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2024-05-08 13:48:36

Gene list

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COG category: Replication, recombination and repair
Organism: Staphylococcus haemolyticus JCSC1435, JCSC1435

Number of genes found: 234

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Staphylococcus haemolyticus JCSC1435, JCSC1435
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SH0714 chromosome CDS737217 609 - 0.382594
NA SH1328 chromosome CDS1361680 975 + 0.258462
NA SH0241 chromosome CDS240914 1731 + 0.29405
NA SH2569 chromosome CDS2584133 573 - 0.380454
NA SH0909 chromosome CDS916776 522 - 0.319923
NA SH0938 chromosome CDS941842 399 + 0.318296
NA SH1561 chromosome CDS1607699 3036 - 0.269104
NA SH1300 chromosome CDS1335222 2439 + 0.327593
NA SH1213 hypothetical protein, putative RNA methylase familychromosome CDS1242275 948 + 0.308017
NA SH0328 chromosome CDS339028 1575 + 0.32254
NA SH2520 TatD related DNasechromosome CDS2528541 771 - 0.363165
NA SH2089 chromosome CDS2125208 333 - 0.309309
NA SH1266 chromosome CDS1303617 687 + 0.294032
NA SH1665 chromosome CDS1719984 867 - 0.317186
NA SH2370 chromosome CDS2382787 396 - 0.338384
NA SH2545 chromosome CDS2562611 390 - 0.348718
NA SH1688 chromosome CDS1747671 801 - 0.347066
NA SH1303 chromosome CDS1340920 429 + 0.344988
NA SH1058 chromosome CDS1063750 1077 + 0.336119
NA SH1757 chromosome CDS1820766 909 - 0.311331
NA SH1293 chromosome CDS1328525 1269 - 0.356974
NA SH0956 chromosome CDS958408 1512 + 0.354497
NA SH1285 chromosome CDS1317048 2274 + 0.320141
NA SH1792 single strand DNA binding proteinchromosome CDS1847237 429 - 0.384615
NA SH1430 chromosome CDS1454753 1380 + 0.306522
NA SH2141 chromosome CDS2173409 903 - 0.353267
NA SH2605 chromosome CDS2614437 660 + 0.266667
NA SH1778 chromosome CDS1839382 444 - 0.349099
NA SH1829 chromosome CDS1878029 552 - 0.307971
NA SH1545 chromosome CDS1585822 1263 - 0.33175
NA SH1118 chromosome CDS1125145 1197 + 0.318296
NA SH1135 chromosome CDS1144798 474 + 0.324895
NA SH1930 chromosome CDS1976896 576 + 0.286458
NA SH1467 chromosome CDS1492555 1134 + 0.352734
NA SH2077 chromosome CDS2118482 459 - 0.276688
NA SH1068 chromosome CDS1072643 387 + 0.255814
NA SH1470 chromosome CDS1498185 879 + 0.318544
NA SH1748 amidase (peptidoglycan hydrolase)chromosome CDS1808214 1395 - 0.36129
NA SH1984 chromosome CDS2037963 3489 - 0.328461
NA SH1800 chromosome CDS1850299 927 - 0.358145
NA SH2088 chromosome CDS2124540 591 - 0.306261
NA SH2519 chromosome CDS2527850 549 - 0.377049
NA SH1358 chromosome CDS1391888 1347 + 0.322197
NA SH2084 chromosome CDS2122930 573 - 0.361257
NA SH1438 DNA-binding protein IIchromosome CDS1465141 273 + 0.344322
NA SH0507 chromosome CDS522318 522 + 0.346743
NA SH2378 chromosome CDS2385761 771 - 0.364462
NA SH0793 chromosome CDS810817 168 - 0.303571
NA SH1392 chromosome CDS1419677 1338 + 0.297459
NA SH1325 chromosome CDS1358186 705 + 0.262411
NA SH2523 chromosome CDS2532417 249 - 0.325301
NA SH1359 chromosome CDS1393244 891 + 0.335578
NA SH1393 chromosome CDS1421007 231 + 0.307359
NA SH1350 chromosome CDS1382590 753 + 0.280212
NA SH1461 chromosome CDS1486961 330 + 0.269697
NA SH1417 ADP-ribose pyrophosphatasechromosome CDS1445085 543 + 0.3186
NA SH1093 chromosome CDS1092663 1047 + 0.332378
NA SH2292 chromosome CDS2324974 639 - 0.338028
NA SH0053 chromosome CDS60832 1110 + 0.342342
NA SH0306 chromosome CDS306786 2259 - 0.363435
NA SH2527 chromosome CDS2534760 927 - 0.320388
NA SH2296 replication initiation protein Repchromosome CDS2328870 306 + 0.271242
NA SH1779 chromosome CDS1839839 1359 - 0.355408
NA SH2080 chromosome CDS2120732 480 - 0.2125
NA SH1473 chromosome CDS1516536 402 - 0.328358
NA SH0528 transcriptional regulator (AraC/XylS family)chromosome CDS542720 168 + 0.345238
NA SH2151 chromosome CDS2183743 876 - 0.289954
NA SH1983 chromosome CDS2034293 3678 - 0.308864
NA SH1059 chromosome CDS1064884 660 - 0.301515
NA SH2203 chromosome CDS2238335 1374 - 0.320233
NA SH1459 DNA replication-like proteinchromosome CDS1485621 687 + 0.296943
NA SH1860 chromosome CDS1909075 624 - 0.274038
NA SH1562 chromosome CDS1610739 1125 - 0.296889
NA SH2276 putative integrasechromosome CDS2311056 558 - 0.304659
NA SH1235 chromosome CDS1272198 873 + 0.311569
NA SH1140 chromosome CDS1149360 909 + 0.310231
NA SH1761 DNA-invertase in Staphylococcus aureus transposon Tn552chromosome CDS1826434 594 - 0.3367
NA SH1821 chromosome CDS1869595 933 + 0.303323
NA SH2050 chromosome CDS2100524 387 - 0.322997
NA SH2391 chromosome CDS2392138 930 - 0.354839
NA SH0333 chromosome CDS346566 1353 + 0.324464
NA SH0052 chromosome CDS58649 1989 + 0.260432
NA SH2375 chromosome CDS2384967 405 - 0.37037
NA SH0630 chromosome CDS650617 801 - 0.314607
binL SH2609 DNA-invertase-Staphylococcus aureus transposonchromosome CDS2618311 594 - 0.3367
binR SH2309 resolvase/integrase BinRchromosome CDS2338163 579 + 0.331606
ccrC SH0056 staphylococcal casette chromosome site specific recombinase CcrCchromosome CDS64143 1677 + 0.336911
dinG SH1457 probable ATP-dependent DNA helicasechromosome CDS1481426 2703 + 0.297447
dnaA SH0001 chromosomal replication initiator proteinchromosome CDS508 1356 + 0.345133
dnaB SH1240 chromosome replication initiation/membrane attachment proteinchromosome CDS1275668 1386 + 0.298701
dnaC SH0015 replicative DNA helicasechromosome CDS19048 1401 + 0.383298
dnaE SH1222 DNA polymerase III, alpha chainchromosome CDS1251452 3204 + 0.299938
dnaG SH1354 DNA primasechromosome CDS1386660 1806 + 0.292913
dnaI SH1241 primosomal proteinchromosome CDS1277054 921 + 0.306189
dnaN SH0002 DNA polymerase III beta chain, sliding clamp subunitchromosome CDS2164 1134 + 0.329806
dnaX SH2534 DNA polymerase III gamma and tau subunitschromosome CDS2545609 1716 - 0.350233
gyrA SH0006 DNA gyrase (topoisomerase II) subunit Achromosome CDS7063 2700 + 0.374444
gyrB SH0005 DNA gyrase (topoisomerase II) subunit Bchromosome CDS5031 1935 + 0.366408
int SH2396 putative site-specific recombinase for integration and excisionchromosome CDS2394908 1386 + 0.336219
int SH2581 integrasechromosome CDS2592134 1215 + 0.341564
int SH1808 integrasechromosome CDS1854643 1026 + 0.311891
int SH1003 chromosome CDS1012242 1176 - 0.344388
int SH2102 integrasechromosome CDS2132063 1089 + 0.280073
lig SH1047 DNA ligasechromosome CDS1050279 2004 + 0.348303
mfd SH2508 transcription-repair coupling factorchromosome CDS2516083 3510 - 0.352137
mutL SH1616 DNA mismatch repair protein MutLchromosome CDS1659922 2028 - 0.310651
mutS SH0197 DNA mismatch repair protein MutSchromosome CDS191159 1608 - 0.358209
mutS SH1617 DNA mismatch repair protein MutSchromosome CDS1661962 2652 - 0.319005
mutS2 SH1817 MutS-like proteinchromosome CDS1864381 2352 - 0.332483
nth SH1460 endonuclease-like proteinchromosome CDS1486297 660 + 0.351515
nuc SH1583 thermonucleasechromosome CDS1631122 537 - 0.320298
parC SH1553 topoisomerase IV subunit Achromosome CDS1595977 2400 - 0.337917
parE SH1554 topoisomerase IV subunit Bchromosome CDS1598373 2001 - 0.342829
pcrA SH1046 ATP-depentend DNA helicasechromosome CDS1048080 2196 + 0.339253
polA SH1234 DNA polymerase Ichromosome CDS1269552 2631 + 0.31889
polC SH1650 DNA polymerase III alpha chain PolC-typechromosome CDS1699467 4317 - 0.343526
priA SH1702 primosomal proteinchromosome CDS1760633 2409 - 0.342881
recA SH1628 RecA proteinchromosome CDS1674945 1047 - 0.374403
recF SH0004 DNA repair and genetic recombination proteinchromosome CDS3906 1116 + 0.348566
recG SH1687 ATP-dependent DNA helicasechromosome CDS1745465 2052 - 0.360624
recN SH1396 DNA repair proteinchromosome CDS1422861 1686 + 0.302491
recQ SH2173 ATP-dependent DNA helicasechromosome CDS2207632 1779 - 0.322091
recR SH2532 recombination proteinchromosome CDS2544536 597 - 0.360134
rnhB SH1669 ribonuclease HIIchromosome CDS1724803 768 - 0.341146
ruvA SH1279 holliday junction DNA helicasechromosome CDS1310270 606 + 0.306931
ruvB SH1280 holliday junction DNA helicasechromosome CDS1310930 996 + 0.35241
shlA1M SH0581 chromosome CDS594122 1239 + 0.290557
shlAIR SH0580 chromosome CDS592544 1473 + 0.300747
sin SH2310 recombinase Sinchromosome CDS2338872 609 + 0.315271
ssb SH2627 single-strand DNA-binding protein of phage phi PVLchromosome CDS2631535 513 - 0.368421
tag SH1262 DNA-3-methyladenine glycosidasechromosome CDS1297936 555 - 0.324324
tnp SH0339 transposase for IS256chromosome CDS350366 1173 + 0.365729
tnp SH2618 transposase for IS1272chromosome CDS2624620 411 - 0.282238
tnp SH0841 transposase for IS1272chromosome CDS842012 1569 + 0.29573
tnp SH1959 transposase for ISSha1chromosome CDS2007723 1317 + 0.297646
tnp SH2621 transposase for ISSha1chromosome CDS2627452 525 + 0.270476
tnp SH1091 transposase for IS256chromosome CDS1090201 1173 + 0.365729
tnp SH0516 transposase for IS1272chromosome CDS529276 1758 + 0.290102
tnp SH0323 transposase for ISSha1chromosome CDS322912 1317 - 0.299924
tnp SH0876 transposase for ISSha1chromosome CDS878035 1317 + 0.297646
tnp SH1504 transposase for IS1272chromosome CDS1543441 1680 + 0.291667
tnp SH0455 transposase for IS1272chromosome CDS472185 1689 + 0.290112
tnp SH2191 transposase for ISSha1chromosome CDS2225319 1317 + 0.299924
tnp SH0760 transposase for IS431chromosome CDS781089 675 - 0.337778
tnp SH2041 transposase for IS1272chromosome CDS2094893 1683 - 0.292335
tnp SH0759 transposase for ISSha1chromosome CDS780564 246 - 0.300813
tnp SH1440 transposase for IS1272chromosome CDS1465756 1335 - 0.291386
tnp SH1204 transposase for IS1272chromosome CDS1232918 1680 - 0.291667
tnp SH0501 transposase for ISSha1chromosome CDS517370 1317 + 0.299165
tnp SH2608 transposase for Tn552chromosome CDS2616897 1443 - 0.309771
tnp SH1005 transposase for IS256chromosome CDS1013943 1173 + 0.365729
tnp SH1912 transposase for ISSha1chromosome CDS1960673 1317 + 0.299165
tnp SH2448 transposase for ISSha1chromosome CDS2444939 714 - 0.308123
tnp SH2073 transposase for ISSha1chromosome CDS2114077 1317 - 0.296887
tnp SH2575 transposase for IS256chromosome CDS2587876 1173 - 0.365729
tnp SH1613 transposase for IS256chromosome CDS1657031 1173 - 0.365729
tnp SH2470 transposase for ISSha1chromosome CDS2472536 525 + 0.281905
tnp SH0119 transposase for IS431chromosome CDS120143 675 - 0.340741
tnp SH0093 transposase for IS431chromosome CDS100329 675 + 0.339259
tnp SH0857 transposase for IS1272chromosome CDS857099 1332 - 0.292793
tnp SH0945 transposase for ISSha1chromosome CDS947597 1317 + 0.297646
tnp SH1330 transposase for IS1272chromosome CDS1363008 1671 + 0.290844
tnp SH1195 transposase for ISSha1chromosome CDS1222082 1317 + 0.296887
tnp SH0382 transposase for IS1272chromosome CDS396609 1620 + 0.289506
tnp SH0721 transposase for ISSha1chromosome CDS742247 1317 - 0.299165
tnp SH0520 transposase for ISSha1chromosome CDS534215 1317 + 0.297646
tnp SH1927 transposase for ISSha1chromosome CDS1974537 1317 + 0.301443
tnp SH1049 transposase for ISSha1chromosome CDS1053602 1317 - 0.297646
tnp SH1496 transposase for IS256chromosome CDS1536118 1173 + 0.365729
tnp SH1081 transposase for IS1272chromosome CDS1082944 372 + 0.287634
tnp SH2577 transposase for IS256chromosome CDS2589663 1173 + 0.365729
tnp SH1008 transposase for IS256chromosome CDS1017400 1173 - 0.365729
tnp SH2597 IS605/IS200-like transposasechromosome CDS2610213 321 - 0.299065
tnp SH2177 transposase for IS1272chromosome CDS2212628 258 + 0.337209
tnp SH0080 transposase for ISSha1chromosome CDS86906 1317 - 0.299165
tnp SH1906 transposase for IS256chromosome CDS1950920 1173 + 0.365729
tnp SH1610 transposase for IS256chromosome CDS1653840 1173 + 0.365729
tnp SH1253 transposase for ISSha1chromosome CDS1289170 366 - 0.262295
tnp SH0204 transposase for IS1272chromosome CDS197883 1701 + 0.291593
tnp SH1865 transposase for IS1272chromosome CDS1913078 225 + 0.333333
tnp SH0087 transposase for IS431chromosome CDS94745 675 - 0.343704
tnp SH1151 transposase for ISSha1chromosome CDS1156881 1317 + 0.298405
tnp SH1760 transposase for Tn552chromosome CDS1825020 1443 - 0.309771
tnp SH0046 transposase for IS431chromosome CDS56315 144 + 0.340278
tnp SH0076 transposase for IS431chromosome CDS85196 366 - 0.363388
tnp SH1510 transposase for ISSha1chromosome CDS1548217 1317 - 0.294609
tnp SH1896 IS605/IS200-like transposasechromosome CDS1941270 321 - 0.299065
tnp SH0025 transposase for IS431chromosome CDS30130 675 - 0.337778
tnp SH0345 transposase for ISSha1chromosome CDS354611 1317 - 0.299924
tnp SH1080 transposase for IS1272chromosome CDS1081646 1335 + 0.292884
tnp SH2447 transposase for ISSha1chromosome CDS2444338 648 - 0.279321
tnp SH0047 transposase for IS431chromosome CDS56624 93 + 0.311828
tnp SH1252 transposase for ISSha1chromosome CDS1288219 903 - 0.307863
tnp SH1643 transposase for ISSha1chromosome CDS1692899 1317 + 0.299165
tnp SH2178 transposase for IS1272chromosome CDS2213116 1263 + 0.288203
tnp SH2428 transposase for IS1272chromosome CDS2430541 1437 + 0.2881
tnp SH1872 transposase for IS1272chromosome CDS1917761 1335 + 0.292884
tnp SH2033 transposase for IS256chromosome CDS2085762 1173 - 0.365729
tnp SH0761 transposase for ISSha1chromosome CDS781788 840 - 0.307143
tnp SH2619 transposase for IS1272chromosome CDS2624994 1335 - 0.292135
tnp SH0971 transposase for IS1272chromosome CDS977013 1713 + 0.288967
tnp SH0885 transposase for IS1272chromosome CDS893881 789 + 0.291508
tnp SH0378 transposase for ISSha1chromosome CDS393453 1317 + 0.295368
tnp SH1439 transposase for IS1272chromosome CDS1465415 378 - 0.283069
tnp SH0830 transposase for ISSha1chromosome CDS833823 1317 + 0.299924
tnp SH0479 transposase for IS1272chromosome CDS493223 1719 + 0.290867
tnp SH0884 transposase for IS1272chromosome CDS893393 492 + 0.300813
tnp SH1873 transposase for IS1272chromosome CDS1919059 405 + 0.279012
tnp SH2282 transposase for ISSha1chromosome CDS2315442 1317 - 0.299924
tnp SH0077 transposase for IS431chromosome CDS85480 378 - 0.34127
tnp SH2620 transposase for ISSha1chromosome CDS2626662 714 + 0.309524
tnp SH2469 transposase for ISSha1chromosome CDS2471746 714 + 0.309524
tnp SH0952 transposase for IS1272chromosome CDS952427 1695 + 0.292625
tnp SH0030 transposase for ISSha1chromosome CDS33019 1317 - 0.296887
tnp SH2573 transposase for IS256chromosome CDS2586066 1173 + 0.365729
tnp SH2267 transposase for IS256chromosome CDS2303171 1173 - 0.365729
tnp SH1964 transposase for IS1272chromosome CDS2011974 1608 + 0.295398
tnp SH1898 transposase for IS1272chromosome CDS1941999 1701 + 0.288654
tnp SH1100 transposase for IS256chromosome CDS1100315 1173 - 0.365729
tnp SH1403 transposase for IS1272chromosome CDS1431301 621 + 0.296296
tnp SH1965 transposase for ISSha1chromosome CDS2013681 1317 + 0.299924
tnp SH1072 transposase for ISSha1chromosome CDS1075550 1317 + 0.299924
tnp SH2017 transposase for IS1272chromosome CDS2070708 1683 + 0.294118
tnp SH2325 transposase for IS431chromosome CDS2346486 675 - 0.343704
tnp SH0048 transposase for IS431chromosome CDS56738 252 + 0.337302
tnp SH1533 transposase for IS1272chromosome CDS1574292 1695 - 0.289086
topA SH1664 DNA topoisomerase Ichromosome CDS1717736 2070 - 0.337681
topB SH0798 DNA topoisomerase III topBchromosome CDS814978 2136 + 0.33427
ung SH2411 uracil DNA glycosylasechromosome CDS2409630 660 - 0.359091
uvrA SH2130 exinuclease ABC subunit Achromosome CDS2159219 2835 - 0.363316
uvrB SH2131 exinuclease ABC subunit Bchromosome CDS2162061 1986 - 0.358006
uvrC SH1815 excinuclease ABC subunit Cchromosome CDS1861983 1791 - 0.3311
xerC SH1662 chromosome CDS1715367 894 - 0.328859
xerD SH1419 site-specific recombinasechromosome CDS1446278 888 + 0.323198