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2024-05-09 09:31:08

Gene list

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COG category: Replication, recombination and repair
Organism: Lactobacillus plantarum WCFS1, WCFS1

Number of genes found: 170

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Lactobacillus plantarum WCFS1, WCFS1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
ISP1 lp_1064 transposase chromosome CDS967144 1263 - 0.4038
ISP1 lp_2164 transposase chromosome CDS1955214 1263 + 0.4038
ISP1 lp_1537 transposase chromosome CDS1403581 1263 - 0.4038
ISP1 lp_3036 transposase chromosome CDS2698344 1263 + 0.4038
ISP1 lp_3308 transposase chromosome CDS2940232 1263 + 0.4038
ISP1 lp_2617 transposase chromosome CDS2333772 1263 - 0.4038
ISP1 lp_1463 transposase chromosome CDS1340810 1263 - 0.4038
ISP2 lp_0216 transposase chromosome CDS198163 1653 + 0.413793
ISP2 lp_0911 transposase chromosome CDS840601 1734 + 0.412918
ISP2 lp_2006 transposase chromosome CDS1811515 1653 - 0.415608
ISP2 lp_3496 transposase chromosome CDS3109403 1671 - 0.412926
ISP2-C lp_3332 transposase, C-terminal fragment chromosome CDS2965370 225 + 0.422222
ISP2-N lp_3331 transposase, N-terminal fragment chromosome CDS2963939 1386 + 0.410534
codV lp_1847 integrase/recombinase chromosome CDS1668926 945 - 0.462434
comEA lp_2131 ComE operon protein 1 chromosome CDS1924140 726 - 0.513774
comFA lp_0735 ATP-dependent DNA helicase/translocase (putative) chromosome CDS672499 1353 + 0.49963
cshA1 lp_1519 chromosome segregation helicase (putative) chromosome CDS1389882 1263 - 0.457641
cshA2 lp_1543 chromosome segregation helicase (putative) chromosome CDS1408815 1377 + 0.475672
cshA3 lp_2337 chromosome segregation helicase (putative) chromosome CDS2113437 1281 + 0.492584
dinG lp_1737 ATP-dependent helicase DinG chromosome CDS1574877 2805 + 0.48164
dinP lp_2280 DNA-damage-inducible protein P chromosome CDS2059934 1101 - 0.467757
dnaA lp_0001 chromosomal replication initiation protein DnaA chromosome CDS1 1368 + 0.445175
dnaB lp_1512 replication initiation and membrane attachment protein DnaB chromosome CDS1383167 1401 + 0.481799
dnaC lp_0014 replicative DNA helicase DnaC chromosome CDS13747 1425 + 0.477193
dnaD lp_1741 DNA replication protein DnaD chromosome CDS1580863 726 + 0.449036
dnaE lp_1899 DNA-directed DNA polymerase III, alpha chain chromosome CDS1714731 3351 - 0.471799
dnaG lp_1963 DNA primase DnaG chromosome CDS1775390 1881 - 0.467305
dnaI lp_1513 primosomal protein DnaI chromosome CDS1384571 936 + 0.46047
dnaN lp_0002 DNA-directed DNA polymerase III, beta chain chromosome CDS1546 1140 + 0.425439
dnaX lp_0698 DNA-directed DNA polymerase III, gamma/tau subunit chromosome CDS642982 1698 + 0.468787
dprA lp_1852 DNA processing protein chromosome CDS1673790 867 - 0.499423
esbB lp_1777 cell wall enzyme chromosome CDS1609565 387 - 0.459948
exoA lp_0812 exodeoxyribonuclease III chromosome CDS751084 765 - 0.458824
fpg lp_1509 formamidopyrimidine-DNA glycosylase chromosome CDS1381161 825 + 0.464242
gyrA lp_0007 DNA gyrase, A subunit chromosome CDS6676 2562 + 0.46292
gyrB lp_0006 DNA gyrase, B subunit chromosome CDS4565 1947 + 0.459168
hbsU lp_1879 DNA-binding protein II chromosome CDS1697626 276 - 0.434783
hexA lp_2298 DNA mismatch repair protein MutS chromosome CDS2073518 2691 - 0.456708
hexB lp_2297 DNA mismatch repair protein HexB chromosome CDS2071311 2037 - 0.486991
holA lp_2128 DNA-directed DNA polymerase III, delta chain chromosome CDS1920296 1062 - 0.468927
holB lp_0705 DNA-directed DNA polymerase III, delta' subunit chromosome CDS647296 1020 + 0.487255
ligA lp_1145 DNA ligase (NAD+) chromosome CDS1040841 2040 + 0.490686
lp_0048 lp_0048 unknown chromosome CDS48877 633 + 0.454976
lp_0119 lp_0119 NTP pyrophosphohydrolase chromosome CDS105689 471 - 0.450106
lp_0308 lp_0308 DNA helicase (putative) chromosome CDS283146 2370 - 0.481857
lp_0366 lp_0366 unknown chromosome CDS333828 447 - 0.519016
lp_0452 lp_0452 unknown chromosome CDS405940 429 + 0.473193
lp_0456 lp_0456 DNAse (putative) chromosome CDS410280 777 + 0.46332
lp_0457 lp_0457 unknown chromosome CDS411043 564 + 0.526596
lp_0624 lp_0624 prophage Lp1 protein 1, integrase chromosome CDS590128 1203 - 0.375727
lp_0641 lp_0641 prophage Lp1 protein 18 chromosome CDS599200 888 + 0.423423
lp_0643 lp_0643 prophage Lp1 protein 20 chromosome CDS600953 933 + 0.426581
lp_0645 lp_0645 prophage Lp1 protein 22 chromosome CDS602166 531 + 0.369115
lp_0647 lp_0647 prophage Lp1 protein 24 chromosome CDS603219 420 + 0.457143
lp_0660 lp_0660 prophage Lp1 protein 37 chromosome CDS607764 597 + 0.40201
lp_0811 lp_0811 DNA-directed DNA polymerase III, epsilon chain (putative) chromosome CDS750485 522 - 0.48659
lp_0864 lp_0864 unknown chromosome CDS804636 420 + 0.442857
lp_0897 lp_0897 NTP pyrophosphohydrolase (putative) chromosome CDS826727 438 + 0.511416
lp_0903 lp_0903 7,8-dihydro-8-oxoguanine-triphosphatase(putative ) chromosome CDS831740 1074 - 0.480447
lp_0941 lp_0941 integrase chromosome CDS873765 918 + 0.3878
lp_0961 lp_0961 unknown chromosome CDS893448 216 + 0.490741
lp_1191 lp_1191 transposase, fragment chromosome CDS1088345 213 - 0.431925
lp_1192 lp_1192 transposase, fragment (putative) chromosome CDS1088479 486 - 0.497942
lp_1194 lp_1194 transposase, fragment (putative) chromosome CDS1089231 348 - 0.502874
lp_1195 lp_1195 transposase, fragment (putative) chromosome CDS1089677 228 - 0.539474
lp_1196 lp_1196 integrase/recombinase, fragment (putative) chromosome CDS1089967 588 - 0.372449
lp_1207 lp_1207 unknown chromosome CDS1100937 201 + 0.348259
lp_1212 lp_1212 transposase chromosome CDS1104023 651 - 0.420891
lp_1213 lp_1213 unknown chromosome CDS1104908 288 - 0.451389
lp_1214 lp_1214 unknown chromosome CDS1105225 381 - 0.401575
lp_1268 lp_1268 integrase/recombinase, fragment (putative) chromosome CDS1153425 561 + 0.43672
lp_1288 lp_1288 transposase chromosome CDS1175476 1263 - 0.4038
lp_1348 lp_1348 unknown chromosome CDS1238706 399 + 0.380952
lp_1416 lp_1416 phosphoesterase chromosome CDS1295486 1221 + 0.506142
lp_1433 lp_1433 MutT/NudX family protein (putative) chromosome CDS1312481 414 + 0.437198
lp_1586 lp_1586 unknown chromosome CDS1447516 339 - 0.477876
lp_1756 lp_1756 unknown chromosome CDS1594001 1146 + 0.468586
lp_1790 lp_1790 ADP-ribose pyrophosphatase (putative) chromosome CDS1622041 495 + 0.507071
lp_1892 lp_1892 integrase/recombinase chromosome CDS1708537 891 - 0.441077
lp_1991 lp_1991 N-methylpurine-DNA glycosylase (putative) chromosome CDS1802975 630 - 0.503175
lp_1997 lp_1997 integrase, fragment chromosome CDS1805861 324 + 0.361111
lp_2005 lp_2005 transposase, fragment chromosome CDS1811100 294 - 0.357143
lp_2007 lp_2007 transposase, fragment chromosome CDS1813308 360 - 0.402778
lp_2009 lp_2009 transposase, fragment chromosome CDS1813664 432 - 0.393519
lp_2010 lp_2010 unknown chromosome CDS1814349 225 + 0.373333
lp_2011 lp_2011 transposase, fragment (putative) chromosome CDS1814577 348 + 0.41954
lp_2013 lp_2013 transposase, fragment chromosome CDS1815185 213 + 0.375587
lp_2014 lp_2014 transposase, fragment chromosome CDS1815575 240 + 0.475
lp_2022 lp_2022 transposase, fragment chromosome CDS1824054 423 + 0.390071
lp_2023 lp_2023 transposase, fragment chromosome CDS1824473 759 + 0.397892
lp_2058 lp_2058 endonuclease containing a URI domain (putative) chromosome CDS1861193 306 - 0.428105
lp_2074 lp_2074 transposase, fragment chromosome CDS1869946 573 - 0.394415
lp_2134 lp_2134 N6-adenine-specific methylase (putative) chromosome CDS1926502 564 - 0.478723
lp_2183 lp_2183 ADP-ribose pyrophosphatase chromosome CDS1971656 555 - 0.515315
lp_2231a lp_2231a unknown chromosome CDS2021160 381 - 0.417323
lp_2243 lp_2243 type I restriction-modification system methyltransferase subunit (putative) chromosome CDS2031147 1011 - 0.44906
lp_2274 lp_2274 endonuclease involved in recombination (putative) chromosome CDS2053484 435 - 0.478161
lp_2320 lp_2320 DNA repair protein chromosome CDS2095313 636 - 0.470126
lp_2423 lp_2423 prophage Lp2 protein 34 chromosome CDS2184918 510 - 0.435294
lp_2435 lp_2435 prophage Lp2 protein 22 chromosome CDS2190592 531 - 0.369115
lp_2437 lp_2437 prophage Lp2 protein 20 chromosome CDS2191403 978 - 0.453988
lp_2454 lp_2454 prophage Lp2 protein 3 chromosome CDS2201698 915 + 0.33224
lp_2455 lp_2455 prophage Lp2 protein 2, integrase chromosome CDS2202699 1122 + 0.426916
lp_2456 lp_2456 prophage Lp2 protein 1 chromosome CDS2203834 357 + 0.394958
lp_2467 lp_2467 prophage Lp3 protein 14, terminase small subunit chromosome CDS2210550 474 - 0.440928
lp_2480 lp_2480 prophage Lp3 protein 1, integrase chromosome CDS2217185 1158 + 0.392919
lp_2762 lp_2762 ADP-ribose pyrophosphatase chromosome CDS2455184 567 - 0.470899
lp_3123 lp_3123 pyrophosphatase (putative) chromosome CDS2788963 825 - 0.482424
lp_3165 lp_3165 transposase, fragment chromosome CDS2825555 165 - 0.363636
lp_3168 lp_3168 transposase, fragment chromosome CDS2826134 213 - 0.328638
lp_3390 lp_3390 prophage Lp4 protein 1, integrase chromosome CDS3006114 1167 + 0.405313
lp_3569 lp_3569 transposase (putative) chromosome CDS3188496 432 - 0.4375
lp_3570 lp_3570 transposase (putative) chromosome CDS3188860 411 - 0.508516
lp_3679 lp_3679 extracellular protein chromosome CDS3296594 738 - 0.449865
mfd lp_0539 transcription-repair coupling factor chromosome CDS487338 3528 + 0.470805
mutS lp_2271 DNA mismatch repair protein MutS2 chromosome CDS2050369 2364 - 0.48308
mutY lp_3349 A/G-specific adenine glycosylase (putative) chromosome CDS2979249 1101 - 0.479564
nfo lp_1976 deoxyribonuclease IV chromosome CDS1787438 897 - 0.464883
nth1 lp_2860 DNA-(apurinic or apyrimidinic site) lyase chromosome CDS2550236 651 - 0.480799
nth2 lp_3241 DNA-(apurinic or apyrimidinic site) lyase chromosome CDS2889350 669 - 0.493274
ogt lp_2848 methylated-DNA--[protein]-cysteineS-methyltransf erase chromosome CDS2539200 501 + 0.499002
orf1 DNA-damage-inducible geneSubName: Full=DNA-damage-inducible protein; pWCFS103 CDS1 282 - 0.429078
orf19 putative transposaseSubName: Full=Putative transposase; pWCFS103 CDS13100 1035 - 0.478261
orf37 hypothetical proteinSubName: Full=Uncharacterized protein; pWCFS103 CDS28133 339 - 0.433628
parC lp_1839 topoisomerase IV, subunit A chromosome CDS1660283 2451 - 0.453692
parE lp_1840 topoisomerase IV, subunit B chromosome CDS1662747 2007 - 0.457399
pcrA lp_1144 ATP-dependent DNA helicase PcrA chromosome CDS1038557 2268 + 0.458995
pkn2 lp_3176 serine/threonine protein kinase chromosome CDS2834878 1107 - 0.474255
polA lp_1508 DNA-directed DNA polymerase I chromosome CDS1378501 2649 + 0.451869
polC lp_2045 DNA-directed DNA polymerase III, alpha chain PolC-type chromosome CDS1846031 4314 - 0.468243
priA lp_1615 primosomal protein N' chromosome CDS1467824 2418 + 0.504549
recA lp_2301 recombinase A chromosome CDS2078957 1143 - 0.47594
recD lp_2168 exodeoxyribonuclease V, alpha chain chromosome CDS1957658 2550 - 0.476863
recF lp_0005 DNA repair and genetic recombination protein RecF chromosome CDS3444 1125 + 0.452444
recG lp_1627 ATP-dependent DNA helicase RecG chromosome CDS1480673 2040 + 0.487255
recJ lp_2087 single-strand DNA-specific exonuclease RecJ chromosome CDS1881232 2337 - 0.494651
recN lp_1605 DNA repair protein RecN chromosome CDS1459365 1695 + 0.459587
recO lp_1966 DNA repair protein RecO chromosome CDS1780833 777 - 0.486486
recQ1 lp_0962 ATP-dependent DNA helicase RecQ chromosome CDS893921 1809 + 0.500829
recQ2 lp_1885 ATP-dependent DNA helicase RecQ chromosome CDS1702391 1440 - 0.477083
recR lp_0700 recombination protein RecR chromosome CDS645025 600 + 0.461667
repA replication proteinSubName: Full=Replication protein; pWCFS101 CDS163 960 + 0.382292
rexA lp_2693 ATP-dependent nuclease, subunit A chromosome CDS2389478 3750 - 0.460533
rexB lp_2694 ATP-dependent nuclease, subunit B chromosome CDS2393220 3606 - 0.460344
rhe1 lp_0520 ATP-dependent RNA helicase chromosome CDS465293 1587 + 0.465658
rhe2 lp_1162 ATP-dependent RNA helicase chromosome CDS1060282 1335 + 0.506367
rhe3 lp_2278 ATP-dependent RNA helicase chromosome CDS2057539 1344 - 0.467262
rnhB lp_1853 ribonuclease HII chromosome CDS1674735 768 - 0.519531
ruvA lp_2287 holliday junction DNA helicase RuvA chromosome CDS2065179 612 - 0.488562
ruvB lp_2286 holliday junction DNA helicase RuvB chromosome CDS2064151 1011 - 0.496538
sbcC lp_1548 exonuclease SbcC chromosome CDS1414157 3186 - 0.479912
sbcD lp_1549 exonuclease SbcD chromosome CDS1417345 1182 - 0.476311
ssb lp_0010 single-strand binding protein chromosome CDS10196 603 + 0.419569
tag1 lp_0296 DNA-3-methyladenine glycosylase I chromosome CDS271075 564 + 0.498227
tag2 lp_3020 DNA-3-methyladenine glycosylase I chromosome CDS2686705 645 + 0.48062
tag3 lp_3293 DNA-3-methyladenine glycosylase I chromosome CDS2930411 555 - 0.486486
tnpA putative transposaseSubName: Full=Putative transposase; pWCFS103 CDS32645 2994 + 0.424516
tnpR1 putative resolvaseSubName: Full=Putative resolvase; pWCFS103 CDS3816 555 - 0.410811
tnpR2 putative resolvaseSubName: Full=Putative resolvase; Flags: Fragment; pWCFS103 CDS31880 587 - 0.434412
topA lp_1850 DNA topoisomerase chromosome CDS1671554 2148 - 0.471601
traI DNA topoisomeraseRecName: Full=DNA topoisomerase; EC=5.99.1.2; pWCFS103 CDS14746 2136 - 0.430243
umuC lp_3023 UV-damage repair protein chromosome CDS2689180 1524 - 0.479003
ung lp_0806 uracil-DNA glycosylase chromosome CDS747476 693 + 0.463203
uvrA1 lp_0773 excinuclease ABC, subunit A chromosome CDS707212 2856 + 0.468137
uvrA2 lp_1364 excinuclease ABC, subunit A chromosome CDS1249993 2271 + 0.498899
uvrA3 lp_2915 excinuclease ABC, subunit A chromosome CDS2591591 2508 + 0.509569
uvrB lp_0772 excinuclease ABC, subunit B chromosome CDS705174 2004 + 0.468563
uvrC lp_2109 excinuclease ABC, subunit C chromosome CDS1903489 1815 - 0.455647
xseA lp_1600 exodeoxyribonuclease VII, large subunit chromosome CDS1455431 1344 + 0.470982
xseB lp_1601 exodeoxyribonuclease VII, small subunit chromosome CDS1456774 231 + 0.419913