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2024-05-06 11:48:36

Gene list

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COG category: Replication, recombination and repair
Organism: Clostridium perfringens str. 13, 13

Number of genes found: 166

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Clostridium perfringens str. 13, 13
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
CPE0008 hypothetical proteinchromosome CDS9369 252 + 0.313492
CPE0126 hypothetical proteinchromosome CDS165999 327 + 0.204893
CPE0139 probable transposasechromosome CDS179861 471 + 0.29087
CPE0140 conserved hypothetical proteinchromosome CDS180609 1770 + 0.266102
CPE0164 conserved hypothetical proteinchromosome CDS210726 459 + 0.27451
CPE0211 conserved hypothetical proteinchromosome CDS276250 2199 + 0.268304
CPE0240 hypothetical proteinchromosome CDS312795 1431 + 0.274633
CPE0265 uracil-DNA glycosylasechromosome CDS335081 678 - 0.292035
CPE0287 probable phage-related single-strand DNA binding proteinchromosome CDS366883 345 + 0.298551
CPE0290 hypothetical proteinchromosome CDS372789 306 + 0.281046
CPE0308 MutS-like proteinchromosome CDS391401 1566 + 0.265006
CPE0342 probable methylated-DNA-protein-cystein methyltransferasechromosome CDS433417 483 + 0.304348
CPE0357 hypothetical proteinchromosome CDS454367 555 + 0.284685
CPE0368 hypothetical proteinchromosome CDS472441 900 + 0.252222
CPE0369 hypothetical proteinchromosome CDS473520 3906 + 0.195853
CPE0402 hypothetical proteinchromosome CDS516217 612 + 0.281046
CPE0410 probable transposasechromosome CDS525713 1200 + 0.259167
CPE0425 conserved hypothetical proteinchromosome CDS545510 855 - 0.245614
CPE0466 hypothetical proteinchromosome CDS588224 414 + 0.236715
CPE0508 hypothetical proteinchromosome CDS631476 2244 + 0.237968
CPE0536 probable transposasechromosome CDS666446 927 + 0.259978
CPE0537 probable transposasechromosome CDS667372 273 + 0.260073
CPE0594 hypothetical proteinchromosome CDS742291 474 + 0.28481
CPE0666 probable transposasechromosome CDS831185 273 + 0.285714
CPE0667 probable transposasechromosome CDS831468 354 + 0.316384
CPE0668 probable transposasechromosome CDS831763 861 + 0.29849
CPE0671 hypothetical proteinchromosome CDS837243 561 - 0.278075
CPE0674 conserved hypothetical proteinchromosome CDS839807 1086 + 0.244015
CPE0749 hypothetical proteinchromosome CDS928856 1014 + 0.229783
CPE0755 conserved hypothetical proteinchromosome CDS934078 495 + 0.270707
CPE0767 probable transposase (IS1136)chromosome CDS947568 1200 - 0.259167
CPE0788 hypothetical proteinchromosome CDS972580 504 + 0.248016
CPE0796 MutT/nudix family proteinchromosome CDS979635 516 + 0.29845
CPE0799 hypothetical proteinchromosome CDS982027 1245 + 0.268273
CPE0800 hypothetical proteinchromosome CDS983406 528 - 0.229167
CPE0829 hypothetical proteinchromosome CDS1012767 942 + 0.259023
CPE0866 probable alpha-N-acetylglucosaminidasechromosome CDS1061148 6315 + 0.314806
CPE0878 probable transposasechromosome CDS1078174 1173 - 0.259165
CPE0888 conserved hypothetical proteinchromosome CDS1091766 651 + 0.250384
CPE0976 hypothetical proteinchromosome CDS1176634 354 + 0.231638
CPE1079 conserved hypothetical proteinchromosome CDS1283238 711 - 0.284107
CPE1095 probable integrase/recombinasechromosome CDS1298199 1017 + 0.271386
CPE1117 phage-related conserved hypothetical proteinchromosome CDS1312983 585 + 0.288889
CPE1122 probable phage-related head proteinchromosome CDS1317279 1137 + 0.288478
CPE1171 hypothetical proteinchromosome CDS1369260 384 - 0.239583
CPE1197 probable helicase proteinchromosome CDS1398012 2346 - 0.281756
CPE1250 hypothetical proteinchromosome CDS1457655 1218 - 0.208539
CPE1261 hypothetical proteinchromosome CDS1472753 621 - 0.26409
CPE1274 probable lysine-N-methylasechromosome CDS1493787 1149 - 0.237598
CPE1277 hypothetical proteinchromosome CDS1497946 342 - 0.269006
CPE1318 endonuclease IIIchromosome CDS1560366 630 - 0.309524
CPE1330 hypothetical proteinchromosome CDS1571103 351 - 0.273504
CPE1353 hypothetical proteinchromosome CDS1597424 405 - 0.239506
CPE1396 ATP-dependent RNA helicasechromosome CDS1647504 1587 + 0.31317
CPE1401 probable DNA polymerase III epsilon chainchromosome CDS1652165 909 - 0.289329
CPE1404 conserved hypothetical proteinchromosome CDS1657055 1152 + 0.296007
CPE1444 conserved hypothetical proteinchromosome CDS1701724 282 - 0.258865
CPE1479 hypothetical proteinchromosome CDS1734415 636 - 0.278302
CPE1516 probable RNA helicasechromosome CDS1773697 1224 - 0.280229
CPE1527 hypothetical proteinchromosome CDS1789308 795 - 0.251572
CPE1554 hypothetical proteinchromosome CDS1822494 846 - 0.262411
CPE1625 SWI/SNF family helicasechromosome CDS1896218 3255 - 0.274962
CPE1649 hypothetical proteinchromosome CDS1922655 801 - 0.263421
CPE1666 hypothetical proteinchromosome CDS1941144 615 + 0.276423
CPE1667 probable single-strand binding proteinchromosome CDS1941795 330 - 0.269697
CPE1705 conserved hypothetical proteinchromosome CDS1985322 369 + 0.249322
CPE1730 conserved hypothetical proteinchromosome CDS2006399 558 - 0.310036
CPE1745 primosomal protein N'chromosome CDS2021654 2196 - 0.276412
CPE1778 conserved hypothetical proteinchromosome CDS2056794 414 - 0.335749
CPE1787 conserved hypothetical proteinchromosome CDS2066029 1227 - 0.303178
CPE1808 probable integrase/recombinasechromosome CDS2088169 873 - 0.289805
CPE1810 conserved hypothetical proteinchromosome CDS2089979 531 - 0.288136
CPE1848 conserved hypothetical proteinchromosome CDS2119280 1128 - 0.325355
CPE1887 probable transposasechromosome CDS2169225 1155 - 0.300433
CPE1888 probable transposasechromosome CDS2170390 372 - 0.284946
CPE1898 conserved hypothetical proteinchromosome CDS2178625 555 - 0.286486
CPE1910 probable single stranded binding proteinchromosome CDS2188936 657 - 0.278539
CPE1940 hypothetical proteinchromosome CDS2222518 855 - 0.265497
CPE1990 probable serine/threonine protein kinasechromosome CDS2279929 597 - 0.259631
CPE2043 conserved hypothetical proteinchromosome CDS2334511 1047 - 0.256925
CPE2102 probable ATP-dependent RNA helicasechromosome CDS2409786 1758 - 0.28157
CPE2154 probable DNA polymerase III epsilon chainchromosome CDS2465469 903 - 0.262458
CPE2156 MutS-related proteinchromosome CDS2468553 1788 - 0.274049
CPE2160 probable phosphoesterasechromosome CDS2476240 1143 - 0.273841
CPE2233 hypothetical proteinchromosome CDS2555119 633 + 0.263823
CPE2259 DNA ligasechromosome CDS2594060 1998 - 0.305305
CPE2260 ATP-dependent DNA helicasechromosome CDS2596086 2256 - 0.296099
CPE2293 probable 8-oxoguanine DNA glycosylasechromosome CDS2637545 939 - 0.299255
CPE2307 hypothetical proteinchromosome CDS2652430 411 - 0.250608
CPE2320 hypothetical proteinchromosome CDS2667702 405 + 0.264198
CPE2330 conserved hypothetical proteinchromosome CDS2682169 1293 + 0.281516
CPE2352 hypothetical proteinchromosome CDS2711502 963 + 0.235722
CPE2518 conserved hypothetical proteinchromosome CDS2882651 549 - 0.331512
CPE2520 conserved hypothetical proteinchromosome CDS2884602 771 - 0.291829
CPE2555 hypothetical proteinchromosome CDS2925903 444 - 0.288288
CPE2576 3-methyladenine DNA glycosylasechromosome CDS2952091 618 - 0.307443
CPE2594 hypothetical proteinchromosome CDS2972325 1032 - 0.300388
CPE2621 hypothetical proteinchromosome CDS2996378 300 - 0.34
CPE2641 probable phage-related single-strand DNA-binding proteinchromosome CDS3015572 453 - 0.362031
PCP04 probable transposasepCP13 CDS3773 252 + 0.238095
PCP05 probable transposasepCP13 CDS4040 183 + 0.289617
PCP06 probable transposasepCP13 CDS4588 159 + 0.251572
PCP10 probable transposasepCP13 CDS8779 234 + 0.320513
PCP11 probable transposasepCP13 CDS9127 240 + 0.245833
PCP12 conserved hypothetical proteinpCP13 CDS9488 486 - 0.201646
PCP32 probable resolvasepCP13 CDS23328 186 + 0.258065
PCP35 conserved hypothetical proteinpCP13 CDS24604 1362 - 0.267254
addA ATP-dependent deoxyribonuclease chain Achromosome CDS29582 3807 + 0.290517
addB ATP-dependent deoxyribonuclease chain Bchromosome CDS26116 3477 + 0.281565
comEA ComE operon proteinchromosome CDS2432199 783 - 0.269476
dbh probable DNA binding proteinchromosome CDS2836813 276 - 0.333333
deaD probable ATP-dependent RNA helicasechromosome CDS1056913 1437 + 0.298539
dinP DNA-damage-inducible protein Pchromosome CDS1835113 1080 - 0.300926
dnaA chromosomal replication initiator proteinchromosome CDS410 1374 + 0.299127
dnaC replicative DNA helicasechromosome CDS3007583 1335 - 0.344569
dnaC probable chromosome replication initiation proteinchromosome CDS2989175 996 + 0.25502
dnaD probable chromosome replication initiation proteinchromosome CDS2988177 1002 + 0.297405
dnaE DNA polymerase III, subunit alphachromosome CDS457313 3579 + 0.331936
dnaG DNA primasechromosome CDS2299209 1788 - 0.287472
dnaN DNA-directed DNA polymerase III beta chainchromosome CDS2078 1101 + 0.279746
dnaX DNA polymerase III gamma and tau subunitschromosome CDS58015 1644 + 0.303528
exoA 3'-exo-deoxyribonucleasechromosome CDS1371494 753 - 0.305445
gyrA DNA gyrase subunit Achromosome CDS7100 2292 + 0.316318
gyrB DNA gyrase subunit Bchromosome CDS5162 1917 + 0.336463
holB DNA polymerase III delta' subunitchromosome CDS2796703 924 - 0.268398
mfd transcription-repair coupling factorchromosome CDS2842370 3489 - 0.29808
mutL DNA mismatch repair proteinchromosome CDS1353763 2025 + 0.289383
mutS DNA mismatch repair proteinchromosome CDS1351007 2730 + 0.286813
mutS2 DNA mismatch repair proteinchromosome CDS2157777 2361 - 0.320627
parC DNA topoisomerase IV subunit Achromosome CDS2365761 2940 - 0.306803
parE DNA topoisomerase IV subunit Bchromosome CDS2368714 1953 - 0.3149
pcrA ATP-dependent helicasechromosome CDS1411020 1995 - 0.261654
pcrA probable ATP-dependent DNA helicasechromosome CDS541903 2613 + 0.285878
polA DNA polymerase Ichromosome CDS2283149 2601 - 0.278739
polC DNA polymerase III alpha subunitchromosome CDS1966403 4350 - 0.314483
radC DNA repair protein RadCpCP13 CDS16323 438 + 0.273973
radC DNA repair proteinchromosome CDS2455583 684 - 0.312865
recA recA proteinchromosome CDS1948140 1059 - 0.345609
recD exodeoxyribonuclease V alpha subunitchromosome CDS2494907 2235 - 0.295302
recF DNA repair and genetic recombination proteinchromosome CDS3566 1086 + 0.241252
recG ATP-dependent DNA helicasechromosome CDS2007021 2073 - 0.283165
recJ probable single-strand DNA-specific exonucleasechromosome CDS2361959 1779 - 0.302979
recN DNA repair and genetic recombination proteinchromosome CDS2093294 1698 - 0.270907
recO probable DNA repair proteinchromosome CDS2307726 678 - 0.280236
recQ ATP-dependent DNA helicasechromosome CDS1576633 1779 - 0.278808
recQ ATP-dependent DNA helicasechromosome CDS433948 2175 + 0.294253
recR DNA repair and genetic recombination proteinchromosome CDS60206 597 + 0.324958
resP resolvasepCP13 CDS11317 570 + 0.312281
rnh ribonuclease HIIchromosome CDS1985691 819 - 0.272283
ruvA holliday junction DNA helicasechromosome CDS2231145 606 - 0.29703
ruvB holliday junction DNA helicasechromosome CDS2230091 1041 - 0.329491
sbcC probable exonucleasechromosome CDS283514 3528 + 0.27551
sbcD probable exonucleasechromosome CDS282313 1224 + 0.310458
smf Smf protein DNA processing chain Achromosome CDS1982586 1083 - 0.276085
splB spore photoproduct lyasechromosome CDS899303 1029 + 0.270165
spoIIIAB stage III sporulation protein ABchromosome CDS2106937 516 - 0.263566
topA DNA topoisomerase Ichromosome CDS1980439 2103 - 0.305754
topA type I topoisomeasepCP13 CDS35027 2112 - 0.26089
topB DNA topoisomerase IIIchromosome CDS1761676 2187 - 0.301783
topB DNA topoisomerase III-like proteinchromosome CDS2269532 2163 - 0.306056
uvrA excinuclease ABC subunit Achromosome CDS441396 2820 + 0.324468
uvrB excinuclease ABC subunit Bchromosome CDS384378 1980 + 0.320707
uvrC excinuclease ABC subunit Cchromosome CDS447848 1863 + 0.317767
xerD probable integrase/recombinasechromosome CDS1361032 1353 - 0.255728
xseA exodeoxyribonuclease VII large subunitchromosome CDS2100212 1203 - 0.276808
xseB exodeoxyribonuclease VII small subunitchromosome CDS2099966 228 - 0.29386