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2024-05-03 05:41:57

Gene list

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COG category: Replication, recombination and repair
Organism: Staphylococcus saprophyticus subsp. saprophyticus, ATCC 15305

Number of genes found: 131

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Staphylococcus saprophyticus subsp. saprophyticus, ATCC 15305
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSP0897 putative exonucleasechromosome CDS927780 555 - 0.345946
NA SSP1076 putative formamidopyrimidine-DNA glycosylasechromosome CDS1122866 885 + 0.336723
NA SSP1543 ATP-dependent DNA helicasechromosome CDS1608416 2046 - 0.346041
NA SSP1304 putative 5'-3' exonucleasechromosome CDS1351032 882 + 0.328798
NA SSP2276 recombinational DNA repair proteinchromosome CDS2355624 597 - 0.368509
NA SSP0038 hypothetical proteinchromosome CDS44914 1791 - 0.374093
NA SSP0990 putative truncated transposasechromosome CDS1021884 240 - 0.341667
NA SSP2134 uracil-DNA glycosylasechromosome CDS2199331 657 - 0.374429
NA SSP1518 DNA topoisomerase IAchromosome CDS1577112 2067 - 0.344461
NA SSP0028 putative DNA modification methylasechromosome CDS36942 780 + 0.280769
NA SSP1522 ribonuclease HIIchromosome CDS1582764 771 - 0.329442
NA SSP2265 putative deoxyribonucleasechromosome CDS2340290 774 - 0.379845
NA SSP0005 DNA gyrase subunit Bchromosome CDS5173 1926 + 0.372793
NA SSP1431 truncated transposasechromosome CDS1482916 699 + 0.337625
NA SSP0903 putative truncated transposasechromosome CDS932089 621 + 0.257649
NA SSP1123 putative single-strand DNA-specific exonucleasechromosome CDS1169072 2280 + 0.324561
NA SSP0035 cassette chromosome recombinase Bchromosome CDS41416 1629 - 0.343769
NA SSP1998 ATP-dependent DNA helicasechromosome CDS2064213 1779 - 0.33783
NA SSP1480 RecA recombinasechromosome CDS1532055 1050 - 0.38
NA SSP1265 putative ATP-dependent DNA helicasechromosome CDS1306775 1380 + 0.315942
NA SSP1641 transposase IS431chromosome CDS1706278 675 - 0.348148
NA SSP1642 probable truncated integrasechromosome CDS1707084 729 + 0.289438
NA SSP0925 putative A G-specific DNA glycosylasechromosome CDS950551 1047 + 0.322827
NA SSP0886 ATP-dependent DNA helicasechromosome CDS912464 2217 + 0.345963
NA SSP1053 putative adenine-specific DNA methylasechromosome CDS1091895 948 + 0.337553
NA SSP0043 hypothetical proteinchromosome CDS53649 1101 + 0.35604
NA SSP1976 hypothetical proteinchromosome CDS2040767 894 - 0.298658
NA SSP1412 putative exonucleasechromosome CDS1464168 1131 - 0.293546
NA SSP0901 putative truncated transposasechromosome CDS931303 114 + 0.219298
NA SSP1958 excinuclease ABC subunit Achromosome CDS2016780 2838 - 0.368217
NA SSP1235 DNA repair proteinchromosome CDS1273958 1683 + 0.318479
NA SSP1171 conserved hypothetical proteinchromosome CDS1215289 975 + 0.272821
NA SSP0896 putative nucleotidyltransferase DNA polymerase involved in DNA repairchromosome CDS926648 1071 + 0.351074
NA SSP0802 putative ATP-dependent RNA helicasechromosome CDS828784 1521 + 0.364234
NA SSP0004 DNA repair and genetic recombination proteinchromosome CDS4036 1116 + 0.342294
NA SSP0580 putative truncated transposasechromosome CDS619129 255 + 0.27451
NA SSP1142 ATP-dependent exonuclease V alpha subunitchromosome CDS1188933 2385 + 0.329979
NA SSP1118 Holliday junction DNA helicasechromosome CDS1162757 1005 + 0.362189
NA SSP1605 putative transposasechromosome CDS1676693 909 - 0.277228
NA SSP0002 DNA polymerase III beta subunitchromosome CDS2124 1131 + 0.33687
NA SSP0989 transposasechromosome CDS1021072 702 - 0.2849
NA SSP1933 hypothetical proteinchromosome CDS1995297 507 - 0.35503
NA SSP0039 hypothetical proteinchromosome CDS46830 1428 - 0.257003
NA SSP0001 chromosomal replication initiator proteinchromosome CDS509 1368 + 0.334064
NA SSP0042 hypothetical proteinchromosome CDS51947 1476 + 0.275068
NA SSP1403 topoisomerase IV subunit Achromosome CDS1449340 2403 - 0.342072
NA SSP0040 hypothetical proteinchromosome CDS48684 1194 + 0.262144
NA SSP1611 transposase IS431chromosome CDS1680292 675 - 0.340741
NA SSP1255 site-specific recombinasechromosome CDS1298187 888 + 0.324324
NA SSP2372 single-strand DNA-binding proteinchromosome CDS2438862 513 - 0.364522
NA SSP0955 putative metallophosphoesterasechromosome CDS988177 1185 + 0.311392
NA SSP0581 putative truncated transposasechromosome CDS619311 234 + 0.25641
NA SSP0902 putative truncated transposasechromosome CDS931535 306 + 0.326797
NA SSP1117 Holliday junction DNA helicasechromosome CDS1162121 603 + 0.353234
NA SSP1516 putative integrase recombinasechromosome CDS1574641 891 - 0.340067
NA SSP1075 DNA polymerase Ichromosome CDS1120220 2631 + 0.330293
NA SSP1132 conserved hypothetical proteinchromosome CDS1180438 1284 - 0.359813
NA SSP0787 putative single strand DNA binding proteinchromosome CDS814904 420 + 0.304762
NA SSP2097 putative recombinasechromosome CDS2166145 552 - 0.300725
NA SSP1809 putative ATP-dependent nuclease subunit Bchromosome CDS1888531 3462 - 0.3368
NA SSP2253 transcription-repair coupling factorchromosome CDS2327349 3513 - 0.347282
NA SSP1559 primosomal proteinchromosome CDS1625627 2409 - 0.342051
NA SSP1423 transposasechromosome CDS1474035 999 + 0.332332
NA SSP1299 putative N6-adenine-specific DNA methylasechromosome CDS1342984 1134 + 0.364198
NA SSP1080 chromosome replication initiation membrane attachment proteinchromosome CDS1126413 1374 + 0.311499
NA SSP1199 endonuclease IVchromosome CDS1244145 891 + 0.30752
NA SSP1105 putative DNA repair proteinchromosome CDS1155080 681 + 0.306902
NA SSP1064 DNA polymerase III alpha chainchromosome CDS1103048 3204 + 0.326155
NA SSP1108 hypothetical proteinchromosome CDS1156804 459 + 0.324619
NA SSP1649 excinuclease ABC subunit Cchromosome CDS1713990 1788 - 0.33557
NA SSP1232 exodeoxyribonuclease small subunitchromosome CDS1271743 246 + 0.288618
NA SSP0654 hypothetical proteinchromosome CDS689709 177 - 0.276836
NA SSP0006 DNA gyrase subunit Achromosome CDS7134 2694 + 0.380104
NA SSP2111 putative endonuclease IIIchromosome CDS2177863 645 - 0.328682
NA SSP1519 DprA SMF protein putative DNA processing factorchromosome CDS1579381 876 - 0.326484
NA SSP1388 putative DNA-damage repair proteinchromosome CDS1431483 1263 - 0.330166
NA SSP0322 putative 6-O-methylguanine DNA methyltransferasechromosome CDS352256 534 + 0.357678
NA SSP1291 putative chromosome replication initiation proteinchromosome CDS1335873 687 + 0.312955
NA SSP1881 hypothetical proteinchromosome CDS1957677 498 - 0.279116
NA SSP1292 putative endonucleasechromosome CDS1336549 660 + 0.339394
NA SSP0561 putative 3-methylpurine glycosylasechromosome CDS596708 612 - 0.385621
NA SSP1404 topoisomerase IV subunit Bchromosome CDS1451739 2001 - 0.347326
NA SSP2204 putative kinasechromosome CDS2261531 489 - 0.333333
NA SSP1624 excinuclease ATPase subunitchromosome CDS1690018 2262 - 0.314324
NA SSP1273 bacterial nucleoid DNA-binding protein HUchromosome CDS1317112 273 + 0.373626
NA SSP1081 primosomal proteinchromosome CDS1127783 924 + 0.343074
NA SSP0831 putative DNA mismatch repair proteinchromosome CDS862317 1647 - 0.301761
NA SSP0289 putative DNA-3-methyladenine glycosidasechromosome CDS314030 666 - 0.364865
NA SSP0074 conserved hypothetical proteinchromosome CDS85137 3225 + 0.299535
NA SSP1670 putative truncated excinuclease ABC subunit Achromosome CDS1735694 798 + 0.340852
NA SSP1411 putative exonucleasechromosome CDS1461138 3030 - 0.291749
NA SSP2268 putative endonucleasechromosome CDS2344216 249 - 0.277108
NA SSP0016 replicative DNA helicasechromosome CDS20443 1410 + 0.389362
NA SSP1655 putative ribonuclease HIIIchromosome CDS1721657 933 + 0.336549
NA SSP1966 putative helicasechromosome CDS2030008 903 - 0.337763
NA SSP1190 putative recombination protein Ochromosome CDS1233267 756 + 0.314815
NA SSP1651 MutS-like proteinchromosome CDS1716379 2349 - 0.328651
NA SSP0029 putative modification methylasechromosome CDS37714 1044 + 0.272031
NA SSP1289 putative ATP-dependent DNA helicasechromosome CDS1331694 2703 + 0.303737
NA SSP1231 exodeoxyribonuclease large subunitchromosome CDS1270413 1338 + 0.310912
NA SSP0911 hypothetical proteinchromosome CDS939308 285 - 0.340351
NA SSP0036 cassette chromosome recombinase Achromosome CDS43065 1350 - 0.346667
NA SSP2272 DNA polymerase III delta' subunitchromosome CDS2346465 930 - 0.307527
NA SSP1198 putative helicasechromosome CDS1242795 1341 + 0.314691
NA SSP1253 putative ADP-ribose pyrophosphatasechromosome CDS1297055 543 + 0.320442
NA SSP1194 DNA primasechromosome CDS1237440 1785 + 0.298599
NA SSP1464 DNA mismatch repair proteinchromosome CDS1515347 1968 - 0.335366
NA SSP1168 putative DNA uptake protein and related DNA-binding proteinchromosome CDS1211740 723 + 0.295989
NA SSP1959 excinuclease ABC subunit Bchromosome CDS2019623 1983 - 0.369642
NA SSP1465 DNA mismatch repair proteinchromosome CDS1517327 2664 - 0.329204
NA SSP1947 integrasechromosome CDS2005132 1050 + 0.308571
NA SSP1145 putative endonuclease involved in recombinationchromosome CDS1194629 429 + 0.354312
NA SSP1504 DNA polymerase III alpha chain PolC-typechromosome CDS1558499 4317 - 0.353023
NA SSP1100 DNA-3-methyladenine glycosidasechromosome CDS1148113 567 - 0.322751
NA SSP1671 putative truncated excinuclease ABC subunit Achromosome CDS1736446 1506 + 0.343958
NA SSP1305 putative RNase Hchromosome CDS1352189 408 - 0.328431
NA SSP1868 conserved hypothetical proteinchromosome CDS1948998 393 - 0.3257
NA SSP1664 putative N6-adenine-specific methylasechromosome CDS1731455 543 - 0.313076
NA SSP2278 DNA polymerase III gamma and tau subunitschromosome CDS2356632 1713 - 0.3561
NA SSP0046 cassette chromosome recombinase Cchromosome CDS56975 1683 + 0.341058
NA SSP0335 transposasechromosome CDS368198 999 - 0.332332
NA SSP1444 thermonucleasechromosome CDS1496146 531 - 0.335217
NA SSP0991 putative truncated transposasechromosome CDS1022045 567 - 0.303351
NA SSP2264 conserved hypothetical proteinchromosome CDS2339602 552 - 0.349638
NA SSP1937 hypothetical proteinchromosome CDS1998254 639 - 0.328638
NA SSP0887 NAD-dependent DNA ligasechromosome CDS914684 2004 + 0.353293
NA SSP0973 conserved hypothetical proteinchromosome CDS1008009 477 + 0.337526
NA SSP1606 putative transposasechromosome CDS1677562 684 - 0.282164
NA SSP0030 putative replication protein RepAchromosome CDS38843 513 - 0.259259
NA SSP1808 putative ATP-dependent nuclease subunit Achromosome CDS1884872 3660 - 0.347268
NA SSP0659 DNA topoisomerase IIIchromosome CDS694092 2139 + 0.335203