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2024-05-19 10:26:13

Gene list

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COG category: Replication, recombination and repair
Organism: Clostridium perfringens str. 13, 13

Number of genes found: 166

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Clostridium perfringens str. 13, 13
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
CPE0008 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS9369 252 + 0.313492
CPE0126 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS165999 327 + 0.204893
CPE0139 probable transposaseSubName: Full=Probable transposase; chromosome CDS179861 471 + 0.29087
CPE0140 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS180609 1770 + 0.266102
CPE0164 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS210726 459 + 0.27451
CPE0211 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS276250 2199 + 0.268304
CPE0240 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS312795 1431 + 0.274633
CPE0265 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS335081 678 - 0.292035
CPE0287 probable phage-related single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS366883 345 + 0.298551
CPE0290 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS372789 306 + 0.281046
CPE0308 MutS-like proteinSubName: Full=MutS-like protein; chromosome CDS391401 1566 + 0.265006
CPE0342 probable methylated-DNA-protein-cystein methyltransferaseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS433417 483 + 0.304348
CPE0357 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS454367 555 + 0.284685
CPE0368 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS472441 900 + 0.252222
CPE0369 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS473520 3906 + 0.195853
CPE0402 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS516217 612 + 0.281046
CPE0410 probable transposaseSubName: Full=Probable transposase; chromosome CDS525713 1200 + 0.259167
CPE0425 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS545510 855 - 0.245614
CPE0466 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS588224 414 + 0.236715
CPE0508 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS631476 2244 + 0.237968
CPE0536 probable transposaseSubName: Full=Probable transposase; chromosome CDS666446 927 + 0.259978
CPE0537 probable transposaseSubName: Full=Probable transposase; chromosome CDS667372 273 + 0.260073
CPE0594 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS742291 474 + 0.28481
CPE0666 probable transposaseSubName: Full=Probable transposase; chromosome CDS831185 273 + 0.285714
CPE0667 probable transposaseSubName: Full=Probable transposase; chromosome CDS831468 354 + 0.316384
CPE0668 probable transposaseSubName: Full=Probable transposase; chromosome CDS831763 861 + 0.29849
CPE0671 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS837243 561 - 0.278075
CPE0674 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS839807 1086 + 0.244015
CPE0749 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS928856 1014 + 0.229783
CPE0755 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS934078 495 + 0.270707
CPE0767 probable transposase (IS1136)SubName: Full=Probable transposase (IS1136); chromosome CDS947568 1200 - 0.259167
CPE0788 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS972580 504 + 0.248016
CPE0796 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS979635 516 + 0.29845
CPE0799 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS982027 1245 + 0.268273
CPE0800 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS983406 528 - 0.229167
CPE0829 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1012767 942 + 0.259023
CPE0866 probable alpha-N-acetylglucosaminidaseSubName: Full=Probable alpha-N-acetylglucosaminidase; chromosome CDS1061148 6315 + 0.314806
CPE0878 probable transposaseSubName: Full=Probable transposase; chromosome CDS1078174 1173 - 0.259165
CPE0888 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1091766 651 + 0.250384
CPE0976 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1176634 354 + 0.231638
CPE1079 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1283238 711 - 0.284107
CPE1095 probable integrase/recombinaseSubName: Full=Probable integrase/recombinase; chromosome CDS1298199 1017 + 0.271386
CPE1117 phage-related conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1312983 585 + 0.288889
CPE1122 probable phage-related head proteinSubName: Full=Probable phage-related head protein; chromosome CDS1317279 1137 + 0.288478
CPE1171 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1369260 384 - 0.239583
CPE1197 probable helicase proteinSubName: Full=Probable helicase protein; chromosome CDS1398012 2346 - 0.281756
CPE1250 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1457655 1218 - 0.208539
CPE1261 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1472753 621 - 0.26409
CPE1274 probable lysine-N-methylaseSubName: Full=Probable lysine-N-methylase; chromosome CDS1493787 1149 - 0.237598
CPE1277 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1497946 342 - 0.269006
CPE1318 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1560366 630 - 0.309524
CPE1330 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1571103 351 - 0.273504
CPE1353 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1597424 405 - 0.239506
CPE1396 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS1647504 1587 + 0.31317
CPE1401 probable DNA polymerase III epsilon chainSubName: Full=Probable DNA polymerase III epsilon chain; chromosome CDS1652165 909 - 0.289329
CPE1404 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1657055 1152 + 0.296007
CPE1444 conserved hypothetical proteinRecName: Full=UPF0213 protein CPE1444; chromosome CDS1701724 282 - 0.258865
CPE1479 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1734415 636 - 0.278302
CPE1516 probable RNA helicaseSubName: Full=Probable RNA helicase; chromosome CDS1773697 1224 - 0.280229
CPE1527 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1789308 795 - 0.251572
CPE1554 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1822494 846 - 0.262411
CPE1625 SWI/SNF family helicaseSubName: Full=SWI/SNF family helicase; chromosome CDS1896218 3255 - 0.274962
CPE1649 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1922655 801 - 0.263421
CPE1666 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1941144 615 + 0.276423
CPE1667 probable single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1941795 330 - 0.269697
CPE1705 conserved hypothetical proteinRecName: Full=UPF0102 protein CPE1705; chromosome CDS1985322 369 + 0.249322
CPE1730 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2006399 558 - 0.310036
CPE1745 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS2021654 2196 - 0.276412
CPE1778 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS2056794 414 - 0.335749
CPE1787 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2066029 1227 - 0.303178
CPE1808 probable integrase/recombinaseSubName: Full=Probable integrase/recombinase; chromosome CDS2088169 873 - 0.289805
CPE1810 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2089979 531 - 0.288136
CPE1848 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2119280 1128 - 0.325355
CPE1887 probable transposaseSubName: Full=Probable transposase; chromosome CDS2169225 1155 - 0.300433
CPE1888 probable transposaseSubName: Full=Probable transposase; chromosome CDS2170390 372 - 0.284946
CPE1898 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2178625 555 - 0.286486
CPE1910 probable single stranded binding proteinSubName: Full=Probable single stranded binding protein; chromosome CDS2188936 657 - 0.278539
CPE1940 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2222518 855 - 0.265497
CPE1990 probable serine/threonine protein kinaseSubName: Full=Probable serine/threonine protein kinase; chromosome CDS2279929 597 - 0.259631
CPE2043 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2334511 1047 - 0.256925
CPE2102 probable ATP-dependent RNA helicaseSubName: Full=Probable ATP-dependent RNA helicase; chromosome CDS2409786 1758 - 0.28157
CPE2154 probable DNA polymerase III epsilon chainSubName: Full=Probable DNA polymerase III epsilon chain; chromosome CDS2465469 903 - 0.262458
CPE2156 MutS-related proteinSubName: Full=MutS-related protein; chromosome CDS2468553 1788 - 0.274049
CPE2160 probable phosphoesteraseSubName: Full=Probable phosphoesterase; chromosome CDS2476240 1143 - 0.273841
CPE2233 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2555119 633 + 0.263823
CPE2259 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2594060 1998 - 0.305305
CPE2260 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS2596086 2256 - 0.296099
CPE2293 probable 8-oxoguanine DNA glycosylaseSubName: Full=Probable 8-oxoguanine DNA glycosylase; chromosome CDS2637545 939 - 0.299255
CPE2307 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2652430 411 - 0.250608
CPE2320 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2667702 405 + 0.264198
CPE2330 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2682169 1293 + 0.281516
CPE2352 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2711502 963 + 0.235722
CPE2518 conserved hypothetical proteinRecName: Full=Ribonuclease M5; EC=3.1.26.8; AltName: Full=RNase M5; AltName: Full=Ribosomal RNA terminal maturase M5; chromosome CDS2882651 549 - 0.331512
CPE2520 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2884602 771 - 0.291829
CPE2555 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2925903 444 - 0.288288
CPE2576 3-methyladenine DNA glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS2952091 618 - 0.307443
CPE2594 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2972325 1032 - 0.300388
CPE2621 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2996378 300 - 0.34
CPE2641 probable phage-related single-strand DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS3015572 453 - 0.362031
PCP04 probable transposaseSubName: Full=Probable transposase; pCP13 CDS3773 252 + 0.238095
PCP05 probable transposaseSubName: Full=Probable transposase; pCP13 CDS4040 183 + 0.289617
PCP06 probable transposase pCP13 CDS4588 159 + 0.251572
PCP10 probable transposaseSubName: Full=Probable transposase; pCP13 CDS8779 234 + 0.320513
PCP11 probable transposaseSubName: Full=Probable transposase; pCP13 CDS9127 240 + 0.245833
PCP12 conserved hypothetical proteinRecName: Full=Uncharacterized protein PCP12; pCP13 CDS9488 486 - 0.201646
PCP32 probable resolvaseSubName: Full=Probable resolvase; pCP13 CDS23328 186 + 0.258065
PCP35 conserved hypothetical proteinSubName: Full=Uncharacterized protein; pCP13 CDS24604 1362 - 0.267254
addA ATP-dependent deoxyribonuclease chain ARecName: Full=ATP-dependent helicase/nuclease subunit A; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddA; chromosome CDS29582 3807 + 0.290517
addB ATP-dependent deoxyribonuclease chain BRecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddB; chromosome CDS26116 3477 + 0.281565
comEA ComE operon proteinSubName: Full=ComE operon protein; chromosome CDS2432199 783 - 0.269476
dbh probable DNA binding proteinSubName: Full=Probable DNA binding protein; chromosome CDS2836813 276 - 0.333333
deaD probable ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS1056913 1437 + 0.298539
dinP DNA-damage-inducible protein PRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS1835113 1080 - 0.300926
dnaA chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS410 1374 + 0.299127
dnaC probable chromosome replication initiation proteinSubName: Full=Probable chromosome replication initiation protein; chromosome CDS2989175 996 + 0.25502
dnaC replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS3007583 1335 - 0.344569
dnaD probable chromosome replication initiation proteinSubName: Full=Probable chromosome replication initiation protein; chromosome CDS2988177 1002 + 0.297405
dnaE DNA polymerase III, subunit alphaSubName: Full=DNA polymerase III, subunit alpha; chromosome CDS457313 3579 + 0.331936
dnaG DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS2299209 1788 - 0.287472
dnaN DNA-directed DNA polymerase III beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS2078 1101 + 0.279746
dnaX DNA polymerase III gamma and tau subunitsSubName: Full=DNA polymerase III gamma and tau subunits; chromosome CDS58015 1644 + 0.303528
exoA 3'-exo-deoxyribonucleaseSubName: Full=3-exo-deoxyribonuclease; chromosome CDS1371494 753 - 0.305445
gyrA DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS7100 2292 + 0.316318
gyrB DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS5162 1917 + 0.336463
holB DNA polymerase III delta' subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS2796703 924 - 0.268398
mfd transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS2842370 3489 - 0.29808
mutL DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1353763 2025 + 0.289383
mutS DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1351007 2730 + 0.286813
mutS2 DNA mismatch repair proteinRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS2157777 2361 - 0.320627
parC DNA topoisomerase IV subunit ASubName: Full=DNA topoisomerase IV subunit A; chromosome CDS2365761 2940 - 0.306803
parE DNA topoisomerase IV subunit BSubName: Full=DNA topoisomerase IV subunit B; chromosome CDS2368714 1953 - 0.3149
pcrA probable ATP-dependent DNA helicaseSubName: Full=Probable ATP-dependent DNA helicase; chromosome CDS541903 2613 + 0.285878
pcrA ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS1411020 1995 - 0.261654
polA DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS2283149 2601 - 0.278739
polC DNA polymerase III alpha subunitRecName: Full=DNA polymerase III PolC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS1966403 4350 - 0.314483
radC DNA repair protein RadCSubName: Full=DNA repair protein RadC; pCP13 CDS16323 438 + 0.273973
radC DNA repair proteinRecName: Full=UPF0758 protein CPE2144; chromosome CDS2455583 684 - 0.312865
recA recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1948140 1059 - 0.345609
recD exodeoxyribonuclease V alpha subunitSubName: Full=Exodeoxyribonuclease V alpha subunit; chromosome CDS2494907 2235 - 0.295302
recF DNA repair and genetic recombination proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS3566 1086 + 0.241252
recG ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS2007021 2073 - 0.283165
recJ probable single-strand DNA-specific exonucleaseSubName: Full=Probable single-strand DNA-specific exonuclease; chromosome CDS2361959 1779 - 0.302979
recN DNA repair and genetic recombination proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2093294 1698 - 0.270907
recO probable DNA repair proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2307726 678 - 0.280236
recQ ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS1576633 1779 - 0.278808
recQ ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS433948 2175 + 0.294253
recR DNA repair and genetic recombination proteinRecName: Full=Recombination protein RecR; chromosome CDS60206 597 + 0.324958
resP resolvaseRecName: Full=Resolvase; pCP13 CDS11317 570 + 0.312281
rnh ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1985691 819 - 0.272283
ruvA holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS2231145 606 - 0.29703
ruvB holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS2230091 1041 - 0.329491
sbcC probable exonucleaseSubName: Full=Probable exonuclease; chromosome CDS283514 3528 + 0.27551
sbcD probable exonucleaseSubName: Full=Probable exonuclease; chromosome CDS282313 1224 + 0.310458
smf Smf protein DNA processing chain ASubName: Full=Smf protein DNA processing chain A; chromosome CDS1982586 1083 - 0.276085
splB spore photoproduct lyaseSubName: Full=Spore photoproduct lyase; chromosome CDS899303 1029 + 0.270165
spoIIIAB stage III sporulation protein ABSubName: Full=Stage III sporulation protein AB; chromosome CDS2106937 516 - 0.263566
topA type I topoisomeaseRecName: Full=DNA topoisomerase; EC=5.99.1.2; pCP13 CDS35027 2112 - 0.26089
topA DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1980439 2103 - 0.305754
topB DNA topoisomerase III-like proteinSubName: Full=DNA topoisomerase III-like protein; chromosome CDS2269532 2163 - 0.306056
topB DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS1761676 2187 - 0.301783
uvrA excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS441396 2820 + 0.324468
uvrB excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS384378 1980 + 0.320707
uvrC excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS447848 1863 + 0.317767
xerD probable integrase/recombinaseSubName: Full=Probable integrase/recombinase; chromosome CDS1361032 1353 - 0.255728
xseA exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2100212 1203 - 0.276808
xseB exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS2099966 228 - 0.29386