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2024-04-29 22:44:28

Gene list

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COG category: Replication, recombination and repair
Organism: Bacillus clausii KSM-K16, KSM-K16

Number of genes found: 165

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bacillus clausii KSM-K16, KSM-K16
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ABC0889 conserved hypothetical proteinchromosome CDS964371 804 - 0.470149
NA ABC0639 transposase, IS605/IS200 familychromosome CDS697895 453 - 0.384106
NA ABC2378 N6-adenine-specific DNA methylasechromosome CDS2507636 552 - 0.460145
NA ABC4018 DNA mismatch repair protein, MutS familychromosome CDS4183555 1938 - 0.462332
NA ABC3319 serine/threonine protein kinasechromosome CDS3442915 861 - 0.455285
NA ABC2011 N6-adenine-specific DNA methylasechromosome CDS2126053 1140 - 0.453509
NA ABC2865 site-specific recombinase for integration and excisionchromosome CDS2992454 1404 + 0.397436
NA ABC3270 transposase, IS256 familychromosome CDS3395842 1185 - 0.434599
NA ABC0056 conserved hypothetical proteinchromosome CDS72393 264 + 0.458333
NA ABC1402 transposase, IS256 familychromosome CDS1516674 1185 - 0.434599
NA ABC2754 transposase fragment, IS605 familychromosome CDS2888353 498 - 0.375502
NA ABC4053 conserved hypothetical proteinchromosome CDS4226866 429 - 0.407925
NA ABC2583 ATP-dependent exoDNAse beta subunitchromosome CDS2707226 2592 - 0.46412
NA ABC3943 ATP-dependent RNA helicasechromosome CDS4100310 1482 - 0.497301
NA ABC3591 conserved hypothetical proteinchromosome CDS3741786 390 - 0.417949
NA ABC0244 transposasechromosome CDS269260 1545 + 0.457605
NA ABC2195 chromosome segregation ATPasechromosome CDS2320872 663 - 0.499246
NA ABC0826 phosphohydrolase, MutT/nudix familychromosome CDS898864 483 + 0.333333
NA ABC3177 hypothetical proteinchromosome CDS3298817 261 - 0.398467
NA ABC2853 DNA replication proteinchromosome CDS2982801 837 - 0.454002
NA ABC3593 exonuclease, RecB familychromosome CDS3743113 633 - 0.447077
NA ABC2884 phosphohydrolase, MutT/nudix familychromosome CDS3013976 483 - 0.480331
NA ABC3037 7,8-dihydro-8-oxoguanine-triphosphatase, MutT/nudix familychromosome CDS3158347 489 - 0.460123
NA ABC1309 A/G-specific adenine DNA glycosylasechromosome CDS1428438 1158 + 0.443869
NA ABC1429 conserved hypothetical proteinchromosome CDS1542798 711 - 0.407876
NA ABC1588 ATP-dependent exoDNAse alpha subunitchromosome CDS1712378 2286 + 0.468941
NA ABC1325 phage-related integrase/recombinasechromosome CDS1451053 966 + 0.362319
NA ABC0103 serine/threonine protein kinasechromosome CDS120774 984 + 0.462398
NA ABC2596 uracil-DNA glycosylasechromosome CDS2722583 645 - 0.482171
NA ABC1612 NTP pyrophosphohydrolases including oxidative damage repair enzymeschromosome CDS1738772 615 - 0.44878
NA ABC3979 DNA gyrase inhibitorchromosome CDS4143188 360 - 0.316667
NA ABC0461 phosphohydrolase, MutT/nudix familychromosome CDS514635 396 - 0.371212
NA ABC3318 hypothetical proteinchromosome CDS3442288 507 - 0.4714
NA ABC2564 DNA/RNA helicase, SNF2 familychromosome CDS2685987 2994 + 0.46994
NA ABC2584 conserved hypothetical proteinchromosome CDS2709783 2703 - 0.485017
NA ABC3629 transposase fragment, IS660 familychromosome CDS3782611 267 + 0.486891
NA ABC1697 ATP-dependent RNA helicasechromosome CDS1825306 1362 + 0.477974
NA ABC2119 DNA topoisomerase IA TopBchromosome CDS2239965 2148 - 0.445065
NA ABC2813 transposasechromosome CDS2945480 1197 - 0.439432
NA ABC1400 DNA helicasechromosome CDS1515205 3292 + 0.374848
NA ABC3432 transposase, IS605/IS200 familychromosome CDS3559806 453 - 0.384106
NA ABC3139 conserved hypothetical proteinchromosome CDS3266568 801 - 0.449438
NA ABC2917 DNA-binding protein HUchromosome CDS3042271 273 + 0.432234
NA ABC1601 conserved hypothetical proteinchromosome CDS1724821 1809 - 0.44555
NA ABC1328 phage terminase-like protein small subunitchromosome CDS1454536 477 + 0.385744
NA ABC2013 transposase, IS605 familychromosome CDS2127652 1107 - 0.426378
NA ABC1281 transposase, IS605/IS200 familychromosome CDS1402934 531 + 0.387947
NA ABC1163 transposase, IS256 familychromosome CDS1268936 1185 + 0.434599
NA ABC2166 site-specific recombinasechromosome CDS2284963 663 - 0.434389
NA ABC2197 conserved hypothetical proteinchromosome CDS2321775 1437 - 0.48991
NA ABC1594 holliday junction resolvasechromosome CDS1720059 429 + 0.459207
NA ABC0822 adenine-specific DNA methylasechromosome CDS892923 1212 + 0.327558
NA ABC0823 transposase, IS256 familychromosome CDS894841 1185 + 0.434599
NA ABC2846 phage-related proteinchromosome CDS2977722 495 - 0.488889
NA ABC3671 hypothetical proteinchromosome CDS3828243 186 - 0.403226
NA ABC2014 ribonuclease HIchromosome CDS2129695 402 - 0.440298
NA ABC1370 phage-related proteinchromosome CDS1488620 531 + 0.404896
NA ABC3794 transposasechromosome CDS3956979 426 - 0.392019
NA ABC2949 conserved hypothetical proteinchromosome CDS3071040 543 + 0.471455
NA ABC3826 DNA polymerase IV DinBchromosome CDS3986483 1245 - 0.473092
NA ABC2840 terminase small subunit G1pchromosome CDS2972837 438 - 0.504566
NA ABC4086 conserved hypothetical proteinchromosome CDS4264689 756 - 0.281746
NA ABC3269 hypothetical proteinchromosome CDS3394939 525 - 0.358095
NA ABC2182 site-specific recombinase, phage integrase familychromosome CDS2306123 1008 + 0.488095
NA ABC3926 conserved hypothetical proteinchromosome CDS4082192 717 - 0.481172
NA ABC0595 hypothetical proteinchromosome CDS653758 432 + 0.37037
NA ABC1698 endonuclease IVchromosome CDS1826684 879 + 0.43686
NA ABC1205 transposase, IS256 familychromosome CDS1314200 1185 - 0.434599
NA ABC2509 ATP-dependent DNA helicase, UvrD/REP familychromosome CDS2630277 2292 + 0.465096
NA ABC3112 conserved hypothetical proteinchromosome CDS3239038 207 + 0.439614
NA ABC0846 excinuclease ABC subunit Achromosome CDS915578 2256 - 0.488918
NA ABC3592 conserved hypothetical proteinchromosome CDS3742085 1032 - 0.429264
NA ABC1936 3-methyladenine DNA glycosylasechromosome CDS2051272 603 + 0.46932
NA ABC1399 conserved hypothetical proteinchromosome CDS1513188 2013 + 0.374069
NA ABC0199 conserved hypothetical proteinchromosome CDS214191 588 + 0.362245
NA ABC2169 DNA polymerase IV DinBchromosome CDS2288848 1125 - 0.448
NA ABC0602 conserved hypothetical proteinchromosome CDS659379 549 - 0.331512
NA ABC3594 conserved hypothetical proteinchromosome CDS3743762 858 - 0.432401
NA ABC1583 ATPase, AAA familychromosome CDS1707392 1263 - 0.490895
NA ABC2849 site-specific DNA-methyltransferasechromosome CDS2980142 861 - 0.481998
NA ABC3551 hypothetical proteinchromosome CDS3695638 843 + 0.432977
NA ABC2109 ATP-dependent DNA helicase RecSchromosome CDS2227413 2094 - 0.463706
NA ABC2198 DNA repair exonucleasechromosome CDS2323198 993 - 0.48137
NA ABC0973 hypothetical proteinchromosome CDS1057651 273 - 0.373626
NA ABC2741 adenine-specific methyltransferasechromosome CDS2875693 987 - 0.432624
NA ABC2279 DNA processing protein, Smf familychromosome CDS2404369 912 - 0.480263
NA ABC0755 DNA-3-methyladenine glycosylase Ichromosome CDS828358 531 - 0.461394
NA ABC2911 ATP-dependent RNA helicasechromosome CDS3036822 1137 - 0.467898
NA ABC2817 hypothetical proteinchromosome CDS2948563 291 - 0.415808
NA ABC2496 DNA/RNA helicase, SNF2 familychromosome CDS2620117 1680 + 0.439286
NA ABC1771 6-O-methylguanine DNA methyltransferasechromosome CDS1893016 312 + 0.544872
NA ABC3778 excinuclease ABC subunit Achromosome CDS3938073 2437 + 0.508822
NA ABC3807 transposase fragmentchromosome CDS3967390 330 + 0.454545
NA ABC2848 single-strand DNA-binding proteinchromosome CDS2979546 423 - 0.446809
NA ABC2545 transposase fragment, IS605 familychromosome CDS2665009 168 - 0.410714
NA ABC0538 hypothetical proteinchromosome CDS588357 390 + 0.417949
NA ABC2105 5'-3' exonucleasechromosome CDS2224717 909 + 0.454345
NA ABC0067 deoxyribonuclease, TatD familychromosome CDS85832 777 + 0.459459
NA ABC3997 conserved hypothetical proteinchromosome CDS4164220 636 + 0.451258
NA ABC0537 conserved hypothetical proteinchromosome CDS585400 2682 - 0.469799
NA ABC3696 transposase, IS30 familychromosome CDS3851143 399 - 0.446115
adaB ABC3154 methylated-DNA-[protein]-cysteineS-methyltransfe rasechromosome CDS3279447 534 + 0.43633
alkA ABC3152 DNA-3-methyladenine glycosylase IIchromosome CDS3277682 912 - 0.368421
codV ABC2276 site-specific tyrosine recombinasechromosome CDS2399771 903 - 0.467331
comEA ABC1646 late competence protein ComEAchromosome CDS1774436 615 + 0.469919
comFA ABC3084 late competence protein ComFAchromosome CDS3204305 1356 - 0.467552
deaD ABC2200 ATP-dependent RNA helicasechromosome CDS2325666 1614 - 0.483271
dinG ABC2063 ATP-dependent DNA helicase DinGchromosome CDS2182082 2829 - 0.457759
dnaA ABC0001 chromosome replication initiator protein DnaAchromosome CDS183 1356 + 0.429204
dnaB ABC2701 chromosome replication initiation/membrane attachment protein DnaBchromosome CDS2834135 1443 - 0.462231
dnaC ABC4101 replicative DNA helicasechromosome CDS4283550 1362 - 0.505874
dnaD ABC2058 chromosome replication initiation protein DnaDchromosome CDS2177537 702 - 0.44302
dnaE ABC2724 DNA polymerase III alpha subunit DnaEchromosome CDS2858631 3288 - 0.469891
dnaG ABC1689 DNA primase DnaGchromosome CDS1817243 1812 + 0.471854
dnaI ABC2700 primosome component DnaIchromosome CDS2833218 930 - 0.441935
dnaN ABC0002 DNA-directed DNA polymerase III beta subunit DnaNchromosome CDS1708 1143 + 0.413823
dnaX ABC0037 DNA-directed DNA polymerase III gamma and tau DnaXchromosome CDS48867 1683 + 0.459299
exoA ABC1955 exodeoxyribonuclease IIIchromosome CDS2070851 783 + 0.467433
gyrA ABC0007 DNA gyrase subunit Achromosome CDS6654 2493 + 0.465704
gyrB ABC0006 DNA gyrase subunit Bchromosome CDS4680 1926 + 0.470405
hbs ABC1628 DNA-binding protein HUchromosome CDS1760205 276 - 0.42029
holA ABC1650 DNA polymerase III delta subunit HolAchromosome CDS1778796 1023 + 0.464321
holB ABC0052 DNA polymerase III delta' subunit HolBchromosome CDS69377 999 + 0.477477
kapB ABC2031 kinase-associated lipoprotein Bchromosome CDS2147260 369 - 0.463415
ligA ABC1087 DNA ligasechromosome CDS1178888 2016 + 0.488591
ligB ABC2809 ATP-dependent DNA ligasechromosome CDS2942719 834 + 0.423261
mfd ABC0083 transcription-repair coupling factorchromosome CDS98869 3543 + 0.451312
mutL ABC2186 DNA mismatch repair protein MutLchromosome CDS2309270 1965 - 0.472774
mutM ABC2708 formamidopyrimidine-DNA glycosylasechromosome CDS2839920 831 - 0.469314
mutS ABC2187 DNA mismatch repair protein MutSchromosome CDS2311259 2616 - 0.483563
mutSB ABC2675 DNA mismatch repair protein, MutS familychromosome CDS2804902 2364 - 0.47335
nth ABC2057 endonuclease IIIchromosome CDS2176866 660 - 0.436364
nudF ABC1778 ADP-ribose pyrophosphatasechromosome CDS1898727 540 + 0.475926
ogt ABC1467 methylated-DNA-[protein]-cysteineS-methyltransfe rasechromosome CDS1584997 528 + 0.443182
parC ABC1988 DNA topoisomerase IIA subunit Achromosome CDS2098869 2424 - 0.469884
parE ABC1989 DNA topoisomerase IIA subunit Bchromosome CDS2101293 1971 - 0.489092
pcrA ABC1086 ATP-dependent DNA helicase, UvrD/REP familychromosome CDS1176616 2256 + 0.470301
polA ABC2709 DNA-directed DNA polymerase Ichromosome CDS2840762 2634 - 0.454442
polC ABC2233 DNA polymerase III alpha subunit PolCchromosome CDS2359158 4293 - 0.461682
priA ABC2319 primosomal replication factor Ychromosome CDS2442858 2391 - 0.482643
radC ABC2615 DNA repair protein RadCchromosome CDS2736636 693 - 0.457431
recA ABC2199 recombination protein Achromosome CDS2324383 1053 - 0.482431
recF ABC0004 DNA replication and repair protein RecFchromosome CDS3236 1119 + 0.453083
recG ABC2305 ATP-dependent DNA helicase RecGchromosome CDS2428534 2046 - 0.478983
recJ ABC1568 single-strand DNA-specific exonucleasechromosome CDS1688060 2358 + 0.47922
recN ABC2459 DNA repair protein RecNchromosome CDS2586860 1698 - 0.446408
recO ABC1683 DNA repair protein RecOchromosome CDS1810946 771 + 0.446174
recR ABC0039 recombinational DNA repair protein RecRchromosome CDS50889 600 + 0.45
recS ABC1846 ATP-dependent DNA helicase RecSchromosome CDS1963562 1503 + 0.47505
ripX ABC1782 site-specific tyrosine recombinasechromosome CDS1901056 894 + 0.455257
rnhB ABC2284 ribonuclease HIIchromosome CDS2409239 780 - 0.482051
rnmV ABC0069 ribonuclease M5chromosome CDS88033 684 + 0.46345
rsfA ABC1582 prespore specific transcriptional activator RsfAchromosome CDS1706605 630 - 0.431746
ruvA ABC1554 holliday junction DNA helicase RuvAchromosome CDS1677514 600 + 0.436667
ruvB ABC1555 holliday junction DNA helicase RuvBchromosome CDS1678129 1002 + 0.520958
splB ABC2488 spore photoproduct lyasechromosome CDS2609718 1026 - 0.433723
ssb ABC4106 single-strand DNA-binding protein SSBchromosome CDS4288801 486 - 0.479424
topA ABC2278 DNA topoisomerase IA TopAchromosome CDS2402202 2073 - 0.441389
topB ABC3953 DNA topoisomerase IA TopBchromosome CDS4110891 2190 - 0.478082
ung ABC3930 uracil-DNA glycosylasechromosome CDS4086344 699 - 0.467811
uvrA ABC3058 excinuclease ABC subunit A UvrAchromosome CDS3176195 2874 - 0.478427
uvrB ABC3059 excinuclease ABC subunit B UvrBchromosome CDS3179078 1983 - 0.454866
uvrC ABC2667 excinuclease ABC subunit C UrvCchromosome CDS2796725 1785 - 0.440896
xseA ABC2465 exodeoxyribonuclease VII large subunitchromosome CDS2593321 1377 - 0.493827
xseB ABC2464 exodeoxyribonuclease VII small subunitchromosome CDS2593089 240 - 0.445833