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2024-05-04 03:02:23

Gene list

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COG category: Replication, recombination and repair
Organism: Onion yellows phytoplasma OY-M, onion yellows

Number of genes found: 145

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Onion yellows phytoplasma OY-M, onion yellows
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PAM526 conserved hypothetical proteinchromosome CDS599881 459 + 0.24183
NA PAM725 hypothetical proteinchromosome CDS824558 492 - 0.264228
NA PAM375 hypothetical proteinchromosome CDS422068 498 + 0.325301
NA PAM412 hypothetical proteinchromosome CDS458035 318 - 0.220126
NA PAM062 hypothetical proteinchromosome CDS83133 183 + 0.31694
NA PAM571 hypothetical proteinchromosome CDS647699 720 + 0.298611
NA PAM071 conserved hypothetical proteinchromosome CDS91415 648 + 0.330247
NA PAM681 hypothetical proteinchromosome CDS781416 219 - 0.26484
NA PAM425 conserved hypothetical proteinchromosome CDS471408 489 + 0.261759
NA PAM039 conserved hypothetical proteinchromosome CDS50922 1668 + 0.261391
NA PAM391 conserved hypothetical proteinchromosome CDS436440 639 - 0.322379
NA PAM715 hypothetical proteinchromosome CDS816273 186 - 0.215054
NA PAM045 conserved hypothetical proteinchromosome CDS56624 1182 + 0.323181
NA PAM051 hypothetical proteinchromosome CDS62166 1278 + 0.194053
NA PAM631 ribonuclease HII Family 2chromosome CDS722519 993 - 0.284995
NA PAM651 conserved hypothetical proteinchromosome CDS744248 624 - 0.309295
NA PAM335 hypothetical proteinchromosome CDS381801 348 + 0.29023
NA PAM067 conserved hypothetical proteinchromosome CDS87922 624 + 0.307692
NA PAM728 conserved hypothetical proteinchromosome CDS828160 2094 - 0.207736
NA PAM692 conserved hypothetical proteinchromosome CDS791628 1692 - 0.316194
NA PAM431 hypothetical proteinchromosome CDS476974 513 + 0.259259
NA PAM520 conserved hypothetical proteinchromosome CDS593722 651 + 0.319508
NA PAM701 hypothetical proteinchromosome CDS799898 237 - 0.308017
NA PAM545 hypothetical proteinchromosome CDS618240 498 + 0.325301
NA PAM722 hypothetical proteinchromosome CDS822066 171 + 0.309942
NA PAM648 conserved hypothetical proteinchromosome CDS741707 639 - 0.322379
NA PAM716 hypothetical proteinchromosome CDS816582 267 - 0.359551
NA PAM080 hypothetical proteinchromosome CDS104409 246 + 0.264228
NA PAM194 conserved hypothetical proteinchromosome CDS235406 3087 - 0.250405
NA PAM075 hypothetical proteinchromosome CDS95046 879 + 0.270762
NA PAM538 hypothetical proteinchromosome CDS611813 366 + 0.306011
NA PAM622 conserved hypothetical proteinchromosome CDS713917 579 + 0.343696
NA PAM318 hypothetical proteinchromosome CDS366112 480 - 0.2625
NA PAM398 hypothetical proteinchromosome CDS443637 336 + 0.255952
NA PAM385 hypothetical proteinchromosome CDS430185 579 - 0.28152
NA PAM459 conserved hypothetical proteinchromosome CDS520499 1017 - 0.249754
NA PAM609 conserved hypothetical proteinchromosome CDS695199 684 + 0.311404
NA PAM376 hypothetical proteinchromosome CDS423059 393 + 0.287532
NA PAM546 hypothetical proteinchromosome CDS619234 477 + 0.268344
NA PAM340 hypothetical proteinchromosome CDS386376 369 - 0.252033
NA PAM304 Hollyday junction resolvasechromosome CDS346579 456 - 0.302632
NA PAM345 conserved hypothetical proteinchromosome CDS392276 630 - 0.298413
NA PAM543 conserved hypothetical proteinchromosome CDS615553 651 + 0.327189
NA PAM334 hypothetical proteinchromosome CDS381179 498 + 0.325301
NA PAM341 hypothetical proteinchromosome CDS387203 594 - 0.308081
NA PAM342 retron-type reverse transcriptasechromosome CDS388385 1761 - 0.327087
NA PAM407 conserved hypothetical proteinchromosome CDS451784 555 - 0.252252
NA PAM299 N6-adenine-specific methylasechromosome CDS343768 561 - 0.283422
NA PAM717 hypothetical proteinchromosome CDS816915 354 - 0.322034
NA PAM358 hypothetical proteinchromosome CDS407005 480 - 0.266667
NA PAM709 hypothetical proteinchromosome CDS810263 201 + 0.199005
NA PAM387 hypothetical proteinchromosome CDS432561 879 - 0.273038
NA PAM336 hypothetical proteinchromosome CDS382174 477 + 0.266247
dam PAM395 site-specific DNA methylasechromosome CDS440956 660 - 0.283333
dam PAM042 site-specific DNA methylasechromosome CDS54352 660 + 0.275758
dam PAM565 site-specific DNA methylasechromosome CDS639091 885 - 0.242938
dam PAM409 site-specific DNA methylasechromosome CDS454082 885 + 0.244068
dnaA PAM001 chromosomal replication initiator proteinchromosome CDS1 1524 + 0.231627
dnaB PAM686 replicative DNA helicasechromosome CDS786737 1500 - 0.296
dnaB PAM388 replicative DNA helicasechromosome CDS433451 1494 - 0.305221
dnaB PAM523 replicative DNA helicasechromosome CDS595814 1500 + 0.292
dnaB PAM673 replication initiation/membrane attachment proteinchromosome CDS771414 1194 - 0.29397
dnaB PAM550 replicative DNA helicasechromosome CDS623826 1497 - 0.279225
dnaB PAM013 replicative DNA helicasechromosome CDS15886 1344 + 0.295387
dnaB PAM645 replicative DNA helicasechromosome CDS738718 1494 - 0.305221
dnaB PAM570 replicative DNA helicasechromosome CDS645677 1497 - 0.278557
dnaB PAM428 replicative DNA helicasechromosome CDS474466 1299 + 0.270208
dnaB PAM074 replicative DNA helicasechromosome CDS93535 1500 + 0.297333
dnaC PAM672 DNA replication proteinchromosome CDS770513 819 - 0.277167
dnaE PAM591 DNA polymerase III alpha subunitchromosome CDS673050 1878 + 0.301917
dnaG PAM685 DNA primasechromosome CDS785385 1326 - 0.299397
dnaG PAM524 DNA primasechromosome CDS597324 1326 + 0.282805
dnaG PAM569 DNA primasechromosome CDS644327 1326 - 0.286576
dnaG PAM549 DNA primasechromosome CDS622476 1326 - 0.28356
dnaG PAM627 DNA primasechromosome CDS718038 1815 + 0.316804
dnaG PAM644 DNA primasechromosome CDS737473 1233 - 0.291971
dnaG PAM572 DNA primasechromosome CDS648430 1326 + 0.293364
dnaN PAM002 DNA polymerase III beta subunitchromosome CDS1831 1137 + 0.211082
dnaX PAM617 DNA polymerase III, gamma/tau subunitchromosome CDS701516 1449 - 0.328502
exo PAM676 5'-3' exonucleasechromosome CDS775265 969 - 0.307534
gyrA PAM499 DNA gyrase alpha subunitchromosome CDS571995 2508 + 0.341308
gyrB PAM498 DNA gyrase beta subunitchromosome CDS569895 2016 + 0.33631
himA PAM242 bacterial nucleoid DNA-binding proteinchromosome CDS270744 285 + 0.291228
himA PAM654 bacterial nucleoid DNA-binding proteinchromosome CDS748906 291 - 0.261168
himA PAM563 bacterial nucleoid DNA-binding proteinchromosome CDS638113 291 - 0.28866
himA PAM394 bacterial nucleoid DNA-binding proteinchromosome CDS440557 291 - 0.264605
himA PAM063 bacterial nucleoid DNA-binding proteinchromosome CDS83594 291 + 0.264605
himA PAM698 bacterial nucleoid DNA-binding proteinchromosome CDS798267 333 - 0.291291
himA PAM317 bacterial nucleoid DNA-binding proteinchromosome CDS365361 291 - 0.264605
himA PAM402 bacterial nucleoid DNA-binding proteinchromosome CDS445899 291 + 0.264605
himA PAM357 bacterial nucleoid DNA-binding proteinchromosome CDS406254 291 - 0.264605
himA PAM043 bacterial nucleoid DNA-binding proteinchromosome CDS55120 291 + 0.268041
himA PAM513 bacterial nucleoid DNA-binding proteinchromosome CDS586422 291 + 0.264605
himA PAM365 bacterial nucleoid DNA-binding proteinchromosome CDS411388 291 + 0.247423
himA PAM420 bacterial nucleoid DNA-binding proteinchromosome CDS468176 333 - 0.282282
himA PAM325 bacterial nucleoid DNA-binding proteinchromosome CDS370495 291 + 0.247423
himA PAM534 bacterial nucleoid DNA-binding proteinchromosome CDS609743 333 - 0.291291
holA PAM016 DNA polymerase III delta subunitchromosome CDS19044 972 - 0.239712
holB PAM231 DNA polymerase III, delta prime subunitchromosome CDS259133 990 + 0.270707
lig PAM438 NAD-dependent DNA ligasechromosome CDS486050 2016 + 0.326389
mutT PAM476 MutT/nudix family proteinchromosome CDS540857 510 - 0.343137
nei PAM674 formamidopyrimidine-DNA glycosylasechromosome CDS772661 831 - 0.281588
nfo PAM454 endonuclease IVchromosome CDS510833 879 + 0.318544
polA PAM675 DNA polymerase Ichromosome CDS773647 1443 - 0.241857
polC PAM465 DNA polymerase III alpha subunitchromosome CDS525667 4716 + 0.307888
priA PAM154 primosomal protein N'chromosome CDS181476 2460 - 0.293902
smc PAM037 chromosome segregation ATPase homologchromosome CDS48879 888 + 0.236486
srmB PAM453 superfamily II DNA and RNA helicasechromosome CDS509237 1074 + 0.285847
srmB PAM714 superfamily II DNA and RNA helicasechromosome CDS814483 1659 + 0.303195
ssb PAM396 single-stranded DNA-binding proteinchromosome CDS442093 330 - 0.275758
ssb PAM410 single-stranded DNA-binding proteinchromosome CDS455138 336 + 0.270833
ssb PAM535 single-stranded DNA-binding proteinchromosome CDS610148 315 - 0.336508
ssb PAM699 single-stranded DNA-binding proteinchromosome CDS798672 315 - 0.336508
ssb PAM041 single-stranded DNA-binding proteinchromosome CDS53544 330 + 0.281818
ssb PAM319 single-stranded DNA-binding proteinchromosome CDS366900 330 - 0.281818
ssb PAM512 single-stranded DNA-binding proteinchromosome CDS586056 330 + 0.281818
ssb PAM726 single-stranded DNA-binding proteinchromosome CDS825777 330 + 0.278788
ssb PAM359 single-stranded DNA-binding proteinchromosome CDS407793 330 - 0.281818
ssb PAM421 single-stranded DNA-binding proteinchromosome CDS468566 315 - 0.295238
ssb PAM324 single-stranded DNA-binding proteinchromosome CDS370112 330 + 0.312121
ssb PAM564 single-stranded DNA-binding proteinchromosome CDS638584 336 - 0.27381
ssb PAM364 single-stranded DNA-binding proteinchromosome CDS411005 330 + 0.312121
ssb PAM655 single-stranded DNA-binding proteinchromosome CDS749326 345 - 0.278261
ssb PAM010 single-stranded DNA-binding proteinchromosome CDS12524 345 + 0.284058
tatD PAM605 Mg-dependent DNasechromosome CDS691571 768 + 0.302083
topA PAM279 topoisomerase IAchromosome CDS320143 1944 + 0.309671
tra5 PAM642 putative transposasechromosome CDS735313 939 - 0.237487
tra5 PAM406 putative transposasechromosome CDS450732 609 - 0.215107
tra5 PAM337 putative transposasechromosome CDS383271 930 - 0.24086
tra5 PAM547 putative transposasechromosome CDS620331 930 - 0.24086
tra5 PAM666 putative transposasechromosome CDS764214 951 - 0.229232
tra5 PAM574 putative transposasechromosome CDS650962 939 + 0.237487
tra5 PAM567 putative transposasechromosome CDS642203 930 - 0.24086
tra5 PAM683 putative transposasechromosome CDS783244 948 + 0.225738
ung PAM163 uracil DNA glycosylasechromosome CDS194730 642 + 0.297508
uvrA PAM450 excinuclease ATPase subunitchromosome CDS504067 2919 - 0.299418
uvrB PAM432 helicase subunit of the DNA excision repair complexchromosome CDS478646 2019 - 0.308569
uvrC PAM433 nuclease subunit of the excinuclease complexchromosome CDS481032 1386 - 0.285714
uvrD PAM413 ATP-dependent DNA helicasechromosome CDS458850 2433 - 0.199753
uvrD PAM355 ATP-dependent DNA helicasechromosome CDS401509 3117 + 0.197947
uvrD PAM621 ATP-dependent DNA helicasechromosome CDS711332 2244 + 0.32041
uvrD PAM505 ATP-dependent DNA helicasechromosome CDS578686 2622 - 0.202899
uvrD PAM315 ATP-dependent DNA helicasechromosome CDS360616 3117 + 0.196663
uvrD PAM559 ATP-dependent DNA helicasechromosome CDS632510 2541 + 0.199134
uvrD PAM527 ATP-dependent DNA helicasechromosome CDS600552 3117 - 0.196343