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2024-05-18 09:48:46

Gene list

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COG category: Replication, recombination and repair
Organism: Onion yellows phytoplasma OY-M, onion yellows

Number of genes found: 145

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Onion yellows phytoplasma OY-M, onion yellows
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PAM725 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS824558 492 - 0.264228
NA PAM648 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS741707 639 - 0.322379
NA PAM194 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS235406 3087 - 0.250405
NA PAM340 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS386376 369 - 0.252033
NA PAM631 ribonuclease HII Family 2RecName: Full=Ribonuclease; EC=3.1.26.-; chromosome CDS722519 993 - 0.284995
NA PAM545 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS618240 498 + 0.325301
NA PAM412 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS458035 318 - 0.220126
NA PAM385 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS430185 579 - 0.28152
NA PAM722 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS822066 171 + 0.309942
NA PAM387 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS432561 879 - 0.273038
NA PAM571 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS647699 720 + 0.298611
NA PAM701 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS799898 237 - 0.308017
NA PAM045 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS56624 1182 + 0.323181
NA PAM715 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS816273 186 - 0.215054
NA PAM376 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS423059 393 + 0.287532
NA PAM299 N6-adenine-specific methylaseSubName: Full=N6-adenine-specific methylase; chromosome CDS343768 561 - 0.283422
NA PAM709 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS810263 201 + 0.199005
NA PAM375 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS422068 498 + 0.325301
NA PAM080 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS104409 246 + 0.264228
NA PAM398 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS443637 336 + 0.255952
NA PAM067 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS87922 624 + 0.307692
NA PAM546 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS619234 477 + 0.268344
NA PAM342 retron-type reverse transcriptaseSubName: Full=Retron-type reverse transcriptase; chromosome CDS388385 1761 - 0.327087
NA PAM304 Hollyday junction resolvaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS346579 456 - 0.302632
NA PAM717 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS816915 354 - 0.322034
NA PAM407 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS451784 555 - 0.252252
NA PAM336 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS382174 477 + 0.266247
NA PAM391 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS436440 639 - 0.322379
NA PAM358 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS407005 480 - 0.266667
NA PAM341 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS387203 594 - 0.308081
NA PAM039 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS50922 1668 + 0.261391
NA PAM651 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS744248 624 - 0.309295
NA PAM692 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS791628 1692 - 0.316194
NA PAM425 conserved hypothetical protein chromosome CDS471408 489 + 0.261759
NA PAM681 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS781416 219 - 0.26484
NA PAM431 hypothetical protein chromosome CDS476974 513 + 0.259259
NA PAM520 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS593722 651 + 0.319508
NA PAM345 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS392276 630 - 0.298413
NA PAM622 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS713917 579 + 0.343696
NA PAM543 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS615553 651 + 0.327189
NA PAM051 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS62166 1278 + 0.194053
NA PAM075 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS95046 879 + 0.270762
NA PAM716 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS816582 267 - 0.359551
NA PAM335 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS381801 348 + 0.29023
NA PAM609 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS695199 684 + 0.311404
NA PAM071 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS91415 648 + 0.330247
NA PAM538 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS611813 366 + 0.306011
NA PAM526 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS599881 459 + 0.24183
NA PAM728 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS828160 2094 - 0.207736
NA PAM062 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS83133 183 + 0.31694
NA PAM459 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS520499 1017 - 0.249754
NA PAM318 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS366112 480 - 0.2625
NA PAM334 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS381179 498 + 0.325301
dam PAM565 site-specific DNA methylaseSubName: Full=Site-specific DNA methylase; chromosome CDS639091 885 - 0.242938
dam PAM409 site-specific DNA methylaseSubName: Full=Site-specific DNA methylase; chromosome CDS454082 885 + 0.244068
dam PAM395 site-specific DNA methylaseSubName: Full=Site-specific DNA methylase; chromosome CDS440956 660 - 0.283333
dam PAM042 site-specific DNA methylaseSubName: Full=Site-specific DNA methylase; chromosome CDS54352 660 + 0.275758
dnaA PAM001 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1 1524 + 0.231627
dnaB PAM074 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS93535 1500 + 0.297333
dnaB PAM673 replication initiation/membrane attachment proteinSubName: Full=Replication initiation/membrane attachment; chromosome CDS771414 1194 - 0.29397
dnaB PAM570 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS645677 1497 - 0.278557
dnaB PAM645 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS738718 1494 - 0.305221
dnaB PAM550 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS623826 1497 - 0.279225
dnaB PAM428 replicative DNA helicase chromosome CDS474466 1299 + 0.270208
dnaB PAM523 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS595814 1500 + 0.292
dnaB PAM013 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS15886 1344 + 0.295387
dnaB PAM388 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS433451 1494 - 0.305221
dnaB PAM686 replicative DNA helicaseSubName: Full=Replicative DNA helicase; chromosome CDS786737 1500 - 0.296
dnaC PAM672 DNA replication proteinSubName: Full=DNA replication protein; chromosome CDS770513 819 - 0.277167
dnaE PAM591 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; chromosome CDS673050 1878 + 0.301917
dnaG PAM627 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS718038 1815 + 0.316804
dnaG PAM549 DNA primaseSubName: Full=DNA primase; chromosome CDS622476 1326 - 0.28356
dnaG PAM572 DNA primaseSubName: Full=DNA primase; chromosome CDS648430 1326 + 0.293364
dnaG PAM685 DNA primaseSubName: Full=DNA primase; chromosome CDS785385 1326 - 0.299397
dnaG PAM644 DNA primaseSubName: Full=DNA primase; chromosome CDS737473 1233 - 0.291971
dnaG PAM569 DNA primaseSubName: Full=DNA primase; chromosome CDS644327 1326 - 0.286576
dnaG PAM524 DNA primaseSubName: Full=DNA primase; chromosome CDS597324 1326 + 0.282805
dnaN PAM002 DNA polymerase III beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1831 1137 + 0.211082
dnaX PAM617 DNA polymerase III, gamma/tau subunitSubName: Full=DNA polymerase III, gamma/tau subunit; chromosome CDS701516 1449 - 0.328502
exo PAM676 5'-3' exonucleaseSubName: Full=5-3 exonuclease; chromosome CDS775265 969 - 0.307534
gyrA PAM499 DNA gyrase alpha subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS571995 2508 + 0.341308
gyrB PAM498 DNA gyrase beta subunitSubName: Full=DNA gyrase beta subunit; chromosome CDS569895 2016 + 0.33631
himA PAM698 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS798267 333 - 0.291291
himA PAM063 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS83594 291 + 0.264605
himA PAM317 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS365361 291 - 0.264605
himA PAM043 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS55120 291 + 0.268041
himA PAM325 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS370495 291 + 0.247423
himA PAM365 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS411388 291 + 0.247423
himA PAM242 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS270744 285 + 0.291228
himA PAM534 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS609743 333 - 0.291291
himA PAM513 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS586422 291 + 0.264605
himA PAM654 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS748906 291 - 0.261168
himA PAM357 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS406254 291 - 0.264605
himA PAM394 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS440557 291 - 0.264605
himA PAM402 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS445899 291 + 0.264605
himA PAM420 bacterial nucleoid DNA-binding protein chromosome CDS468176 333 - 0.282282
himA PAM563 bacterial nucleoid DNA-binding proteinSubName: Full=Bacterial nucleoid DNA-binding protein; chromosome CDS638113 291 - 0.28866
holA PAM016 DNA polymerase III delta subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS19044 972 - 0.239712
holB PAM231 DNA polymerase III, delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; chromosome CDS259133 990 + 0.270707
lig PAM438 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS486050 2016 + 0.326389
mutT PAM476 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS540857 510 - 0.343137
nei PAM674 formamidopyrimidine-DNA glycosylaseSubName: Full=Formamidopyrimidine-DNA glycosylase; chromosome CDS772661 831 - 0.281588
nfo PAM454 endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS510833 879 + 0.318544
polA PAM675 DNA polymerase ISubName: Full=DNA polymerase I; chromosome CDS773647 1443 - 0.241857
polC PAM465 DNA polymerase III alpha subunitRecName: Full=DNA polymerase III polC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS525667 4716 + 0.307888
priA PAM154 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS181476 2460 - 0.293902
smc PAM037 chromosome segregation ATPase homologSubName: Full=Chromosome segregation ATPase homolog; chromosome CDS48879 888 + 0.236486
srmB PAM714 superfamily II DNA and RNA helicaseSubName: Full=Superfamily II DNA and RNA helicase; chromosome CDS814483 1659 + 0.303195
srmB PAM453 superfamily II DNA and RNA helicaseSubName: Full=Superfamily II DNA and RNA helicase; chromosome CDS509237 1074 + 0.285847
ssb PAM364 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS411005 330 + 0.312121
ssb PAM655 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS749326 345 - 0.278261
ssb PAM512 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS586056 330 + 0.281818
ssb PAM396 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS442093 330 - 0.275758
ssb PAM564 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS638584 336 - 0.27381
ssb PAM041 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS53544 330 + 0.281818
ssb PAM410 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS455138 336 + 0.270833
ssb PAM699 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS798672 315 - 0.336508
ssb PAM535 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS610148 315 - 0.336508
ssb PAM010 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS12524 345 + 0.284058
ssb PAM421 single-stranded DNA-binding protein chromosome CDS468566 315 - 0.295238
ssb PAM324 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS370112 330 + 0.312121
ssb PAM359 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS407793 330 - 0.281818
ssb PAM319 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS366900 330 - 0.281818
ssb PAM726 single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS825777 330 + 0.278788
tatD PAM605 Mg-dependent DNaseSubName: Full=Mg-dependent DNase; chromosome CDS691571 768 + 0.302083
topA PAM279 topoisomerase IARecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS320143 1944 + 0.309671
tra5 PAM337 putative transposaseSubName: Full=Putative transposase; chromosome CDS383271 930 - 0.24086
tra5 PAM683 putative transposaseSubName: Full=Putative transposase; chromosome CDS783244 948 + 0.225738
tra5 PAM642 putative transposaseSubName: Full=Putative transposase; chromosome CDS735313 939 - 0.237487
tra5 PAM547 putative transposaseSubName: Full=Putative transposase; chromosome CDS620331 930 - 0.24086
tra5 PAM666 putative transposaseSubName: Full=Putative transposase; chromosome CDS764214 951 - 0.229232
tra5 PAM574 putative transposaseSubName: Full=Putative transposase; chromosome CDS650962 939 + 0.237487
tra5 PAM567 putative transposaseSubName: Full=Putative transposase; chromosome CDS642203 930 - 0.24086
tra5 PAM406 putative transposaseSubName: Full=Putative transposase; chromosome CDS450732 609 - 0.215107
ung PAM163 uracil DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS194730 642 + 0.297508
uvrA PAM450 excinuclease ATPase subunitSubName: Full=Excinuclease ATPase subunit; chromosome CDS504067 2919 - 0.299418
uvrB PAM432 helicase subunit of the DNA excision repair complex chromosome CDS478646 2019 - 0.308569
uvrC PAM433 nuclease subunit of the excinuclease complexSubName: Full=Nuclease subunit of the excinuclease complex; chromosome CDS481032 1386 - 0.285714
uvrD PAM315 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS360616 3117 + 0.196663
uvrD PAM527 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS600552 3117 - 0.196343
uvrD PAM621 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS711332 2244 + 0.32041
uvrD PAM505 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS578686 2622 - 0.202899
uvrD PAM413 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS458850 2433 - 0.199753
uvrD PAM559 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS632510 2541 + 0.199134
uvrD PAM355 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS401509 3117 + 0.197947