295 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2181723 1413 + 0.584572
NA XF2651 conserved hypothetical proteinRecName: Full=Ribosomal RNA large subunit methyltransferase K/L; Includes: RecName: Full=23S rRNA m2G2445 methyltransferase; EC=2.1.1.173; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RlmL; Includes: RecName: Full=23S rRNA m7G2069 methyltransferase; EC=2.1.1.264; AltName: Full=rRNA (guanine-N(7)-)-methyltransferase RlmK; chromosome CDS2535774 2247 - 0.580329
NA XF1912 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1818102 615 + 0.515447
NA XF0678 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS649115 1164 - 0.536082
NA XF0710 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS671302 582 + 0.556701
NA XF1392 single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein 2; Short=SSB 2; chromosome CDS1346189 495 + 0.551515
NA XF2692 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS2571566 771 - 0.508431
NA XF1190 histone-like proteinRecName: Full=DNA-binding protein HU; chromosome CDS1142556 285 + 0.491228
NA XF0045 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS40005 3582 + 0.55081
NA XF1998 DNA-binding proteinRecName: Full=Putative Fis-like DNA-binding protein; chromosome CDS1911707 273 + 0.505495
NA XF1902 holliday junction binding protein, DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1808333 1032 - 0.524225
NA XF0676 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; chromosome CDS647699 993 + 0.548842
NA XF0354 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS360636 2157 + 0.565137
NA XF1103 DNA polymerase ISubName: Full=DNA polymerase I; chromosome CDS1052911 2772 + 0.536075
NA XF0633 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS609069 1359 + 0.605592
NA XF2552 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS2429336 2682 - 0.553691
NA XF1807 DNA polymerase III subunitSubName: Full=DNA polymerase III subunit; chromosome CDS1720467 1827 + 0.52162
NA XF0361 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS369297 1416 + 0.507062
NA XF2008 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1918400 654 + 0.541284
NA XF2132 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2021692 681 + 0.535977
NA XF0170 formamidopyrimidine DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS177524 816 + 0.523284
NA XF1774 DNA methyltransferaseSubName: Full=DNA methyltransferase; chromosome CDS1690011 4019 - 0.604379
NA XF2313 site-specific DNA-methyltransferaseSubName: Full=Site-specific DNA-methyltransferase; chromosome CDS2197200 732 + 0.569672
NA XF2501 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2380518 582 - 0.556701
NA XF0050 DNA helicase IISubName: Full=DNA helicase II; chromosome CDS46805 2187 - 0.55144
NA XF1286 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1237020 1890 - 0.528042
NA XF1850 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1765042 489 - 0.505112
NA XF0252 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS262848 1845 - 0.568022
NA XF1353 topoisomerase IV subunitRecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1299220 2250 - 0.545778
NA XF0430 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS440844 1734 - 0.56286
NA XF0425 exodeoxyribonuclease V alpha chainSubName: Full=Exodeoxyribonuclease V alpha chain; chromosome CDS436565 1920 + 0.626562
NA XF0535 transposase OrfASubName: Full=Transposase OrfA; chromosome CDS528651 315 + 0.549206
NA XF1262 7,8-dihydro-8-oxoguanine-triphosphataseSubName: Full=7,8-dihydro-8-oxoguanine-triphosphatase; chromosome CDS1218184 507 + 0.52071
NA XF2288 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS2177071 1062 - 0.511299
NA XF1892 endonuclease V (deoxyinosine 3'endonuclease)RecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; chromosome CDS1800225 765 - 0.503268
NA XF1110 single-stranded DNA exonucleaseSubName: Full=Single-stranded DNA exonuclease; chromosome CDS1063270 1746 + 0.55441
NA XF1846 hypothetical protein chromosome CDS1761703 171 - 0.584795
NA XF1809 recombination proteinRecName: Full=Recombination protein RecR; chromosome CDS1722675 735 + 0.542857
NA XF2343 recombination protein NRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2222746 1674 + 0.543608
NA XF0568 conserved hypothetical proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS553855 909 - 0.514852
NA XF0001 chromosomal replication initiatorRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS143 1320 + 0.408333
NA XF0660 exodeoxyribonuclease small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS629777 267 + 0.565543
NA XF2437 integration host factor, beta subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS2320967 381 - 0.48294
NA XF2725 type I restriction-modification system endonucleaseSubName: Full=Type I restriction-modification system endonuclease; chromosome CDS2614467 3024 - 0.521495
NA XF2297 DNA methylaseSubName: Full=DNA methylase; chromosome CDS2183736 471 + 0.583864
NA XF0590 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS568586 702 + 0.565527
NA XF2122 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2016462 1053 - 0.645774
NA XF1966 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1875227 2523 - 0.579469
NA XF0480 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS487057 1173 - 0.541347
NA XF2178 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; chromosome CDS2064927 1032 + 0.547481
NA XF0325 transposase OrfASubName: Full=Transposase OrfA; chromosome CDS341646 315 + 0.549206
NA XF1845 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1761182 486 - 0.493827
NA XF0192 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS201673 1341 + 0.522744
NA XF2153 conserved hypothetical proteinRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS2044119 780 - 0.537179
NA XF0393 conserved hypothetical proteinRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS406080 573 + 0.509599
NA XF1904 holliday junction binding protein, DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1811385 585 - 0.511111
NA XF0164 exodeoxyribonucleaseSubName: Full=Exodeoxyribonuclease; chromosome CDS165137 801 + 0.484395
NA XF2598 6-O-methylguanine-DNA methyltransferaseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS2479082 522 + 0.52682
NA XF1943 histone-like proteinSubName: Full=Histone-like protein; chromosome CDS1844716 393 + 0.475827
NA XF2158 ribonuclease HRecName: Full=Ribonuclease HI; Short=RNase HI; EC=3.1.26.4; chromosome CDS2048713 462 - 0.521645
NA XF2059 conjugal transfer proteinRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS1958708 2058 + 0.518465
NA XF0979 conserved hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; chromosome CDS939355 603 + 0.587065
NA XF2739 type I restriction-modification system endonucleaseSubName: Full=Type I restriction-modification system endonuclease; chromosome CDS2630677 3177 - 0.565943
NA XF1556 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1515231 156 - 0.564103
NA XF1776 DNA topoisomerase IIIRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS1694565 1860 - 0.667742
NA XF0755 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS707473 1335 - 0.594007
NA XF0278 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS290340 660 + 0.557576
NA XF1326 DNA-3-methyladenine glycosidaseSubName: Full=DNA-3-methyladenine glycosidase; chromosome CDS1275868 651 + 0.557604
NA XF1778 single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1696852 453 - 0.673289
NA XF1299 DNA repair system specific for alkylated DNASubName: Full=DNA repair system specific for alkylated DNA; chromosome CDS1249695 603 + 0.537313
NA XF1644 single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1587265 456 - 0.541667
NA XF2525 phage-related DNA polymeraseSubName: Full=Phage-related DNA polymerase; chromosome CDS2398492 2181 + 0.634113
NA XF0967 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS924533 2010 + 0.50199
NA XF1913 type V secretory pathway proteinSubName: Full=Type V secretory pathway protein; chromosome CDS1818848 807 - 0.520446
NA XF2227 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS2115285 468 - 0.604701
NA XF1041 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1000079 705 - 0.539007
NA XF2146 ribonuclease TRecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS2038701 636 + 0.514151
NA XF0002 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1759 1101 + 0.374205
NA XF0631 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS607242 1242 + 0.582126
NA XF1558 single-stranded DNA binding proteinSubName: Full=Single-stranded DNA binding protein; chromosome CDS1515650 240 - 0.545833
NA XF1383 helicase, ATP dependentSubName: Full=Helicase, ATP dependent; chromosome CDS1330862 4437 + 0.571557
NA XF1980 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1890629 375 + 0.450667
NA XF1381 DNA helicaseSubName: Full=DNA helicase; chromosome CDS1328281 1938 - 0.569143
NA XF0969 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS927910 207 - 0.541063
NA XF1453 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1398634 1290 + 0.545736
NA XF0188 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS197335 558 - 0.546595
NA XF0148 DNA repair proteinRecName: Full=UPF0758 protein XF_0148; chromosome CDS151195 699 - 0.570815
NA XF0003 DNA replication and repair RecF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS3161 1095 + 0.410959
NA XF2291 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2179606 759 + 0.627141
NA XF1647 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1589531 1644 - 0.573601
NA XF1909 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; chromosome CDS1814457 1074 - 0.519553
NA XF2528 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2401429 1419 + 0.570825
NA XF0924 DNA processing chain ASubName: Full=DNA processing chain A; chromosome CDS888220 1164 - 0.57646
NA XF2022 exodeoxyribonuclease IRecName: Full=Exodeoxyribonuclease I; EC=3.1.11.1; chromosome CDS1929515 1485 + 0.56633
NA XF0536 transposase OrfBSubName: Full=Transposase OrfB; chromosome CDS528966 1173 + 0.56607
NA XF1905 holliday junction resolvase, endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1812055 615 - 0.504065
NA XF0743 integration host factor, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS698556 300 + 0.466667
NA XF0935 methyltransferaseSubName: Full=Methyltransferase; chromosome CDS898699 936 + 0.527778
NA XF1968 methyltransferaseSubName: Full=Methyltransferase; chromosome CDS1877948 1605 - 0.533956
NA XF0136 DNA polymerase III holoenzyme chi subunitSubName: Full=DNA polymerase III holoenzyme chi subunit; chromosome CDS135537 426 - 0.615023
NA XF0204 DNA polymerase III, alpha chainRecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS210293 3639 - 0.547128
NA XF1235 hypothetical protein chromosome CDS1191830 156 + 0.538462
NA XF2478 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2361085 408 + 0.519608
NA XF2680 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS2556133 2043 - 0.51395
NA XF2426 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS2305586 2898 + 0.55038
NA XF2131 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2021351 345 + 0.582609
NA XF0505 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS499912 1053 + 0.645774
NA XF0647 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS618629 657 + 0.512938
NA XF1441 phosphohydrolaseSubName: Full=Phosphohydrolase; chromosome CDS1385226 459 - 0.538126
NA XF1120 bifunctional DGTP-pyrophosphohydrolase/thiamine phosphate synthaseSubName: Full=Bifunctional DGTP-pyrophosphohydrolase/thiamine phosphate synthase; chromosome CDS1079557 963 + 0.597092
NA XF2689 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS2566888 2202 + 0.546776
NA XF1642 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1585980 1020 - 0.532353
NA XF0177 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS187211 783 - 0.521073
NA XF0123 recombination protein RecARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS119366 1044 + 0.519157
NA XF1804 site-specific DNA-methyltransferaseSubName: Full=Site-specific DNA-methyltransferase; chromosome CDS1717816 882 + 0.49093
NA XF1425 integrase/recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS1372648 975 - 0.56718
NA XF1718 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS1638946 1962 + 0.653415
NA XF0071 formamidopyrimidine DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS71808 816 + 0.523284
NA XF0760 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS713046 1860 + 0.585484
NA XF2081 DNA-damage-inducible proteinSubName: Full=DNA-damage-inducible protein; chromosome CDS1973260 261 - 0.586207
NA XF2696 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS2574884 1635 - 0.519878
NA XF0593 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS571736 330 + 0.475758
NA XF1229 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS1179829 2502 - 0.579137
NA XF2530 phage-related integraseSubName: Full=Phage-related integrase; chromosome CDS2403249 1020 + 0.557843
NA XF2303 transposaseSubName: Full=Transposase; chromosome CDS2188752 567 - 0.520282
NA XF1483 site-specific recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS1428586 885 + 0.562712
NA XF0641 DNA methyltransferaseSubName: Full=DNA methyltransferase; chromosome CDS614678 1143 - 0.566929
NA XF1555 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1514347 855 - 0.521637
NA XF2556 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2435757 2514 - 0.58035
NA XF0482 single-stranded DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS488523 447 - 0.55481
NA XF0882 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS839676 2127 - 0.590973
NA XF2011 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1921264 222 + 0.513514
NA XF0423 exodeoxyribonuclease V beta chainSubName: Full=Exodeoxyribonuclease V beta chain; chromosome CDS432697 3639 + 0.610882
NA XF0683 phage-related DNA polymeraseSubName: Full=Phage-related DNA polymerase; chromosome CDS652861 2181 - 0.630903
NA XF2028 DNA invertaseSubName: Full=DNA invertase; chromosome CDS1934942 558 - 0.528674
NA XF0005 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS4763 2445 + 0.467894
NA XF0422 exodeoxyribonuclease V gamma chainSubName: Full=Exodeoxyribonuclease V gamma chain; chromosome CDS429245 3366 + 0.610517
NA XF2248 DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2138170 732 + 0.539617
NA XF1716 mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1634849 2712 + 0.546091