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2024-05-20 01:22:42

Gene list

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COG category: Replication, recombination and repair
Organism: Bacteroides fragilis YCH46, YCH46

Number of genes found: 240

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bacteroides fragilis YCH46, YCH46
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BF1364.1 hypothetical proteinchromosome CDS1601712 357 + 0.484594
NA BF3998 conserved hypothetical proteinchromosome CDS4569776 213 - 0.394366
NA BF0828 putative non-specific DNA binding proteinchromosome CDS978801 480 + 0.50625
NA BF2906 serine type site-specific recombinasechromosome CDS3318051 645 + 0.443411
NA BF0958 DNA replication and repair protein RecFchromosome CDS1159040 1113 + 0.431267
NA BF2436 conserved hypothetical proteinchromosome CDS2816921 735 - 0.432653
NA BF2885 putative DNA primasechromosome CDS3300892 2199 + 0.477945
NA BF3777 conserved hypothetical proteinchromosome CDS4294653 939 - 0.398296
NA BF4318 putative truncated integrasechromosome CDS4917002 603 + 0.404643
NA BF0483 putative DNA repair proteinchromosome CDS562388 693 - 0.477633
NA BF2480 hypothetical proteinchromosome CDS2854924 837 + 0.313023
NA BF2299 ATP-dependent RNA helicasechromosome CDS2672495 1257 - 0.416866
NA BF2799 hypothetical proteinchromosome CDS3210937 2532 + 0.506319
NA BF1267 DNA mismatch repair protein MutSchromosome CDS1503610 2499 - 0.461785
NA BF3168 conserved hypothetical proteinchromosome CDS3588894 1767 - 0.324844
NA BF0731.3 IS66 family transposasechromosome CDS858516 1674 + 0.5
NA BF0014 conserved hypothetical proteinchromosome CDS16559 2028 + 0.394477
NA BF3464 tyrosine type site-specific recombinasechromosome CDS3964746 588 + 0.316327
NA BF0086 putative N6-adenine-specific DNA methylasechromosome CDS94742 1356 - 0.462389
NA BF2857 conserved hypothetical proteinchromosome CDS3275509 1890 + 0.350265
NA BF1241 endonuclease IVchromosome CDS1473233 837 - 0.449223
NA BF0144 Exc proteinchromosome CDS156512 2088 - 0.566092
NA BF2484 tyrosine type site-specific recombinasechromosome CDS2857066 1203 - 0.389027
NA BF2562 hypothetical proteinchromosome CDS2944720 456 + 0.385965
NA BF1883 putative AAA family ATPasechromosome CDS2212580 1272 - 0.481132
NA BF2545 conserved hypothetical proteinchromosome CDS2926484 513 - 0.323587
NA BF0656 tyrosine type site-specific recombinasechromosome CDS768727 1221 - 0.389025
NA BF4262 probable truncated transposasechromosome CDS4865243 291 + 0.429553
NA BF4369 putative outer membrane protein probably involved in nutrient bindingchromosome CDS4976320 1488 - 0.541667
NA BF1168 tyrosine type site-specific recombinasechromosome CDS1404360 1116 - 0.437276
NA BF0152 tyrosine type site-specific recombinasechromosome CDS162258 1236 - 0.542071
NA BF3346 M-like proteinchromosome CDS3820730 1578 - 0.374525
NA BF2345.3 conserved hypothetical protein related to ISchromosome CDS2710928 366 - 0.437158
NA BF1349 site-specific DNA-methyltransferase (cytosine-specific)chromosome CDS1590007 891 - 0.481481
NA BF2403 DNA ligasechromosome CDS2774657 1998 + 0.43043
NA BF1862 SOS mutagenesis and repair protein UmuC homologchromosome CDS2190977 1284 - 0.426791
NA BF3146 ATP-dependent exonuclease SbcCchromosome CDS3557561 2964 - 0.504723
NA BF4415 conserved hypothetical proteinchromosome CDS5044721 1659 - 0.425558
NA BF3676 putative non-specific DNA binding proteinchromosome CDS4186985 471 + 0.452229
NA BF2359 tyrosine type site-specific recombinasechromosome CDS2724849 1245 - 0.359036
NA BF1052 conserved hypothetical proteinchromosome CDS1265127 429 - 0.491841
NA BF3582 conserved hypothetical proteinchromosome CDS4094360 489 + 0.474438
NA BF3231 DNA polymerase III subunit gamma/tauchromosome CDS3666202 1845 - 0.472629
NA BF3999 putative exodeoxyribonuclease VII large subunitchromosome CDS4570084 1233 - 0.545823
NA BF3320 excinuclease ABC subunit Achromosome CDS3788870 2784 + 0.519037
NA BF2765 serinr type site-specific recombinase Mpichromosome CDS3176578 594 - 0.43771
NA BF1781 tyrosine type site-specific recombinasechromosome CDS2095910 1215 + 0.492181
NA BF1042 RNA-directed DNA polymerasechromosome CDS1252772 1113 + 0.448338
NA BF4201 tyrosine type site-specific recombinasechromosome CDS4795928 882 - 0.426304
NA BF2550 conserved hypothetical proteinchromosome CDS2932185 672 - 0.345238
NA BF2411 DNA gyrase A subunitchromosome CDS2788100 2538 + 0.444838
NA BF3604 conserved hypothetical proteinchromosome CDS4112606 294 - 0.414966
NA BF2180 putative helicasechromosome CDS2543126 2535 + 0.437081
NA BF4060 probable transposasechromosome CDS4638688 519 + 0.408478
NA BF1390 tyrosine type site-specific recombinasechromosome CDS1625449 1152 - 0.480903
NA BF4151 DNA mismatch repair protein MutSchromosome CDS4757831 1815 + 0.448485
NA BF1154 conserved hypothetical proteinchromosome CDS1390035 2001 - 0.435782
NA BF0518 tyrosine type site-specific recombinasechromosome CDS593135 627 + 0.350877
NA BF3122 conserved hypothetical proteinchromosome CDS3535106 321 + 0.411215
NA BF2470 putative methylasechromosome CDS2849421 756 - 0.414021
NA BF3798 DNA topoisomerase IIIchromosome CDS4327202 2151 - 0.441655
NA BF2981 DNA polymerase III beta chainchromosome CDS3386734 1125 - 0.449778
NA BF3683 putative very-short-patch-repair endonucleasechromosome CDS4193031 516 - 0.494186
NA BF0988 putative helicasechromosome CDS1193267 2001 - 0.477261
NA BF3932 single-stranded-DNA-specific exonuclease RecJchromosome CDS4477752 1719 + 0.474695
NA BF1151 conserved hypothetical proteinchromosome CDS1385678 1167 - 0.327335
NA BF3883 putative DNA mismatch repair proteinchromosome CDS4421492 1050 - 0.438095
NA BF3004 tyrosine type site-specific recombinasechromosome CDS3410207 1212 + 0.576733
NA BF4240 IS21 family transposasechromosome CDS4834014 600 - 0.443333
NA BF3039 hypothetical proteinchromosome CDS3440657 375 + 0.488
NA BF1683 putative endonucleasechromosome CDS1951683 417 + 0.410072
NA BF4261 hypothetical proteinchromosome CDS4864925 198 + 0.383838
NA BF4292 putative Nudix/MutT family proteinchromosome CDS4896137 558 + 0.47491
NA BF3338 putative methylated-DNA methyltransferasechromosome CDS3809449 345 - 0.498551
NA BF3040 hypothetical proteinchromosome CDS3441195 567 - 0.340388
NA BFp0034 DNA binding protein HUpBFY46 CDS25098 273 + 0.347985
NA BF0163 Holliday junction DNA helicase RuvBchromosome CDS173768 1029 + 0.50243
NA BF0214 Snf2 family helicasechromosome CDS233811 3051 - 0.441495
NA BF2135 ATP-dependent helicasechromosome CDS2482388 3174 - 0.423756
NA BF0523 hypothetical proteinchromosome CDS597659 1143 + 0.304462
NA BF0712 DNA polymerase III alpha subunitchromosome CDS834942 3885 + 0.441184
NA BF2053 recombination protein RecRchromosome CDS2406491 618 + 0.464401
NA BF4217 IS116 family transposasechromosome CDS4818116 999 - 0.453453
NA BF0448 conserved hypothetical proteinchromosome CDS529071 903 - 0.428571
NA BF2526 ATP-dependent DNA helicasechromosome CDS2906221 2361 - 0.543414
NA BF0731.1 hypothetical proteinchromosome CDS857715 357 + 0.484594
NA BF2544 conserved hypothetical proteinchromosome CDS2925474 1014 - 0.335306
NA BF0098 excinuclease ABC subunit Cchromosome CDS107735 1827 - 0.431855
NA BF4237 conserved hypothetical protein related to ISchromosome CDS4831519 366 + 0.437158
NA BF1553 DNA-binding protein HUchromosome CDS1804580 276 - 0.387681
NA BF1143 type III DNA modification enzymechromosome CDS1373533 2007 - 0.434978
NA BF4225 truncated IS116 family transposasechromosome CDS4822468 471 - 0.420382
NA BFp0003 transposasepBFY46 CDS1127 1662 + 0.430806
NA BF1988 tyrosine type site-specific recombinasechromosome CDS2328331 1230 - 0.464228
NA BF4583 DNA mismatch repair protein mutSchromosome CDS5266219 2589 - 0.431441
NA BF0286 hypothetical proteinchromosome CDS312688 336 - 0.410714
NA BF2816 ISNCY family transposasechromosome CDS3226382 1602 - 0.403246
NA BF4093 putative DNA polymerase III delta subunitchromosome CDS4681100 1110 + 0.443243
NA BF1169 putative transposasechromosome CDS1405562 1467 - 0.464213
NA BF3681 C-5 cytosine-specific DNA-methylasechromosome CDS4190538 1296 + 0.428241
NA BF3483 conserved hypothetical proteinchromosome CDS3976650 729 + 0.26749
NA BF4274 tyrosine type site-specific recombinasechromosome CDS4874209 1359 - 0.447388
NA BF3743 putative deoxyribonucleasechromosome CDS4249390 777 - 0.436293
NA BF1373 DNA topoisomerase Ichromosome CDS1612428 2088 + 0.565134
NA BF2766 tyrosine type site-specific recombinasechromosome CDS3177187 1140 + 0.455263
NA BF2588 DNA helicasechromosome CDS2974789 1548 - 0.457364
NA BF2771 conserved hypothetical proteinchromosome CDS3184442 453 - 0.587196
NA BF0667 tyrosine type site-specific recombinasechromosome CDS781419 1182 + 0.334179
NA BF2620 excinuclease ABC subunit Bchromosome CDS3012026 2034 + 0.442478
NA BF0276 hypothetical proteinchromosome CDS306247 255 + 0.403922
NA BF2396 conserved hypothetical proteinchromosome CDS2769259 1020 + 0.405882
NA BF1677 tyrosine type site-specific recombinasechromosome CDS1945290 1221 + 0.353808
NA BF1969 hypothetical proteinchromosome CDS2310283 492 + 0.315041
NA BF1156 conserved hypothetical proteinchromosome CDS1392273 2364 - 0.44797
NA BF4210 primosomal protein N'chromosome CDS4807114 2460 - 0.499593
NA BF0639 DNA methyltransferasechromosome CDS759653 1020 - 0.334314
NA BF4283 tyrosine type site-specific recombinasechromosome CDS4883086 933 - 0.449089
NA BF0205 hypothetical proteinchromosome CDS222539 1308 + 0.36315
NA BF3816 uracil-DNA glycosylasechromosome CDS4351698 663 + 0.461538
NA BF1556 single-strand binding proteinchromosome CDS1807809 459 + 0.472767
NA BF2017 ATP-independent RNA helicasechromosome CDS2367090 1320 + 0.500758
NA BF3035 conserved hypothetical proteinchromosome CDS3437953 330 - 0.481818
NA BF0401 putative DNA-binding proteinchromosome CDS470545 858 + 0.376457
NA BFp0040 DNA primase TraCpBFY46 CDS29015 1011 + 0.32542
NA BF1174 probable DNA polymerase III epsilon chainchromosome CDS1411482 528 - 0.465909
NA BF1257 conserved hypothetical proteinchromosome CDS1494568 1026 + 0.438596
NA BF3262 crossover junction endodeoxyribonuclease RuvCchromosome CDS3712677 510 - 0.486275
NA BF0315 conserved hypothetical proteinchromosome CDS349157 501 - 0.451098
NA BF0591 conserved hypothetical proteinchromosome CDS694308 657 - 0.385084
NA BF0706 conserved hypothetical proteinchromosome CDS831917 366 - 0.437158
NA BF4238 IS66 family transposasechromosome CDS4831960 1674 + 0.5
NA BF1227 conserved hypothetical proteinchromosome CDS1458989 1905 + 0.32336
NA BF0169 ATP-dependent RNA helicasechromosome CDS181580 1911 - 0.495029
NA BF1774 IS110 family transposasechromosome CDS2086919 966 + 0.419255
NA BF3300 conserved hypothetical proteinchromosome CDS3752162 1137 - 0.483729
NA BF4425 conserved hypothetical proteinchromosome CDS5059782 1098 + 0.479964
NA BF0731.2 conserved hypothetical protein related to ISchromosome CDS858075 366 + 0.437158
NA BF1209 hypothetical proteinchromosome CDS1442997 684 - 0.327485
NA BF1966 tyrosine type site-specific recombinasechromosome CDS2307873 981 + 0.424057
NA BF3127 transcription-repair coupling factorchromosome CDS3538367 3378 - 0.469213
NA BF1228 tyrosine type site-specific recombinasechromosome CDS1461012 1260 + 0.419841
NA BF3003 tyrosine type site-specific recombinasechromosome CDS3408958 1230 + 0.557724
NA BF4484 tyrosine type site-specific recombinasechromosome CDS5144525 954 + 0.420335
NA BF2839 hypothetical proteinchromosome CDS3248043 498 + 0.403614
NA BF2612 excinuclease ABC subunit Achromosome CDS3002697 2829 - 0.445387
NA BF1283 tyrosine type site-specific recombinasechromosome CDS1521119 1293 - 0.465584
NA BF3036 tyrosine type site-specific recombinasechromosome CDS3438329 894 - 0.472036
NA BF3756 putative helicasechromosome CDS4263862 1905 + 0.493963
NA BF2978 DNA repair protein RecNchromosome CDS3382945 1686 - 0.46382
NA BF4422 DNA-binding protein HU-betachromosome CDS5057704 273 - 0.399267
NA BF0091 DNA polymerase Ichromosome CDS101025 2808 - 0.429487
NA BF0162 conserved hypothetical proteinchromosome CDS172741 699 + 0.46495
NA BF3825 chromosomal replication initiator protein DnaAchromosome CDS4362998 1431 + 0.420685
NA BF3012 serine type site-specific recombinasechromosome CDS3417404 609 - 0.361248
NA BF2134 conserved hypothetical proteinchromosome CDS2479518 2874 - 0.416493
NA BF3522 tyrosine type site-specific recombinasechromosome CDS4027086 1212 - 0.395215
NA BF1131 DNA damage-inducible proteinchromosome CDS1355603 1095 + 0.456621
NA BF0067 TatD-related DNasechromosome CDS68499 636 + 0.429245
NA BF0747 putative methyltransferasechromosome CDS886267 534 - 0.406367
NA BF3147 putative exonucleasechromosome CDS3560693 1233 - 0.512571
NA BF2560 exodeoxyribonucleasechromosome CDS2942615 762 - 0.468504
NA BF4228 tyrosine type site-specific recombinasechromosome CDS4823861 654 + 0.507645
NA BF2226 conserved hypothetical proteinchromosome CDS2596096 468 + 0.438034
NA BF0750 ATP-dependent exoDNAse alpha subunitchromosome CDS888373 1419 + 0.430585
NA BF2915 putative single strand binding proteinchromosome CDS3323675 381 - 0.448819
NA BF3567 putative DNA helicasechromosome CDS4075046 5874 - 0.424583
NA BF3427 ATP-dependent DNA helicase RecQchromosome CDS3916664 1824 + 0.483553
NA BF0411 topoisomerase IV subunit Achromosome CDS480564 2556 - 0.491393
NA BF4270 conserved hypothetical proteinchromosome CDS4870401 1029 - 0.434402
NA BF4241 IS21 family transposasechromosome CDS4834582 1560 - 0.446795
NA BF0114 TraPchromosome CDS120520 903 - 0.55371
NA BF3689 Holliday junction DNA helicase RuvAchromosome CDS4196791 606 - 0.475248
NA BF2345.2 IS66 family transposasechromosome CDS2709179 1674 - 0.5
NA BF3930 DNA-3-methyladenine glycosylase Ichromosome CDS4476981 573 - 0.4363
NA BF2449 conserved hypothetical proteinchromosome CDS2832924 2214 - 0.415537
NA BF3806 conserved hypothetical proteinchromosome CDS4340075 492 + 0.455285
NA BF0888 DNA helicasechromosome CDS1062762 3462 - 0.479492
NA BF3014 conserved hypothetical proteinchromosome CDS3418844 396 + 0.522727
NA BF4359 conserved hypothetical proteinchromosome CDS4964212 462 - 0.424242
NA BF1279 DNA primasechromosome CDS1517174 969 - 0.521156
NA BF3077 MutT/NUDIX family proteinchromosome CDS3481630 393 - 0.409669
NA BF2788 tyrosine type site-specific recombinasechromosome CDS3201025 1131 + 0.445623
NA BF2336 hypothetical proteinchromosome CDS2700060 936 + 0.53953
NA BF1617 conserved hypothetical proteinchromosome CDS1885903 207 - 0.415459
NA BF1776 conserved hypothetical proteinchromosome CDS2088799 1548 + 0.318475
NA BF3503 uracil-DNA glycosylasechromosome CDS4003808 663 + 0.401207
NA BF4545 DNA topoisomerase IV subunit Bchromosome CDS5227160 1872 + 0.465278
NA BF4562 Smf protein DNA processing chain Achromosome CDS5246546 1122 - 0.499109
NA BF2792 DNA primasechromosome CDS3204829 888 + 0.470721
NA BF1364.2 conserved hypothetical protein related to ISchromosome CDS1602072 366 + 0.437158
NA BF3486 conserved hypothetical proteinchromosome CDS3978820 1179 - 0.286684
NA BF0655 conserved hypothetical proteinchromosome CDS768148 294 + 0.384354
NA BF4069 DNA mismatch repair protein MutLchromosome CDS4648068 1878 - 0.485091
NA BF4260 putative reverse transcriptasechromosome CDS4864597 351 + 0.438746
NA BF0776 conserved hypothetical proteinchromosome CDS924341 1851 - 0.388979
NA BF2980 DNA polymerase III epsilon chainchromosome CDS3385830 774 - 0.427649
NA BF0297 DNA gyrase B subunitchromosome CDS329193 1959 - 0.457887
NA BF4302 methylated-DNA-protein-cysteinemethyltransferasechromosome CDS4906774 519 - 0.418112
NA BF4320 conserved hypothetical proteinchromosome CDS4918080 591 + 0.375635
NA BF1987 tyrosine type site-specific recombinasechromosome CDS2327018 1308 - 0.445719
NA BF3933 ATP-dependent DNA helicase RecQchromosome CDS4479467 1905 + 0.495538
NA BFp0047 putative replication proteinpBFY46 CDS32124 1113 + 0.354897
NA BF2801 putative site-specific DNA-methyltransferasechromosome CDS3214395 771 + 0.385214
NA BF1278 mobilization proteinchromosome CDS1515650 1341 - 0.504101
NA BF2424 DNA-binding protein HUchromosome CDS2804124 291 - 0.357388
NA BF2345.4 hypothetical proteinchromosome CDS2711297 357 - 0.484594
NA BF1340 tyrosine type site-specific recombinasechromosome CDS1585191 1230 + 0.48374
NA BF3979 conserved hypothetical proteinchromosome CDS4547318 873 + 0.428408
NA BF4033 tyrosine type site-specific recombinasechromosome CDS4607214 945 - 0.424339
NA BF3455 tyrosine type site-specific recombinasechromosome CDS3956548 1203 + 0.391521
NA BF1213 RecAchromosome CDS1445142 1044 - 0.440613
NA BF2543 conserved hypothetical proteinchromosome CDS2925208 264 - 0.318182
NA BF4076 ATP-dependent DNA helicase RecQchromosome CDS4657536 2181 - 0.454837
NA BF3015 IS116 family transposasechromosome CDS3419476 1026 + 0.358674
NA BF1489 NADH pyrophosphatasechromosome CDS1734127 783 - 0.499361
NA BF2827 putative single stranded DNA binding proteinchromosome CDS3234541 414 - 0.451691
NA BF0547 hypothetical proteinchromosome CDS625163 159 + 0.45283
NA BF0714 conserved hypothetical proteinchromosome CDS839228 336 + 0.434524
NA BF2066 conserved hypothetical proteinchromosome CDS2415449 324 - 0.395062
NA BF4429 DNA binding protein HU familychromosome CDS5065014 291 - 0.43299
NA BF4243 ISNCY family transposasechromosome CDS4838189 1632 + 0.41973
NA BF1364.3 IS66 family transposasechromosome CDS1602513 1674 + 0.5
NA BF4438 tyrosine type site-specific recombinasechromosome CDS5079379 1209 - 0.435897
NA BF0290 ribonuclease HIIchromosome CDS318671 606 + 0.476898
NA BF1660 ATP-dependent RNA helicase DeaDchromosome CDS1923815 1284 - 0.450935
NA BF1306 putative lipoproteinchromosome CDS1545547 744 + 0.376344
NA BF3961 ATP-dependent DNA helicase RecGchromosome CDS4515941 2097 - 0.444444
NA BF0224 conserved hypothetical proteinchromosome CDS245828 714 + 0.408964
NA BFp0032 putative DNA topoisomerase IpBFY46 CDS23940 804 + 0.333333
NA BF0548 putative mutS-like mismatch repair proteinchromosome CDS625328 1134 + 0.442681
NA BF0513 serine type site-specific recombinasechromosome CDS588954 1842 - 0.37785
NA BF4236 hypothetical proteinchromosome CDS4831159 357 + 0.484594
NA BF1158 methyltransferasechromosome CDS1395712 1755 - 0.432479
NA BF1851 putative non-specific DNA binding proteinchromosome CDS2178167 474 + 0.466245
NA BF1554 A/G-specific adenine glycosylasechromosome CDS1805061 1047 + 0.457498
NA BF4419 DNA topoisomerase Ichromosome CDS5052137 2346 + 0.467604
NA BF0300 DNA repair proteinchromosome CDS331996 729 + 0.408779
NA BF3909 putative non-specific DNA binding proteinchromosome CDS4457182 480 - 0.483333
NA BF1234 DNA primasechromosome CDS1465746 906 + 0.4117
NA BF3268 endonuclease IIIchromosome CDS3718182 678 + 0.49115