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2024-05-07 21:21:03

Gene list

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COG category: Replication, recombination and repair
Organism: Symbiobacterium thermophilum, IAM14863

Number of genes found: 206

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Symbiobacterium thermophilum, IAM14863
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STH1124 group II intron-encoding maturasechromosome CDS1256307 1290 + 0.642636
NA STH1346 group II intron-encoding maturasechromosome CDS1492219 1290 + 0.645736
NA STH206 conserved hypothetical proteinchromosome CDS231919 432 - 0.696759
NA STH2953 group II intron-encoding maturasechromosome CDS3176411 1290 - 0.645736
NA STH274 IS21 family transposasechromosome CDS310227 774 - 0.602067
NA STH285 transposase, partialchromosome CDS322529 414 + 0.657005
NA STH2345 micrococcal nuclease-like proteinchromosome CDS2533433 849 - 0.738516
NA STH3181 transposasechromosome CDS3387894 1554 + 0.600386
NA STH2402 conserved hypothetical proteinchromosome CDS2586363 1248 - 0.719551
NA STH315 transposasechromosome CDS354079 1146 + 0.592496
NA STH1605 ATPasechromosome CDS1746244 1164 + 0.715636
NA STH2666 putative endonuclease IIIchromosome CDS2857029 792 - 0.743687
NA STH880 group II intron-encoding maturasechromosome CDS990732 1290 + 0.641085
NA STH2029 ribonuclease HIIchromosome CDS2171084 636 - 0.72327
NA STH1551 group II intron-encoding maturasechromosome CDS1687905 1290 + 0.644961
NA STH2086 transposasechromosome CDS2223057 1359 + 0.596026
NA STH1888 hypothetical protein, proline-and glycine-richchromosome CDS2030456 1620 - 0.761111
NA STH1032 DinP-like DNA-damage-inducible proteinchromosome CDS1148451 1086 + 0.696133
NA STH418 conserved domain proteinchromosome CDS455436 450 + 0.697778
NA STH2279 transposasechromosome CDS2450998 1293 - 0.658159
NA STH3256 DNA polymerase III delta' subunitchromosome CDS3475975 999 - 0.70971
NA STH2559 group II intron-encoding maturasechromosome CDS2746116 1290 - 0.645736
NA STH2265 transposasechromosome CDS2432709 1410 + 0.656028
NA STH2275 transposasechromosome CDS2447666 495 + 0.573737
NA STH3330 transposasechromosome CDS3554328 1359 + 0.596026
NA STH1979 uracil-DNA glycosylasechromosome CDS2115887 762 + 0.725722
NA STH3121 group II intron-encoding maturasechromosome CDS3320329 1290 - 0.645736
NA STH2670 Snf2 family helicase-like proteinchromosome CDS2860082 1500 + 0.706
NA STH50 putative transposase subunitchromosome CDS64888 219 + 0.607306
NA STH1794 group II intron-encoding maturasechromosome CDS1935824 1290 - 0.647287
NA STH151 excinuclease ABC subunit Bchromosome CDS174874 1980 + 0.662121
NA STH1308 putative DNA helicasechromosome CDS1449066 1503 + 0.611444
NA STH2246 conserved hypothetical proteinchromosome CDS2410670 459 - 0.581699
NA STH848 DNA polymerase Ichromosome CDS960268 2625 + 0.694476
NA STH312 conserved hypothetical proteinchromosome CDS351742 1113 + 0.601977
NA STH1302 endonuclease IIIchromosome CDS1438281 699 - 0.690987
NA STH3224 putative site-specific modification DNA-methyltransferasechromosome CDS3438889 1617 + 0.694496
NA STH1298 transposase-like proteinchromosome CDS1435201 600 + 0.641667
NA STH1342 primosomal replication factor Ychromosome CDS1486946 2226 + 0.712938
NA STH811 transposasechromosome CDS910150 1377 + 0.598402
NA STH2525 type II restriction-modification system DNA methylasechromosome CDS2710926 915 - 0.654645
NA STH744 group II intron-encoding maturasechromosome CDS829564 1290 + 0.642636
NA STH3313 group II intron-encoding maturasechromosome CDS3539453 1290 - 0.645736
NA STH273 transposase subunitchromosome CDS309212 756 + 0.611111
NA STH1434 conserved hypothetical proteinchromosome CDS1580061 894 + 0.666667
NA STH1194 transposasechromosome CDS1323637 1266 - 0.610584
NA STH1654 transposasechromosome CDS1798792 528 - 0.727273
NA STH2968 putative ATP-dependent DNA helicasechromosome CDS3190541 1950 - 0.725641
NA STH2679 DNA polymerase Ichromosome CDS2867651 852 + 0.685446
NA STH1671 group II intron-encoding maturasechromosome CDS1812998 1290 + 0.645736
NA STH1825 conserved hypothetical proteinchromosome CDS1970229 519 - 0.689788
NA STH20 group II intron-encoding maturasechromosome CDS31521 1290 + 0.645736
NA STH1945 hypothetical protein, glycine-richchromosome CDS2086532 444 - 0.777027
NA STH2825 NAD-dependent DNA ligasechromosome CDS3040066 2022 - 0.694857
NA STH2658 3-Methyladenine DNA glycosylasechromosome CDS2851187 594 + 0.708754
NA STH286 group II intron-encoding maturase variantchromosome CDS323528 279 + 0.641577
NA STH1131 IstB helper protein N-terminal domainchromosome CDS1263900 411 + 0.618005
NA STH1307 putative ATP-dependent DNA helicasechromosome CDS1447167 1896 + 0.649262
NA STH53 putative transposase subunitchromosome CDS66758 429 + 0.60373
NA STH1299 transposase subunitchromosome CDS1435870 783 + 0.62069
NA STH2244 transposasechromosome CDS2408124 894 - 0.621924
NA STH1845 exodeoxyribonuclease VII small subunitchromosome CDS1990914 225 - 0.693333
NA STH2917 Uracil-DNA glycosylasechromosome CDS3145840 621 + 0.68599
NA STH2261 putative DNA modification methylasechromosome CDS2428181 1188 - 0.677609
NA STH2287 IS21 family transposasechromosome CDS2462899 630 + 0.596825
NA STH3315 replicative DNA helicasechromosome CDS3543136 1341 - 0.666667
NA STH663 conserved hypothetical proteinchromosome CDS729831 924 + 0.654762
NA STH2278 conserved domain proteinchromosome CDS2450171 747 - 0.643909
NA STH2969 putative ATP-dependent DNA helicasechromosome CDS3192559 2040 - 0.764706
NA STH2702 transposase subunitchromosome CDS2895875 756 + 0.611111
NA STH1438 putative RNA methylasechromosome CDS1583547 579 + 0.670121
NA STH2289 transposasechromosome CDS2465954 1266 + 0.612954
NA STH1980 group II intron-encoding maturasechromosome CDS2117007 987 - 0.647416
NA STH1727 A/G-specific adenine glycosylasechromosome CDS1876451 1098 - 0.705829
NA STH2924 group II intron-encoding maturasechromosome CDS3151371 1290 - 0.645736
NA STH2174 ATP-dependent deoxyribonuclease subunit Bchromosome CDS2321354 3498 - 0.725843
NA STH2922 ribonuclease Hchromosome CDS3150382 444 - 0.682432
NA STH47 hypothetical proteinchromosome CDS63171 195 + 0.548718
NA STH2 DNA polymerase III beta subunitchromosome CDS1600 1107 + 0.644986
NA STH287 group II intron-encoding maturase variantchromosome CDS323796 267 + 0.621723
NA STH2280 chromosome CDS2452127 747 - 0.64257
NA STH2263 putative transposasechromosome CDS2431316 405 - 0.617284
NA STH276 transposasechromosome CDS312843 780 + 0.667949
NA STH52 putative transposase subunitchromosome CDS66431 282 + 0.609929
NA STH2592 DNA helicase-like proteinchromosome CDS2780061 2937 + 0.742594
NA STH611 ATP-dependent DNA helicasechromosome CDS661275 2019 + 0.732046
NA STH2084 transposasechromosome CDS2220629 1377 - 0.59114
NA STH2496 ATP-dependent DNA helicasechromosome CDS2678288 2016 - 0.709325
NA STH894 group II intron-encoding maturasechromosome CDS1011349 1290 + 0.644186
NA STH2150 MutT-like proteinchromosome CDS2295216 444 + 0.725225
NA STH1754 group II intron-encoding maturase variantchromosome CDS1898749 633 - 0.625592
NA STH51 transposase subunitchromosome CDS65303 1125 + 0.627556
NA STH2286 transposasechromosome CDS2461253 1506 + 0.612218
NA STH475 conserved hypothetical proteinchromosome CDS514587 1035 + 0.721739
NA STH49 hypothetical proteinchromosome CDS64229 501 + 0.646707
NA STH336 site-specific recombinasechromosome CDS372672 1599 + 0.63227
NA STH2908 conserved domain proteinchromosome CDS3135407 1017 - 0.621436
NA STH2740 ATP-dependent helicasechromosome CDS2944650 1971 - 0.70827
NA STH3230 non-specific DNA-binding proteinchromosome CDS3443065 270 - 0.625926
NA STH305 transposasechromosome CDS342330 1296 + 0.650463
NA STH2460 MutT/nudix family proteinchromosome CDS2646292 489 + 0.650307
NA STH3251 TatD-related DNasechromosome CDS3470012 777 - 0.673102
NA STH2826 ATP-dependent DNA helicasechromosome CDS3042105 2478 - 0.709847
NA STH3260 putative chromosome replication initiation proteinchromosome CDS3479451 1026 - 0.682261
NA STH2014 group II intron-encoding maturasechromosome CDS2155501 1290 + 0.645736
NA STH308 transposasechromosome CDS345667 1293 + 0.658933
NA STH2439 single-strand DNA-specific exonucleasechromosome CDS2623242 2562 - 0.740047
NA STH455 putative DNA-binding proteinchromosome CDS495087 693 + 0.728716
NA STH2710 putative transposasechromosome CDS2907300 339 - 0.533923
NA STH1795 conserved hypothetical proteinchromosome CDS1938517 924 - 0.712121
NA STH3110 group II intron-encoding maturasechromosome CDS3310198 1290 - 0.645736
NA STH769 transposasechromosome CDS866083 1608 - 0.595149
NA STH1725 conserved domain proteinchromosome CDS1873410 846 + 0.640662
NA STH940 G/U mismatch-specific DNA glycosylasechromosome CDS1055355 534 + 0.715356
NA STH2057 group II intron-encoding maturasechromosome CDS2195689 1290 - 0.645736
NA STH2699 transposasechromosome CDS2890021 1458 - 0.61797
NA STH1647 ATP-dependent RNA helicasechromosome CDS1792701 1581 + 0.675522
NA STH1303 putative DNA helicasechromosome CDS1438983 2082 - 0.685399
NA STH2663 hypothetical proteinchromosome CDS2854914 402 + 0.666667
NA STH657 SNF2 family helicasechromosome CDS712377 2970 - 0.738721
NA STH1755 group II intron-encoding maturase variantchromosome CDS1899230 810 - 0.648148
NA STH1474 ribonuclease HIIchromosome CDS1612404 780 + 0.688462
NA STH13 DNA polymerase III gamma and tau subunitschromosome CDS16249 1713 + 0.717455
NA STH849 formamidopyrimidine-DNA glycosidasechromosome CDS962885 918 + 0.729847
NA STH1129 transposasechromosome CDS1261221 1224 - 0.622549
NA STH2383 hypothetical proteinchromosome CDS2569411 378 - 0.624339
NA STH1384 ATP-dependent DNA helicasechromosome CDS1531012 2130 + 0.713146
NA STH1622 conserved hypothetical proteinchromosome CDS1760972 1314 - 0.732877
NA STH2271 DNA polymerase III-like proteinchromosome CDS2442139 1173 + 0.591645
NA STH1435 site-specific DNA-methyltransferasechromosome CDS1580973 1044 + 0.676245
NA STH167 excinuclease ABC subunit Achromosome CDS192733 2865 + 0.677836
NA STH1296 transposase-like proteinchromosome CDS1434174 372 + 0.591398
NA STH1672 DNA topoisomerase IIIchromosome CDS1814408 2352 + 0.718963
NA STH1483 recombinasechromosome CDS1622432 1071 + 0.696545
NA STH54 putative transposasechromosome CDS67313 972 + 0.656379
NA STH2701 transposase subunitchromosome CDS2894345 1527 + 0.62148
NA STH984 group II intron-encoding maturasechromosome CDS1101711 1290 + 0.643411
NA STH171 excinuclease ABC subunit Cchromosome CDS198910 1890 + 0.678307
NA STH1797 ATP-dependent DNA ligasechromosome CDS1940227 939 - 0.748669
NA STH2173 ATP-dependent deoxyribonuclease subunit Achromosome CDS2317255 4116 - 0.735909
NA STH1481 DNA topoisomerase Ichromosome CDS1618572 2208 + 0.681612
NA STH847 group II intron-encoding maturasechromosome CDS958794 1290 + 0.645736
NA STH2698 IS21 family transposasechromosome CDS2889251 774 - 0.593023
NA STH3320 single-strand DNA-binding proteinchromosome CDS3548368 420 - 0.666667
NA STH1480 conserved hypothetical proteinchromosome CDS1617338 1161 + 0.724376
NA STH2586 transposasechromosome CDS2771895 1464 - 0.604508
NA STH496 mutT/nudix family proteinchromosome CDS537687 543 - 0.703499
NA STH2706 transposasechromosome CDS2900678 1359 - 0.599706
NA STH154 conserved hypothetical proteinchromosome CDS178022 525 - 0.638095
NA STH3261 putative chromosome replication initiation proteinchromosome CDS3480433 1032 - 0.656977
NA STH2726 group II intron-encoding maturase, N-terminally truncatedchromosome CDS2925725 1263 - 0.644497
NA STH179 MutT-like proteinchromosome CDS206440 453 + 0.701987
NA STH2705 transposasechromosome CDS2899457 1131 + 0.657825
NA STH272 transposase subunitchromosome CDS307682 1527 + 0.62148
NA STH2720 transposasechromosome CDS2917660 1389 - 0.657307
NA STH2787 endonuclease IIIchromosome CDS3003443 708 - 0.680791
NA STH1297 transposase-like proteinchromosome CDS1434675 555 + 0.603604
NA STH1300 transposase-like proteinchromosome CDS1436693 405 - 0.580247
NA STH1130 transposasechromosome CDS1262672 1227 + 0.592502
NA STH2732 group II intron-encoding maturasechromosome CDS2934448 1290 - 0.643411
NA STH1550 group II intron-encoding maturasechromosome CDS1686025 1290 + 0.645736
NA STH2401 ATP/GTP-binding domain proteinchromosome CDS2585031 1317 - 0.724374
NA STH270 transposasechromosome CDS306480 681 - 0.590308
NA STH275 transposasechromosome CDS310997 1515 - 0.623762
NA STH587 DNA primasechromosome CDS633589 1872 + 0.669338
NA STH1994 conserved hypothetical proteinchromosome CDS2135242 435 - 0.712644
NA STH45 putative transposase subunitchromosome CDS62090 513 - 0.604289
NA STH2812 exodeoxyribonuclease-like proteinchromosome CDS3023293 3591 - 0.649123
NA STH670 transposase-like proteinchromosome CDS738644 1029 + 0.60447
NA STH2237 group II intron-encoding maturase variantchromosome CDS2400637 921 - 0.637351
NA STH1310 site-specific DNA-methyltransferasechromosome CDS1451720 1461 + 0.602327
NA STH2151 conserved hypothetical proteinchromosome CDS2295643 474 - 0.761603
NA STH334 DNA modification methylase M.SthIchromosome CDS371273 870 - 0.547126
NA STH1989 conserved domain proteinchromosome CDS2130700 324 + 0.623457
NA STH1487 conserved hypothetical proteinchromosome CDS1625615 1431 + 0.71768
NA STH1026 putative DNA-methyltransferasechromosome CDS1140862 492 + 0.739837
NA STH2703 putative insertion sequence ATP-binding proteinchromosome CDS2896956 255 + 0.584314
NA STH459 putative endonuclease IVchromosome CDS497824 831 - 0.68231
NA STH2307 putative phosphoesterasechromosome CDS2491067 1122 - 0.738859
NA STH2967 conserved hypothetical proteinchromosome CDS3189654 891 - 0.734007
NA STH1132 IstB helper protein C-terminal domainchromosome CDS1264364 312 + 0.602564
NA STH1846 exodeoxyribonuclease VII large subunitchromosome CDS1991135 1248 - 0.721154
NA STH1821 recombinasechromosome CDS1965866 885 - 0.640678
NA STH1713 ATP-dependent DNA helicasechromosome CDS1859210 2877 + 0.713938
NA STH1475 conserved hypothetical proteinchromosome CDS1613184 357 + 0.728291
dnaA STH1 chromosomal replication initiation proteinchromosome CDS1 1377 + 0.631082
dnaE1 STH659 DNA polymerase III alpha subunitchromosome CDS716759 3759 + 0.694866
dnaE2 STH1885 DNA polymerase III alpha subunitchromosome CDS2026006 3258 - 0.710559
dnaE3 STH1512 DNA polymerase III alpha subunitchromosome CDS1648248 4428 + 0.681798
gyrA STH7 DNA gyrase A subunitchromosome CDS6411 2442 + 0.662981
gyrB STH6 DNA gyrase B subunitchromosome CDS4461 1917 + 0.644757
mfd STH3235 transcription-repair coupling factorchromosome CDS3448780 3732 - 0.701233
mutL STH1748 DNA mismatch repair proteinchromosome CDS1893415 1908 - 0.727463
mutS STH1757 DNA mismatch repair proteinchromosome CDS1901810 2628 - 0.699011
mutS2 STH1115 DNA mismatch repair proteinchromosome CDS1238195 2382 + 0.712846
radC STH371 DNA repair proteinchromosome CDS413197 705 + 0.670922
recA STH1665 multifunctional protein involved in homologous recombinationchromosome CDS1807306 1053 + 0.671415
recF STH4 DNA repair and genetic recombination proteinchromosome CDS2948 1128 + 0.678191
recN STH1835 DNA repair and genetic recombination proteinchromosome CDS1981354 1791 - 0.723618
recO STH568 DNA repair and genetic recombination proteinchromosome CDS609853 762 + 0.7021
recR STH15 recombination proteinchromosome CDS18297 597 + 0.676717
ruvA STH1160 Holliday junction DNA helicase RuvAchromosome CDS1290392 618 + 0.73301
ruvB STH1161 Holliday junction DNA helicase RuvBchromosome CDS1291016 1044 + 0.69636
ruvC STH1159 Holliday junction endodeoxyribonuclease RuvCchromosome CDS1289890 501 + 0.738523
sbcC STH2175 DNA repair exonucleasechromosome CDS2325642 3603 - 0.746878
sbcD STH2176 DNA repair exonucleasechromosome CDS2329241 1236 - 0.730583