Gene list
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COG category: Replication, recombination and repair
Organism: Lactobacillus plantarum WCFS1, WCFS1
Number of genes found: 170
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Lactobacillus plantarum WCFS1, WCFS1 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
ISP1 | lp_3036 | transposase | chromosome | CDS | 2698344 | 1263 | + | 0.4038 |
ISP1 | lp_1463 | transposase | chromosome | CDS | 1340810 | 1263 | - | 0.4038 |
ISP1 | lp_3308 | transposase | chromosome | CDS | 2940232 | 1263 | + | 0.4038 |
ISP1 | lp_2164 | transposase | chromosome | CDS | 1955214 | 1263 | + | 0.4038 |
ISP1 | lp_2617 | transposase | chromosome | CDS | 2333772 | 1263 | - | 0.4038 |
ISP1 | lp_1064 | transposase | chromosome | CDS | 967144 | 1263 | - | 0.4038 |
ISP1 | lp_1537 | transposase | chromosome | CDS | 1403581 | 1263 | - | 0.4038 |
ISP2 | lp_2006 | transposase | chromosome | CDS | 1811515 | 1653 | - | 0.415608 |
ISP2 | lp_0216 | transposase | chromosome | CDS | 198163 | 1653 | + | 0.413793 |
ISP2 | lp_3496 | transposase | chromosome | CDS | 3109403 | 1671 | - | 0.412926 |
ISP2 | lp_0911 | transposase | chromosome | CDS | 840601 | 1734 | + | 0.412918 |
ISP2-C | lp_3332 | transposase, C-terminal fragment | chromosome | CDS | 2965370 | 225 | + | 0.422222 |
ISP2-N | lp_3331 | transposase, N-terminal fragment | chromosome | CDS | 2963939 | 1386 | + | 0.410534 |
codV | lp_1847 | integrase/recombinase | chromosome | CDS | 1668926 | 945 | - | 0.462434 |
comEA | lp_2131 | ComE operon protein 1 | chromosome | CDS | 1924140 | 726 | - | 0.513774 |
comFA | lp_0735 | ATP-dependent DNA helicase/translocase (putative) | chromosome | CDS | 672499 | 1353 | + | 0.49963 |
cshA1 | lp_1519 | chromosome segregation helicase (putative) | chromosome | CDS | 1389882 | 1263 | - | 0.457641 |
cshA2 | lp_1543 | chromosome segregation helicase (putative) | chromosome | CDS | 1408815 | 1377 | + | 0.475672 |
cshA3 | lp_2337 | chromosome segregation helicase (putative) | chromosome | CDS | 2113437 | 1281 | + | 0.492584 |
dinG | lp_1737 | ATP-dependent helicase DinG | chromosome | CDS | 1574877 | 2805 | + | 0.48164 |
dinP | lp_2280 | DNA-damage-inducible protein P | chromosome | CDS | 2059934 | 1101 | - | 0.467757 |
dnaA | lp_0001 | chromosomal replication initiation protein DnaA | chromosome | CDS | 1 | 1368 | + | 0.445175 |
dnaB | lp_1512 | replication initiation and membrane attachment protein DnaB | chromosome | CDS | 1383167 | 1401 | + | 0.481799 |
dnaC | lp_0014 | replicative DNA helicase DnaC | chromosome | CDS | 13747 | 1425 | + | 0.477193 |
dnaD | lp_1741 | DNA replication protein DnaD | chromosome | CDS | 1580863 | 726 | + | 0.449036 |
dnaE | lp_1899 | DNA-directed DNA polymerase III, alpha chain | chromosome | CDS | 1714731 | 3351 | - | 0.471799 |
dnaG | lp_1963 | DNA primase DnaG | chromosome | CDS | 1775390 | 1881 | - | 0.467305 |
dnaI | lp_1513 | primosomal protein DnaI | chromosome | CDS | 1384571 | 936 | + | 0.46047 |
dnaN | lp_0002 | DNA-directed DNA polymerase III, beta chain | chromosome | CDS | 1546 | 1140 | + | 0.425439 |
dnaX | lp_0698 | DNA-directed DNA polymerase III, gamma/tau subunit | chromosome | CDS | 642982 | 1698 | + | 0.468787 |
dprA | lp_1852 | DNA processing protein | chromosome | CDS | 1673790 | 867 | - | 0.499423 |
esbB | lp_1777 | cell wall enzyme | chromosome | CDS | 1609565 | 387 | - | 0.459948 |
exoA | lp_0812 | exodeoxyribonuclease III | chromosome | CDS | 751084 | 765 | - | 0.458824 |
fpg | lp_1509 | formamidopyrimidine-DNA glycosylase | chromosome | CDS | 1381161 | 825 | + | 0.464242 |
gyrA | lp_0007 | DNA gyrase, A subunit | chromosome | CDS | 6676 | 2562 | + | 0.46292 |
gyrB | lp_0006 | DNA gyrase, B subunit | chromosome | CDS | 4565 | 1947 | + | 0.459168 |
hbsU | lp_1879 | DNA-binding protein II | chromosome | CDS | 1697626 | 276 | - | 0.434783 |
hexA | lp_2298 | DNA mismatch repair protein MutS | chromosome | CDS | 2073518 | 2691 | - | 0.456708 |
hexB | lp_2297 | DNA mismatch repair protein HexB | chromosome | CDS | 2071311 | 2037 | - | 0.486991 |
holA | lp_2128 | DNA-directed DNA polymerase III, delta chain | chromosome | CDS | 1920296 | 1062 | - | 0.468927 |
holB | lp_0705 | DNA-directed DNA polymerase III, delta' subunit | chromosome | CDS | 647296 | 1020 | + | 0.487255 |
ligA | lp_1145 | DNA ligase (NAD+) | chromosome | CDS | 1040841 | 2040 | + | 0.490686 |
lp_0048 | lp_0048 | unknown | chromosome | CDS | 48877 | 633 | + | 0.454976 |
lp_0119 | lp_0119 | NTP pyrophosphohydrolase | chromosome | CDS | 105689 | 471 | - | 0.450106 |
lp_0308 | lp_0308 | DNA helicase (putative) | chromosome | CDS | 283146 | 2370 | - | 0.481857 |
lp_0366 | lp_0366 | unknown | chromosome | CDS | 333828 | 447 | - | 0.519016 |
lp_0452 | lp_0452 | unknown | chromosome | CDS | 405940 | 429 | + | 0.473193 |
lp_0456 | lp_0456 | DNAse (putative) | chromosome | CDS | 410280 | 777 | + | 0.46332 |
lp_0457 | lp_0457 | unknown | chromosome | CDS | 411043 | 564 | + | 0.526596 |
lp_0624 | lp_0624 | prophage Lp1 protein 1, integrase | chromosome | CDS | 590128 | 1203 | - | 0.375727 |
lp_0641 | lp_0641 | prophage Lp1 protein 18 | chromosome | CDS | 599200 | 888 | + | 0.423423 |
lp_0643 | lp_0643 | prophage Lp1 protein 20 | chromosome | CDS | 600953 | 933 | + | 0.426581 |
lp_0645 | lp_0645 | prophage Lp1 protein 22 | chromosome | CDS | 602166 | 531 | + | 0.369115 |
lp_0647 | lp_0647 | prophage Lp1 protein 24 | chromosome | CDS | 603219 | 420 | + | 0.457143 |
lp_0660 | lp_0660 | prophage Lp1 protein 37 | chromosome | CDS | 607764 | 597 | + | 0.40201 |
lp_0811 | lp_0811 | DNA-directed DNA polymerase III, epsilon chain (putative) | chromosome | CDS | 750485 | 522 | - | 0.48659 |
lp_0864 | lp_0864 | unknown | chromosome | CDS | 804636 | 420 | + | 0.442857 |
lp_0897 | lp_0897 | NTP pyrophosphohydrolase (putative) | chromosome | CDS | 826727 | 438 | + | 0.511416 |
lp_0903 | lp_0903 | 7,8-dihydro-8-oxoguanine-triphosphatase(putative ) | chromosome | CDS | 831740 | 1074 | - | 0.480447 |
lp_0941 | lp_0941 | integrase | chromosome | CDS | 873765 | 918 | + | 0.3878 |
lp_0961 | lp_0961 | unknown | chromosome | CDS | 893448 | 216 | + | 0.490741 |
lp_1191 | lp_1191 | transposase, fragment | chromosome | CDS | 1088345 | 213 | - | 0.431925 |
lp_1192 | lp_1192 | transposase, fragment (putative) | chromosome | CDS | 1088479 | 486 | - | 0.497942 |
lp_1194 | lp_1194 | transposase, fragment (putative) | chromosome | CDS | 1089231 | 348 | - | 0.502874 |
lp_1195 | lp_1195 | transposase, fragment (putative) | chromosome | CDS | 1089677 | 228 | - | 0.539474 |
lp_1196 | lp_1196 | integrase/recombinase, fragment (putative) | chromosome | CDS | 1089967 | 588 | - | 0.372449 |
lp_1207 | lp_1207 | unknown | chromosome | CDS | 1100937 | 201 | + | 0.348259 |
lp_1212 | lp_1212 | transposase | chromosome | CDS | 1104023 | 651 | - | 0.420891 |
lp_1213 | lp_1213 | unknown | chromosome | CDS | 1104908 | 288 | - | 0.451389 |
lp_1214 | lp_1214 | unknown | chromosome | CDS | 1105225 | 381 | - | 0.401575 |
lp_1268 | lp_1268 | integrase/recombinase, fragment (putative) | chromosome | CDS | 1153425 | 561 | + | 0.43672 |
lp_1288 | lp_1288 | transposase | chromosome | CDS | 1175476 | 1263 | - | 0.4038 |
lp_1348 | lp_1348 | unknown | chromosome | CDS | 1238706 | 399 | + | 0.380952 |
lp_1416 | lp_1416 | phosphoesterase | chromosome | CDS | 1295486 | 1221 | + | 0.506142 |
lp_1433 | lp_1433 | MutT/NudX family protein (putative) | chromosome | CDS | 1312481 | 414 | + | 0.437198 |
lp_1586 | lp_1586 | unknown | chromosome | CDS | 1447516 | 339 | - | 0.477876 |
lp_1756 | lp_1756 | unknown | chromosome | CDS | 1594001 | 1146 | + | 0.468586 |
lp_1790 | lp_1790 | ADP-ribose pyrophosphatase (putative) | chromosome | CDS | 1622041 | 495 | + | 0.507071 |
lp_1892 | lp_1892 | integrase/recombinase | chromosome | CDS | 1708537 | 891 | - | 0.441077 |
lp_1991 | lp_1991 | N-methylpurine-DNA glycosylase (putative) | chromosome | CDS | 1802975 | 630 | - | 0.503175 |
lp_1997 | lp_1997 | integrase, fragment | chromosome | CDS | 1805861 | 324 | + | 0.361111 |
lp_2005 | lp_2005 | transposase, fragment | chromosome | CDS | 1811100 | 294 | - | 0.357143 |
lp_2007 | lp_2007 | transposase, fragment | chromosome | CDS | 1813308 | 360 | - | 0.402778 |
lp_2009 | lp_2009 | transposase, fragment | chromosome | CDS | 1813664 | 432 | - | 0.393519 |
lp_2010 | lp_2010 | unknown | chromosome | CDS | 1814349 | 225 | + | 0.373333 |
lp_2011 | lp_2011 | transposase, fragment (putative) | chromosome | CDS | 1814577 | 348 | + | 0.41954 |
lp_2013 | lp_2013 | transposase, fragment | chromosome | CDS | 1815185 | 213 | + | 0.375587 |
lp_2014 | lp_2014 | transposase, fragment | chromosome | CDS | 1815575 | 240 | + | 0.475 |
lp_2022 | lp_2022 | transposase, fragment | chromosome | CDS | 1824054 | 423 | + | 0.390071 |
lp_2023 | lp_2023 | transposase, fragment | chromosome | CDS | 1824473 | 759 | + | 0.397892 |
lp_2058 | lp_2058 | endonuclease containing a URI domain (putative) | chromosome | CDS | 1861193 | 306 | - | 0.428105 |
lp_2074 | lp_2074 | transposase, fragment | chromosome | CDS | 1869946 | 573 | - | 0.394415 |
lp_2134 | lp_2134 | N6-adenine-specific methylase (putative) | chromosome | CDS | 1926502 | 564 | - | 0.478723 |
lp_2183 | lp_2183 | ADP-ribose pyrophosphatase | chromosome | CDS | 1971656 | 555 | - | 0.515315 |
lp_2231a | lp_2231a | unknown | chromosome | CDS | 2021160 | 381 | - | 0.417323 |
lp_2243 | lp_2243 | type I restriction-modification system methyltransferase subunit (putative) | chromosome | CDS | 2031147 | 1011 | - | 0.44906 |
lp_2274 | lp_2274 | endonuclease involved in recombination (putative) | chromosome | CDS | 2053484 | 435 | - | 0.478161 |
lp_2320 | lp_2320 | DNA repair protein | chromosome | CDS | 2095313 | 636 | - | 0.470126 |
lp_2423 | lp_2423 | prophage Lp2 protein 34 | chromosome | CDS | 2184918 | 510 | - | 0.435294 |
lp_2435 | lp_2435 | prophage Lp2 protein 22 | chromosome | CDS | 2190592 | 531 | - | 0.369115 |
lp_2437 | lp_2437 | prophage Lp2 protein 20 | chromosome | CDS | 2191403 | 978 | - | 0.453988 |
lp_2454 | lp_2454 | prophage Lp2 protein 3 | chromosome | CDS | 2201698 | 915 | + | 0.33224 |
lp_2455 | lp_2455 | prophage Lp2 protein 2, integrase | chromosome | CDS | 2202699 | 1122 | + | 0.426916 |
lp_2456 | lp_2456 | prophage Lp2 protein 1 | chromosome | CDS | 2203834 | 357 | + | 0.394958 |
lp_2467 | lp_2467 | prophage Lp3 protein 14, terminase small subunit | chromosome | CDS | 2210550 | 474 | - | 0.440928 |
lp_2480 | lp_2480 | prophage Lp3 protein 1, integrase | chromosome | CDS | 2217185 | 1158 | + | 0.392919 |
lp_2762 | lp_2762 | ADP-ribose pyrophosphatase | chromosome | CDS | 2455184 | 567 | - | 0.470899 |
lp_3123 | lp_3123 | pyrophosphatase (putative) | chromosome | CDS | 2788963 | 825 | - | 0.482424 |
lp_3165 | lp_3165 | transposase, fragment | chromosome | CDS | 2825555 | 165 | - | 0.363636 |
lp_3168 | lp_3168 | transposase, fragment | chromosome | CDS | 2826134 | 213 | - | 0.328638 |
lp_3390 | lp_3390 | prophage Lp4 protein 1, integrase | chromosome | CDS | 3006114 | 1167 | + | 0.405313 |
lp_3569 | lp_3569 | transposase (putative) | chromosome | CDS | 3188496 | 432 | - | 0.4375 |
lp_3570 | lp_3570 | transposase (putative) | chromosome | CDS | 3188860 | 411 | - | 0.508516 |
lp_3679 | lp_3679 | extracellular protein | chromosome | CDS | 3296594 | 738 | - | 0.449865 |
mfd | lp_0539 | transcription-repair coupling factor | chromosome | CDS | 487338 | 3528 | + | 0.470805 |
mutS | lp_2271 | DNA mismatch repair protein MutS2 | chromosome | CDS | 2050369 | 2364 | - | 0.48308 |
mutY | lp_3349 | A/G-specific adenine glycosylase (putative) | chromosome | CDS | 2979249 | 1101 | - | 0.479564 |
nfo | lp_1976 | deoxyribonuclease IV | chromosome | CDS | 1787438 | 897 | - | 0.464883 |
nth1 | lp_2860 | DNA-(apurinic or apyrimidinic site) lyase | chromosome | CDS | 2550236 | 651 | - | 0.480799 |
nth2 | lp_3241 | DNA-(apurinic or apyrimidinic site) lyase | chromosome | CDS | 2889350 | 669 | - | 0.493274 |
ogt | lp_2848 | methylated-DNA--[protein]-cysteineS-methyltransf erase | chromosome | CDS | 2539200 | 501 | + | 0.499002 |
orf1 | DNA-damage-inducible gene | pWCFS103 | CDS | 1 | 282 | - | 0.429078 | |
orf19 | putative transposase | pWCFS103 | CDS | 13100 | 1035 | - | 0.478261 | |
orf37 | hypothetical protein | pWCFS103 | CDS | 28133 | 339 | - | 0.433628 | |
parC | lp_1839 | topoisomerase IV, subunit A | chromosome | CDS | 1660283 | 2451 | - | 0.453692 |
parE | lp_1840 | topoisomerase IV, subunit B | chromosome | CDS | 1662747 | 2007 | - | 0.457399 |
pcrA | lp_1144 | ATP-dependent DNA helicase PcrA | chromosome | CDS | 1038557 | 2268 | + | 0.458995 |
pkn2 | lp_3176 | serine/threonine protein kinase | chromosome | CDS | 2834878 | 1107 | - | 0.474255 |
polA | lp_1508 | DNA-directed DNA polymerase I | chromosome | CDS | 1378501 | 2649 | + | 0.451869 |
polC | lp_2045 | DNA-directed DNA polymerase III, alpha chain PolC-type | chromosome | CDS | 1846031 | 4314 | - | 0.468243 |
priA | lp_1615 | primosomal protein N' | chromosome | CDS | 1467824 | 2418 | + | 0.504549 |
recA | lp_2301 | recombinase A | chromosome | CDS | 2078957 | 1143 | - | 0.47594 |
recD | lp_2168 | exodeoxyribonuclease V, alpha chain | chromosome | CDS | 1957658 | 2550 | - | 0.476863 |
recF | lp_0005 | DNA repair and genetic recombination protein RecF | chromosome | CDS | 3444 | 1125 | + | 0.452444 |
recG | lp_1627 | ATP-dependent DNA helicase RecG | chromosome | CDS | 1480673 | 2040 | + | 0.487255 |
recJ | lp_2087 | single-strand DNA-specific exonuclease RecJ | chromosome | CDS | 1881232 | 2337 | - | 0.494651 |
recN | lp_1605 | DNA repair protein RecN | chromosome | CDS | 1459365 | 1695 | + | 0.459587 |
recO | lp_1966 | DNA repair protein RecO | chromosome | CDS | 1780833 | 777 | - | 0.486486 |
recQ1 | lp_0962 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 893921 | 1809 | + | 0.500829 |
recQ2 | lp_1885 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 1702391 | 1440 | - | 0.477083 |
recR | lp_0700 | recombination protein RecR | chromosome | CDS | 645025 | 600 | + | 0.461667 |
repA | replication protein | pWCFS101 | CDS | 163 | 960 | + | 0.382292 | |
rexA | lp_2693 | ATP-dependent nuclease, subunit A | chromosome | CDS | 2389478 | 3750 | - | 0.460533 |
rexB | lp_2694 | ATP-dependent nuclease, subunit B | chromosome | CDS | 2393220 | 3606 | - | 0.460344 |
rhe1 | lp_0520 | ATP-dependent RNA helicase | chromosome | CDS | 465293 | 1587 | + | 0.465658 |
rhe2 | lp_1162 | ATP-dependent RNA helicase | chromosome | CDS | 1060282 | 1335 | + | 0.506367 |
rhe3 | lp_2278 | ATP-dependent RNA helicase | chromosome | CDS | 2057539 | 1344 | - | 0.467262 |
rnhB | lp_1853 | ribonuclease HII | chromosome | CDS | 1674735 | 768 | - | 0.519531 |
ruvA | lp_2287 | holliday junction DNA helicase RuvA | chromosome | CDS | 2065179 | 612 | - | 0.488562 |
ruvB | lp_2286 | holliday junction DNA helicase RuvB | chromosome | CDS | 2064151 | 1011 | - | 0.496538 |
sbcC | lp_1548 | exonuclease SbcC | chromosome | CDS | 1414157 | 3186 | - | 0.479912 |
sbcD | lp_1549 | exonuclease SbcD | chromosome | CDS | 1417345 | 1182 | - | 0.476311 |
ssb | lp_0010 | single-strand binding protein | chromosome | CDS | 10196 | 603 | + | 0.419569 |
tag1 | lp_0296 | DNA-3-methyladenine glycosylase I | chromosome | CDS | 271075 | 564 | + | 0.498227 |
tag2 | lp_3020 | DNA-3-methyladenine glycosylase I | chromosome | CDS | 2686705 | 645 | + | 0.48062 |
tag3 | lp_3293 | DNA-3-methyladenine glycosylase I | chromosome | CDS | 2930411 | 555 | - | 0.486486 |
tnpA | putative transposase | pWCFS103 | CDS | 32645 | 2994 | + | 0.424516 | |
tnpR1 | putative resolvase | pWCFS103 | CDS | 3816 | 555 | - | 0.410811 | |
tnpR2 | putative resolvase | pWCFS103 | CDS | 31880 | 587 | - | 0.434412 | |
topA | lp_1850 | DNA topoisomerase | chromosome | CDS | 1671554 | 2148 | - | 0.471601 |
traI | DNA topoisomerase | pWCFS103 | CDS | 14746 | 2136 | - | 0.430243 | |
umuC | lp_3023 | UV-damage repair protein | chromosome | CDS | 2689180 | 1524 | - | 0.479003 |
ung | lp_0806 | uracil-DNA glycosylase | chromosome | CDS | 747476 | 693 | + | 0.463203 |
uvrA1 | lp_0773 | excinuclease ABC, subunit A | chromosome | CDS | 707212 | 2856 | + | 0.468137 |
uvrA2 | lp_1364 | excinuclease ABC, subunit A | chromosome | CDS | 1249993 | 2271 | + | 0.498899 |
uvrA3 | lp_2915 | excinuclease ABC, subunit A | chromosome | CDS | 2591591 | 2508 | + | 0.509569 |
uvrB | lp_0772 | excinuclease ABC, subunit B | chromosome | CDS | 705174 | 2004 | + | 0.468563 |
uvrC | lp_2109 | excinuclease ABC, subunit C | chromosome | CDS | 1903489 | 1815 | - | 0.455647 |
xseA | lp_1600 | exodeoxyribonuclease VII, large subunit | chromosome | CDS | 1455431 | 1344 | + | 0.470982 |
xseB | lp_1601 | exodeoxyribonuclease VII, small subunit | chromosome | CDS | 1456774 | 231 | + | 0.419913 |