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2024-05-04 03:49:48

Gene list

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COG category: Replication, recombination and repair
Organism: Nocardia farcinica IFM 10152, IFM 10152

Number of genes found: 243

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Nocardia farcinica IFM 10152, IFM 10152
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA nfa44370 putative transposasechromosome CDS4604004 246 + 0.638211
NA pnf140 putative recombinasepNF1 CDS2967 1293 - 0.683681
NA nfa52080 putative heparin-binding hemagglutininchromosome CDS5503037 666 - 0.725225
NA nfa28850 putative transposasechromosome CDS3070716 1047 - 0.659981
NA nfa37070 hypothetical proteinchromosome CDS3921283 1047 - 0.730659
NA pnf1950 putative recombinasepNF1 CDS113499 1062 + 0.677024
NA nfa2340 putative DNA cytosine methyltransferasechromosome CDS244229 1149 - 0.735422
NA nfa40370 hypothetical proteinchromosome CDS4187226 1779 - 0.666667
NA nfa46680 putative serine/threonine protein kinasechromosome CDS4868913 1716 - 0.761072
NA nfa21320 hypothetical proteinchromosome CDS2302099 519 + 0.761079
NA nfa38910 putative phage integrasechromosome CDS4104268 1317 - 0.629461
NA nfa40430 putative DNA polymerasechromosome CDS4192681 690 - 0.653623
NA nfa45730 putative ATP-dependent RNA helicasechromosome CDS4755923 3447 + 0.741514
NA nfa37650 putative helicasechromosome CDS3982580 1728 + 0.725694
NA nfa50690 hypothetical proteinchromosome CDS5368631 765 - 0.715033
NA nfa25590 hypothetical proteinchromosome CDS2727596 1002 - 0.703593
NA nfa56150 putative DNA polymerase IV family proteinchromosome CDS5954376 1068 - 0.714419
NA nfa43950 putative excision nuclease ABC subunitchromosome CDS4552577 2388 + 0.684255
NA nfa44240 hypothetical proteinchromosome CDS4586562 708 - 0.649718
NA nfa34270 hypothetical proteinchromosome CDS3631766 1080 - 0.724074
NA nfa20060 putative ADP-ribose pyrophosphatasechromosome CDS2183317 666 + 0.743243
NA nfa13280 putative formamidopyrimidine-DNA glycosylasechromosome CDS1484784 798 + 0.730576
NA nfa39280 putative transposasechromosome CDS4130850 894 + 0.694631
NA nfa2870 putative serine/threonine protein kinasechromosome CDS299431 3438 + 0.719314
NA nfa31920 putative serine/threonine protein kinasechromosome CDS3386521 1623 - 0.763401
NA nfa36430 hypothetical proteinchromosome CDS3854430 543 - 0.679558
NA nfa55270 hypothetical proteinchromosome CDS5854291 1338 + 0.707025
NA nfa27290 hypothetical proteinchromosome CDS2897222 636 - 0.737421
NA nfa810 putative serine/threonine protein kinasechromosome CDS62995 1524 - 0.728346
NA nfa13120 putative transposasechromosome CDS1468521 906 - 0.669978
NA nfa20580 putative transposasechromosome CDS2237805 321 - 0.669782
NA nfa36590 hypothetical proteinchromosome CDS3873430 1041 + 0.717579
NA nfa42100 putative histone-like DNA-binding proteinchromosome CDS4360616 699 - 0.67525
NA nfa2840 putative DNA polymerase III gamma subunitchromosome CDS292915 2478 + 0.742938
NA pnf2210 putative recombinasepNF2 CDS18383 936 + 0.705128
NA nfa6770 putative ATP-dependent DNA ligasechromosome CDS700299 2427 + 0.711166
NA nfa52520 putative ATP-dependent DNA ligasechromosome CDS5549367 1572 - 0.744275
NA nfa45380 putative DNA helicasechromosome CDS4710650 3555 - 0.751899
NA nfa20570 putative transposasechromosome CDS2237266 411 - 0.664234
NA nfa39940 hypothetical proteinchromosome CDS4169397 279 + 0.727599
NA nfa6450 putative transposasechromosome CDS668303 894 - 0.696868
NA nfa25160 putative RNA helicasechromosome CDS2680563 1557 - 0.771997
NA pnf2390 hypothetical proteinpNF2 CDS36959 2847 + 0.700738
NA nfa29070 putative DNA ligasechromosome CDS3089136 1992 + 0.724398
NA nfa9040 putative serine/threonine protein kinasechromosome CDS1006060 1125 - 0.732444
NA nfa45350 hypothetical proteinchromosome CDS4708102 900 - 0.715556
NA nfa13010 putative MutT family proteinchromosome CDS1454207 399 + 0.684211
NA nfa10830 putative ATP-dependent helicasechromosome CDS1200786 2013 - 0.737705
NA nfa9770 putative endonuclease VIIIchromosome CDS1081632 780 + 0.714103
NA nfa15600 putative phage integrasechromosome CDS1706994 873 - 0.696449
NA nfa29400 putative ATP-dependent DNA ligasechromosome CDS3121163 963 - 0.711319
NA nfa23650 putative serine/threonine protein kinasechromosome CDS2527983 1809 - 0.745716
NA nfa28360 putative DNA glycosylasechromosome CDS3022429 555 - 0.706306
NA nfa24260 putative serine/threonine protein kinasechromosome CDS2590437 1590 - 0.739623
NA nfa19900 putative 3-methylpurine DNA glycosylasechromosome CDS2161117 639 + 0.763693
NA pnf2610 putative transposasepNF2 CDS60940 234 + 0.705128
NA nfa53440 putative serine/threonine protein kinasechromosome CDS5649229 2352 + 0.73852
NA nfa36210 hypothetical proteinchromosome CDS3834570 501 - 0.670659
NA nfa36790 hypothetical proteinchromosome CDS3894739 672 - 0.727679
NA nfa56460 putative MutT family proteinchromosome CDS5987079 462 + 0.679654
NA nfa44440 hypothetical proteinchromosome CDS4610603 2817 - 0.638978
NA nfa46840 hypothetical proteinchromosome CDS4885203 3342 + 0.754937
NA nfa13860 putative transposasechromosome CDS1554465 879 + 0.699659
NA nfa9060 hypothetical proteinchromosome CDS1008179 1578 + 0.786439
NA nfa15090 putative transposasechromosome CDS1670677 1221 - 0.649468
NA pnf2460 putative resolvasepNF2 CDS47853 552 + 0.677536
NA nfa18440 putative serine/threonine protein kinasechromosome CDS2017127 1596 + 0.713659
NA pnf2600 putative recombinasepNF2 CDS59804 1038 + 0.710019
NA nfa36260 putative alkylated DNA repair proteinchromosome CDS3839115 633 + 0.723539
NA nfa32380 hypothetical proteinchromosome CDS3440417 690 - 0.74058
NA nfa13040 hypothetical proteinchromosome CDS1457989 270 + 0.722222
NA nfa44410 putative transposasechromosome CDS4605116 369 + 0.666667
NA pnf2570 putative transposasepNF2 CDS57571 696 + 0.683908
NA nfa13940 hypothetical proteinchromosome CDS1567299 966 + 0.736025
NA nfa12540 hypothetical proteinchromosome CDS1395519 2832 + 0.638771
NA nfa3900 putative serine/threonine protein kinasechromosome CDS405447 2250 - 0.744
NA nfa23560 hypothetical proteinchromosome CDS2520786 807 - 0.757125
NA pnf2830 putative recombinasepNF2 CDS77532 1077 + 0.675952
NA pnf2750 putative DNA methyltransferasepNF2 CDS71302 1626 - 0.705412
NA pnf2850 hypothetical proteinpNF2 CDS78937 1623 + 0.680222
NA nfa44450 putative helicasechromosome CDS4613532 3411 - 0.655526
NA pnf1660 putative recombinasepNF1 CDS75197 1560 - 0.680769
NA nfa42900 hypothetical proteinchromosome CDS4443988 840 - 0.741667
NA nfa25600 putative ATP-dependent DNA ligasechromosome CDS2728594 1089 - 0.705234
NA nfa9860 putative serine/threonine protein kinasechromosome CDS1092197 1131 + 0.749779
NA nfa17220 putative DNA polymerase III subunitchromosome CDS1872789 1797 + 0.750696
NA nfa49050 putative DNasechromosome CDS5119768 828 - 0.72343
NA nfa50200 putative formamidopyrimidine-DNA glycosylasechromosome CDS5234919 870 - 0.706897
NA nfa44220 hypothetical proteinchromosome CDS4584578 1314 - 0.671233
NA nfa44390 putative transposasechromosome CDS4604557 399 + 0.686717
NA pnf11080 hypothetical proteinpNF1 CDS128519 6462 + 0.673321
NA nfa47770 putative transposasechromosome CDS4988383 567 + 0.70194
NA nfa17330 putative serine/threonine protein kinasechromosome CDS1883646 1956 - 0.726994
NA nfa53680 putative methylated-DNA:protein-cysteine methyltransferasechromosome CDS5672651 546 + 0.74359
NA nfa44360 putative transposasechromosome CDS4603467 366 - 0.650273
NA nfa44490 hypothetical proteinchromosome CDS4618666 639 + 0.641628
NA nfa36450 putative AAA ATPasechromosome CDS3857715 1356 - 0.722714
NA nfa20640 putative transposasechromosome CDS2244167 1032 - 0.659884
NA nfa33070 putative transposasechromosome CDS3507551 975 + 0.665641
NA nfa54140 putative transcriptional regulatorchromosome CDS5724515 2505 + 0.756487
NA pnf1910 hypothetical proteinpNF1 CDS108650 1563 - 0.660269
NA nfa43270 putative transporterchromosome CDS4492107 408 + 0.693627
NA nfa230 hypothetical proteinchromosome CDS22004 1302 + 0.703533
NA nfa24250 putative serine/threonine protein kinasechromosome CDS2588784 1638 - 0.761905
NA nfa28710 putative transposasechromosome CDS3058332 396 + 0.646465
NA nfa26700 putative DNA polymerase IV family proteinchromosome CDS2837743 1302 - 0.742704
NA nfa13200 hypothetical proteinchromosome CDS1477152 516 - 0.732558
NA nfa45390 putative helicasechromosome CDS4714201 3768 - 0.759023
NA nfa46690 putative endonuclease IVchromosome CDS4870791 771 + 0.687419
NA nfa39070 hypothetical proteinchromosome CDS4112733 366 - 0.595628
NA nfa90 putative phage integrasechromosome CDS13977 1197 - 0.704261
NA nfa41900 hypothetical proteinchromosome CDS4336683 567 - 0.770723
NA nfa11850 putative transposasechromosome CDS1313478 894 - 0.694631
NA pnf1100 hypothetical proteinpNF1 CDS8486 1686 - 0.696323
NA nfa53410 hypothetical proteinchromosome CDS5645664 729 - 0.750343
NA nfa45330 putative ATP-dependent DNA helicasechromosome CDS4705542 2151 - 0.732682
NA nfa55830 hypothetical proteinchromosome CDS5919882 2373 + 0.708386
NA nfa6350 hypothetical proteinchromosome CDS656502 2298 - 0.748042
NA nfa30300 putative excision nuclease ABC subunitchromosome CDS3216457 2265 + 0.704636
NA nfa13910 putative transposasechromosome CDS1564631 879 + 0.697383
NA nfa13680 putative helicasechromosome CDS1532177 2124 - 0.732109
NA nfa26750 putative MutT family proteinchromosome CDS2842883 417 + 0.690647
NA nfa31600 putative 5'-3' exonucleasechromosome CDS3354238 981 + 0.740061
NA nfa39130 putative phage tailchromosome CDS4117916 5391 - 0.646448
NA nfa3500 hypothetical proteinchromosome CDS359450 720 + 0.738889
NA nfa56590 putative membrane proteinchromosome CDS6001250 3774 + 0.706412
NA nfa41430 hypothetical proteinchromosome CDS4290601 384 - 0.695312
NA nfa8550 putative serine/threonine protein kinasechromosome CDS951011 1581 - 0.683744
NA nfa380 hypothetical proteinchromosome CDS27896 489 + 0.715746
NA nfa36710 hypothetical proteinchromosome CDS3887256 309 - 0.68932
NA nfa26240 putative integrasechromosome CDS2794177 1203 - 0.74813
NA nfa28720 putative transposasechromosome CDS3058675 750 + 0.637333
NA nfa48360 putative transposasechromosome CDS5050579 894 - 0.694631
NA nfa44400 putative transposasechromosome CDS4604835 285 + 0.684211
NA nfa42450 putative serine/threonine protein kinasechromosome CDS4394370 2424 - 0.75
NA nfa40330 putative DNA methyltransferasechromosome CDS4184983 666 - 0.671171
NA nfa27200 putative serine/threonine protein kinasechromosome CDS2887872 2259 - 0.719345
NA nfa48420 hypothetical proteinchromosome CDS5055858 228 + 0.714912
NA nfa37840 putative helicasechromosome CDS4003409 2499 + 0.702281
NA pnf1170 putative integrasepNF1 CDS13605 1671 + 0.6924
NA nfa23630 hypothetical proteinchromosome CDS2526124 792 + 0.681818
NA nfa42510 putative serine/threonine protein kinasechromosome CDS4402675 2829 - 0.747967
NA nfa10310 putative helicasechromosome CDS1133195 2871 + 0.725183
NA nfa49810 hypothetical proteinchromosome CDS5192872 636 + 0.713836
NA nfa17790 putative DNA polymerase IV family proteinchromosome CDS1937241 1392 + 0.739224
NA nfa46670 putative serine/threonine protein kinasechromosome CDS4867056 1725 - 0.704928
NA nfa43770 hypothetical proteinchromosome CDS4537947 993 - 0.734139
NA pnf2310 putative transposasepNF2 CDS28652 3018 + 0.678926
NA pnf2300 putative multimer resolution proteinpNF2 CDS28133 450 - 0.691111
NA nfa42710 hypothetical proteinchromosome CDS4424332 1410 + 0.643972
NA nfa28840 putative recombinasechromosome CDS3070002 726 + 0.621212
NA nfa19270 hypothetical proteinchromosome CDS2102555 1032 + 0.676357
NA nfa2790 hypothetical proteinchromosome CDS286941 582 + 0.675258
NA nfa37690 hypothetical proteinchromosome CDS3986310 1734 - 0.719723
NA nfa9310 putative exonucleasechromosome CDS1033633 780 + 0.701282
NA nfa7110 putative phage integrasechromosome CDS734002 1212 + 0.64604
NA nfa14940 hypothetical proteinchromosome CDS1663724 1254 + 0.670654
NA nfa46190 hypothetical proteinchromosome CDS4806392 519 - 0.755299
NA nfa40450 putative phage recombinasechromosome CDS4193574 888 - 0.647523
NA nfa2390 putative phage integrasechromosome CDS248379 1185 - 0.686076
NA nfa56570 hypothetical proteinchromosome CDS5997057 537 + 0.690875
NA nfa15250 hypothetical proteinchromosome CDS1681779 1932 + 0.666149
NA nfa31830 hypothetical proteinchromosome CDS3377068 909 + 0.737074
NA nfa45770 putative endonuclease Vchromosome CDS4761791 681 + 0.753304
NA nfa31620 putative ATP-dependent RNA helicasechromosome CDS3356142 2700 - 0.721482
NA nfa11810 hypothetical proteinchromosome CDS1309952 708 + 0.751412
NA nfa3480 putative endonuclease IIIchromosome CDS357795 843 + 0.673784
NA nfa40460 putative phage proteinchromosome CDS4194461 990 - 0.664646
NA pnf2140 hypothetical proteinpNF2 CDS9773 3012 + 0.723772
NA pnf1970 hypothetical proteinpNF1 CDS114889 1623 + 0.680222
NA pnf1210 putative resolvasepNF1 CDS18705 1299 - 0.706697
NA nfa6290 putative DNA helicasechromosome CDS650194 1659 + 0.691983
NA nfa37720 hypothetical proteinchromosome CDS3989652 414 + 0.736715
NA nfa46660 putative serine/threonine protein kinasechromosome CDS4865406 1647 - 0.723133
NA pnf2360 putative resolvasepNF2 CDS34849 669 + 0.633782
NA nfa3910 putative serine/threonine protein kinasechromosome CDS407693 2934 - 0.726312
NA nfa13820 putative DNA-binding proteinchromosome CDS1547034 1599 + 0.771732
NA nfa13650 hypothetical proteinchromosome CDS1530555 963 - 0.692627
NA nfa47910 putative methylated-DNA:protein-cysteine methyltransferasechromosome CDS5001334 516 + 0.757752
NA nfa47760 putative transposasechromosome CDS4988055 522 + 0.706897
NA nfa44830 putative helicasechromosome CDS4646436 1866 - 0.703108
NA nfa56060 hypothetical proteinchromosome CDS5944688 984 - 0.744919
NA nfa51530 putative transcriptional regulatorchromosome CDS5454488 216 + 0.699074
NA nfa8000 hypothetical proteinchromosome CDS869526 570 + 0.738596
NA nfa45410 hypothetical proteinchromosome CDS4718862 297 + 0.781145
NA nfa44480 putative invertasechromosome CDS4618242 399 + 0.62406
NA nfa10710 hypothetical proteinchromosome CDS1185960 732 + 0.669399
NA nfa39810 hypothetical proteinchromosome CDS4164152 651 - 0.683564
NA nfa15170 putative transposasechromosome CDS1675323 1146 + 0.67103
NA nfa3680 putative DNA polymerase III delta' subunitchromosome CDS382796 1233 + 0.738037
NA nfa7990 hypothetical proteinchromosome CDS868870 660 + 0.75303
alkA nfa47900 putative 3-methyladenine DNA glycosylasechromosome CDS4999860 1443 + 0.740818
deaD nfa46830 putative ATP-dependent RNA helicasechromosome CDS4883259 1809 + 0.699281
dnaA nfa10 putative replication initiator proteinchromosome CDS1 1989 + 0.700855
dnaB nfa55760 putative replicative DNA helicasechromosome CDS5909833 2658 + 0.682468
dnaE nfa18000 putative DNA polymerase III alpha subunitchromosome CDS1961862 3591 + 0.670287
dnaE2 nfa9150 putative DNA polymerase III alpha subunitchromosome CDS1016558 3441 + 0.724789
dnaG nfa14700 putative DNA primasechromosome CDS1651199 1908 + 0.701258
dnaN nfa20 putative DNA polymerase III beta subunitchromosome CDS2846 1161 + 0.711456
dnaN2 nfa39660 putative DNA polymerase III beta subunitchromosome CDS4158604 1146 - 0.689354
gyrA nfa70 putative DNA gyrase A subunitchromosome CDS9691 2511 + 0.666667
gyrB nfa60 putative DNA gyrase B subunitchromosome CDS7529 2091 + 0.655667
hrpA nfa37970 putative ATP-dependent helicasechromosome CDS4017527 4032 + 0.716022
lig nfa42650 putative DNA ligasechromosome CDS4417091 2052 - 0.705653
mfd nfa48750 putative transcription-repair coupling factorchromosome CDS5086865 3618 - 0.719458
mutM nfa41830 putative formamidopyrimidine-DNA glycosylasechromosome CDS4331980 885 - 0.722034
mutY nfa4290 putative A/G-specific adenine glycosylasechromosome CDS445596 888 - 0.759009
phr nfa30660 putative deoxyribodipyrimidine photolyasechromosome CDS3252114 1311 + 0.7254
polA nfa18750 putative DNA polymerase Ichromosome CDS2047290 2733 + 0.695573
priA nfa36120 putative primosomal proteinchromosome CDS3822452 2082 - 0.759846
radC nfa9430 putative DNA repair proteinchromosome CDS1045585 693 + 0.75469
recA nfa38430 putative RecA proteinchromosome CDS4062242 1044 - 0.679119
recB nfa25460 putative RecB proteinchromosome CDS2710880 3342 + 0.748354
recC nfa25450 putative RecC proteinchromosome CDS2707545 3339 + 0.762504
recD nfa25470 putative RecD proteinchromosome CDS2714218 1887 + 0.749338
recF nfa30 putative recombination and repair proteinchromosome CDS4063 1167 + 0.716367
recG nfa41940 putative ATP-dependent DNA helicasechromosome CDS4342832 2268 - 0.71164
recN nfa19980 putative DNA repair proteinchromosome CDS2173971 1767 + 0.725523
recO nfa14520 putative DNA repair proteinchromosome CDS1634865 771 + 0.741894
recQ nfa2960 putative ATP-dependent DNA helicasechromosome CDS309323 1626 - 0.726322
recR nfa2950 putative recombination and repair proteinchromosome CDS308598 609 + 0.689655
rnhA nfa56240 putative RNase HIchromosome CDS5964453 546 + 0.723443
rnhB nfa41450 putative RNase HIIchromosome CDS4291410 756 - 0.740741
ruvA nfa36960 putative Holliday junction DNA helicase B subunitchromosome CDS3914268 606 - 0.732673
ruvB nfa36950 putative Holliday junction DNA helicase A subunitchromosome CDS3913188 1074 - 0.722533
ruvC nfa36970 putative Holliday junction nucleasechromosome CDS3914870 570 - 0.729825
sbcC nfa47920 putative ATP-dependent dsDNA exonucleasechromosome CDS5001869 3183 - 0.745209
sbcD nfa47930 putative ATP-dependent dsDNA exonucleasechromosome CDS5005080 1185 - 0.69789
smf nfa41400 putative Rossmann-fold nucleotide-binding proteinchromosome CDS4286906 1179 - 0.744699
ssb nfa55730 putative single-strand binding proteinchromosome CDS5907868 537 + 0.702048
tag nfa47230 putative 3-methyladenine glycosylasechromosome CDS4934060 627 + 0.701754
topA nfa3670 putative DNA topoisomerase Ichromosome CDS379850 2931 + 0.689185
ung nfa42000 putative uracil-DNA-glycosylasechromosome CDS4349958 684 - 0.709064
uvrA nfa19110 putative excision nuclease ABC subunit Achromosome CDS2087519 2949 + 0.687013
uvrB nfa19020 putative excision nuclease ABC subunit Bchromosome CDS2075845 2166 + 0.684211
uvrC nfa35940 putative excision nuclease ABC subunit Cchromosome CDS3804262 2022 - 0.704748
uvrD nfa49950 putative ATP-dependent DNA helicasechromosome CDS5211240 2529 - 0.697113
vsr nfa2330 putative DNA mismatch endonucleasechromosome CDS243762 471 - 0.747346
xerC nfa41390 putative recombinasechromosome CDS4285896 924 - 0.725108
xerD nfa20070 putative recombinasechromosome CDS2183995 951 + 0.741325
xseA nfa47970 putative exodeoxyribonuclease VII large subunitchromosome CDS5009223 1278 + 0.736307
xseB nfa47980 putative exodeoxyribonuclease VII small subunitchromosome CDS5010503 237 + 0.679325
xthA nfa53030 putative exonucleasechromosome CDS5603765 912 + 0.70943