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2024-04-29 22:54:37

Gene list

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COG category: Replication, recombination and repair
Organism: Staphylococcus aureus subsp. aureus Mu50, Mu50

Number of genes found: 195

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Staphylococcus aureus subsp. aureus Mu50, Mu50
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SAV1983 single-strand DNA-binding proteinchromosome CDS2114047 471 - 0.360934
NA SAV0068 transposasechromosome CDS70997 315 - 0.307937
NA SAV0812 similar to secreted von Willebrand factor-binding proteinchromosome CDS890190 1503 + 0.295409
NA SAV0026 hypothetical proteinchromosome CDS36165 240 + 0.245833
NA SAV1975 hypothetical proteinchromosome CDS2111018 243 - 0.292181
NA SAV0783 integrasechromosome CDS868462 1107 - 0.338753
NA SAV1390 truncated transposasechromosome CDS1471928 297 + 0.289562
NA SAV1433 similar to cell wall enzyme EbsBchromosome CDS1513880 402 + 0.323383
NA SAV0491 putative deoxyribonucleasechromosome CDS545397 774 + 0.368217
NA SAV1453 primosomal protein DnaDchromosome CDS1566812 687 - 0.305677
NA SAV0093 hypothetical proteinchromosome CDS98710 3153 + 0.312401
NA SAV2259 conserved hypothetical proteinchromosome CDS2386462 165 + 0.333333
NA SAV0284 hypothetical proteinchromosome CDS330435 459 + 0.324619
NA SAV2209 hypothetical proteinchromosome CDS2352221 1017 - 0.273353
NA SAV0869 hypothetical proteinchromosome CDS928139 786 + 0.343511
NA SAV1523 probable exodeoxyribonuclease VII large subunitchromosome CDS1640443 1338 - 0.312407
NA SAV1444 similar to methyltransferasechromosome CDS1558845 1146 - 0.356894
NA SAV0414 hypothetical proteinchromosome CDS457910 2190 - 0.302283
NA SAV2483 hypothetical proteinchromosome CDS2618161 327 - 0.287462
NA SAV0418 probable transposasechromosome CDS463948 297 - 0.249158
NA SAV2212 truncated IS232 IstB protein homologchromosome CDS2356009 324 - 0.287037
NA SAV0873 phi PVL ORF 50chromosome CDS929919 372 + 0.373656
NA SAV2489 similar to putative helicasechromosome CDS2624332 1332 - 0.28979
NA SAV0864 single strand DNA binding proteinchromosome CDS925247 426 + 0.370892
NA SAV0966 similar to ATP-dependent nuclease subunit Bchromosome CDS1008661 3474 + 0.322395
NA SAV1805 truncated transposasechromosome CDS1933762 255 - 0.294118
NA SAV1482 probable ATP-dependent DNA helicase RecQchromosome CDS1596819 1380 - 0.337681
NA SAV1895 DNA polymerase IVchromosome CDS2034709 1071 - 0.344538
NA SAV1821 hypothetical proteinchromosome CDS1950324 789 + 0.249683
NA SAV2012 similar to bacteriophage terminase small subunitchromosome CDS2138368 570 - 0.370175
NA SAV1124 similar to methyltransferasechromosome CDS1177668 543 + 0.316759
NA SAV1894 DNA polymerase III, alpha chain PolC-typechromosome CDS2034087 555 + 0.318919
NA SAV0892 hypothetical proteinchromosome CDS939209 534 + 0.348315
NA SAV0789 hypothetical proteinchromosome CDS871196 318 + 0.286164
NA SAV2488 similar to putative helicasechromosome CDS2622802 1491 - 0.267606
NA SAV1522 probable exodeoxyribonuclease VII small subunitchromosome CDS1640220 231 - 0.30303
NA SAV2216 hypothetical proteinchromosome CDS2358204 948 + 0.257384
NA SAV0076 hypothetical proteinchromosome CDS82790 903 - 0.366556
NA SAV0750 similar to comF operon protein 1chromosome CDS827988 903 + 0.318937
NA SAV2081 ATP-dependent RNA helicasechromosome CDS2212334 1521 - 0.365549
NA SAV0488 conserved hypothetical proteinchromosome CDS542019 249 + 0.337349
NA SAV1346 similar to exonuclease SbcCchromosome CDS1419359 3030 + 0.285149
NA SAV2215 truncated IS232 IstA protein homologchromosome CDS2357033 327 - 0.327217
NA SAV2150 hypothetical proteinchromosome CDS2276885 171 + 0.321637
NA SAV1787 truncated transposasechromosome CDS1918091 780 + 0.291026
NA SAV0620 hypothetical proteinchromosome CDS693645 561 + 0.301248
NA SAV1140 putative ribonuclease HIIIchromosome CDS1194533 939 - 0.329073
NA SAV1440 putative 5'-3' exonucleasechromosome CDS1552241 879 - 0.321957
NA SAV2490 similar to mutator protein mutTchromosome CDS2625665 393 - 0.312977
NA SAV2572 hypothetical proteinchromosome CDS2722273 321 + 0.358255
NA SAV1448 conserved hypothetical proteinchromosome CDS1561555 351 - 0.293447
NA SAV0413 hypothetical proteinchromosome CDS456120 1794 - 0.290412
NA SAV2586 hypothetical proteinchromosome CDS2732413 369 - 0.373984
NA SAV1636 similar to single-strand DNA-specific exonucleasechromosome CDS1745207 2274 - 0.325418
NA SAV0885 phage terminase, small subunitchromosome CDS933511 441 + 0.331066
NA SAV1590 similar to ComEAchromosome CDS1701507 678 - 0.29351
NA SAV1794 conserved hypothetical proteinchromosome CDS1925297 480 - 0.352083
NA SAV0467 conserved hypothetical proteinchromosome CDS510862 396 + 0.340909
NA SAV1786 truncated transposasechromosome CDS1917924 249 + 0.281125
NA SAV1627 similar to ATPase, AAA familychromosome CDS1734539 1275 + 0.360784
NA SAV1844 probable phosphoesterasechromosome CDS1975460 1197 - 0.299081
NA SAV0608 putative endonuclease IIIchromosome CDS683434 636 + 0.283019
NA SAV1982 hypothetical proteinchromosome CDS2113124 894 - 0.33557
NA SAV1980 hypothetical proteinchromosome CDS2112486 417 - 0.321343
NA SAV0835 conserved hypothetical proteinchromosome CDS906477 387 + 0.30491
NA SAV1887 hypothetical proteinchromosome CDS2026912 387 - 0.260982
NA SAV1689 similar to formamidopyrimidine-DNA glycosidasechromosome CDS1797602 873 - 0.323024
NA SAV1712 conserved hypothetical proteinchromosome CDS1831084 948 - 0.31962
NA SAV1558 ATP-dependent RNA helicasechromosome CDS1668422 1347 - 0.323682
NA SAV0889 hypothetical proteinchromosome CDS937836 171 + 0.327485
NA SAV1872 conserved hypothetical proteinchromosome CDS2014996 315 - 0.307937
NA SAV1250 DNA topoisomerase I topA homologuechromosome CDS1313526 2070 + 0.351208
NA SAV0369 truncated integrasechromosome CDS414249 255 - 0.341176
NA SAV1587 conserved hypothetical proteinchromosome CDS1697717 975 - 0.270769
NA SAV0691 putative deoxyribodipyrimidine photolyasechromosome CDS764517 1374 + 0.340611
NA SAV2344 putative 3-methyladenine DNA glycosylatechromosome CDS2468769 609 + 0.37931
NA SAV0063 hypothetical proteinchromosome CDS66591 1794 - 0.344482
NA SAV1557 probable endonuclease IVchromosome CDS1667522 891 - 0.333333
NA SAV0385 conserved hypothetical proteinchromosome CDS428288 957 - 0.376176
NA SAV1249 similar to DNA processing Smf proteinchromosome CDS1312474 873 + 0.30126
NA SAV1785 truncated transposasechromosome CDS1917398 351 + 0.299145
NA SAV1566 similar to DNA repair protein RecOchromosome CDS1678329 753 - 0.325365
NA SAV0967 similar to ATP-dependent nuclease subunit Achromosome CDS1012138 3654 + 0.333333
NA SAV2025 hypothetical proteinchromosome CDS2146129 318 - 0.327044
NA SAV1364 DNA-damage repair proteinchromosome CDS1444716 1263 + 0.335709
NA SAV1616 putative Holliday junction resolvasechromosome CDS1722170 372 - 0.322581
NA SAV2096 similar to single strand DNA binding proteinchromosome CDS2227874 396 - 0.30303
NA SAV0800 similar to bacteriophage terminase small subunitchromosome CDS878043 570 + 0.363158
NA SAV1804 truncated transposasechromosome CDS1933171 570 - 0.294737
NA SAV2213 hypothetical proteinchromosome CDS2356713 156 - 0.294872
NA SAV0492 conserved hypothetical proteinchromosome CDS546337 537 + 0.351955
NA SAV1489 hypothetical proteinchromosome CDS1603926 2163 - 0.29681
NA SAV1619 similar to deoxyribonucleasechromosome CDS1725898 2478 - 0.327684
NA SAV1499 similar to ADP-ribose pyrophosphatasechromosome CDS1614003 543 - 0.314917
NA SAV0081 hypothetical proteinchromosome CDS85546 1509 + 0.312127
NA SAV1923 truncated transposasechromosome CDS2069711 174 - 0.310345
NA SAV0289 hypothetical proteinchromosome CDS336945 393 + 0.310433
NA SAV2021 hypothetical proteinchromosome CDS2142798 1710 - 0.321637
NA SAV0740 hypothetical proteinchromosome CDS817389 879 + 0.273038
NA SAV1985 hypothetical proteinchromosome CDS2115216 921 - 0.336591
NA SAV1868 similar to A/G-specific adenine glycosylasechromosome CDS2010192 1038 - 0.340077
NA SAV1738 hypothetical proteinchromosome CDS1865422 1359 - 0.332597
NA SAV1345 similar to exonuclease SbcDchromosome CDS1418234 1122 + 0.305704
NA SAV0408 putative phage replication proteinchromosome CDS451634 1185 - 0.380591
NA SAV2048 similar to DNA mismatch repair protein MutSchromosome CDS2169030 1611 + 0.304159
SAVP006 conserved hypothetical proteinVRSAp CDS5177 705 - 0.259574
adaB SAV2547 probable methylated DNA-protein cysteine methyltransferasechromosome CDS2690511 522 - 0.396552
ccrA SAV0062 cassette chromosome recombinase Achromosome CDS65008 1350 - 0.348148
ccrB SAV0061 cassette chromosome recombinase Bchromosome CDS63358 1629 - 0.350522
coa SAV0230 staphylocoagulase precursorchromosome CDS264636 1977 + 0.34699
dinG SAV1455 probable ATP-dependent DNA helicasechromosome CDS1569440 2694 - 0.299555
dnaA SAV0001 chromosomal replication initiator proteinchromosome CDS517 1362 + 0.326725
dnaB SAV1685 chromosome replication initiation/membrane attachment proteinchromosome CDS1793686 1401 - 0.327623
dnaC SAV0016 replicative DNA helicasechromosome CDS20771 1401 + 0.382584
dnaE SAV1703 DNA polymerase III, alpha chainchromosome CDS1818861 3198 - 0.316135
dnaG SAV1562 DNA primasechromosome CDS1673123 1818 - 0.319582
dnaI SAV1684 primosomal proteinchromosome CDS1792766 921 - 0.344191
dnaN SAV0002 DNA polymerase III beta chainchromosome CDS2156 1134 + 0.328042
dnaX SAV0478 DNA polymerase III gamma and tau subunitschromosome CDS526908 1698 + 0.36278
dnlJ SAV1904 DNA ligasechromosome CDS2046290 2004 - 0.33982
gyrA SAV0006 DNA gyrase subunit Achromosome CDS7005 2670 + 0.366667
gyrB SAV0005 DNA gyrase subunit Bchromosome CDS5034 1935 + 0.369509
holB SAV0484 probable DNA polymerase III delta prime subunitchromosome CDS538933 927 + 0.307443
hu SAV1473 DNA-binding protein IIchromosome CDS1587122 273 - 0.3663
int SAV2028 similar to integrasechromosome CDS2147530 1173 + 0.332481
int SAV0392 integrase homologchromosome CDS436071 1194 - 0.328308
int SAV0847 integrasechromosome CDS917507 1050 - 0.324762
int SAV2002 integrasechromosome CDS2125073 1038 + 0.307322
mfd SAV0503 transcription-repair coupling factorchromosome CDS555464 3507 + 0.341888
mrp SAV1757 Mrp proteinchromosome CDS1886755 609 - 0.333333
mutL SAV1297 DNA mismatch repair proteinchromosome CDS1369988 2010 + 0.312438
mutS SAV1295 DNA mismatch repair proteinchromosome CDS1367357 2619 + 0.321879
mutS2 SAV1144 MutS-like proteinchromosome CDS1198424 2349 + 0.329502
nth SAV1452 endonuclease-like proteinchromosome CDS1566163 660 - 0.343939
nuc SAV1324 thermonucleasechromosome CDS1397756 534 + 0.318352
nuc SAV0815 staphylococcal nucleasechromosome CDS894264 687 + 0.342067
parC SAV1355 topoisomerase IV subunit Achromosome CDS1432654 2403 + 0.321681
parE SAV1354 topoisomerase IV subunit Bchromosome CDS1430657 1998 + 0.350851
pcrA SAV1905 ATP-depentend DNA helicasechromosome CDS2048297 2193 - 0.343365
polA SAV1690 DNA polymerase Ichromosome CDS1798490 2631 - 0.321171
polC SAV1264 DNA polymerase III alpha chain PolC-typechromosome CDS1330201 4317 + 0.348853
priA SAV1212 primosomal proteinchromosome CDS1269617 2409 + 0.347032
recA SAV1285 RecA proteinchromosome CDS1356899 1044 + 0.369732
recF SAV0004 DNA repair and genetic recombination proteinchromosome CDS3912 1113 + 0.336927
recG SAV1227 ATP-dependent DNA helicasechromosome CDS1286340 2061 + 0.337215
recN SAV1519 DNA repair proteinchromosome CDS1636782 1680 - 0.307738
recQ SAV0721 probable DNA helicasechromosome CDS794594 1782 + 0.318182
recR SAV0480 recombination proteinchromosome CDS529019 597 + 0.361809
res putative resolvaseVRSAp CDS11389 558 - 0.31362
rnhB SAV1244 RNase HIIchromosome CDS1306712 768 + 0.35026
ruvA SAV1642 holliday junction DNA helicasechromosome CDS1753741 603 - 0.334992
ruvB SAV1641 holliday junction DNA helicasechromosome CDS1752705 1005 - 0.371144
set13 SAV0428 exotoxin 13chromosome CDS473505 699 + 0.297568
ssb SAV0366 single-strand DNA-binding protein of phage phi PVLchromosome CDS412149 504 + 0.382937
tag SAV1664 DNA-3-methyladenine glycosidasechromosome CDS1773369 561 + 0.326203
tnp SAV1806 transposase homolog for IS232chromosome CDS1934771 501 - 0.309381
tnp SAV2379 transposasechromosome CDS2505347 1320 - 0.309091
tnp SAV2080 transposasechromosome CDS2210846 1320 - 0.309091
tnp SAV0036 transposase for IS-like elementchromosome CDS41782 675 - 0.343704
tnp SAV0067 transposasechromosome CDS70659 354 - 0.30226
tnp SAV0415 transposasechromosome CDS460233 1191 - 0.43157
tnp SAV1162 transposase for insertion sequence IS1181chromosome CDS1215412 1320 + 0.309091
tnp SAV1860 transposasechromosome CDS1992601 1320 + 0.309091
tnp SAV2501 transposasechromosome CDS2637221 1320 - 0.309091
tnp SAV0384 transposase for IS1181chromosome CDS426637 1320 + 0.309091
tnp SAV0027 transposase for IS-like elementchromosome CDS36436 675 - 0.343704
tnp SAV1720 transposasechromosome CDS1839628 1320 + 0.309091
tnp SAV0066 transposasechromosome CDS70170 378 - 0.328042
tnp SAV0926 transposase for IS1181chromosome CDS970190 1320 + 0.309091
tnp SAV1699 transposasechromosome CDS1813637 1320 + 0.309091
tnp SAV0630 transposase for IS1181chromosome CDS702549 1320 - 0.309091
tnpA SAV0056 transposase Achromosome CDS60026 1086 - 0.321363
tnpA SAV1659 transposase Achromosome CDS1766320 1086 - 0.321363
tnpB SAV1658 transposase Bchromosome CDS1764431 1893 - 0.338616
tnpB SAV0055 transposase Bchromosome CDS58137 1893 - 0.338616
tnpE probable transposaseVRSAp CDS8808 675 - 0.340741
tnpE probable transposaseVRSAp CDS19548 675 - 0.340741
tnpF probable transposaseVRSAp CDS15986 666 + 0.348348
tnpG probable transposaseVRSAp CDS14781 675 - 0.352593
topB SAV2254 DNA topoisomerase III topBchromosome CDS2380525 2136 - 0.331461
truncated-radC SAV1660 DNA repair protein RadC homologchromosome CDS1767524 555 - 0.313514
truncated-radC SAV0057 truncated hypothetical proteinchromosome CDS61230 318 - 0.339623
truncated-repB SAV0029 truncated replication protein for pUB110 plasmidchromosome CDS37411 795 - 0.32327
truncated-repB SAV0028 truncated replication protein for plasmidchromosome CDS37201 207 - 0.328502
truncated-res truncated resolvase ResVRSAp CDS8499 240 - 0.354167
truncated-res truncated resolvaseVRSAp CDS20260 339 - 0.353982
truncated-tnp truncated transposaseVRSAp CDS16762 333 + 0.357357
truncated-tnp truncated transposaseVRSAp CDS19113 285 - 0.361403
truncated-tnp SAV1195 truncated transposasechromosome CDS1251541 213 - 0.309859
ung SAV0581 uracil-DNA glycosylasechromosome CDS656605 657 + 0.354642
uvrA SAV0759 exinuclease ABC subunit Achromosome CDS839127 2847 + 0.355111
uvrB SAV0758 exinuclease ABC subunit Bchromosome CDS837128 1992 + 0.350402
uvrC SAV1146 excinuclease ABC subunit Cchromosome CDS1201583 1782 + 0.331089
xerC SAV1252 site-specific recombinase XerC homologuechromosome CDS1317476 897 + 0.322185
xerD SAV1497 site-specific recombinasechromosome CDS1612513 888 - 0.333333