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2024-05-01 11:18:31

Gene list

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COG category: Replication, recombination and repair
Organism: Nitrosomonas europaea ATCC 19718, ATCC 19718

Number of genes found: 243

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Nitrosomonas europaea ATCC 19718, ATCC 19718
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA NE0451 Integrase, catalytic corechromosome CDS492364 852 - 0.539906
NA NE1260 Transposase IS911 HTH and LZ regionchromosome CDS1379498 324 + 0.512346
NA NE1107 Transposase IS4 familychromosome CDS1199008 369 + 0.471545
NA NE2097 Integrase, catalytic corechromosome CDS2284248 615 + 0.518699
NA NE2318 hypothetical proteinchromosome CDS2519624 411 - 0.50365
NA NE2011 Transposase IS4 familychromosome CDS2172856 369 + 0.471545
NA NE1366 conserved hypothetical proteinchromosome CDS1488439 696 + 0.488506
NA NE0517 Integrase, catalytic corechromosome CDS555685 951 - 0.521556
NA NE2411 Integrase, catalytic corechromosome CDS2624480 993 + 0.519637
NA NE1182 Helix-turn-helix protein, CopG familychromosome CDS1279707 243 - 0.432099
NA NE0716 Transposase IS4 familychromosome CDS772659 369 + 0.471545
NA NE1398 putative DNA polymerase-related protein, bacteriophage-typechromosome CDS1528877 744 - 0.580645
NA NE1884 possible homolog of eukaryotic DNA ligase IIIchromosome CDS2035978 699 + 0.547926
NA NE1807 putative ATP-dependent RNA helicase proteinchromosome CDS1954496 1374 + 0.53639
NA NE0093 recQ; ATP-dependent DNA helicasechromosome CDS115940 4374 - 0.57636
NA NE2446 Transposase IS4 familychromosome CDS2671639 576 - 0.505208
NA NE0939 Integrase, catalytic corechromosome CDS1024553 1044 - 0.478927
NA NE0112 hypothetical proteinchromosome CDS141738 342 - 0.511696
NA NE0288 Integrase, catalytic corechromosome CDS316357 951 + 0.521556
NA NE2441 hypothetical proteinchromosome CDS2665658 342 + 0.418129
NA NE0981 HhH-GPDchromosome CDS1066782 618 - 0.532362
NA NE0184 NUDIX hydrolasechromosome CDS222534 450 - 0.491111
NA NE2498 hypothetical proteinchromosome CDS2729205 807 - 0.491945
NA NE2504 Transposase IS4 familychromosome CDS2737580 879 - 0.513083
NA NE2228 Integrase, catalytic corechromosome CDS2415225 1044 - 0.479885
NA NE2520 ATP-dependent DNA helicase RecQchromosome CDS2752609 2079 + 0.601251
NA NE2238 Transposase IS200 likechromosome CDS2427598 444 - 0.509009
NA NE1845 Integrase, catalytic corechromosome CDS1992108 1044 + 0.478927
NA NE1557 putative transposasechromosome CDS1692646 360 + 0.508333
NA NE2023 possible transposasechromosome CDS2186571 408 + 0.5
NA NE0934 Integrase, catalytic corechromosome CDS1021050 309 - 0.440129
NA NE2166 UvrD/REP helicasechromosome CDS2351482 3468 - 0.555363
NA NE1523 Integrase, catalytic corechromosome CDS1654581 1044 + 0.478927
NA NE0155 Integrase, catalytic corechromosome CDS179188 906 + 0.593819
NA NE0120 hypothetical proteinchromosome CDS148159 951 - 0.545741
NA NE2521 conserved hypothetical proteinchromosome CDS2754684 1410 + 0.616312
NA NE2200 transposasechromosome CDS2390793 369 + 0.525745
NA NE2309 Adenine specific DNA methylase Modchromosome CDS2504137 1704 - 0.529343
NA NE2274 Transposase IS4 familychromosome CDS2463468 576 + 0.506944
NA NE2470 NUDIX hydrolase:Conserved hypothetical protein 52chromosome CDS2695248 603 - 0.535655
NA NE0188 Integrase, catalytic corechromosome CDS226510 1044 + 0.479885
NA NE0830 DNA mismatch repair protein MutS family, C-terminal domainchromosome CDS901779 1884 + 0.519639
NA NE1053 Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvasechromosome CDS1140158 1320 + 0.543939
NA NE0271 Transposase IS4 familychromosome CDS302885 369 - 0.476965
NA NE0257 Site-specific recombinasechromosome CDS293167 633 - 0.511848
NA NE1470 conserved hypothetical proteinchromosome CDS1605011 384 + 0.513021
NA NE0749 Transposase IS911 HTH and LZ regionchromosome CDS811455 333 - 0.501502
NA NE1174 Uncharacterized protein family UPF0020chromosome CDS1274051 1188 + 0.559764
NA NE1760 Integrase, catalytic corechromosome CDS1902116 1044 + 0.478927
NA NE1586 transposasechromosome CDS1715332 369 - 0.525745
NA NE1925 Integrase, catalytic corechromosome CDS2078725 1044 - 0.479885
NA NE0342 possible transposasechromosome CDS381289 438 - 0.511416
NA NE0562 Integrase, catalytic corechromosome CDS608474 951 + 0.521556
NA NE1740 Transposase IS4 familychromosome CDS1875853 879 - 0.513083
NA NE1521 possible transposasechromosome CDS1653402 474 + 0.49789
NA NE1061 Integrase, catalytic corechromosome CDS1150861 951 - 0.520505
NA NE1093 Transposase IS4 familychromosome CDS1184950 1524 + 0.526903
NA NE0662 Transposase IS4 familychromosome CDS719259 627 + 0.516746
NA NE1880 Integrase, catalytic corechromosome CDS2032033 1044 - 0.479885
NA NE1516 Uncharacterized protein family UPF0006chromosome CDS1649817 765 - 0.526797
NA NE1789 Transposase IS4 familychromosome CDS1932137 576 + 0.506944
NA NE1106 possible transposasechromosome CDS1198601 408 + 0.497549
NA NE0880 probable ATP-dependent DNA helicase-related proteinchromosome CDS959532 1941 - 0.516744
NA NE0110 hypothetical proteinchromosome CDS140382 318 - 0.512579
NA NE0197 conserved hypothetical proteinchromosome CDS234366 327 - 0.437309
NA NE0814 Integrase, catalytic corechromosome CDS884935 1044 - 0.478927
NA NE2024 Transposase IS4 familychromosome CDS2186978 369 + 0.471545
NA NE1840 Integrase, catalytic corechromosome CDS1986878 1044 + 0.478927
NA NE0252 Transposase IS911 HTH and LZ regionchromosome CDS287757 324 + 0.512346
NA NE2178 conserved hypothetical proteinchromosome CDS2365414 2730 - 0.559707
NA NE0519 Transposase IS4 familychromosome CDS556954 576 + 0.506944
NA NE2536 Integrase, catalytic corechromosome CDS2775828 951 + 0.520505
NA NE1630 possible transposasechromosome CDS1762568 408 + 0.504902
NA NE0228 CHC2 zinc fingerchromosome CDS258712 1803 + 0.470882
NA NE1991 Transposase IS4 familychromosome CDS2151773 369 + 0.466125
NA NE0806 hypothetical proteinchromosome CDS875773 648 + 0.445988
NA NE0844 Protein of unknown function DUF48chromosome CDS919923 627 + 0.494418
NA NE1539 hypothetical proteinchromosome CDS1675495 1722 + 0.526132
NA NE1995 Integrase, catalytic corechromosome CDS2155540 852 - 0.539906
NA NE2096 Transposase IS911 HTH and LZ regionchromosome CDS2283635 324 + 0.512346
NA NE0254 Integrase, catalytic corechromosome CDS289300 1044 - 0.478927
NA NE0119 hypothetical proteinchromosome CDS146417 1743 - 0.497418
NA NE0708 Integrase, catalytic corechromosome CDS767637 852 - 0.539906
NA NE1378 Integrase, catalytic corechromosome CDS1499301 1044 - 0.478927
NA NE2190 Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse transcriptase); part of type II intronchromosome CDS2378248 1314 - 0.633942
NA NE1552 Transposase IS4 familychromosome CDS1690373 369 - 0.466125
NA NE0239 Integrase, catalytic corechromosome CDS273266 1044 + 0.479885
NA NE0560 transposasechromosome CDS607648 369 + 0.525745
NA NE2412 transposasechromosome CDS2625692 369 + 0.525745
NA NE0511 hypothetical proteinchromosome CDS549794 246 + 0.48374
NA NE0935 Integrase, catalytic corechromosome CDS1021355 729 - 0.544582
NA NE1990 possible transposasechromosome CDS2151366 408 + 0.502451
NA NE1367 possible ISA0963-4, putative transposasechromosome CDS1489071 411 + 0.46472
NA NE1222 Transposase IS4 familychromosome CDS1331070 750 - 0.504
NA NE0969 possible N6-adenine-specific methylasechromosome CDS1053981 552 - 0.501812
NA NE2108 Integrase, catalytic corechromosome CDS2292950 852 - 0.539906
NA NE2385 Staphylococcus nuclease (SNase) homologueschromosome CDS2591501 876 + 0.515982
NA NE2155 Integrase, catalytic corechromosome CDS2339500 852 - 0.539906
NA NE1667 conserved hypothetical proteinchromosome CDS1804272 447 - 0.52349
NA NE1261 Integrase, catalytic corechromosome CDS1379875 852 + 0.532864
NA NE2447 transposasechromosome CDS2672019 369 - 0.525745
NA NE0719 Uncharacterised protein family UPF0102chromosome CDS774690 357 - 0.546219
NA NE2466 putative lipoproteinchromosome CDS2691464 540 + 0.514815
NA NE2541 Site-specific recombinasechromosome CDS2780172 1356 + 0.623156
NA NE1560 conserved hypothetical proteinchromosome CDS1694061 504 + 0.529762
NA NE0518 transposasechromosome CDS556781 369 + 0.525745
NA NE0340 Integrase, catalytic corechromosome CDS379941 951 - 0.521556
NA NE0845 DUF196chromosome CDS920552 291 + 0.43299
NA NE2445 Integrase, catalytic corechromosome CDS2669025 1044 + 0.478927
NA NE0561 Transposase IS4 familychromosome CDS607821 576 + 0.506944
NA NE2533 Transposase IS911 HTH and LZ regionchromosome CDS2771794 324 - 0.512346
NA NE0245 hypothetical proteinchromosome CDS281568 456 + 0.528509
NA NE2156 Transposase IS911 HTH and LZ regionchromosome CDS2340405 324 - 0.512346
NA NE2098 Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse transcriptase); part of type II intronchromosome CDS2285687 1314 + 0.633942
NA NE1219 UMUC family (DNA-repair)chromosome CDS1327791 1158 - 0.481002
NA NE0121 conserved hypothetical proteinchromosome CDS149114 717 - 0.543933
NA NE2442 Integrase, catalytic corechromosome CDS2666243 1044 - 0.479885
NA NE1351 Integrase, catalytic corechromosome CDS1477435 1044 + 0.477969
NA NE1816 Integrase, catalytic corechromosome CDS1965437 852 + 0.539906
NA NE0711 Uncharacterised protein family UPF0102chromosome CDS769783 357 - 0.52381
NA NE2516 Transposase IS911 HTH and LZ regionchromosome CDS2749422 324 - 0.512346
NA NE1122 conserved hypothetical proteinchromosome CDS1215138 606 - 0.524752
NA NE0447 conserved hypothetical proteinchromosome CDS487118 714 - 0.492997
NA NE2311 possible helicase (Snf2/Rad54 family)chromosome CDS2508925 2898 - 0.587647
NA NE0231 hypothetical proteinchromosome CDS263808 630 - 0.549206
NA NE2414 Integrase, catalytic corechromosome CDS2626458 1044 - 0.478927
NA NE1316 NUDIX hydrolasechromosome CDS1436035 564 - 0.533688
NA NE1698 conserved hypothetical proteinchromosome CDS1828413 972 - 0.505144
NA NE1271 Integrase, catalytic corechromosome CDS1388940 852 + 0.532864
NA NE2012 Integrase, catalytic corechromosome CDS2173285 951 + 0.520505
NA NE0454 Integrase, catalytic corechromosome CDS494466 951 + 0.520505
NA NE0452 Transposase IS911 HTH and LZ regionchromosome CDS493269 324 - 0.512346
NA NE2273 transposasechromosome CDS2463295 369 + 0.525745
NA NE1270 Transposase IS911 HTH and LZ regionchromosome CDS1388563 324 + 0.512346
NA NE0111 Protein of unknown function DUF48chromosome CDS140733 984 - 0.548781
NA NE1631 Transposase IS4 familychromosome CDS1762975 369 + 0.476965
NA NE2028 Integrase, catalytic corechromosome CDS2188842 963 - 0.520249
NA NE1996 Transposase IS911 HTH and LZ regionchromosome CDS2156445 324 - 0.512346
NA NE1522 Transposase IS4 familychromosome CDS1653797 369 + 0.466125
NA NE0162 Integrase, catalytic corechromosome CDS199541 1044 - 0.478927
NA NE1553 possible transposasechromosome CDS1690663 474 - 0.50211
NA NE2413 Transposase IS4 familychromosome CDS2625865 537 + 0.510242
NA NE1815 Transposase IS911 HTH and LZ regionchromosome CDS1965060 324 + 0.512346
NA NE0940 putative DNA transport competence protein, ComEAchromosome CDS1025874 363 - 0.366391
NA NE2469 Transposase IS4 familychromosome CDS2694191 879 - 0.513083
NA NE0134 transposasechromosome CDS160713 972 - 0.505144
NA NE0272 possible transposasechromosome CDS303253 408 - 0.504902
NA NE1132 transposasechromosome CDS1230529 351 - 0.490029
NA NE1853 hypothetical proteinchromosome CDS2001694 663 - 0.500754
NA NE0244 Integrase, catalytic corechromosome CDS280152 1314 - 0.534247
NA NE1348 Integrase, catalytic corechromosome CDS1475472 507 + 0.463511
NA NE0715 possible transposasechromosome CDS772252 408 + 0.497549
NA NE0341 Transposase IS4 familychromosome CDS380952 369 - 0.466125
NA NE1788 transposasechromosome CDS1931964 369 + 0.528455
NA NE1585 Transposase IS4 familychromosome CDS1714952 576 - 0.505208
NA NE1264 Integrase, catalytic corechromosome CDS1383968 1044 - 0.478927
NA NE0098 conserved hypothetical proteinchromosome CDS126117 663 - 0.470588
NA NE2201 Transposase IS4 familychromosome CDS2390966 576 + 0.505208
NA NE2010 possible transposasechromosome CDS2172449 408 + 0.5
NA NE0709 Transposase IS911 HTH and LZ regionchromosome CDS768542 324 - 0.512346
NA NE2483 Integrase, catalytic corechromosome CDS2710395 951 - 0.521556
NA NE2532 Integrase, catalytic corechromosome CDS2770889 852 - 0.539906
NA NE1558 putative transposasechromosome CDS1693067 414 + 0.442029
NA NE0714 Integrase, catalytic corechromosome CDS771266 903 + 0.530454
NA NE2013 hypothetical proteinchromosome CDS2174813 294 - 0.55102
NA NE0744 conserved hypothetical proteinchromosome CDS805211 972 - 0.505144
NA NE0259 hypothetical proteinchromosome CDS294413 798 - 0.5
NA NE2515 Integrase, catalytic corechromosome CDS2748517 852 - 0.539906
NA NE1940 Integrase, catalytic corechromosome CDS2094814 951 - 0.519453
NA NE1347 conserved hypothetical proteinchromosome CDS1474936 696 + 0.487069
NA NE1675 Integrase, catalytic corechromosome CDS1809713 1044 + 0.479885
NA NE2101 hypothetical proteinchromosome CDS2289108 213 + 0.469484
NA NE1843 Integrase, catalytic corechromosome CDS1990579 1011 + 0.523244
NA NE2109 Transposase IS911 HTH and LZ regionchromosome CDS2293855 324 - 0.512346
NA NE0253 Integrase, catalytic corechromosome CDS288134 852 + 0.539906
NA NE0268 Integrase, catalytic corechromosome CDS299643 1044 - 0.479885
NA NE1178 Integrase, catalytic corechromosome CDS1277247 1044 - 0.478927
NA NE0931 conserved hypothetical proteinchromosome CDS1017952 654 + 0.524465
NA NE2232 Integrase, catalytic corechromosome CDS2418813 1044 - 0.478927
ccrB NE0236 Site-specific recombinasechromosome CDS270335 1560 - 0.50641
dnaA NE0001 dnaA; chromosomal replication initiator proteinchromosome CDS211 1380 + 0.488406
dnaB NE0194 dnaB; replicative DNA helicase proteinchromosome CDS232072 1398 - 0.512876
dnaE1 NE1978 dnaE1; DNA polymerase III (alpha chain) proteinchromosome CDS2136454 3510 - 0.54302
dnaN NE0002 DNA polymerase III, beta chainchromosome CDS1791 1122 + 0.486631
dnaQ NE0141 probable DNA polymerase III (epsilon chain) proteinchromosome CDS166020 699 + 0.516452
dnaX NE0433 dnaX; DNA polymerase III (subunits tau and gamma) proteinchromosome CDS470671 1578 + 0.512041
fis NE0875 probable factor-for-inversion-stimulation transcription regulator proteinchromosome CDS954360 243 + 0.444444
gyrA NE0332 DNA gyrase/topoisomerase IV, subunit Achromosome CDS370118 2547 + 0.513153
gyrB NE0003 DNA gyrase, subunit B:DNA topoisomerase II gyrBchromosome CDS2961 2430 + 0.497119
holA NE1137 putative DNA polymerase III (delta subunit) proteinchromosome CDS1232727 1071 - 0.496732
holB NE2180 putative DNA polymerase III (delta' subunit) proteinchromosome CDS2368779 1062 - 0.560264
holC NE0442 putative DNA polymerase III (chi subunit) proteinchromosome CDS481428 390 + 0.530769
hrpA NE0833 HrpA-like helicaseschromosome CDS905417 3756 + 0.537007
hupB NE2207 Bacterial histone-like DNA-binding proteinchromosome CDS2396895 273 - 0.498168
ihfA NE0952 Bacterial histone-like DNA-binding proteinchromosome CDS1037078 309 - 0.430421
ihfB NE1961 Bacterial histone-like DNA-binding proteinchromosome CDS2116967 318 - 0.490566
int NE0450 Phage integrasechromosome CDS490875 879 - 0.492605
intF NE0235 Phage integrasechromosome CDS268953 1251 - 0.552358
intINeu NE2189 Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domainchromosome CDS2376658 972 - 0.5
lig NE1753 NAD-dependent DNA ligasechromosome CDS1890487 2046 + 0.540078
mfd NE0008 mfd: transcription-repair coupling factorchromosome CDS8100 3465 - 0.531313
mutL NE1742 mutL; DNA mismatch repair proteinchromosome CDS1877222 1815 - 0.536088
mutM,fpg NE2552 Formamidopyrimidine-DNA glycolasechromosome CDS2790763 816 + 0.544118
mutS NE1705 mutS; DNA mismatch repair proteinchromosome CDS1839274 2622 + 0.55225
mutY NE0056 HhH-GPDchromosome CDS77027 1134 + 0.503527
nth NE2223 HhH-GPD:Iron-sulfur cluster loop (FCL)chromosome CDS2410645 672 + 0.513393
ntpA NE2253 NUDIX hydrolasechromosome CDS2444258 459 + 0.51634
ogt NE0885 Methylated-DNA--protein-cysteinemethyltransferasechromosome CDS967127 492 - 0.48374
polA NE1468 polA; DNA polymerase I proteinchromosome CDS1601478 2739 - 0.512961
priA NE1505 probable priA; primosomal protein N' (replication factor Y)chromosome CDS1637569 2193 + 0.536252
radC NE1464 DNA repair protein radC familychromosome CDS1598891 675 + 0.493333
rdgC NE0507 putative recombination associated protein rdgCchromosome CDS545683 885 + 0.514124
recA NE1932 RecA bacterial DNA recombination protein:AAA ATPase superfamilychromosome CDS2087356 1032 - 0.516473
recG NE1850 RecG-like helicaseschromosome CDS1997828 2058 - 0.556851
recJ NE0010 recJ: single-stranded-DNA-specific exonucleasechromosome CDS12864 1764 - 0.537982
recN NE1479 ABC transporter:DNA repair protein RecNchromosome CDS1614853 1686 + 0.506524
recQ NE2564 ATP-dependent DNA helicase RecQchromosome CDS2802439 1650 - 0.550303
rhlE NE2040 rhlE; ATP-dependent RNA helicase RhlEchromosome CDS2209232 1497 - 0.504342
rnhA NE0140 probable ribonuclease hi proteinchromosome CDS165523 486 + 0.522634
rnhB NE1707 Ribonuclease HII and HIIIchromosome CDS1842393 654 - 0.530581
ruvA NE0212 probable Holliday junction DNA helicase subunitchromosome CDS247313 588 + 0.498299
ruvB NE0213 ruvB; holliday junction DNA helicase proteinchromosome CDS247919 1041 + 0.526417
ruvC NE0211 Crossover junction endodeoxyribonuclease RuvCchromosome CDS246771 546 + 0.520147
sbcB NE0671 exodeoxyribonuclease Ichromosome CDS729551 1491 + 0.53387
sbcC NE1392 ATP/GTP-binding site motif A (P-loop):ABC transporterchromosome CDS1520301 3264 + 0.530944
sbcD NE1390 Serine/threonine specific protein phosphatase:Exonuclease SbcDchromosome CDS1517676 1242 + 0.528986
smf NE1968 SMF familychromosome CDS2125084 1116 - 0.544803
ssb NE2453 Single-strand binding protein familychromosome CDS2677195 450 - 0.52
sss NE0338 Phage integrase:Phage integrase N-terminal SAM-like domainchromosome CDS378223 966 - 0.561077
tISRso8a NE0154 Transposase IS911 HTH and LZ regionchromosome CDS178919 303 + 0.584158
tnpA NE0835 Transposase Tn3 familychromosome CDS911376 2970 - 0.62963
tnpR NE0751 Site-specific recombinasechromosome CDS813230 561 + 0.502674
tnpR NE0836 Site-specific recombinasechromosome CDS914348 561 - 0.613191
topB NE1966 topB; DNA topoisomerase III proteinchromosome CDS2121919 2499 - 0.4994
uvrA1 NE2455 ABC transporter:Excinuclease ABC A subunitchromosome CDS2679119 2832 + 0.545904
uvrB NE0785 Helicase subunit of the DNA excision repair complexchromosome CDS851792 2088 - 0.493774
uvrC NE0933 uvrC Nuclease subunit of the excinuclease complexchromosome CDS1018826 1815 + 0.534986
uvrD NE1473 UvrD/REP helicasechromosome CDS1607429 2235 - 0.514541
xerD NE1458 Phage integrase:Phage integrase N-terminal SAM-like domainchromosome CDS1593227 957 - 0.519331
xseA NE1172 xseA; exodeoxyribonuclease vII large subunit proteinchromosome CDS1272075 1347 + 0.544172
xseB NE1159 Exonuclease VII, small subunitchromosome CDS1258933 270 + 0.444444
xthA1 NE0023 Exodeoxyribonuclease III:Exodeoxyribonuclease III xthchromosome CDS30420 765 - 0.490196
xthA2 NE2192 Exodeoxyribonuclease III:Exodeoxyribonuclease III xthchromosome CDS2381666 774 - 0.514212