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# Chlamydia muridarum Nigg, Nigg

>TC0774 conserved hypothetical protein
MKILAGKFKGKSLKTFSNPAVRPTSGVVKEAVFNICANHIVGARFLDLFA
GSGSMGFEAISRGAGSVTFVDSSVDAIRLIRANLALLDNNLPVHILKQDV
RSALLRLGKQKRAFDVIYVDPPYSLENAFLQEVLSYVVQQSLLDPEGILF
LENADTQEIIVKGLELRKRRKSGGTFLAEYVLEREA
>TC0255 integrase/recombinase XerD
MSMLFPLHQQLIEQFTIFLSVDRGIAPLSVQAYCQDILLFLQRVPIETTD
MINQESVFLFVEKCHQAKESETTLARRLIALKVFFHFLKDAKLIHQQPFI
EHPKVWKRLPSILSTEEVNSLLNQPLNTLNLDAYIANRDTAILYTFYATG
IRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKARQTIDSYLTMFRE
RFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKHISPHSLRHA
FATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHPRSS
S
>TC0755 conserved hypothetical protein
MQIILPGIVLTHSPAEKQHVIAKIFSPAGLLSAFAKNGASLSCDFRESLL
PISFSLFTIQHTPPKMRKVLQGELKNPFTTIKNSYRLLQSTGKMIQAILK
TQWQEKPSPQLFSLFLNFLQRIPETPHPYFFSSMFLLKLLQHEGSLDLSH
SCTLCKSSLESSTVYRHEGSLFCEKHAHEKTILFSQEEEQILRIIVQAKK
FQELMCLAEFPIDIDSKIDSLFSSFLTEKMNVLP
>TC0225 conserved hypothetical protein
MEKTRKFEKALENLEQLKKISYGYSDGNTASPSHNKALSEMKEALHYIDH
YFKQAGAFHQKDIDKAIKETDFLIAGVQDVFSFLEDRKEAVYRSLSKDYL
HLNHTYDVAREYLNNKVVEQKEAPSPSFEVCQEQEEFLNNLVEVKKDRSY
ELFYMANENNKRFYTDALAQIIYKQGKIHESMHENDPLTKTIVWNSEEVT
KLASSLVYTSDMPIRLFYQKALTNMSAELTVNVHNALMALFLARHEATAV
SQHPKKENLRYFNDFLHFLRKATAILNEKDLLDLQEKHSQSLVSSLSAKL
YDHTIDFEEAINYIVLNISSKIQKEEGKKSLSAGQYVSEIYDELHRLFSK
YPNGPLFKAIDRMLDPYLKEFDPILLGILPCLEGKLHQGDKEIKIIRTPS
PVSQSSILYANCNGEFLHFLDSKMRQGDKVLVVNIQNRLSRKDRARSRII
EESLQNYPSTYVLAFPEPEDLLDGLERIHGELETFADFFSVVQQEFFKPK
TQGFCLLPEETKQRMGVFLERIVPSLKDVFFSKKKILFKNDKTLLLHLIY
YFIVFNLIEQLDPNILVVMSKDGLDYASIFVSGFAFFEDQGSWDEDSLKL
MVAKILAPTLVARDRLVFAQHMELFSKFLNCLRKNRQNLKDLQAFFSYDL
EKWKFSGI
>TC0790 conserved hypothetical protein
MVWLWSLVKLRLLSLLRFRKTRSFIPPDQYEEYSRSMLQLFCLRKDSDIM
EWENTCQILFGVCIKMSEDLLRSERQMQIQSASKEQSLAEWEKLVSELKF
QLASQEDESRQEISKLQAENNWLQNRLAEKLQQARHQNDVIDELKRDLVE
SVQQMEVSEGRRLCYEHKIKMLEEQIDRFLVKEEV
>TC0909 conserved hypothetical protein
MSSYYLNFRPNTVSGEGLFKIKLTNPCSDFKNRAKPAIDIEELNSGLYIL
RRLSVALEAGYLGVGSVINPDNKIFPGGEGIVRRFQEGSVLSSRTISGNT
VADIKQSTAKTLVTTISDGLNTLIEDIPELPMTQVGSISAALILMETYKS
KPSLNETEQTTVFGNAYVPSDESIKAIIKKEMEQEIQEKKDLIITAQLTA
QGASDQAIEESLRDYEEFYVSEYFNTHVKEDLWKYRATIGANIQEMLEKC
SALGPDIPTSLTKDNVKEANAKSVLKAWMEAFSNVLEVEPALGGSQEIIE
AVLKMIPYATKTTLTDEDIHKIYEQAALPSPEVMDYYLTKQEAGICKGAV
VKAFQQATQNLQAVRADVKENIEELEIKKTSFQQAQASLESMLEGVKRLN
DNKAFTSVRLASVMECYSGLMALSQMSNVLETNGKTLITEYVNRFLQLNN
TNTAQTLAHVISYMAAYCEVAECTMATTFLNQTEVIPYVNNKFQELQQQP
FCATLASPGVAELMKNYIDFTNGICKANFSNFVDNVITKDLDLSAAANQA
QAMLGEFQKKAEEYLNTFQTEIDNLNKVYNELDPAKATFNVGIGNQETLH
EKAVNNWIESTSLGSAFIHLVLNTQIPKQENFLNPLIQEVNFNNVAANAV
NDLLSITNNFSTSSVYYNLSSYLVESKEGVDYFCGGFFEFLCAFAKEREY
ILRDINSCYRAQAFGNALLARIEAMAAGNKVTAAQANNMRTQTNLYLAFI
RIIVEQLSVLDSLLRSLNYQPLQKDGNYDKDKYEIKGPTDWISTLASLEG
YVVNGFDSASPSGGLGPMHTLVQTDQHDYLTQSQTQQLNLQNQMTNIQQE
WTLVSTSLQVLNGILSHLAGEIYSG
>TC0317 conserved hypothetical protein
METCQNSVRIESIKDFIHHFENQRFKVFIIGSSFPEDKDIFLELYVSGRG
RLFDGQRLVKQELLSWTDNFGLFTSKETIGIYQVEKMSSSLQEFIISYAH
HPNPHLTLFLFTSKAEFFSAFSSKLPNALCLSLFGEYFAERDSRIAQVLI
KRSMDVQLSCSLGVAKLFVSKFPQVGVFEIFSEFQKLICQIGGKSCLEAS
DVQSFVEKRESASLWKLRDALLRRDLSTGQSLMQSLVSDLGEDPLAILNF
LRSQYLSGLRAIAEQSKDRKTQIFFAAGEQALLNGLNLFFHAESLIKNNV
QDPILSLETMIARL
>TC0152 mutT/Nudix family protein
MMKTKHEYSFGVIPIRFFGTPDRSTLKACFICHTDGKHWGFPKGHAEEKE
GPQEAAERELVEETGLGIVNFFPKIFVENYSFNNKEEVFVRKEVTYFLAE
VKGEVHADPDEICDVQWLSLQEGLRLLNFPEIRNIVTEADKFVQNYLFAS
>TC0021 exodeoxyribonuclease V, alpha subunit, putative
MNETLHVQNILQSLLAQHILLPFDLVFAQKHLAQTSSSNREAEAFLVVAS
ALLRCGYPYFTIHKATISPTLPGISNRLLFQWFQALPSDVKATLFEVCDD
KIYLRSLFLLREKVFQKLHTLAEAVPRTSLIFENVSQLSEEQNAVLGNVL
NSCFSLVCGGPGTGKTFLAVQMIRLILSQIPSAQIVVASPTGKAAAHLHS
VLSSQEIIGASVEVVTIHKFLKDVNNGRSPVDLLLIDEGSMVTMNLLHGL
IKTIRGEIREGKLFADRMVIFGDVNQLPPIGIGVGNPFHELVSEFTQQAF
FLSTSHRAKHKELQELAKSVLHKQPIPFQPLPSRKEAIRRLSDAFVQTAK
AGISLCALTPMRQGPWGFLQLNRLLFNEMQEKHPQAPVPIIVTERYETWG
LTNGDTGILDPLTQQLHFMNGEILRKEDFPYYSYNYVMSVHKSQGSEYDR
VIVILPKGSEVFDSAILYTAITRTKQCVEIWADKETLDMVISKKGRY
>TC0538 integration host factor beta subunit, putative
MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDF
GVLQVVERKPKVGRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPTKSS
>TC0081 helicase, Snf2 family
MQTGTSNRSVNPLCFRGEMLNFRKLRRDFTANILQDGKELFTQGAVVSAK
ILSMNSETVCISAQIRGSYDNVYECEIEVDRAESDTIDSNCDCSYNYDCQ
HIVALLFYLEQYFNEMVVTYSKEAGLSSNEEVSKELQETFVVAATREEER
RDREHQKEILREYNHAANVLSENPFFLPLEYSEKDSAELAVLFVPQKNEK
EVFSPNQPIEFQLVLRLPGRSKPFYISNIKTFLEGVLYQEPIVFSGRRFF
FTLQSFSASDRKLIDLLIRYARYATGNAEEKLLKSAFLTPASLGMILSKM
LEHQMAESGGVKLGERECFQGIFCGNLEEPLFWSVSPAKMKFHLDYFDTP
YKALLMKPLVVVDEEEIQPEHAVLLESNCPGIIHKNVYHHFLPQIKRAHI
RTFAGLRDVAIPEALFGSFCENALPVFRDYAELSNIEALNVFSTLPYTEE
LRGVCDISYLDGELEAKLFFLYDGQRVPATSFSLQYQDVRAFVRPDGILA
RNLVEERKILEEVFAGFIYDERDGAFHVKSEKKIVEFMTETIPNNQHRIT
FNCPETLSDQFIYDETVFDLTFRAGADINYYEAELKVHGLLKGISLDLLW
DCISAKKRFLELPKKGCQLKKARRGKAQASKLPCILVLDLEKIAPVIQIF
NEIGFQVLDDFVEKCPLWSLSGISSASFKNLPVNFSMTEDLAEIQKQIRG
EVDFEFQEVPSQIQATLRSYQKDGVHWLERLRKMHLNGILADDMGLGKTL
QTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVIDGIP
SQRRKQLSSLEEYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHHIKNRT
TRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVG
KYIRIGNYMGNKADNVEALRRKVAPFILRRMKEDVLEDLPPVSEILYHCH
LTESQRELYQSYAASARQELSRLVKQEGFERIHIHVLATLTRLKQICCHP
AIFAKDTPEPGDSAKYDMLMDLLGSLVDSGHKTVVFSQYTKMLGIIKQDL
EAKGVPFVYLDGSTKNRLEIVQQFNEDPSLLVFLVSLKAGGTGLNLVGAD
TVIHYDMWWNPAVENQATDRVHRIGQSRSVSSYKLVTLNTIEEKILSLQN
RKKGLVKKVINSDDEVVSKLTWEEVLELLQI
>TC0003 conserved hypothetical protein
MKNNSAQKIIDSIKQILSIYKIDFDPSFGAVLTDDNDLDYQMLIEKTQEK
IQELDKRSQEILQQTGMTREQMEVFANNPDNFSPEEWRALETIRSSCNEY
KKETEELIKEVTQDISHTSGKSPTPKAKSSSPKKSKKKNWIPL
>TC0823 DNA polymerase III, epsilon subunit, putative
MVLLKDIEFVCLDCETTGLDVKKDRVIEFAAIRFTFDEVIDSVEFLIHPE
RAVSAESQKIHKISDAMLKDKPKFSEVFSTIKGFFKERDYIVGHHVGFDL
QVLSQESERLGETLLPKQHYVIDTLRLAKEYGDSPNNSLEALARHFNVPH
QGNHRAMKDVEMNVKVFKHLTKRFRTLSQVTHILSKPIKMKYMPLGKYKG
RLFTDIPLEYLLWASKMDFDQDLLFSIRSEIKSRKKGTGFTQANNPFLGL
>TC0626 integrase/recombinase, phage integrase family
MIASFYAFLDYLKNMKAASPHTLRNYSIDLSSLKCFLEKKGELTPTPPLS
LQEDSRSSSQLSFSLFTKENIRLYLLEQIQTTHSKRTVRRRLSAIKSFAK
FCVKNQWIPENPAEMIRGPRLPKELPSPLTYEQVLALMSAPDLDKVTGFR
DRCLLELFYSSGLRISEITALNRSDIDFQSNLLRICGKGKKERIVPMTKV
AVQWLQAYLDHPDRAAVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTG
LSGTITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKL
KKQIHDEAHPHNLED
>TC0490 UvrD/REP helicase family protein
MWVSRSGVISQLVLVSLVFYFVCAIIYIYSFFLVKRSCLKLSQQLKRIDI
PTILHHGFCGKVIYAKQEKRVTDYYVAYYQRVRTFCRRFRYFGISSNPIL
LKFIQDFESITTLIKKHNSEIISYLLDLYKDFFDRVLHYPLDEQQRRSII
SEEENCLVISSAGSGKTSSILGKVRYLIEIKGIDPRRIALISYTNKASSE
LTKRLATDGLRGYTFHKLAVDLIGSITGVKPSICSNPEELIEEICQKLLK
TKDFLKNVLKYFVFYDDCESERKIRDQLSEQKKPFLKAVFPDMDGKTIYV
RSKQEQTTCFILSSLGISFRYEEPYEFQVADETHSQYRPDFSLYVTAQNG
SLRRIYLELFAINKQGRVPPWFVEGTNKTYKEVNQIYLDGIAWKKQTHKK
FKTELLTLTSEDFYNSNIRENIWDTLRKLLERAGIPIQEKKEEDLYNALL
PKKSVQEKALIKLIVRFISLMKSNHKSIKKVLYCAKIAKDIPSSWLIEKV
FKPVYERYVDTLAKRGQIDFTDAILQATEICRHSSSGKYDYIIVDEFQDI
SIDCCRFLQELRKGNPPAKMYCVGDDWQSIYRFAGSNITVFNQFSDYFGP
QEIHRLETTYRLGEPLVSLSSSFVQRNNFQIRKDCRSFNPDIRTELVFRS
YYHRSEKDYCSCLELEISKIPEDKSIFLLGRYSFDDYYLSKKYQLVKTGS
NFFYIIGNRKIEFLTVHKSKGLEADYVILLQCNADRYGFPSLVTDNKVFN
YVLSESDSFPFSEERRLFYVAITRAKIKTTVLYDKKFPSEFVKEFIKVDE
KRAQVPRTPVNAYKIWTRSEESLLLQLCKGMSVKDIATQTGRSPTAITAR
LRKLQKVGLSKRPQFVKSHNSFIRKKRFCRPEWKQSSRRY
>TC0532 DNA polymerase III, epsilon subunit, putative
MPDLIFYDTETTGTQIDKDRIVEIAAYNGTTGESFQTLVNPEIPIPAEAT
KIHGITTSEVANAPKFPEAYQQFSDFCGTDNILVAHNNNAFDYPLLLREC
RRHGLPEPQLRTIDSLKWAKKYRTDLPQHSLQYLRQVYGFEENNAHRALD
DVITLHRVFSVLVGDLSPDQIYNLLNETCHPRVFKMPFGKYKGKPLSEVP
SSYIAWLQKGDYLLQPENKEIKAAIEAYQQLK
>TC0044 serine/threonine-protein kinase
MLELGVSFPSKTKYLLTRELSRKVGLTVYQGVDESSSRPVVIKALVSPGI
HDQRFLRAFEEEARIMQLVDHPAFVRLEEKGEWEQGRYFVSEYILGHSLR
DIILSSHLALDKAVSIVLQVAQAITALHKHHVLHLDIKPENIMISRLGEV
KLIDYGLSAWQFNHWGSPAYMSPEQSRQEKLSPASDVYALALLAYELIMG
QLSLGKVYLSLLPVKISKVLTQALQPDPEARFPSMQEFATALQDYLMHDV
HEDYRKKDRVIMQFEQLQQQNMWLAPDKLCMPEGMALHIYSQKEPCDLHN
VYYDILRSEDIVELWFCYAQGHCSFALSMIKQFLNQRTEKAQDIPTVIKT
LDTLCKTMHIPLCEKGISCCCFIFFQQELMCFSCGKTDFSLKKQTRGVQR
FQAESQGIGEEGPLEIHKQSFLWEPGDELIVHTPRARDLVYLYCPSFLKL
QDRGQMDIFCQTDYLQKEVRQKYDGSLYPSTLISLKRVR
>TC0456 conserved hypothetical protein
MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQA
LITIIKERAVTTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVIL
WDERLSSAQAERMLKNDCGLSRKQRKNSSDSLAATLILSSFLDSRKLY
>TC0438 adherence factor
MPVSGSIVASKENTSASLQPATTLNNGSSVEFFQQITVYDDARNFTNHTT
EDVIKIGEQLQRKFYNMTEGTQVPFTTSPAYHTGNWKTAFIYNLAQVIAN
LFPSTIQPIRVNSTRSSPFSTNSSVEKRNRFTSKDTKVQPPHTTRSVSPR
KRKSVIVTRSVNIHNHTPDKKSSGESLRNISLEKPVLSRKRRDVEKNKEI
KNEPSVNKYDLTYKNIAEKLGLSSEQQTSVKELLNKLRKAITNYNALIEK
NSSEGQSLLIRQAKLVEEIQEKISPAVSDKKGNEKKTEEKSKVSFIKDVA
DIIKAEFSGHLVPVDKIIHGIWIAGAPPEGIEQYMRVFLDTYPDYSFYFW
VDSNAYGAAKFSGILKRMAFDVAIQELRDSTEESTKVFVKEYDDLKKKYE
QRIAQTHSTKKKNEYLQDLQSLLEKYKTVSDEVRGRFDVLFLKNVVITQD
NFFNYCLLKGVGNISDETRMEYLEKELKFSKEEIEEYRKLKESNKEKIAS
VVKKLNEQLGSARVHIKDIKELNSMKHSQNIYNYEMEMFLRWNYAAATDQ
VRMYMLEEYGGLYTDLDMMPAFSQEVLEVIKKHSVGDRMFEDMTSRRAIS
DAVLKLAVGETTTVSIEDIGKDIDISRLTEEDKTKLGELFKELEFFVKKD
TQNSSKLGKAKSFFQPMNMDIVRDTMPILRRYHYYPELGWFVRGLNGLMV
SHKGSAAVSHVIKGQQDAYQELAAMRQEVLSGEFFRSLEDLTHRQHKDLI
GGHLVSDYLAKSLFFDYRQDSIMPEAVSTLGITGPDLVAQKLVELFKDWG
PLGRDFLTPRGKKLGDMAFLGSYKKIPLDPSDPRKYTFDWMNPLTVGSND
VTPADESTWCGSKKRCVAELLFSDSSTKLSTNKLQGVTRTKIDTSTFTSL
WKEESKKKLPPGLLESFNRFITEKTVDILKLSELDQKIYVTQSAIQDDNI
AKASLFSLQLQLAHLLRFAPYPVTNHVHFFPQIQKELDSDYVKAIKLFLK
TSSTTTVVLWHSSQQNLSLFFKELLAISERRVAIYNLLNPEEAAKARKAL
EKKERDKKGKQQEKDSSEGEDQQGDQKKNFSEYAELLKQYEQHKAKDSLG
LLSEAEQMTFLEITTQIAENPTLFSVISQIEAEISSGYVFRALESQVSKW
FSLPEQQRRQQILNLLKELEKDAIKNSKQDKKDHKNWLETLYDQAEQKWL
QEPKKKLQDLIKNSGDNSRVILKDSDQLLSRNELFQSMIKKGYPFADFAN
ILRFMVADAGISGIFSSKAIFPAPSKQLVDLLKKTLGGDFATLQDALPTV
YDWILEEPNSERTNKLFKQFPENLQKELKNIAPEHLLTPPIDTSVSALGM
RFSTEVGLESDSVMASIGSGFFNPSSYSMARYMEAIFELQQKIVNGELQT
VETVKNILQKKGAESLYHADRAALLVQFSELRYHLSLTEVQKGLADLDNL
GQAPSYLLTGPLPGLGHIMLRDRDFGLPLATSMTDPIGLSTYDFSGIGGR
KDVFSTPSEVPSIHTIIDRVKYDTFSWTKFYERYSGIWGDLAFRLGAESL
RTHPQTFIYDTEGRCMGLSYLFLAAENIAAYGILQDNLSTLSALFLERER
EKLPLSREDNRFLDRGLALIEWLQHRGNSELQAGGIFSTVDWDIPSLTKL
FEKSSVPGVLVTTPSHAVTLHFFDGAFRVTDPNFGHVDFPSLESALYFLE
YMVQISSDVRAQYGIKEGVSVPQQLKVYVPDSIEARNAWNIPTDAGLVTG
YQMTTLDRMIVRGEASFSGIRTTWATLFAMGLTLNGNRIDERTKESDLDK
TQINGDLLTSFLSKNVLDERGVALGRTLVETLPFVAGTRLVSSGAIVETP
NDVASLLQASRERLSHFKDVIQVLLRELATKIHGKGLKDSDKVSVKSVTV
EPSGEAAIVLEKQDTPKKTSSYTISVKIKSLRDAFQNFGKSLNELANTGV
MDVELGLSVLSLIQYARLVDAGKGSSPEALFNLILDVKELTEMTVGTVIQ
ALQKQFITPAGIDGFRTETLLARQIQKVGTRVGGTVGKALGSVARVLELP
VLETIAGVWGLVSSVEDLLHADSYSDRVAAKVQISFDVITLALTLSSALA
PLAMLAVGPIAAIGMGAASIARNVARKEERHYAWVEYKQFLDSAAKLVVK
AYPESHLLDLSGNRVLGNLYLDLSQNPPLLKGDVSRNYDSLIGHVGDWSD
RQVRNRLGYGYRSSPERALAKGHANTRWPREIPHIAKGVYETVYLGYGIQ
YKVYTEIVYLSNQVAWRDAVMDPTSRYYIPPLVEEGKSATIIAGNTPLNV
IMLRLLDEDTPARISQNLAYKDYKIKLVGGKGGLTVQIGGGGTYTLTGDV
SAKNTISFRAIPPPLGVCFNLSNHAMQNVPMMRPNGTKIEALKIQQTGFS
VIAGSAEGYDILTGEKDTHFYISSGGGKIFSGLGKNWYHIPKLKGRLDII
LAKNSAEHLLLMDDYSYNWQSLGTNLTLIPRGEGNNNSGIFVSNFDASPS
FEQWVNKFTVKMADGITLFALNKSSEDQNFSLATTNTIVTLGVHSVDQTI
WSNRLPEEPSYIENIFNWLKKFCWWLAPKVTVLQREGTADFYYRDQKLIY
HPKPFAELDLHPQPGYHTYVNGSIGDTYIFSESPWVNLSTVKLSLADDLG
HSQTVDLSSLVPTFVRGRMTSQTVNGPSIDLEISSPRYTLPLQISWGSHV
LPRNTRFDVMPNHSPTLGEWYDKLNTNTSEWHTLFHNSMLIPKSLVSVLS
LNNTVTVMVRHLERKNEHILGVENRDSINRKVHGQLYAGFITHTIENRHW
YTLQPNLVEFDITVPAKSIKYFVFRGRLLFRSYLEPKTLEVRSGTPIDFH
VWSQYDKIHVHATTLKLEKFQVYNVTTATDALNRYLMYAQNLAYIYGRDF
VLKFFFIRSGTGIGAIQLVFKDLFKDSFGTEKTLGKEAKSTTPLYSIINP
SYKDHLKFFLGEGEYDLTQYIQEISDTSHIIEMLRDPTTHELQEPSHLPK
NPIVLTYTIDPQKDSAGGGKLQFLDKTIKAYQLPFPTMAEHYYYMDPVSG
DLYITCIALTNPVERAFSLRLPKFKLNWLEFQNIFIFGTHSRTSQALGSS
GTGVMFVGPEILYMEIDLSRVIADRSFPDRVSSRSSVVFPTNDQVVLYNP
SLAKKFYSYSESMIWNLRDRAKGESDRAKAYDIYLLDACTSKDKNLNWAI
PPKLLDFALAYYRAWVSHWVKQSLKKGYLIQLPAGSIQVSLITTQSEYFA
RQRKQGFQVFYSIYGLQGKVIPKQFPGDMLCDIKEDVVLTVKAVDESDYD
NRKIYVVLDLATEEERKLRADKNVIVIPGGEQSKY
>TC0762 DNA methyltransferase
MGAPMTEKFFVVSPTSKNFLAQACSQGLSIDKYPPIQIIVHFRGDSIFHS
RLSLAPVFTCLFLGPGAHKAMEGMVHWCEAYAKKNPSPLSFLDLSSFKEK
QLEILKAVSQISFGIRSTYQAIAEQTETSKEEVLATCKQNPLPLLIPCHR
VLSVKDYPGGQALYEILTRFEGI
>TC0346 recF protein, putative
MRVHSLFLKDFRNYSELRLELGPEMNSIFGLNAQGKTNILEALYILSLGR
SFRTSRLTEAIRFGSSHFFIEAVFSQNQVFHTLSIQVDKRGKKILFDGAP
ITKLSALVGLFPVILFSVKDTTIIEGSPAERRRFLDLLLAQASEKYTGQI
ALYHKALDQRNAAIKTQDYKTIAAWNSPLIAYGSLVALLRYECAKKLHKI
FQNLWDNTLKETLSLRYESSLITTESPTLNDIASNYYEQLRLANTKDFEL
GYTTVGPHRDELIITLNDLPVSKFSSEGQKHSLLAVLRFAECVYLQEEFL
IHPLLCMDDIHACLDQNRLDQLFQLSTSLGQTVTTSTICPNHLDSNSSIF
HVTQAQVSLVTSNFL
>TC0713 conserved hypothetical protein
MTTYPVPQNPLLLRVLRLMDAFSKSDDERDFYVDRVEGFILYIDLDKDQE
DLDKVYQELEENADRYCLIPKLTFYEIKKIMETFVNEKIYDIDTKEKFLE
IVQSKNAREQFLEFLYDHETEQEKWQQFYVERSRIRIIEWLRNNKFQFVF
EEDLDFSKHVLEQLKVHLFDAKVSKELTQARQLLVNKSKVYYSNEALNPR
PKRGRPPKQSAKVEAETTVSSDIYTKVPSAARRFLFLPEITSASSLTFSE
KFDTEEEFLAHLRGGGRLEDQLNLAKFSERFDSLRELSAKLGYDGDGDAS
DFFGEEYDDDDDDDDDVKPKKAAKRGRKKARS
>TC0008 exodeoxyribonuclease V, gamma subunit, putative
MCNDQRLERSFPSNNTHECKPMNELSHSQATFSNYPEVLLAKLAQDLFSI
NQTPMTKRWILVPSSDTDHWLRRELVKASSNHIFMGTHIFASFDAFVKYL
FTGTRLADLSTPDHITLPLNIYNLLRESSFNSSSDVSYAHLQKLSSLFKK
FYTFSQEPSTNNPYYKNLFTQLTNAYTPLETIFSSILAHPPKYPCSLHIF
GYPQLPQHVASFFISLGKYFPVHFYCFSPSAAYFGDLLSDKAMALLSHKI
PEPQQETWEKYVLTDRLALLANLAHRSQSLQNFFLDYSVPYEELFQPYEN
NSSLNIVKDSFFHLRPIDQKLFADSPQTIFVRKAPSAAREVHQLFSIISQ
LLNSGVSTDEIFIVSSNLSKYEPLLKGIFEPHIPLYLTKSEKSQTRDLKN
KLLLLVAFLFSKCTLHDLLKLLSYPDLRTPLETTKISFLTHKLSRYWKSL
SQKDPLISQLIHHIFDEYPFIDDSGVVNESETWEIVVPLLDLLQQVITHY
TDSKDKTYEEHSHLIFSTLENIFLLSTEEHALLVSLSKTLQPFAHSSCSL
TIFVEFCLDFLSHIPGYSQLYNQPGPFIGSINSLSLIPKGYTFILGANKK
NFSLDTSFLIDPSLIQEDFLFSSTEDEDNLHFLQTIVSTKHQLHISYLSS
SKNPALPSSALKHLLDAVPIREENLSGKLYAKENFSSQSLHQSYQVYYRM
AQADPIQNKAPSLFETASPKPLPTHLSLKHLVKAFKDPLNFFLNTQHGLS
FHPKSLFSKAEKVFPSPYDAKSFWDHQLAPHSPLPTTNYLSSFTESLYTQ
TQDSIIQRVETLKKDPSTAPFSVVFSHQIFQEPSSPHDKYVPPFPLSLHN
QTISLQGEIRGVCSQGVYLFSMNPGDSFKKATKSHGLPKNSFELESCLEA
YLSLALLQASHILPKDSAILRVTPYDIEPITPPFSSPESYLILAVGLYEH
LQNKAIPLPSAQAWEYIKKTDVASKIIKKLLDNEEDPLTNSFWLFHNRDT
EEICSELSKDLLSQLLSLFINQDTQ
>TC0883 mttC protein, putative
MEITDAHVHLSSEEFIEDFGEVCLRGKTAGVTRVVNVTTTKAELLRSFAY
AEQYPSWLFYHVAGTPPQDAQEDIEEDFQEFCRAAEGGKLAAIGEVGLDY
LFAVQESEQERQKEVLHRYLQLALQHELPLVVHCRGAFEDFFHILDHAYR
ADKRARPGMLHCFTGTYEEAKELLARDWYISISGIVTFKNAQGLRDLVKE
IPLERLLVETDAPYLAPTPLRGKRNEPANIIYTLMQIAEIKGIPLNELQE
AVSANVQRWLRGS
>TC0575 serine/threonine protein kinase
MQRYELIRLIGRGGMGEVYLAHDKACSRRVALKKIREDLSDNPLLRKRFL
REAKIAADLIHPGIVPVYSICSDGESVYYTMPYIEGFSLKHLLKSVWQKE
ILSKELEEKTSVKAFLPIFDKICATVEYIHSKGVLHRDLKPDNILLGLFG
EVVIVDWGAAIFKHAKELQQEKDEEGFSSYGQKNICYSSMTVPGKIVGTP
DYMAPESLLGAEASEKTDIYALGLILYQMLTLSFPYRRKKGRKLPYEDSI
LSPIEMAPYREIPPSLSQIAMKAIAVDPVQRFSSVQELRKALQPHLQGES
EWTTRDILSTKDRKNWKYYEPILLSRYFPVLASSPAQWYNFMLSDMEVNS
SVRVECSVTKSSVQEGVGIFFPPSKEADKGEFYCGYGLWFSSQNNELSVS
LIKNGIEIQKESQGIIPQQSRFAISIEKSNNKITVFVDQILFILHIDYLP
SLGERIEIIIQDLQGISNITILESIGALRVSCLAVPDAFLAEKLYDQAAR
FYRKIRDSFPGRKESYEAQFRLGVTLLTQIEEQGGDLMQALSTFDLLHGS
TGAPLEYLGKALVYQRNGSFVEEIRSLLLALKRYPQHPEIPRLKDHLCFR
LYDSLHKHRSEALVFMLLILWIAPEKIGLREEERFLEFLHHRQQSTLFCR
IDKTPLQFKSSKMELFLSFWTGFTLFLPELFQRARDLRDYQALIDIFYVV
CASGNKEVFSQFAEDLAIFVDEVVFPKSLHNQRGEELVLFVQGLAALQNR
EYRQAKEFISAVPFALQLYALDLFSLQAFIDEEVKVFSDFLQDIYNSASA
EDHKHVLVYMIQVSLWNQDLKQAYELLSKNFPQDKGLIEYSEAFVLWGCY
LALTGDRSAVKAHFSRCQFKYGRSALIGKCIDDDSLDYLEGLVWWEKKKT
LFQSYFLLRCLHAPKERYEVYRQAYISMENSFFG
>TC0843 helicase, Snf2 family
MILMILNSLSMFRRQATRFLQDNRESIAVSFFKNTYKITIPDEDSPDGEW
ISTLSFNEEERLSFAACSCPDGDCCEHLLIATLAAYTPTEGALLHTKFEA
SFWWRLFCKLFLSKASLQAPGEKIYTVKSEQISVSIQCLSAESLTSWLPI
VHNSPEPQKITEETFPQSALYRIARELFLYTQKGASLIVQENPQGFPSLF
SFQWAGISLTIEILDVDTLKELFPLLELSQTSLYNGDSYLLRDVHVVPEQ
AKIYFTKEYPPLSKSIREYQATNLGSIEYFAGAHKCTAIPQKLSLPIHII
PALDHSFREQLLSQLCYETEERPIHYDIHFFRDASLSFSAYLETPGDLAE
GHIIYPGFCYIPNKGLLAVSGLLSPESTFTIRADHIESFLDEYGALIKEP
GFETFSNKSPTGTLSYSVTEQGVLLFHYDTGNSSDIELNFGKWTYYSRQG
FFLNSRLDLALQDGLTIEAPHVADFILKHEVALKSIPNFFAPQPPLKTIR
FEVHKEKKGVGIYLKPIFEGLEQESCRLFGQFLYRENIGFSLLPASLQMV
CQIPTEVPANQVTEFLLQFSKDDRMIFPDPQLALPEQVQLNILSIQRPHP
SSPLHLKLEIKTNIGSISLGTVLQALKGKKEFLFSKAGFLNLDNCLFVFL
KQFLSSQRYDIQESTLITMVTDIFKLDALAPLITDPNIDASEEDLAYFSQ
LKSACLPPIPMNLFSTDHKLRPYQNSGLLWLWFLYNHRLSGLLCDEMGLG
KTHQATALLDIVAQTAKNPKFLVVCPTSVLPHWELVLASHLPKATLFSFH
GPHKPKTLPDCDIIITSYGTLRQNYALFYKVSFTVAVFDEIHMAKNKSSQ
IHKILCRLDAQMKLGLTGTPVENNLIEFKGLLDIILPNYLPSDGLFKRLF
THKNSSETDENIVSSKDLLLKLTRPFILRRTKKLVLPELPDKVESLIPCQ
LSPEQAQLYASTLKKEKCQIQQLEKEDDPAAVNYLHVFALLNQLKQICDH
PAIYFKDPESYKNYASGKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIS
LYLEEQNIQYALVQGKSQNRKEEIDRFSNDPNCRVFIGSLLAAGTGINLT
AGNVVIMYDRWWNPAKENQALDRVHRIGQKNTVFIYKLVTEDTLEEHIHY
LIEKKMRLLNQVTTTQDSNILHVLNREDLITILSYKDEHGLSDEVQEDSG
DS
>TC0459 DNA polymerase III, tau subunit, putative
MESSAWDALIQRVRDQKVPSAIILHGQDLSTLSTCAYEYASLILKEGSPH
ASYKIANRLHPDIYEYSPQGKGRLHTIETPRAIRKNIWIHPYESSYKIYI
IYEADRISLDAISAFLKLLEDPPYYSIFILVSALPQRLPPTIRSRCVSFH
IPLEKRDLIDKKDISFLISLAKGKESVMRVGSRVKGAPDDDKQVLRDKTK
AMLTVLLQLFRDRFFLAKKMPESLLTYPDFLDEIKTMPVYPLEEVLSIIT
RAVQALDTYSSASSCLEWMSLQLWSFRNRQRTAIRNRKGC
>TC0424 conserved hypothetical protein
MTNPAATLSTSPDLSLKERLDASGQLCTQAGQGSPQPLSLEARRLNSNFS
MRRDLVDVVEKAIESTKGNELKKLTIYEIALKVCTVIGAAILFAIPLCML
LGVPLWIPVVICIGAGITFSIVKGCLRRRCQQIRQEYRALHLYHRYLLSN
KDSIDGTFLSRFDVRVRKPEEKLHGVDSEKRGDNHPIAADRKYDFAGLAH
QRYQVDAAIGIPSVQNSFWRSAAQQVKVVKDEIISGEKTSEDLRLISKQA
LQVAGIDFSGAAGKESVLDVAKSLASLLAFGAQVGKDAQKSTQQYHQRFF
GSPLLATWCGADLSLAAQDFVAQGKNFLDVSSRHYATLQIAIEKVQLVPV
LCKIRGWKDRIRSLAQQKTLTAALLRKLYCEIEDAMHEICIEDGISPYIQ
DQVRIVTQKCLREELKDLLGKTDEELKPCDLSKIQRSVCLFATSVVSLLE
GRMGVSEKSSIKEIEETVYRELGSTILQLGGLSGGITPLIDNVHKAIRQG
RALSNELRQSIQLHPERRFHRLQAKVEKLQGFIRDPKWGASAVHLSSQET
LEQKRQLLDKLTGIQTLLSDWETRYSVFKETKLTHIVMEDFFKETEKFLN
SHSAVAESCSLDCSVEELKDCDQALNADLGNIEKVMNPADVESAEREFKQ
LISDLAGVQEQLDQLSVPICEEGVSGKRLLLNTLLSHPDTLQKKELEKRA
ALEAFTSGEDPEFPVRKEETLDMVSSGYDYLSNLLGKINSFESILEESRD
KKISSQYMQQLMGLANEISYELSSSRKDPIDNLLCRLEGLSTSIPLEESV
EVSSSPVAEKIARASYQRINRVEKSKVSKTLKAFTHLIKELRRSLRKAML
SKAVVAAVLSIAFSCLAIALFSVQLTWLPIAFCVIALVLEAIPAALSIWV
DKENWKVEVASLAKELSSDKRKLPYPEMDVQNIRKLKGLKDSYGLDGVSE
LRVAEAALLGAKKLPEEQKQDTLQSTIKALRADLKVLNKKFKRLPESYQP
KKSSEAVSAKRSNGNAASVEKELAALEEKQKECHAACLQFETESSRFLAE
RNRAKLFESKIAQQRKEREELGNQEARYTQVISCLEAFIARKGVSAQHKS
KEDLSLKITELLSLNNQSLKKRDCNPLSRMQGRFQAFAEEGCLQDVKGLL
ELNMCLGSAEFSLYRDEQNRMSSERFPFQNSQQLLQYGKNLFDSYDKGDR
TPLLQFILGSGWGAIREACFELKSLNKRKQKGSSFAPEDYENACKALKRF
LKARESLRFKLSLPLGGNSELEIGLQHHIRNQQWTKDRLTGRHQECCRDI
LQHLEDWITKTRNESQECQKVETEIQNFCQKEGSCKNLQDSVKILFSNLQ
ADLNKIPQDILRAVLRSLSLKLCYIMDKKLECEKLEEKFAKVDAVVKIKE
SEFEEHGEKWFDQYQLLQTQMKQLELQKEKLLAEKN
>TC0007 exodeoxyribonuclease V, beta chain, putative
MSSFDIFSPTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNI
LVVTFTNAATNELKLRIQESLKQALTLFSQALSHPETPLPPYVSSQETKV
KQLYXKXRNSLATLDEMNIFTIHGXCRFTLEQHFPWVQPIHPSSMFSEPQ
TIQQYILDYLRQNSWENVLSPKQYAFLSYHHRATTQQTRHLADRLLQDYA
STPNLALPPLSITLQKVKNWSSQYKHLSPLSLEELQDFSLRFKQSDLPID
RELPDFVKQFETDPNSLDILFFPGMVQKFQEENRNKKKLGPPFSPLDPFL
KDWLLIAQPFCQKEPIFHTLLKSVQQHLKTYCAQSYSHDESIATLESLLA
QNDHVVSQLRKQFQLVLIDEFQDTDKRQWKIFSKLFASPDYSGSLFLIGD
PKQSIYEWRNADLPTYLQAKNSFPKESQLILDTNYRSTPQLMQALNHLFS
LPSPFLETPQTILYHPLQSKGSASTSYSEFRPIHFFTTQDSQEEALWISK
TASYLRSTFAIPFGNMAVLVQDYPQALKLITHSTIPMAYCKEKRIFDRTE
SPYLLILLLEALLYPENQQKIQAILLSRFFHLSATDIHQHLKIFSSLFFM
LNTYLHQYSLLATFYKLMGETVFSQTIGETLLQTPLGDIIFQELEELCLY
LDKTTENPHHKLFHLINILDTGKYDEELSFSSQSNDDNVLKITTVHSSKG
LEYDVVFCSSLNKVKEKSPSVHMREMYVACTRAKKFLFIPFSSIEKRLQS
NKKVSALANYANITQHDNIPHLVETLTASHPEFFSSGTQPPESNISIFSE
PLPEQEFFSLPILSSQPIYSFSSTTESQYFTEPFQEISSSSLFPGGSLTG
TLIHKLLESLSGNFNASLEEITHKAQTLLKNTILEGFESIISEKIYTAFS
TKLPFVSGSFALKDVHPYNIRVEETFLLQENGELWQGIVDLFFEHNNRFF
IIDWKTSFLGDEPSLYSPDKLLLYIQRQGLDKQGVLYKRAAKKFLHQFNS
SLQIEMAFVFIRGIDDKGNGFLQPSP
>gid:861241  TCA01  virulence plasmid integrase pGP7-D
MNSKFYHRSRLFLTFGEASEIWLSTLSPLTRKNYASGIKFLVSLKVLDLT
KTLDNAISFDHSESLFKIKSLTIFNGKPVSEASKQARAACYISFTKFLYR
LTKGYINPAIPLKDFGNTTFFKIRDRVKTVSISKKEWTVFFEALRLVSYR
DYLIGKLIVQGIRKLDEILSLCMEDLFFASNQISFRIKKRQNKEINIPIT
FPFSLMKELKDYVGGRNGRVFISEDGSPIATSQVVHNFKIAALRSAMTTK
ITPRVLRASALIHLKQMGLRDEEIMRVSCLSSKQSLCSYVCSGGNSSVAN
IPTIL
>gid:861242  TCA02  virulence plasmid integrase pGP8-D
MRLGYITRNFVGKGILSLQQEMPLEYIGKSYQEVLKIRQESYWKRMRSFS
LFEVIMHWTASLNQHTCRSYRGSFLALEKIGLLSLDMNLQEFSLLNHNLI
LDAIKKIPSSKASWTEGTKQVRAASYISLTRFLNRMTQGIVSIAQPSKQE
NSRTFFKTREIVKTNAMNRLQTASFLKELKKINPRDWLIAQTMLQGGKRS
SEVLSLEIDQICFQQATISFSQLKNRQTEKRIIITYPQKFMHALREYIGP
RRGLVFVTSSGKMVGLRQIARTFSQAGLQASIPFKITPHVLRATAVTEYK
RLGCSDSDIMKVTGHTTAKMVFAYDKSSREDNASKKMALI
>gid:861243  TCA03  virulence plasmid helicase pGP1-D
MKTNSEIENRMQDIEYALLGKALVFEDCTEYILRQLVNYEFKCSRHKNIF
IVFKHLKDNALPITVDSAWEELLRRRVKDIDKSYLGIMLHDAMFNDKLRP
ISHTVLLDDLSVCSAEENLTNFIFRSFNEYNENPLRRSPFLLLDRIKDRL
DRTIAKTFSTRSVRGRSVYDIFSQAELGVLARIKKRRAAYSENNDSFYDG
LPTGYQDIDSKGVILANGNFVIIAARPSIGKTALAIDIAINIAIHQRRRV
GFLSLEMSAGQIVERIISNLTGVSGEKLQRGSLSEEEIFCIEEAGNTIRD
SHLYICSDNQYKLNLIANQIRLLKRDDRVDVIFIDYLQLINSSVGENRQN
EIADISRTLRGLAAELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQIE
QDADVILFINRKETSPNCEITVGKNRHGSVFSTVLQFDPKTSKFSAIKKV
W
>TC0521 dnaA-1, chromosomal replication initiator protein DnaA
MRAWEEFLLLQEKEIGTDTVNKWLRSLKVLCFDACNLYLEAKDSFQVTWF
EEHIRHKVKANLINNNGKPIRVRVTSLDKSTPFKESQIQQEKTAYFTMQY
GDIDPQMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPES
SGKTHLMQAAVGILREAGVKTLYVSSQLFTEHLVSAIRSGEMQRFRAFYR
NVEALFIEDIEVLSGKGATQEEFFHTFNSLHTEGKLIVISSIFAPGDLKA
MEERLISRFEWGIAVPVSPLTREGLKSFLERRIEQLNIRIEETALDFLIQ
ALSSHIKSLLHALTTLAKRVAYKKLSHQLLYQGDVEALLQDVLQAAEHIR
LTPSGIVRATAQYYGVSPENILGRSQSREYVLPRQVAMFLCRQKLSLSYV
KIGEVFSRDHSTVISSIRAISQKLDEDDRESDVSCGVQELTKRLSSAYQS
LDLIVD
>TC0547 dnaA-2, chromosomal replication initiator protein DnaA
MLTCNDCSTWEQFVNYIKTRCSKTAFENWIAPIQVLEESREKIRLEIPNI
FVQSYLLDNYKKDLCSFVPLDAEGNPALEFVVSEIKRSSPQIAASVTKPA
VEVSEENKDFQLKLNGAYRFDNFIEGPSNQFVKSAALGIAARPGRSYNPL
FIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAFINDLVHHLRVKS
IDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHLSKQIVVTS
DKPPGQLKLSERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPN
EIAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRT
PSKQKVSVESILKSVATVFQVKIQDLKGTSRAKNVPLARQVAMYLAKTLI
TDSLVAIGAAFGKTHSTVLYACKTIEQKIEKDALLKNQISLCKNNIAIDS
PQHFV
>TC0784 dnaB, replicative DNA helicase
MATQTKKPHSPQLLSLPNSKESEMIVLGCMLTNVNHLNLAANLLQEEDFY
FLEHRIIFRVLQDAFKSDRPMDPHLTGEELKRRDQLNVIGGASYLITLSE
FAGTSAYIEEYADIIRSKSILRKMIQAAKDIEKKAAEEPRDVTTALDDAQ
NLLFRISQTTNFAPYVLVSDKLKGLSSTKDKSFLLALQERQEAFQASSHD
ARIPTLSGFPTHFLDLDRMLNGFSPSNLIILAARPAMGKTALALNIVENF
CFESRLPVGIFSLEMTVDQLIHRIICSRSEVEAKKISVGDISGRDFQRVV
SVVREMEEHTLLIDDYPGLKITDLRARARRMKESYDIQFLVIDYLQLISS
SGNLRNSDSRNQEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRP
LMSDLRESGSIEQDADQIMFLLRREYYDPNDKPGTAELIVAKNRHGSIGS
VQLVFEKDFARFRNYAGCEFPG
>TC0832 dnaE, DNA polymerase III, alpha subunit
MTWIPLHCHSQYSILDATCSIKKFVAKAVEYHIPALALTDHGNLFGAVDF
YKTCKQNAIKPIIGCELYVAPSSRFDKKKERKSQVANHLILLCKDEEGYR
NLCLLSSLAYTEGFYYFPRIDRELLKQHSKGLICLSACLSGSIAQAALES
EEALEKDLLWYQDLFQEDFFSEVQLHKSSEEKIALFEEEWLRQNYYQFIE
KQLKVKDAVLTVSKRLGISSVATNDIHYLDPDDWLAHEILLNVQSREPIR
TAKQNTYVPNPKRKTYPSREFYFKSPQEMAELFADHPETISNTLIVADRC
NLELDFVTKHYPIYVPEDLQKKGSYSEEERYNASSAFLEQLCEQGLKTKY
TPELLGHIAQKFPEKDPLTVVKERLSLESTIIISKGMCDYLLIVWDIINW
AKDHGIPVGPGRGSGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYP
DIDIDICMIGREKVINYAIERHGKENVAQIITFGTMKAKMAIKDVGRTLD
TPLSKVNLIAKKIPDLNATIASALESDPDLRQLYIDDAEAAEIIDMAKKL
EGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVESVGM
LKVDFLGLKTLTSIHVATKAIYKKTGILLQAATLPLNDRNTFSLLHQGKT
MGIFQMESRGMQELAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHG
KENIEYDHPLMEPILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAM
GKKDHEQMVKEREKFCSRASANGIDPSIATTIFDKMEKFASYGFNKSHAA
AYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVGKLIQEAHSMNIPVL
PPDINESGQDFEATQEGIRFSLGAVKGVGVSIVDSIVEEREKNGPYRSLQ
DFVQRSDFKKVTKKQLESLVDAGSFNCFEPNKDLAIAILNDLYDTFSREK
KEAATGVLTFFSLNSMTKDPVKVTISPENIVRRSDKELLKREKELLGVYL
TAHPMDAVKHLLPFLSVVQSKDFEGLPHGSVVRTVFLIDKVTTKISSVEH
KKFALLQVSDEEDSYELPIWSDMYAEYQDLLEEDRLIYAILTIDRRSDSL
RLSCRWMRDLSSVNDTVITECDEVYDRLKNQKIYSSTKKSTGGQSQAMVK
KEEPKAIPPVTISLDLNRLRHSHLFTLKGLIRKYSGSRALSLVFTKDNQR
IASISPDSDFFVTEDISAFLQEIETTDIPARILATAV
>TC0175 dnaG, DNA primase
MYYTEESLETLKHSIDIVSVLGEYVHLKRSGADYKACCPFHDEKTPSFIV
YPTRGHYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVIKTK
TKESSGQDSKECLRRINKEAERFFQYCLLCLPEGGEALSYLYKRGFSLDT
IDRFQIGYAPEQRVFVRAMEERGISVKQLEWAGYLSKDWFLFAQRIMFPI
QDSLGYTIGFSSRRFKEGGKGGKYINSPETLLFKKSRVLYGLQFSRKRIA
KEKRVILVEGQADCLQMIDFGFNCTLAAQGTSFTETHVKELVKLGVSKAY
LLFDGDAAGEKASLRVGDLCQVAGIAVIVCRLPSGQDPDSFLMQRGPEEL
RELLDRGEDYLSFLVWHKIRSYEQFTPREKARVVEEVIQQVQHWGSPIMI
HEYLRQLASLVKVPEAAVLSYLSSIKSATEDKGKKADAKEVCPDPEATAV
AYKGGKASKKISPRMILEADVIRCLLFAKPEEEFVPATVRHYLSPEEFHC
IEYRSIFVMAMNHYNEKHMLPSMDDMMALVWGTEAMTLLVDRRINTELMR
DIVVQAIQKLLDKHWRDRKRNFCHQMGKELDSLQEYVRLSEERIKVSLVS
>TC0347 dnaN, DNA polymerase III, beta subunit
MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLT
VSTRCVVKAKVYESGSVTIPSRRFFQLIRELTEANIEVAANSGEMATITS
GSSCFRLLSMGKEDFPMLPDMQNALRFTLDSEQLKDMFQRTSFAVSREES
RYVLTGVLLSISNGTMTVVGTDGKRLAKIDTNISLDPSFSGDYIIPIKAV
EEIIRMASEDVQSTIFLDQTKIAVECGNTLLVTKLLSGEFPDFSPVISTQ
SSVQLNLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTANCTKVGE
GKVSMAVNYTGETLEIAFNPFFFLDILKHSRDELVQLGISDSYNPGIITD
STRSLFVIMPMRLHDD
>TC0611 dnaZ, DNA polymerase III, gamma subunit
MTSYQVSSRRHRPNTFSEILGQDMVVSILKNSLRLNRSAHAYIFSGIRGT
GKTTLARVFAKALNCQSPTENQEPCNQCAICKEISLGTSMDVMEIDGASH
RGIEDIRQINETVLFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPA
HVKFFLATTEIAKIPNTISSRCQKMLLKRIPEETIIDKLTTIAKLGKIEA
SREALLPIAKAAQGSLRDAESLYDYVVGLFPESFTPEDTAKALGILSDDT
LYQIAEAITTQNYEQALSPVSDAMHMGVAPAHFLQDLTLLFRSLLLKQHS
QKFDSIAVKYSSESLLEILDFLGESARHVNLALFEKTFLETVIIRLLRIY
SRPTLSQLVSQIKQPAQSPLRPIPSSPVLDPGPSPTKSIVKEEVKALPQP
VEAKFSQGSLLTPPPSQPKKETLNQEVSAPSSSTPSCSEAAAIDTLLQFA
VVEFSGVLTKEPKHG
>TC0031 gyrA-1, DNA gyrase, subunit A
MSNISDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMDDGK
MHKVANIAGRTMALHPHGDAPIVEALVVLANKGFLIETQGNFGNPLTGDP
HAAARYIEARLSPLAKEVLFNTDLMTFHDSYDGREQEPDILAAKIPLLLL
HGVDGIAVGMTTKIFPHNFCDLLKAQIAILNDQPFSLFPDFASGGSMDAS
DYQDGLGSIVLRATIDIVNDKTLLIKEICPSTTTETLIRSIENAAKRGII
KIDSIQDFSTDLPHIEIKLPKGVHAKDLLQPLYAHTECQVVLTSRPTAIY
QGKPWETSVSEILRLQTETLQSYLKKELLILEDSLTREHYHKTLEYLFIK
HKLYDTVRAMLSKRKTSPSASVIHNAVTDALAPFLGTLPTPDKQATTQLA
SLTIKKILCFDENAYEKELLSLEKKRCNVQKDLGQLKKYTILYIKKLLDA
YKHLGHRKTKIEKFEDALLGKSIHKKAKEASTIDQEESLV
>TC0461 gyrA-2, DNA gyrase, subunit A
MLNKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILY
AMKQLNLTPGAKHRKCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRY
PLVDGQGNFGSIDGDPAAAMRYTEARLTHSSIFLLEDLDKDTVDMVPNYD
ETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELIEATLLVLAN
PQTSIEEILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLRARIHVEE
NSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDG
IRVVLELKKGESSEVIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRM
ISAWIRHRMDVIRRRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRES
SNKEHAKQQLVELFGFSEAQSLAILELRLYQLTGLEIDKVQKEYNELLEK
IAYYRRVLAEEELVKDIIREELQELHKVHKTPRRTTIEMDAGDVRDIEDI
IADESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVY
SASTKDYLLIFTNMGQCYWLKVWQLPEGERRAKGKPIINFLEGIRPGEQV
AAVLNVKRFEQGEYLLLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDE
LIAARHIVNDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEE
DFVVSCQVVTDDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQR
NGDVLGAISVTDFDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLRE
GDTLVAMEKLSVNTESGETEESVSIQVGHAVEE
>TC0032 gyrB-1, DNA gyrase, subunit B
MRKKTAYSEASIISLASLDHIRLRAGMYIGRLGDGSQSEDGVYTLFKEVV
DNAIDEFVMGHGHTIFITGDSQKLSIRDEGRGIPLGKVIDCVSKINTGAK
YNQDVFHFSVGLNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLHT
EQGDTQDADGTEISFSPDKELFENFSFHDEFLKKKIRQYTYLHPGLTILY
NGETFVSKLGLADLFEEEIQTPLLYPPIAFQHPDLSFLFSHTETSSEQYF
SFVNGQETTDGGTHLIAFKEGVVKGINEFFKKNFSAQDIRDGIAGCIAIK
IASPIFESQTKNKLGNTNIRADLAKRVKEAVILTLKKHPSSADRIQEKIK
LNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKFHLTDNSLYGNNSSIF
ITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDELFYLA
TALGLHKNSLQNLRYNHIILATDADVDGMHIRNLMITFFLKTFLPVVEQN
HLFILETPLFKVRYKDETFYCYSEEEKLSTIERLGKKESSLEITRFKGLG
EISPKEFKSFIGPDMRLTPVSPPNADTLDALLQFYMGKNTKERKHFIIEN
LVTNL
>TC0462 gyrB-2, DNA gyrase, subunit B
MDAQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSI
DEAMAGFCTEVVVRILEDGGISVSDNGRGIPVQIHEKESAKQGREISALE
VVLTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEKFIANVFKDGQAYS
MEFSKGAPLTALQVLGSTDKRGTEILFYPDPTVFSTCVFDRAILMKRLRE
LAFLNRGITIIFEDDRDAGFDKVTFFYEGGIQSFVSYLNQNKESLFPTPI
YIQGSKRGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFST
ALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEGQTK
QKLGNSDVGSVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKR
ARELTIRKSALDSARLPGKLVDCLEKDPEKCEMYIVEGDSAGGSAKQGRD
RRFQAILPIRGKILNVEKARLQKIFQNQEIGSIIAALGCGIGTDNFNLSK
LRYKRVIIMTDADVDGSHIRTLLLTFFYRHMSALIENGCVYIAQPPLYRV
SKKKDFRYILSEKEMDGYLLNLGTRESRVVFDDTARELEGTALESFVNLI
LEVESFIIALEKRAIPFSEFLDMFRDGAYPLYYYPPESGKQGGNYLYSNE
EKEAAVAANEEAAARIIELYKASAFEEIQHNLNEYGYDIRHYLHPKGTGI
TVSTEDSKTPNYTCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWD
TTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIRMS
NLDI
>TC0423 lig, DNA ligase
MRALSQDYYIALCTELIEHDRRYYVLDRPTISDYSYDMKMRELQKIEAQH
PEWKVPWSPTIYLGDRPSGQFPVVPHSHPMVSIANVYSLEELEEFFSRTE
KLLGYFPTYSLELKIDGIAVAIRYENRTFAQALSRGNGVKGEDITANVST
IRSLPMTLPQDAPEEVEVRGEVFLSYQAFEKLNICQREQGKLEFANPRNA
AGGTLKLLSSREAAKRNLDLSIYGLITNREEHSHFENLGLCAHWGFPIAG
MPKQCRTKEEVIERIREVEGMRSRLPMAIDGVVVKVDSVAEQHRLGLTSK
HYRWAIAYKYAPERAETILQDITVQVGKTGILTPVAELTPVLLSGSRVSR
ASLYNEDEIEKKDIRIGDSVYVEKGGEIIPKIVGINLAKRSPDSKPWKMP
SLCPMCHNPVIKERVSVRCTNPLCLGGMLEKICFFASKGALNIDHLGEKV
IAKLFEMGLIRSCSDVFALTENDLKQVPGFKDRSVHNLLASIAGAKEVTL
DRFLTALSIPFVGSSGAIALADHFGTLDKVMKASLDELLSIEGIGQKVAA
SIIDFFSKTENVEEICRMQELGVRILPKQVDRWAPLQGKIFVLTGTLQEM
TRLQAEERIRSLGGKISSSVSKNTYAVVVGREAGSKLKKAQELGVQVLEE
SDLLKILNQN
>TC0864 mutL, DNA mismatch repair protein MutL
MSLSSSRIRLLDSATVNQIAAGEVIENAASVVKELIENALDAGADEISIE
TLGGGKGQIVVRDNGIGMDADEVAVAIQRHATSKISHFADIFSLASFGFR
GEALPAIASISKMEIHTAKVNGLGSKTLIEKGEPVCCEACPRQPGTTISV
NSLFYNVPMRQSFQKSPQMDRLAIRRLLENSILSTEGIKWTWISERRQEL
NIAKNQGFTERVALVMGEAFVNEAFLIDKRQNELHLTGFLGSPSMHRSTR
QGQRLFINNRAVESSFISRKVAEAYAWMLPAQRYPAFVLKLSVPPMWCDF
NVHPQKTEVRLLQEGQIGALLVEAISEVLLHRSPSLEEKMVEPTMESPLI
ENGGLEIPSIRPVAISTPLSCPNFLQQSFVETEANRALCKEQENLALPII
ERVRFLASLGKVILVEDSEGVHALFVQAARKHLFYISLLSKRSDSLLACQ
MFLVPPTVQMTKLEADFLQTRLESLAAQGIELCRISPDSFAIESAPPFIQ
EEELKEWIISLAHEGAFQVNESFEQLVENTVQKLAFSKNTRAFDHSWINV
LWQIGKPEKAFDGETIRRLVLEEDFM
>TC0174 mutS, DNA mismatch repair protein MutS
MTQKLTPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALVLAQNLDITL
TQRQNIPMSGIPAAYLDGYVDRLVSRGFKIAIAEQADNSEGGKGLVPRTI
NRLITPGALLSSSLLPEKANNYIIAISQVGSLYGLSCLDLSTGTFLVAEY
DNTKDLIEAVYRLAPTELLSHAKFYQKNEPVVKQLQQHLRITLSEHVSWA
FEYQSATKKLYTCFQVSSLDGFGLQGLVPAINAAGALLSYIQDKLLLPIS
HLSIPKIYGQHKHLLIDKASQTNLELLSAIHGEHGKGSLLQVMERTSTPM
GGRLLRNTLVNPFYDLKEITLRQDSVEFFLKQEPLRKTLKRHLSCVRDLE
RLATKISTTLASPKDIGMLRDSLLSCMHIAHDLQSYTLPEFLTNKCLISS
SLKSLIEALSTDLLQELPLKVSEGNIFADHYHQDLLRLRNIKTNSKSWIL
EYQERIRQETGIKKLKVCYAQALGYYIEVASSFAPQLPKEFIRRQSRLHA
ERFTTQELQQFQDEVFSVEDKLQTLETKLFKELCCYILQHRDLILELSTT
IADLDYVISLAELAAEYDYRRPLVDHSDALSITKGMHPVALTLLDRGTFI
PNDTIMHSAQTRMILLTGPNMAGKSTYIRQIALLVIMAQMGSFIPARSAH
IGIIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVILDEVG
RGTSTYDGLAIAQAVVEFLLFTEGKKAKTLFATHYKELTELELHCQHVEN
FHAVVKENGGQPVFMYEIAKGHSKKSFGIHVAKLAGFPLSVVSRAQQILH
QFEGPDLRPEPEKAQQLVMF
>TC0383 mutY, A/G-specific adenine glycosylase
MIRTAFSQDNDRFPLEAFRLWFLECKRSFPWRESPTPYRVWVSEVMLQQT
RAEVVVPYFLRWMERFPSIQDLAHAEESEVVRLWEGLGYYSRARNLLSGA
RVITELFQGEIPQDPLLLNSIKGIGPYTANAILAFAFKQKKAAVDGNVLR
VMSRLFAINQSIDRIKTRQEITELCETLLPDYEPEVIAEAFIELGARICN
RKPVCEQCPLRSFCKAYQEGTVLQYPVKNSRSAITPLFRAVVIIVSKDRV
LMTKREDHEIMAGLYEFPYYQLSQEDCCDVEKITDLVRQDFGDSIRFVGG
LPSQKQIFTRYRVSLFPYIFHIKTLSSEQNSYTLVELKNLPSSSGHRRIK
EDFLSEYCKFPEKMAGYSGDQ
>TC0914 nfo, endonuclease IV
MFVLPPPQEPLLGAHTSAAGGLHNALYEGRDIGATTIQLFTANQRQWKRR
SLTQNMIEQFQTALDETSLSYIMSHAGYLNNPGAPNPEILEKTRICMYQE
IADCIALGISFVNFHPGAALSDSKESCLDRAITSFSQMAPLFETNPPLVV
LLETTAGQGSLIGSSFEELAYLIQGIKAHIPVGVCLDTCHIFAAGYDISS
PEGWEQVLKHFDEVIGLSFLRAIHLNDSIFPLGKNKDRHAPIGEGCIGSE
SFCFLMRDERTRKLPKYLETPGGPDLWTKEIRYLQKVS
>TC0069 nth, endonuclease III
MNKLRVPSKRAFILNTLNQLFPNPEPSLKGWHSPFQLLIAILLSGNSTDK
VVNTVIPALFAKAPDAQSMSKLPLSEIYSLIAPCGLGERKSVYIHELSCI
LVERYAQEPPRSLSELTKLPGVGRKTASVFLSIYYGENTFPVDTHILRLA
HRWKLSTKRSPSAAEKDLVAFFGKTNSPKLHLQLIYYAREYCPALHHKID
ACPICSFLNS
>TC0898 pcrA, ATP-dependent helicase PcrA
MLTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVSHRILYLIEEAQLDP
SQILAITFTNKAAKELNERVLTQCNFPDYRGIPMVSTFHSLGVYILRRSI
QLLDRQSNFAIYDQSDSEKLIKQCLRKLNLDNKLCNAMQFTISQAKNRLQ
DPEDLDSREYPDPARAVYTEYQEQLRAANALDFDDLLFLTEKLLRIPEIQ
QEYSNLWKALLIDEYQDTNHAQYLIAKRLAASHNNIFVVGDPDQSIYSWR
GANISNILNFEQDYPKALVVRLEENYRSCGTILEAANALIQNNSARLDKT
LRSVKGPGDKIFCFTGKNDRDEAEQVLEEISNLHSYKDIPLSHICILYRT
NFQSQSFEAALLKRGYPYEIIGGISFYKRKEIQDILAFLRLFSNNYDMAA
FERTIGLKKCGIGATTLSSLMSYAKSMDLPILQACWDVLEKKPIRLTKKQ
QQGLFSYLTHFHQMEKLYGNCDLHEFINETIRITDYLAILKEDPETYDDR
KNNLEQLLAETQIWGKSSENLPNFLEDLALKSSADETASSHDRLKLMTIH
NSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCYVGITRAQEYL
YLSRAKTRFLWGTERTMVPSRFISELPRALLKFV
>TC0780 polA, DNA polymerase I
MKKLFILDASGFIFRAYFALPEMRGPNGGSTQAVFGFIRSLDKLVNDLSP
EYMVAVFDGPNNKQSRQELYADYKSNRDRKFEDLPEQIALVKQYCELIGI
PCLEKEGVEADDVIASVAKKAVAEGFEVCICTADKDLLQLVNSQVSVFNP
WKEQEIKYNEVLLQFGVAPDQIADYLALVGDSSDNIPGVVGCGPKKAQAF
LKEFQSVEDLVANTQRLSSKNKQMIEEQIETLLLSKRLATLHTDLMIPLK
TEEMSFSSQTADVAQLNAFYLQHGFKALVKHAPTSETSISLQVVKDPSVL
QMVLKNLKGREVGYCVAYTGEHLPSLRLHGVALSGGDEVFYIEISGDQEI
ALLKAFFADATTKFFGYRTKRDNHALKNHGIDVHVTADLVLAQHLVNGGA
KISFQTLLVESGHIQEAAFFAKEWGASSLPVQNLPQNPAQYFGIFVSRLP
SIKNYLFEKLEEKGLKSIFKNVEQPLEEILFAMECAGMPLDSEGLLVLDR
DLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIKPVDKAKSTKA
EVLEALEGSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQ
VGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKENDYFLAADYSQVE
LRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAV
NFGLAYGQQAYGLSKNLKISVNEAQGLIDAYFARYPQASEFITHTIEQAS
KEQKVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAML
NISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMSLS
VPLVVNVLIGKNWAEC
>TC0159 priA, primosomal protein N`
MDPTHQSFRLYAEVLVSANINKILDYGIPAELEDRVTIGSVVKVPLQRKV
TNDKYKFAIVLKIKDSSDFANVIQPIAGISYEGVTLPKDLIDLIFWISQY
YFCPLGSTLSLFLPTVYSQTHSTKHQNNVFLGQNAERTQEIIKSIEDPHQ
IAVLRKLLKTTKPLTPKELIKKTDISTKILDSLSKQGFIRIVDSANLEIQ
DEQLQYFLPEPPTLTQEQIEAINTISQSLITTKFQTCLLFGVTGSGKTEV
YLQVIRKARSLGKSVILLVPEVALTIQTLSFFKMHFGAEVGVLHYKLSES
ERTQTWHKAARGLINIIIGPRSAIFCPMQNLGLIIVDEEHDGAYKQSDLP
PFYQARDVAVMRGKFTNATVILGSATPSLESYTNALSKKYTLSVLSKRAS
TSIPTKVSLIDMNREMEKTRKKILFSPTVIRSIEQRLAVGEQTIIFFNRR
GFHTNVSCSSCKYTLKCPHCDMILTFHKTERILLCHLCNTRLSKPITSCP
QCHGTMTLQYRGAGTEKIEALLQDFFPTVRTIRLDSDTTRYRGSHDALIK
QFATGKADILIGTQMIAKGMHFPAVTLSVVLSGDSGLYIPDFRAAEQVFQ
LITQVTGRSGRSYLPGEVLIQTFLPQNSTISHALAQDFPAFYKEEILGRK
ACNYPPFTRLIRCIFLGKCAEYTLQEAQRMHELIKQNLDAQASLMDISPC
GHFKVKDLFHYQFLIKTRNILTVNKQLQDAFSAAKLSSKVRCIVDIDPIT
TFF
>TC0019 recA, recA protein
MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDL
ALGIGGVPKGRIIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHAL
DPNYAALIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAAL
VPKSELEGEIGDVHVGLQARMMSQALRKLTATLARTNTCAIFINQIREKI
GVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGGENFDIGNRIKVKVAK
NKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRKL
GQGREAVREELKRNKELFQELERRIYESVQASSSQALASACLDQEAREVA
EAAK
>TC0302 recD, exodeoxyribonuclease V, alpha subunit
MGCEEKLSGTLELILPEDSLSNQMGYAFLRVPYKNSLVTICGNSSLSLFK
IGASVDLTGYWSVDASGALVFRFTTAKTYSPSLGIIAYLTSQIKGVGPKL
AQKIIATFGEETLSVLDSCPSKLVEVDGISLARCEDFSRQLHEQKDLRNA
LLFLQRHGIAIHYGLRLYKKYQNQTIDKVCQDPFLLAKEMYGVGFKTADL
IASCLGVPLNSPNRIVAGIQYSLDELQEEGHTCYPLNDFIVLVEKLLNED
TPEKIVRKEEILTQVHFLSRQKAVYIKELEQDSYIWSRQLFLAEQQIAID
IRRLLFSSKRIQPINTQEAILEVENLLDLKLEDKQKEALYASSSQKIHII
SGGPGTGKSTITRAILSIFEKISSPQKIILAAPTGKAAKRMTEITGKRTQ
TIHSLLQYDFKTLSFRKNHEDPIDCDLVIIDESGMIDTILLQRFLAALPD
HAILILIGDVHQLPSVGPGNVLKDLILSNHIEVTYLTKIFRQLQNSNIIT
NAHKVNQGEFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHLVSDFVPKKFG
IFMKDIQVLAPMKKGVLGIFNLNKELKAALNPNKPFIQGKFHSFSTGDRV
MQTRNNYNKEVFNGDIGYIASIDFAKKSLVACVDGRYICYSQTELNDLTP
AYATSIHKYQGSEASCVILPIHTSHYVMLYRNLLYTAITRGKKLVILVGT
KKAIAIAVRNDKVQHRCTGLQQSVQTLLNKPIPLFSPTYTICKP
>TC0732 recJ, single-stranded-DNA-specific exonuclease RecJ
MEKDKLSALGQKWTYPKHNEEFLKKIIKELYLHPVIAQVLVSRGFQSVQE
IRDFLYPQFPSLHPASSFLDMEKAVARLLKSKENNEHVMIYGDGDVDGIT
GVTLLVEFLQMLGVKTSYCCSGTLFKQHGEITSLISQMLQDGVSLLITVD
CGITAGREVRSINKQGIDVIVTDHHTPTGKLPHCIATLNPKLDKNSYPNK
ELTGVGVAFKLVCATYEELIKQDASWKDKIDLLHFLDLVSLGTIADVGRL
SGENRILVSYGIKEITKGKRLGLKKLCSLSGVDKSDISSTNLGIRITPKL
NSLGRLADSSQGVKLLLSQDPRTVGTIVSELAIVNQERQRIEAEVLRDVE
RILAANPKLTAQSAIVLASPYWHSRVIPIISARLARTYNKPVAIIALQDG
IGKGSLRTIGAFPLLGVLRKCESFFLSYGGHDFAAGLMIKEEQIEGFRKK
FIHLVNSSLRKDEATLTLPLDVCMDFSQISQDLISSMELLEPFGKGNPSP
VFYTRAIQVRYPKLLSGNHVKLYLNSGERNLEGTAFGQGDKISLLKANWN
MPLDIAYTLRVMKRSVHGAVRLLIQDFRIQAP
>TC0511 recR, recombination protein RecR
MKDMLKYPDYISKLISFLKKLPGIGFKSAEKIAFELLEWDPSQVEAMGLA
MQEFSASHATCPDCFCLKTSKTSSCDFCSESRDSSFLCIVATPKDVFSFE
KSKIFKGRYFVLGNLLSPITGKHLSLEKLNILKQRIEDFAPKEMIIALDA
TLEGDATALFLKQEFSHLPIKISRLALGMPVGLSFDFIDSNTLARAFSGR
NCF
>TC0276 rnhB-1, ribonuclease HII
MIMPTPFVSQLSPSLFTTLREQLEKKGFVISIPPHTVFQGRSSTVSCTVY
QSGKIVVQGKGTQEFVEFFLEPEILHSFSIQNVQQDLRPRIGVDESGKGD
FFGPLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARSIRSLCTC
KVITLFPEKYNALYANFQNLNALLAWTHATIIDDLAPKPTGDVFAISDQF
ASSERVLLQAVRKKRADIELIQRHRAEQDVVVAAASILARDAFLSSMQTL
ESQYQVRLLKGASGKVKQQAKEILRDKGQPVLEKVCKTHFKTFYEVLGST
S
>TC0298 rnhB-2, ribonuclease HII
MKSIVEQELLFREKSVFEDQAIKQGYSRIAGVDEAGRGPLAGPVVAGACI
LPGGKLFLGIDDSKKLSPKQRRYLYELLLEDPEVTCGVGVVSVERIDEIN
ILEATKEAMVQAIASLRSTPDFLLVDGLFLPHEIPCLKIIKGDSRSVSIA
AASIIAKEYRDELMRKLHSEYPEYGFDKHKGYGTVAHLQALKQFGPCVYH
RKSFSPVKESIREGICQ
>TC0788 ruvA, Holliday junction DNA helicase RuvA
MYEYIKGKLTHTDEAYVVIESFGIGYSIMLSERFLVDLRELMHQEVLIYV
HSVIRETEHSLYGFSSRAERECFRLLISFSGIGPKTGLAILNMFPLQELC
SVARLENVKAIASVPGIGKKTAEKLMVDLKQKLPALMPLYLEEPVVASSS
TTTSFKEGIGALMNLGFSRLAADRMMTEAVKELSEDASVAELLPVALRKG
>TC0310 ruvB, Holliday junction DNA helicase RuvB
MTHKISVLHQDKKFDFSLRPKKLTEFYGQKQLKERLDLFLRAAVQRKEVP
GHCLFYGPPGLGKTSLAHIMANTVGKGLVIASGPQLLKPSDLIGLLTGLQ
EGDVFFIDEIHRMGKTAEEYLYPAMEDFKVDITLDSGPGARSVRLDLAPF
TLVGATTRAGMLSEPLRTRFAFTGRVDYYNEEDLVAILSRSAQLLSIEAN
KETLLEIARRARGTPRLANNLLRWVRDFAQMREGNCINSVVAEKALAMLL
IDNLGLNEIDIKLLSVMIDFYQGGPVGMKTLAMAVGEDVRTLEDMYEPFL
ILKGLVQRTARGRVATPLAYEHLNRNPKDK
>TC0789 ruvC, Holliday junction resolvase
MADLIMGIDPGTLVCGYAFIRVENRYQIQPHSFGKIKLSQKQALSHRYRQ
LFTEISTILQREAPKAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDI
SVFEYAPNTAKKAAVGKGNASKQQVQLMVSKLLNIQDLLADDNEDIADAF
ALAMCHAHLAPYQDLKKSLL
>TC0314 ssb, single-strand binding protein
MVFMLFGYLVGFLAADPEERMTSGGKRVVVLRLGVKSRVGSKDETVWCRC
NIWNNRYDKMIPYLKKGSSVIVAGELSVESYMGRDGSPQASISVSVDTLK
FNSGSSRPESRGSDEGRQRSNDNVSLGFEGESLDTEIALDKEVYAGFGED
QQYASEDVPF
>TC0124 trcF, transcription-repair coupling factor
MDFDPTSINFSHFSLLKDSKLPSLVENLHSGAKAFIVAKLFKELRRSIVI
ITTPARVDDLFEDLTTLLKESPLEFPTSEIDLSPKLVNIDAVGKRDHILY
SLQKQCAPVVCITTLKALLERTPSPESLLSDHLELKVGEELDPDTLVDLC
KNLGYRHEALAREKGDFAFRGGIVDIFPLSSSEPFRIEFWGDRISSIRSY
NPSDQLSTGKISQITISSATAIIPTDKLSHSLLDYFETFPLCIFDEVSSL
EDNFSDIAGILSSLPKRFIPIQDLCRRILRESVPLFFEENLFPNLLTHKD
TGCALEVFHEKISVQRVSLPFIYPHALIETSHEQNPLLAFLKTFQDFCSD
RTLSLALYSSNTKSLKEAHDLTASFIKKPQIYDCPKALSSSFALVESGFA
AISLSEFAANKVLRRQKQRNYFSSTTEEVYVPVPGETVVHLHNGIGKFIG
IEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGASEKAPDLHH
LNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPTHGEEVIKFA
ESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVK
AVCDGQKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKAMK
KTLEDVAQGRIDILIGTHKVINKSIEFHNPGLLIIDEEQRFGVKAKDALK
ERYPTIDCLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEH
TEETLSAAIRHELLRGGQVYVIHNRIEGIFRLGETIRTLIPEARIGVAHG
QMHSDELANIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADKFGM
ADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPASKRLEALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAVGFNLYCKLLKKAVAALKHKKKPML
FHDDVRIEFPYHSRIPEDYIDLASMRIEFYQKIGNAESKEELEAIEEELR
DRFGPLPEEVYWLFALAQIRLIALEYHLSSIKGTGNALYIQQYHDKEKQV
QKTLPYSLSPTPTLLVKEVQESIEKAFPKK
>TC0897 ung, uracil-DNA glycosylase
MHEAFTIEQLPQSWQEQLKDEWSQPYWSQLLTFLKSEYANATVYPKKEHV
FSALRSTPFDQVKVVILGQDPYHGEGQAHGLSFSVPKGQALPPSLRNIFQ
ELQADLGIRNETGCLQTWADQGVLLLNTVLTVRAGEAFSHAGRGWEHFTD
AIVTKLIQNRTHIIFVLWGSAARKKCDLLFQTKHQHAILACPHPSPLAAH
RGFFGCCHFSKINYLLKKQGKPMINWKIA
>TC0610 uvrA, excinuclease ABC, subunit A
MPSIVRLSGITVRNLKNVTVEFCPREIVLFTGVSGSGKSSLAFNTIYAAG
RKRYITTLPSFFATRIHSLPDPAVKKVEGLSPTVAVKQNFFAQHVHATVG
STTEINSYLALLFSLDGQAYDPITLRPLTLYSKEKILAEIAAIPDGTQLT
LLAPLPAGDILRVRECLRQGFTKILIDGEISPIHKFLATGVPVPSQLIID
TLIKNASNTPRLKVSLFTTLDIGHGECCLHFDNQKRVFSTQTTLPETQNT
YTPLSPDLFSSHSHKDRCPQCHGSGIFVSINDPSIIQQNLSIEKNCCPFA
GSCSILLYKTIYQSLADNLGFSLSTPWQDLSPEIQHIFLYGKEGLSLPVK
LFDGTLGKTTQTHKQWKGVLNEIGEKIRFANKPSRYLPKGTSYTECPRCQ
KTGLSDYANAAKWHGKSFADLQQMSLQELFIFLNQLPPKDPAIEEVIQGL
KARLAMLIDLGLPYLSPERSVNTLSGGEQERTALAKHLGAELMGVTYVLD
EPSIGLHPQDTYKLMDVIKKLRDQGNTILLVEHDEQMISLADRVIDVGPG
AGIFGGEVVFNGTPKEFLANSHSLTAQYLRQEQQIPIPAKRQTSLGSITL
SRANKHNLKNLTVSIPLGQLTVVTGVSGSGKSSLINDTLVPCVEEFIEQG
SCPNLAVQGKLSRLVHINRDLPGRSQRSISLTYIKAFDELRQLFAEQPRC
KPLGLTKSHFSFNTPLGACSECGGLGSITAMDNQDSITCPSCSGKRFLPQ
VLEIRYKNKTIADILEMTAYEAESFFLDQPSIHNKIQALCTLGLQYLPLG
RPLYSLSGGEIQRLKLACELSNPVKHPTLYVLDEPTTGLHTHDVKQLIHV
LQSLTDQGHSVVIIEHNMHVVKIADYVLELGPEGGNKGGCLIASCSPEEL
IHKHTPTSLALRPFLSQHQELPHLPDLRQQPPIPAAIIITNAHHHNLKHI
DVSIPRYALTTVTGPSASGKHSLVFDVLHAAGNISYAELFPPYIRQALIK
KTPLPSVDKVIGLSPVIAIEKNSAKNSSHSVASALEISDMLEELFTQIGR
PYSPVSGDLLKEVSPQTIAEELLENYAQGYVTITIPFPPEEDFFSYTQEM
LREGFLKLYANEQLYDLEGPFPDCLESPALVIHHVKILEKNIPSILSSLS
LAFSKSSSIRLHIENYGITTSKTYQLGLQDSLGNSFPSNDNTTHLCPFCH
GNGSLSTFSILPYKNRFAEHTPLSLFTSLFPNQDPTPIYPLLEELGIPSI
ALFQEMDDHSFQKLCLGTLQNPGFDALCTKAMLAHPTTNFPTYLISETPC
NQCQGNGTYTYEHCTRIHDISLSDIYQSDVPFLKKFLLSLGKDLPLVSDI
FQKLELLERVGLSQVILGQEQSSLSDGERYQLLLAKAFSSGLTDVIYLLE
DPLAGIHPKDAPSLLSVIKDLVANHNTVVVTDREGSLSKHADHVIHLGPE
PGPNGGYLLETSAFRDLQPISQSTYISDQIPKLSVSVLTSAIQIDNLSIP
LRSLSTISGVSGSGKTTLLLEGIYKSGCAMLEKDPSLFSEIIFLDSHPQP
ASSRSDISTYFDIAPSLRNFFSSLTQAKALNISASMFSPNTKQGQCSDCW
GLGYQLIDRAFYAMEKRSCPTCGGFRVQPLVQEVVYEGKHFGQLLQSSLN
EVAKDFSFLKKVQKPLQTLIANGLGYLPLGQNMSSLSLSEKIAIKITKYL
FLPPKHPTLFLLDGVATSLDNQQKYTLLSQLKTLVSLGHTVVIIENHPAF
SQYADFLIQMGHKTDKTSSRIIFSGINQSPSLSNKLE
>TC0875 uvrB, excinuclease ABC, subunit B
MTHYHNPLNGRKVLNQQFVLQAPFLPCGDQPEAIRQLSRGILDGIPSQVL
LGTTGSGKTFTMANVIANVNVPTLVLAHNKTLAAQLYQEFKAFFPENAVE
YFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRLSATRSILERRDTL
IVSSISCIYGIGSPDNYSSMALILEVGKEYPRSQLSAQLVRMHYQASASP
QRSAFRERGSVIDIFLAYESDLAVRLEFVNDTLVSIEYTDPLTMIPSHTV
PSVTLYPGSHYVTPEAVREQAIRTIREELEQRLLFFEGRPVEQERLFQRT
THDIEMIKEIGFCKGIENYSRHFTGAAPGEPPTCLLDYFPEDFLLIIDES
HQTLPQLRAMYRGDQSRKQSLVEYGFRLPSAFDNRPLTYEEARRYFRRVV
YVSATPGELEVQESRGHIIEQIIRPTGIPDPLPEIRPATGQIDDLLEEIR
QRLRKDQEKILVVSVTKKLAEDIAAFLAELGIAAAYLHSGIETAERTQIL
TDLRLGTIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC
GRAARNVHGKVIFYADRITPSMDHMLKETERRRQIQLDYNKKHNITPKPI
IKPILANPITKEGAQEDSRPETQSTEDLESSIKQYEEAMYKAAQDFQFDE
AAKYRDLMNAAKRQLLFKQGEDGNSK
>TC0173 uvrC, excinuclease ABC, subunit C
MIGVRIEDFSLKNVSSSPGVYLMKDSQGVVLYVGKAKNLRNRLSSYLQKN
GDSRERIPFLMKRTADIDTIVVSNETEALLLENNLIKKYQPRYNVLLKDD
KTFFCLSISLQHPWPKIEAIRTRALSPSKKKQLLFGPYVSAEACYALLEV
ISHWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGFCSQTEYQETLEKA
ILFLKGEVDTTIANLEEAIKKASQEHKFEHAAALYRTLTLIRQTMAKQHV
EKFQAYDIDVLGLYRKGPLAIISVLSVYSGKLLGARHFTFPENAQEDSSL
FSSFILQYYAENTRIPKQIFVPVSPDSPELPYLLNAAEPPKIRCPKTEYG
KELLALAHKNAAEQAKPLNSITLPYEELQQLFKFSQYPNRIECYDNAHLQ
GEHNVGVYIVFEKGSFSPKQYRTFSITSHGDDLAAFEEVLTRRFRSLTTE
LPDLIVIDGGRNQFRRAQHILEKLNLTGIAVVSIAKESGNHSRGLQQEKL
FCEAFPQGILLNPTSEILQFFQLLRDEAHRFAINRYRNKHSKAILTTKKI
PGIGKTKTTHLLQKFKSWKRILSASEEELKTVQGLTKKDIQRIQEEGKRA
E
>TC0605 xseA, exodeoxyribonuclease, large subunit
MSITSPPVEVSVLTDSIKNLLEKNFLRVVVKGELSNVSLQTSGHLYFAIK
DSKAVLNGAFFHFRSKYFDRRPKDGDYVILHGKLTVYAPRGQYQIVAYAL
TFSGEGNLLQQFEERKQRLAAEGYFDPKRKRQIPSEARTIGVITSPTGAV
IQDILRVLSRRCHQFQVILYPVTVQGPTAAQEISRAIQVFNQENIKIDTL
IVARGGGSIEDLWAFNEEILVKAIAASSIPIISAVGHETDFTLCDFAADV
RAPTPSAAAEIVCKSSEQYHQELQNLLRHLSSHSRQFIAAKKNLLSHWKK
HLATADFYHTAQQTLDYTRLSLERTLDAKLEHYKQHLAQYKRWLKSDILI
RVEKHLSNLNQALESAIKNKLYSNKVSLHQLYTSRFKNELPNLQHRTQHA
KHLLNQLSRRLHFVMANSQETKLQRFARLQEEFSFMIQHLLTKAKERCQS
VQEQMASLNPKNVLKRGFAQLFDFNKHSVIISAESLKQSDLVRVCLQDGE
AVLSVKEVWLNNDKKG
>TC0606 xseB, exodeoxyribonuclease, small subunit
MTKKAKNVEKVPFEDAMKRLEEIIDLMNQPTTALEASLALYEEADQLMRI
CESRIQEVEARIKQLSDQRSES